Query psy8807
Match_columns 136
No_of_seqs 126 out of 717
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:46:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 2.7E-33 9.1E-38 249.5 7.2 116 18-134 390-571 (595)
2 1d2v_C Myeloperoxidase; heme-p 100.0 2.7E-32 9.1E-37 236.8 7.8 116 18-134 263-444 (466)
3 3nt1_A Prostaglandin-endoperox 99.9 4.8E-27 1.6E-31 209.1 6.4 108 18-135 386-554 (587)
4 1q4g_A Prostaglandin G/H synth 99.9 2.1E-26 7E-31 203.4 6.6 107 18-134 386-553 (553)
5 1skn_P DNA-binding domain of S 58.0 5 0.00017 27.8 1.9 48 56-109 17-64 (92)
6 2kz5_A Transcription factor NF 49.4 7.2 0.00024 27.0 1.6 49 55-109 20-68 (91)
7 3r8n_R 30S ribosomal protein S 30.8 20 0.0007 22.2 1.4 19 54-72 34-52 (55)
8 3bbo_S Ribosomal protein L20; 26.3 40 0.0014 24.1 2.4 25 53-77 55-84 (119)
9 3i1m_R 30S ribosomal protein S 24.6 31 0.0011 22.7 1.5 19 54-72 53-71 (75)
10 2lz1_A Nuclear factor erythroi 21.2 41 0.0014 23.1 1.6 47 56-108 21-67 (90)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=99.98 E-value=2.7e-33 Score=249.48 Aligned_cols=116 Identities=29% Similarity=0.495 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHhhhh--hc---CcHHHHhhcccCCCCC-CcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhh
Q psy8807 18 IHWELVYSTCYRRAAL--LA---DDMVITDFLFRNGKPF-GRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~--~~---~~~~l~~~LF~~~~~~-G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~ 91 (136)
+|++.+++||.++.+. .. .+++|+++||++.+.. |+||+|+|||||||||||+||+||++|||+++++|+||..
T Consensus 390 ~gid~llrGl~~q~a~~~~~d~~~~~~l~~~Lf~~~~~~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~~ 469 (595)
T 3q9k_A 390 GGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQT 469 (595)
T ss_dssp TCSHHHHHHHHHSEEECCCTTSCSCHHHHTCEECTTSCSEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHH
T ss_pred cchHHHHHHHhhCcccccCCCccCCHHHHHHhccCCCccccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHhh
Confidence 6899999999999887 32 4699999999976666 9999999999999999999999999999999999999997
Q ss_pred ccCcCcc------------------------------------------------------------CHHHHHHHHhccc
Q psy8807 92 VISPDLL------------------------------------------------------------LEDQLAEIKKASL 111 (136)
Q Consensus 92 ~~~~~~i------------------------------------------------------------t~~QL~eIrk~tl 111 (136)
.++++.| |++||+||||+||
T Consensus 470 ~~~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~yen~~~ft~~ql~ei~~~sl 549 (595)
T 3q9k_A 470 VLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSF 549 (595)
T ss_dssp HHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTTSBTTBCHHHHHHHTTCCH
T ss_pred hcCcHHHHHHHHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeecCCCcCCHHHHHHHHhCCH
Confidence 6654321 8999999999999
Q ss_pred cchhhccCccccccccccccCCC
Q psy8807 112 ARLLCDNSDEIHTMQPAAFLKIS 134 (136)
Q Consensus 112 a~iiC~n~d~i~~iQ~~~F~~~~ 134 (136)
|+|||+|+ +|+.||++||..++
T Consensus 550 a~iic~n~-~i~~vq~~~F~~~~ 571 (595)
T 3q9k_A 550 SRLICDNT-HITKVPLHAFQANN 571 (595)
T ss_dssp HHHHHHHS-SCCEEESSTTSCCC
T ss_pred HHHHhcCC-CcccccHhhccCCC
Confidence 99999997 59999999999765
No 2
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=99.97 E-value=2.7e-32 Score=236.78 Aligned_cols=116 Identities=31% Similarity=0.467 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHhhhhh--c---CcHHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhc
Q psy8807 18 IHWELVYSTCYRRAALL--A---DDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDV 92 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~~--~---~~~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~ 92 (136)
+|++.+++|+.++.+.. . .+++|+++||++.+..|+||+|+|||||||||||+||+||++|||+++++|+||...
T Consensus 263 ~g~d~~lrgl~~q~a~~~~~d~~l~~~l~~~lf~~~~~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~ 342 (466)
T 1d2v_C 263 GGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTV 342 (466)
T ss_dssp TCHHHHHHHHHHSEEECCBTTBCSCHHHHTCBTGGGSSSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHH
T ss_pred cCchHHHHHHhhCccccccCchhhhHHHHHHhhcccCccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhc
Confidence 68999999999887652 2 358999999998778899999999999999999999999999999999999999866
Q ss_pred cCcC--------------cc----------------------------------------------CHHHHHHHHhcccc
Q psy8807 93 ISPD--------------LL----------------------------------------------LEDQLAEIKKASLA 112 (136)
Q Consensus 93 ~~~~--------------~i----------------------------------------------t~~QL~eIrk~tla 112 (136)
++++ +| |++|++||||+|||
T Consensus 343 ~~d~~~~~~L~~lY~~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen~~~ft~~ql~ei~~~sl~ 422 (466)
T 1d2v_C 343 LRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLP 422 (466)
T ss_dssp HTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTSTTTSCHHHHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHhCCccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCcccccCCCcccchhhHHHHhCCHH
Confidence 5432 11 89999999999999
Q ss_pred chhhccCccccccccc-cccCCC
Q psy8807 113 RLLCDNSDEIHTMQPA-AFLKIS 134 (136)
Q Consensus 113 ~iiC~n~d~i~~iQ~~-~F~~~~ 134 (136)
+|||+|+ +++.||++ ||..++
T Consensus 423 ~iic~n~-~~~~iq~~~~F~~~~ 444 (466)
T 1d2v_C 423 RIICDNT-GITTVSKNNIFMSNS 444 (466)
T ss_dssp HHHHHHS-SCCEEECSCTTTCCS
T ss_pred HHHHhcC-CCcccCCCccccCCC
Confidence 9999999 59999999 999876
No 3
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.93 E-value=4.8e-27 Score=209.06 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHhhhhhcCcHHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhc--c--
Q psy8807 18 IHWELVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDV--I-- 93 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~~~~~~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~--~-- 93 (136)
+|++.+++||..+.+..++. .+++ ...++||+|+|||||||||||+||+||++|||+++++|+||.+. +
T Consensus 386 ~gid~llrgl~~q~a~~~~~--~~n~-----~~~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~~~~~~~ 458 (587)
T 3nt1_A 386 HGLTQFVESFTRQIAGRVAG--GRNV-----PIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAA 458 (587)
T ss_dssp HHHHHHHHHHHHSBCBCSSS--SSCB-----CGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHSSSHHHH
T ss_pred hhHHHHHHHHHHhhhhcccc--cccC-----chHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCCCHHHHH
Confidence 68999999999998877642 2222 34689999999999999999999999999999999999999742 0
Q ss_pred -------CcCcc-------------------------------------------------CHHH-HHHHHhccccchhh
Q psy8807 94 -------SPDLL-------------------------------------------------LEDQ-LAEIKKASLARLLC 116 (136)
Q Consensus 94 -------~~~~i-------------------------------------------------t~~Q-L~eIrk~tla~iiC 116 (136)
.+++| |.+| +++|||+|||+|||
T Consensus 459 ~L~~lY~~~ddIDL~vGglaE~~~pG~~vGpTf~ci~~qf~l~~~~~~~r~gDrfw~~~~Ft~~qgl~~I~~~sL~~lic 538 (587)
T 3nt1_A 459 ELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLIC 538 (587)
T ss_dssp HHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHHHHHHHHHHHHTSGGGSTTTSSGGGGTSHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhCCHhheeeecccccccCCCCccHHHHHHHHHHHHHHHHHhcCcccCCcccCcCccChHHHHHHHHHCCHHHHHH
Confidence 11222 6788 89999999999999
Q ss_pred ccCccccccccccccCCCC
Q psy8807 117 DNSDEIHTMQPAAFLKISK 135 (136)
Q Consensus 117 ~n~d~i~~iQ~~~F~~~~~ 135 (136)
+|++. +|.++|.+|+.
T Consensus 539 ~N~~~---~p~~~F~~p~~ 554 (587)
T 3nt1_A 539 NNVKG---CPFTSFNVQDP 554 (587)
T ss_dssp HHSTT---CCCCCSBCC--
T ss_pred hCCCC---CCcceeECCCc
Confidence 99985 99999999875
No 4
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.93 E-value=2.1e-26 Score=203.36 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHhhhhhcCcHHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhc--c--
Q psy8807 18 IHWELVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDV--I-- 93 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~~~~~~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~--~-- 93 (136)
+|++.+++|+.++.+..++ ++++. ...++||+|+|||||||||||+||+||++|||+++++|+||.+. +
T Consensus 386 ~g~~~ll~g~~~q~a~~~~--~~~n~-----~~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~d~~~~~ 458 (553)
T 1q4g_A 386 YGVEALVDAFSRQPAGRIG--GGRNI-----DHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAA 458 (553)
T ss_dssp HCHHHHHHHHHHSBCBCSS--SSSCB-----CTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHSSSHHHH
T ss_pred ccHHHHHHHhhhchhhccc--ccccC-----cHHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcCCHHHHH
Confidence 7899999999999888763 23332 34689999999999999999999999999999999999999741 0
Q ss_pred -------CcCcc-------------------------------------------------CHHHHHHHHh-ccccchhh
Q psy8807 94 -------SPDLL-------------------------------------------------LEDQLAEIKK-ASLARLLC 116 (136)
Q Consensus 94 -------~~~~i-------------------------------------------------t~~QL~eIrk-~tla~iiC 116 (136)
.+++| |++|+.||+| +|||+|||
T Consensus 459 ~L~~lY~~~ddiDL~vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~~~~~ft~~ql~ei~~~~sla~iic 538 (553)
T 1q4g_A 459 ELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVC 538 (553)
T ss_dssp HHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTCSGGGGTSHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhcChhhccccccccccccCCCCCccHHHHHHHHHHHHHHHhhCcCCCccccCCCCcCHHHHHHHHHhCCHHHHHH
Confidence 11222 8899999977 69999999
Q ss_pred ccCccccccccccccCCC
Q psy8807 117 DNSDEIHTMQPAAFLKIS 134 (136)
Q Consensus 117 ~n~d~i~~iQ~~~F~~~~ 134 (136)
+|++ .||.++|.+|+
T Consensus 539 ~n~~---~~p~~~F~~p~ 553 (553)
T 1q4g_A 539 LNTK---TCPYVSFHVPD 553 (553)
T ss_dssp TTSS---SCCCCCSBCCC
T ss_pred HcCC---CCCcccccCCC
Confidence 9997 79999999885
No 5
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=58.04 E-value=5 Score=27.78 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhccCcCccCHHHHHHHHhc
Q psy8807 56 RAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPDLLLEDQLAEIKKA 109 (136)
Q Consensus 56 ~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~~~~~~it~~QL~eIrk~ 109 (136)
.|-|.||+++.+||-=++. ...++ .+ +|...+....+|.+|+.-||+.
T Consensus 17 ~srDE~ra~al~lPfs~~e--Iv~lp-v~---efn~lLk~~~Ls~~Ql~~ir~~ 64 (92)
T 1skn_P 17 QSKDEQLASDNELPVSAFQ--ISEMS-LS---ELQQVLKNESLSEYQRQLIRKI 64 (92)
T ss_dssp CCHHHHHHHHTTCSSCHHH--HHHSC-HH---HHHHHHHHSCCCHHHHHHHHHH
T ss_pred cchhHHHHHHhCCCCCHHH--HHHCc-HH---HHHHHHHhCCCCHHHHHHHHHH
Confidence 4679999999999964443 33343 23 4444555677899999887643
No 6
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=49.36 E-value=7.2 Score=26.96 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=32.7
Q ss_pred hHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhccCcCccCHHHHHHHHhc
Q psy8807 55 LRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPDLLLEDQLAEIKKA 109 (136)
Q Consensus 55 L~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~~~~~~it~~QL~eIrk~ 109 (136)
-.+-|.||++..+||-=++- ...++ .. +|...+....+|.+|++-||.+
T Consensus 20 ~~srDE~ra~~l~lPfs~~~--Iv~lp-v~---efn~ll~~~~Ls~~Ql~lIrdi 68 (91)
T 2kz5_A 20 AGSRDERRALAMKIPFPTDK--IVNLP-VD---DFNELLARYPLTESQLALVRDI 68 (91)
T ss_dssp CCCHHHHHHHHHTCSSCHHH--HHHSC-HH---HHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhchhHHHHHHhCCCCCHHH--HHHCc-HH---HHHHHHHHcCCCHHHHHHHHHH
Confidence 35679999999999954443 33443 23 4444455567799999887643
No 7
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=30.85 E-value=20 Score=22.21 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.3
Q ss_pred chHHHHHHhhhccCCCcHH
Q psy8807 54 DLRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 54 DL~AinIQRGRDHGlp~Yn 72 (136)
-.++.-|.|+|..||=||.
T Consensus 34 R~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 34 RQLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 3577899999999999985
No 8
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.29 E-value=40 Score=24.12 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.2
Q ss_pred cchHHHHHHh----hhccCCC-cHHHHHHH
Q psy8807 53 RDLRAIDVQR----GRDHGLA-SYNDYRAF 77 (136)
Q Consensus 53 ~DL~AinIQR----GRDHGlp-~Yn~~R~~ 77 (136)
-|.-.+.|+| .|.||+| +|+.|-..
T Consensus 55 R~fR~LWI~RINAa~R~~gl~~sYs~fi~~ 84 (119)
T 3bbo_S 55 RDFRRLWITRINAAIRERGVYYNYSKFIHD 84 (119)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4666777776 6999998 89888654
No 9
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=24.63 E-value=31 Score=22.66 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.5
Q ss_pred chHHHHHHhhhccCCCcHH
Q psy8807 54 DLRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 54 DL~AinIQRGRDHGlp~Yn 72 (136)
-.++.-|.|+|..||=||.
T Consensus 53 R~l~~AIKrAR~~gLlP~~ 71 (75)
T 3i1m_R 53 RQLARAIKRARYLSLLPYT 71 (75)
T ss_dssp HHHHHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHHHHhccCCcC
Confidence 4578899999999999985
No 10
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.20 E-value=41 Score=23.08 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhccCcCccCHHHHHHHHh
Q psy8807 56 RAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPDLLLEDQLAEIKK 108 (136)
Q Consensus 56 ~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~~~~~~it~~QL~eIrk 108 (136)
.|-|=+|+|..+||-=++- ...|+ .+.|.. .+....+|++|++-||.
T Consensus 21 ~srDE~ra~~~~LPFsvdq--IvnLp-v~eFn~---lL~~~~Lt~~Ql~lIrd 67 (90)
T 2lz1_A 21 LTRDELRAKALHIPFPVEK--IINLP-VVDFNE---MMSKEQFNEAQLALIRD 67 (90)
T ss_dssp CCHHHHHHHHHTCSSCHHH--HHHSC-HHHHHH---HHHHSCCCHHHHHHHHH
T ss_pred cchhHHHHHHcCCCCCHHH--HHHCC-HHHHHH---HHHHcCCCHHHHHHHHH
Confidence 4678899999999964443 33444 344444 44455679999998863
Done!