BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8807
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 40 ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPR 82
I + LF G DL A+++QR RDHGL YN +R FCGLP+
Sbjct: 290 IRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQ 332
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 40 ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPR 82
I + LF G DL A+++QR RDHGL YN +R FCGLP+
Sbjct: 290 IRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQ 332
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 40 ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPR 82
I + LF G DL A+++QR RDHGL YN +R FCGLP+
Sbjct: 290 IRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQ 332
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
FCGL + + V+ +L
Sbjct: 454 GFCGLSQPKTLKGLQTVLKNKIL 476
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
FCGL + + V+ +L
Sbjct: 454 GFCGLSQPKTLKGLQTVLKNKIL 476
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 383 LVRGLLAKKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 441
Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
FCGL + + V+ +L
Sbjct: 442 GFCGLSQPKTLKGLQTVLKNKIL 464
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
FCGL + + V+ +L
Sbjct: 454 GFCGLSQPKTLKGLQTVLKNKIL 476
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
FCGL + + V+ +L
Sbjct: 454 GFCGLSQPKTLKGLQTVLKNKIL 476
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 29 RRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPR 82
+++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R FCGL +
Sbjct: 402 KKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQ 460
Query: 83 AYKFEDFLDVISPDLL 98
+ V+ +L
Sbjct: 461 PKTLKGLQTVLKNKIL 476
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 29 RRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPR 82
+++ L+ D ++T L RN K G DL AI++QR RDHG+ YN +R FCGL +
Sbjct: 390 KKSKLMNQDKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQ 448
Query: 83 AYKFEDFLDVISPDLL 98
+ V+ +L
Sbjct: 449 PKTLKGLQTVLKNKIL 464
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ + ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQNKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLLLEDQL 103
FCGL + + V+ +L + L
Sbjct: 454 GFCGLSQPKTLKGLQAVLKNKILAKKLL 481
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ + ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKKSKLMNQNKMVTSEL-RNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLLLEDQL 103
FCGL + + V+ +L + L
Sbjct: 454 GFCGLSQPKTLKGLQAVLKNKILAKKLL 481
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV + + L+ + ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKNSKLMNQNKMVTSEL-RNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLLLEDQL 103
FCGL + + V+ +L + L
Sbjct: 454 GFCGLSQPKTLKGLQAVLKNKVLAKKLL 481
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNG------KPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV + + L+ + ++T L RN K G DL AI++QR RDHG+ YN +R
Sbjct: 395 LVRGLLAKNSKLMNQNKMVTSEL-RNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLLLEDQL 103
FCGL + + V+ +L + L
Sbjct: 454 GFCGLSQPKTLKGLQAVLKNKVLAKKLL 481
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 24 YSTCYRRAALLADDMVITDFLFRNGKPFG 52
+S RRAA L D VI + R+ +PFG
Sbjct: 119 FSEILRRAASLEDGAVIFGYYVRDPRPFG 147
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 23 VYSTCYRRAALLADDMVITDFLFRNGKPFG 52
V+ TC + ALL D VI F R GK FG
Sbjct: 241 VHETCQKHGALLISDEVICGF-GRTGKAFG 269
>pdb|3KUZ|A Chain A, Crystal Structure Of The Ubiquitin Like Domain Of Plxnc1
pdb|3KUZ|B Chain B, Crystal Structure Of The Ubiquitin Like Domain Of Plxnc1
Length = 126
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 35 ADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVIS 94
A + + FL +NG P+G L I ++ L + ++ LD+ S
Sbjct: 54 AKEKIFQAFLSKNGSPYGLQLNEIGLE------------------LQMGTRQKELLDIDS 95
Query: 95 PDLLLEDQLAEI 106
++LED + ++
Sbjct: 96 SSVILEDGITKL 107
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 47 NGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91
+P DL A+++ R R+ + YN++R + K+ED +
Sbjct: 483 QARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTE 527
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,046,345
Number of Sequences: 62578
Number of extensions: 159143
Number of successful extensions: 506
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 37
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)