RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8807
(136 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 101 bits (255), Expect = 1e-26
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 36 DDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISP 95
D + T F FR G PFG DL A+++QRGRDHGL YNDYR FCGLPRA F+D L ++SP
Sbjct: 234 TDELTTHFFFRGGNPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIMSP 293
Query: 96 DLLLEDQLAEI 106
+ + +L +
Sbjct: 294 ETI--QKLRRL 302
Score = 42.6 bits (101), Expect = 2e-05
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 100 EDQLAEIKKASLARLLCDN 118
QL EI+K SLAR++CDN
Sbjct: 360 PAQLNEIRKVSLARIICDN 378
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 100 bits (252), Expect = 8e-26
Identities = 53/165 (32%), Positives = 67/165 (40%), Gaps = 65/165 (39%)
Query: 31 AALLADDMV---ITDFLF--RNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYK 85
A L D+ + + + LF RN G DL A+++QRGRDHGL YN+YR FCGL A
Sbjct: 357 PAELLDNSLSDELRNRLFGPRNFPGSGLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATS 416
Query: 86 FEDFLDVI--------------SPD-------LLLED----------------------- 101
FED D I PD L E
Sbjct: 417 FEDLTDEIGDEELAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLR 476
Query: 102 ----------------QLAEIKKASLARLLCDNSDEIHTMQPAAF 130
QL EI+K +LAR++CDN+ I +QP AF
Sbjct: 477 DGDRFWYENPGVFTGEQLEEIRKTTLARVICDNTPGITRVQPNAF 521
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 88.5 bits (220), Expect = 1e-21
Identities = 49/152 (32%), Positives = 59/152 (38%), Gaps = 60/152 (39%)
Query: 40 ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPD--- 96
+T+ LF DL A+++QRGRDHGL YNDYR FC L A FED + I D
Sbjct: 276 LTEKLFEMAHEVALDLAALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKNDDVR 335
Query: 97 ------------------LLLED------------------------------------- 101
+LED
Sbjct: 336 EKLKRLYGHPGNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYENPGVFS 395
Query: 102 --QLAEIKKASLARLLCDNSDEIHTMQPAAFL 131
QL +IKK SLAR+LCDN D I +Q FL
Sbjct: 396 PAQLTQIKKTSLARVLCDNGDNITRVQEDVFL 427
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 67.1 bits (164), Expect = 5e-14
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 64/160 (40%)
Query: 35 ADDMV---ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91
DD++ +T+ LF DL ++++QRGRDHGL YND+R FCGLPR D
Sbjct: 383 PDDLMNEELTEKLFVLSNSSTLDLASLNLQRGRDHGLPGYNDWREFCGLPRLATPADLAT 442
Query: 92 VIS-----------------PDL----LLED----------------------------- 101
I+ D+ L ED
Sbjct: 443 AIADQAVADKILDLYKHPDNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFW 502
Query: 102 ----------QLAEIKKASLARLLCDNSDEIHTMQPAAFL 131
Q E++K SL+R++CDN+ + + P AF
Sbjct: 503 WENSNVFTDAQRRELRKHSLSRVICDNTG-LTRVPPDAFQ 541
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 61.6 bits (150), Expect = 4e-12
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 36 DDMVITD---FLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDV 92
D ++ D FLF G DL A+++QRGRDHGL SYN R GLP F D
Sbjct: 266 DTFIVDDVRNFLFGPPGAGGFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSD---- 321
Query: 93 ISPDLLLEDQLAEI 106
I+ D L +LA +
Sbjct: 322 ITSDPDLAARLASV 335
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 59.7 bits (145), Expect = 1e-11
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 22 LVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLP 81
L+ + A L+ ++ FLF + G DL A+++QRGRD GL SYN+ R F GL
Sbjct: 216 LLRGFLRQPAGLIDQNVDDVMFLFGPLEGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLK 275
Query: 82 RAYKFEDFLD 91
F+D L
Sbjct: 276 PPTSFQDILT 285
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 57.4 bits (139), Expect = 1e-10
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 29 RRAALLA-DDMV---ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLP 81
A L + M+ + + LF+ K G DL A+++QRGRDHGL YN +R FCGL
Sbjct: 237 TPAKLNNQNQMLVDELRERLFQQTKRMGLDLAALNLQRGRDHGLPGYNAWRRFCGLS 293
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 94 SPDLLLEDQLAEIKKASLARLLCDNS 119
+P + E+Q ++ SL+R++CDN+
Sbjct: 366 NPGVFTEEQRESLRSVSLSRIICDNT 391
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 49.6 bits (119), Expect = 6e-08
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 36 DDMVIT----DFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDF 89
+D +I D+LF + RDL A+++QRGRDHGL YN R GLP + D
Sbjct: 362 EDNIIVEDLRDYLFGPLEFSRRDLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDI 419
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 43.4 bits (103), Expect = 9e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 54 DLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFED 88
DL AID+ R R+ G+ YN++R LP A FED
Sbjct: 341 DLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFED 375
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 37.6 bits (88), Expect = 9e-04
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 54 DLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPDLLLEDQLAE 105
++R+I+ GR LAS+NDYR GLP FE+ ++ D + +L E
Sbjct: 361 EVRSIEQ--GRKLRLASFNDYRKRFGLPPYTSFEE----LTGDPEVAAELEE 406
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 55 LRAIDV---QRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISPD 96
L+ I++ + R+ +A+ N++R F GL FED I+ D
Sbjct: 372 LKVIEILGILQAREWNVATLNEFRKFFGLKPYETFED----INSD 412
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 33.2 bits (76), Expect = 0.029
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 37 DMVITDFLFRN---GKPFGRDLRAIDVQRGRDHGLASYNDYRA 76
D +TD L RN G P DL A+++ RGRD GL + N+ RA
Sbjct: 356 DEFVTDAL-RNNLVGLPL--DLAALNIARGRDTGLPTLNEARA 395
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 30.5 bits (69), Expect = 0.22
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 54 DLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91
D+ A+++ R R+ G+A YN++R + K+ED D
Sbjct: 472 DMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD 509
>gnl|CDD|226070 COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic
ion transport and metabolism].
Length = 522
Score = 30.5 bits (69), Expect = 0.23
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 4 HTDTNHMQSCLTSVIHWELVYSTCYRRAALLADDMVI--TDFLFR-NGKPFGRDLRAIDV 60
+ S WE+ Y T Y+ A D VI D+++ P L +
Sbjct: 137 GRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKN 196
Query: 61 QRGRDHGLA---SYNDYR 75
H + +DYR
Sbjct: 197 VVVTQHKSKEIETLDDYR 214
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 29.2 bits (66), Expect = 0.73
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 23 VYSTCYRRAALLADDMVITDFLFRNGKPFG 52
V C + ALL D VI F R GK FG
Sbjct: 239 VKEICQKHGALLISDEVICGF-GRTGKAFG 267
>gnl|CDD|222734 pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp. A
member of the ATP-grasp fold predicted to be involved in
the biosynthesis of cell surface polysaccharides.
Length = 284
Score = 28.5 bits (64), Expect = 1.0
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 29 RRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAY--KF 86
RR L +D I LF G P + + A +++ AFC + K
Sbjct: 18 RRYTELFEDKSIFGELFHEGLPIPQIIFQGGRDFLDLRSHADESEFVAFCRNHKPLFVKP 77
Query: 87 EDF---LDVISPDLLLEDQLAEIKKASLARLLCDNSDE 121
D + + L + E K +L +LL DN
Sbjct: 78 VDGMGGKGIEKLE-LDDTVSKERKLIALYKLLEDNEKG 114
>gnl|CDD|233584 TIGR01817, nifA, Nif-specific regulatory protein. This model
represents NifA, a DNA-binding regulatory protein for
nitrogen fixation. The model produces scores between the
trusted and noise cutoffs for a well-described NifA
homolog in Aquifex aeolicus (which lacks nitrogenase),
for transcriptional activators of alternative
nitrogenases (VFe or FeFe instead of MoFe), and
truncated forms [Central intermediary metabolism,
Nitrogen fixation, Regulatory functions, DNA
interactions].
Length = 534
Score = 27.4 bits (61), Expect = 2.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 27 CYRRAALLADDMVIT--DFLFRNGKPF 51
C R A L+ IT DF ++G+
Sbjct: 420 CLERTATLSRSGTITRSDFSCQSGQCL 446
>gnl|CDD|221061 pfam11288, DUF3089, Protein of unknown function (DUF3089). This
family of proteins has no known function but appears to
have an alpha/beta hydrolase domain and so is likely to
be enzymatic.
Length = 192
Score = 25.7 bits (57), Expect = 7.6
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 23 VYSTCYRRAALLADDMVITDFLFRNGK--PFGRDLRAIDVQRGRDHGLASYNDYRAF 77
V++ YR+A L A FL + DL DV+R D LA N R F
Sbjct: 48 VFAPRYRQATLGA-------FLATDRGDASAALDLAYSDVRRAFDAYLAHDNGGRPF 97
>gnl|CDD|165268 PHA02962, PHA02962, hypothetical protein; Provisional.
Length = 722
Score = 26.0 bits (57), Expect = 9.2
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 59 DVQRGRDHGLASYNDYRAFCGLPRAY--KFEDFLDVISPDLLLEDQLAEIKKASLAR 113
D+ R HG S+ND +P K D PD +L Q+ +I + +
Sbjct: 549 DIGRLFRHGFISFNDNHFGKWIPSLNSSKILDHFQYNGPDYILSWQIDKIDFKAFVK 605
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 66 HGLASYNDYRAFCGLPRAYKFEDFLDVISPDL 97
+ S + CG+PR F F D ++ DL
Sbjct: 211 QAIPSTRSENSTCGIPREDAFHIFRDPVTSDL 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.422
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,146,320
Number of extensions: 669442
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 40
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)