Query psy8807
Match_columns 136
No_of_seqs 126 out of 717
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 19:46:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8807.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8807hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1cxp.1 a.93.1.2 (A:,C:) Myelo 100.0 3.4E-32 2.5E-36 237.9 7.6 119 17-135 366-549 (570)
2 d1q4ga1 a.93.1.2 (A:74-584) Pr 99.9 3E-25 2.2E-29 192.5 8.5 107 18-134 344-511 (511)
3 d1cvua1 a.93.1.2 (A:74-583) Pr 99.9 1.7E-24 1.2E-28 187.8 6.1 101 18-132 345-510 (511)
4 d1sknp_ a.37.1.1 (P:) Skn-1 {C 49.0 8.1 0.00059 24.1 3.3 47 57-109 4-50 (74)
5 d2qalr1 a.4.8.1 (R:19-73) Ribo 30.2 10 0.00072 22.1 1.4 19 54-72 34-52 (55)
6 d1af7a1 a.58.1.1 (A:11-91) Che 30.2 12 0.00086 22.4 1.8 36 56-91 41-77 (81)
7 d1ks9a1 a.100.1.7 (A:168-291) 27.3 9.5 0.00069 24.4 1.0 15 60-74 98-113 (124)
8 d2uubr1 a.4.8.1 (R:19-88) Ribo 23.7 16 0.0012 22.2 1.5 18 55-72 47-64 (70)
9 d1jpdx2 d.54.1.1 (X:-2-113) L- 23.0 13 0.00098 22.9 1.1 34 38-72 79-112 (116)
10 d1sjda2 d.54.1.1 (A:1-125) N-a 18.8 16 0.0012 22.4 0.7 21 51-72 101-121 (125)
No 1
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=3.4e-32 Score=237.88 Aligned_cols=119 Identities=29% Similarity=0.415 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHhhhhh-----cCcHHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhh
Q psy8807 17 VIHWELVYSTCYRRAALL-----ADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91 (136)
Q Consensus 17 ~~g~~~~~~g~~~~~~~~-----~~~~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~ 91 (136)
-.|++.+++|+..+.+.. ..+++|+++||++...+|+||+|+|||||||||||+||+||++|||+++++|+||..
T Consensus 366 ~~~~d~~~~g~~~~~a~~~~~d~~~~~~l~~~lf~~~~~~g~DL~alnIqRGRd~Glp~Yn~~R~~~gL~~~~sf~dl~~ 445 (570)
T g1cxp.1 366 EGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGT 445 (570)
T ss_dssp TTCSHHHHHHHHSSEEECCBTTBCSCHHHHTCBTTTTSSSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHH
T ss_pred ccChhHHHHHHhhCchhhcccchhhhHHHHHHhhccCcccchhhHHHHHHHHHhcCCCCHHHHHHHcCCCCCCCHHHHhh
Confidence 378999999998886642 345899999999888899999999999999999999999999999999999999987
Q ss_pred ccCcCc--------------c----------------------------------------------CHHHHHHHHhccc
Q psy8807 92 VISPDL--------------L----------------------------------------------LEDQLAEIKKASL 111 (136)
Q Consensus 92 ~~~~~~--------------i----------------------------------------------t~~QL~eIrk~tl 111 (136)
.++++. | |++||+||||+||
T Consensus 446 ~~~~~~~~~~L~~lY~~vddIDL~vG~laE~~~~G~~~Gptf~~ii~~qF~rlr~gDRF~yen~~~ft~~ql~~i~~~tl 525 (570)
T g1cxp.1 446 VLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISL 525 (570)
T ss_dssp HHTCHHHHHHHHHHHSSTTSSCHHHHHHHSCCCTTSSSCHHHHHHHHHHHHHHHHTCTTCTTSTTTSCHHHHHHHTTCCH
T ss_pred hcCCHHHHHHHHHHhCChhHhhHhcchhcCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCeecCCCCCCHHHHHHHHhcCH
Confidence 765432 1 9999999999999
Q ss_pred cchhhccCccccccccccccCCCC
Q psy8807 112 ARLLCDNSDEIHTMQPAAFLKISK 135 (136)
Q Consensus 112 a~iiC~n~d~i~~iQ~~~F~~~~~ 135 (136)
|+|||+|++.+..+|+++|..++.
T Consensus 526 a~iic~n~~~~~~~q~~~f~~~~~ 549 (570)
T g1cxp.1 526 PRIICDNTGITTVSKNNIFMSNSY 549 (570)
T ss_dssp HHHHHHHSSCCEEECSCTTTCCST
T ss_pred HHHhhcCCCCccccCccceeCCCC
Confidence 999999998666678999988763
No 2
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=99.91 E-value=3e-25 Score=192.49 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHhhhhhcCcHHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhc--c--
Q psy8807 18 IHWELVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDV--I-- 93 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~~~~~~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~--~-- 93 (136)
.|++.+++|+.++.+..++. +......++||+++|||||||||||+||+||++|||+++++|+||.+. +
T Consensus 344 ~g~~~l~~gl~~q~a~~~~~-------~~~~~~~~~dl~~~~IqRgRd~Glp~YN~~R~~~gL~~~~sFedl~~d~~~~~ 416 (511)
T d1q4ga1 344 YGVEALVDAFSRQPAGRIGG-------GRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAA 416 (511)
T ss_dssp HCHHHHHHHHHHSBCBCSSS-------SSCBCTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHSSSHHHH
T ss_pred cchHHHHHHHhhCccccccc-------cccCChhHHHHHHHHHHHHHhcCCCcHHHHHHHcCCCcCCCHHHhCCCHHHHH
Confidence 58999999999988876532 122345789999999999999999999999999999999999999751 0
Q ss_pred -------CcCcc--------------------------------------------------CHHHHHHHHhccccchhh
Q psy8807 94 -------SPDLL--------------------------------------------------LEDQLAEIKKASLARLLC 116 (136)
Q Consensus 94 -------~~~~i--------------------------------------------------t~~QL~eIrk~tla~iiC 116 (136)
++++| ++.||++|||+|||+|||
T Consensus 417 ~L~~lYg~vddVDL~vG~laE~~~~G~~~GpT~~~ii~~qf~r~~~gDRf~~e~~~~~~~f~~~~ql~~i~~~tL~~iic 496 (511)
T d1q4ga1 417 ELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVC 496 (511)
T ss_dssp HHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTCSGGGGTSHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhCCHhHhhHhhchhccccCCCCCCCHHHHHHHHHHHHHHHhcCCccccCcCCCCCCCCHHHHHHHHHCCHHHHHH
Confidence 01122 789999999999999999
Q ss_pred ccCccccccccccccCCC
Q psy8807 117 DNSDEIHTMQPAAFLKIS 134 (136)
Q Consensus 117 ~n~d~i~~iQ~~~F~~~~ 134 (136)
+|++++ |..+|.+|+
T Consensus 497 ~N~~~~---~~~~f~vpd 511 (511)
T d1q4ga1 497 LNTKTC---PYVSFHVPD 511 (511)
T ss_dssp TTSSSC---CCCCSBCCC
T ss_pred hCCCCC---CcccccCCC
Confidence 999865 455576663
No 3
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89 E-value=1.7e-24 Score=187.82 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhhhhhcCcHHHHhhcccC--CCCCCcchHHHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhccCc
Q psy8807 18 IHWELVYSTCYRRAALLADDMVITDFLFRN--GKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISP 95 (136)
Q Consensus 18 ~g~~~~~~g~~~~~~~~~~~~~l~~~LF~~--~~~~G~DL~AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~~~~ 95 (136)
.|++.+++|+.++.+.. +|+. ....+.||+|+|||||||||||+||+||++|||+++++|+||.+ ++
T Consensus 345 ~gl~~~~~~~~~q~a~~---------~~~~~n~~~~~~dl~al~IqRgRd~Glp~yN~~R~~~gL~~~~sFedl~~--d~ 413 (511)
T d1cvua1 345 HGLTQFVESFTRQIAGR---------VAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EK 413 (511)
T ss_dssp HHHHHHHHHHHHSBCBC---------STTSSCBCGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SS
T ss_pred cCHHHHHHHHHHHHhhh---------cccccCCCchhhhHHHhhhHhHhhcCCCcHHHHHHHcCCCCCCCHHHhCC--CH
Confidence 57889999987776544 3322 23457899999999999999999999999999999999999975 22
Q ss_pred C-------------cc-------------------------------------------------C-HHHHHHHHhcccc
Q psy8807 96 D-------------LL-------------------------------------------------L-EDQLAEIKKASLA 112 (136)
Q Consensus 96 ~-------------~i-------------------------------------------------t-~~QL~eIrk~tla 112 (136)
+ +| | +.||++|||+|||
T Consensus 414 ~~~~~L~~lY~~vddVDL~vG~laE~~~~g~~~GpT~~~ii~~qf~r~r~gDRf~~e~~~~p~~ft~~~ql~~i~~~tLa 493 (511)
T d1cvua1 414 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQ 493 (511)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHHHHHHHHHHHHTSGGGSTTTSSGGGGTSHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhCChhHhhhhhchhccCcCCCCCCCHHHHHHHHHHHHHHHhcCCccccCCCCCCCcCcHHHHHHHHHCcHH
Confidence 2 12 4 6799999999999
Q ss_pred chhhccCccccccccccccC
Q psy8807 113 RLLCDNSDEIHTMQPAAFLK 132 (136)
Q Consensus 113 ~iiC~n~d~i~~iQ~~~F~~ 132 (136)
+|||+|+++ ++..+|.+
T Consensus 494 ~iic~N~~~---~p~~~f~v 510 (511)
T d1cvua1 494 SLICNNVKG---CPFTSFNV 510 (511)
T ss_dssp HHHHHHSTT---CCCCCSBC
T ss_pred HHHHhCCCC---CCCccccC
Confidence 999999986 45666653
No 4
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=48.96 E-value=8.1 Score=24.14 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHhhhccCCCcHHHHHHHhCCCCCCChhhHhhccCcCccCHHHHHHHHhc
Q psy8807 57 AIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPDLLLEDQLAEIKKA 109 (136)
Q Consensus 57 AinIQRGRDHGlp~Yn~~R~~Cgl~~~~sF~dL~~~~~~~~it~~QL~eIrk~ 109 (136)
|-|=+|+++.+||-=++ +...|| ...|.+ .+....+|++|++-||.+
T Consensus 4 srde~ra~~~~iPfs~~--~Iv~lp-v~eFne---~l~~~~Lte~Ql~lirDI 50 (74)
T d1sknp_ 4 SKDEQLASDNELPVSAF--QISEMS-LSELQQ---VLKNESLSEYQRQLIRKI 50 (74)
T ss_dssp CHHHHHHHHTTCSSCHH--HHHHSC-HHHHHH---HHHHSCCCHHHHHHHHHH
T ss_pred chHHHHHHHcCCCccHH--HHHHCC-HHHHHH---HHHhCCCCHHHHHHHHHH
Confidence 45779999999995443 333444 344544 444556799999887643
No 5
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=30.21 E-value=10 Score=22.06 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.5
Q ss_pred chHHHHHHhhhccCCCcHH
Q psy8807 54 DLRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 54 DL~AinIQRGRDHGlp~Yn 72 (136)
-.++--|.|+|..||=||.
T Consensus 34 r~l~~aIkrAR~~gLlP~~ 52 (55)
T d2qalr1 34 RQLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHHTTSSCSS
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 4678899999999999985
No 6
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=30.17 E-value=12 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHhhhccCCCcHHHHHHHhCCCC-CCChhhHhh
Q psy8807 56 RAIDVQRGRDHGLASYNDYRAFCGLPR-AYKFEDFLD 91 (136)
Q Consensus 56 ~AinIQRGRDHGlp~Yn~~R~~Cgl~~-~~sF~dL~~ 91 (136)
..-=-.|-|.+|+++|.+|..++--.+ ..-|+.|.+
T Consensus 41 ~~RL~~rm~~~g~~s~~~Y~~~L~~~~~~~e~~~li~ 77 (81)
T d1af7a1 41 YNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFIN 77 (81)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 344456889999999999988874332 233655544
No 7
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=27.29 E-value=9.5 Score=24.41 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=10.1
Q ss_pred HHhhhccCCC-cHHHH
Q psy8807 60 VQRGRDHGLA-SYNDY 74 (136)
Q Consensus 60 IQRGRDHGlp-~Yn~~ 74 (136)
+.+|+.||+| |+|+.
T Consensus 98 v~~a~~~gi~tP~~~~ 113 (124)
T d1ks9a1 98 LRRARAHGIAVPENTR 113 (124)
T ss_dssp HHHHHHHTCCCHHHHH
T ss_pred HHHHHHhCCCCcHHHH
Confidence 5667778887 66654
No 8
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=23.66 E-value=16 Score=22.21 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.7
Q ss_pred hHHHHHHhhhccCCCcHH
Q psy8807 55 LRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 55 L~AinIQRGRDHGlp~Yn 72 (136)
.++--|.|+|.+||=||.
T Consensus 47 ~l~~aIkrAR~~gLlPy~ 64 (70)
T d2uubr1 47 ILAKTIKRARILGLLPFT 64 (70)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhccccc
Confidence 567789999999999985
No 9
>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=22.96 E-value=13 Score=22.92 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=23.1
Q ss_pred HHHHhhcccCCCCCCcchHHHHHHhhhccCCCcHH
Q psy8807 38 MVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 38 ~~l~~~LF~~~~~~G~DL~AinIQRGRDHGlp~Yn 72 (136)
..+.+.+..+....++|+|-.|+ .||..|+|-|-
T Consensus 79 ~~l~~~~~~~~a~aaid~AlwDl-~~K~~~~pl~~ 112 (116)
T d1jpdx2 79 EELQKILPAGAARNALDCALWDL-AARRQQQSLAD 112 (116)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHH-HHHTTTCCHHH
T ss_pred HHHHhhhhcchHHHHHHHHHHHH-HHHHhCCcHHH
Confidence 44444333222335899999999 89999999763
No 10
>d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Probab=18.81 E-value=16 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.6
Q ss_pred CCcchHHHHHHhhhccCCCcHH
Q psy8807 51 FGRDLRAIDVQRGRDHGLASYN 72 (136)
Q Consensus 51 ~G~DL~AinIQRGRDHGlp~Yn 72 (136)
.++|+|..|+ .||..|+|-|.
T Consensus 101 aaid~AlwDl-~ak~~~~Pl~~ 121 (125)
T d1sjda2 101 GALEMAVLDA-ELRAHERSFAA 121 (125)
T ss_dssp HHHHHHHHHH-HHHHTTCBHHH
T ss_pred HHHHHHHHHH-HHHHcCCcHHH
Confidence 4899999999 89999999774
Done!