RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8807
(136 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 79.0 bits (194), Expect = 2e-18
Identities = 18/149 (12%), Positives = 31/149 (20%), Gaps = 61/149 (40%)
Query: 43 FLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRA------------------- 83
RN + + + + R+ S N+YR L
Sbjct: 404 AGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKAL 463
Query: 84 YKFEDFLD----------------------VISPD--------------------LLLED 101
Y D ++ + +P E
Sbjct: 464 YSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEV 523
Query: 102 QLAEIKKASLARLLCDNSDEIHTMQPAAF 130
I AS+ L+C+N
Sbjct: 524 GFKIINTASIQSLICNNVKGCPFTSFNVQ 552
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 72.9 bits (178), Expect = 3e-16
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 40 ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLDVISP 95
I + LF G DL A+++QR RDHGL YN +R FCGLP+ V+
Sbjct: 290 IRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRN 345
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 70.8 bits (172), Expect = 2e-15
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 21 ELVYSTCYRRAALLADDMVITD----FLFR-NGKPFGRDLRAIDVQRGRDHGLASYNDYR 75
LV +++ L+ D ++T LF+ K G DL AI++QR RDHG+ YN +R
Sbjct: 394 PLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWR 453
Query: 76 AFCGLPRAYKFEDFLDVISPDLLLE 100
FCGL + + V+ +L +
Sbjct: 454 GFCGLSQPKTLKGLQTVLKNKILAK 478
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 68.5 bits (167), Expect = 9e-15
Identities = 20/145 (13%), Positives = 34/145 (23%), Gaps = 61/145 (42%)
Query: 43 FLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCG-------------------LPRA 83
RN + ++ R L +N+YR G L
Sbjct: 404 GGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEEL 463
Query: 84 YKFEDFLD----------------------VISPD--------------------LLLED 101
Y D L+ + +P E
Sbjct: 464 YGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEV 523
Query: 102 QLAEIKKASLARLLCDNSDEIHTMQ 126
+K A+L +L+C N+ +
Sbjct: 524 GFNLVKTATLKKLVCLNTKTCPYVS 548
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 32.1 bits (74), Expect = 0.036
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 41 TDFLFRNGKPFGRDLRAIDVQRGRDH 66
T F FR+GK + + D+
Sbjct: 214 TGFDFRSGKQLKESGKDAEELLDLDN 239
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 28.7 bits (65), Expect = 0.52
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 41 TDFLFRNGKPFGRDLRAIDVQ----RGRDH 66
TD FR K + Q +G DH
Sbjct: 215 TDLDFRQEKQLSNAFNSNMEQVQLVKGIDH 244
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 28.3 bits (64), Expect = 0.75
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 41 TDFLFRNGKPFGRDLRAIDVQ----RGRDH 66
T F FR K G L + D Q G DH
Sbjct: 215 TAFDFRKTKRIGDALNSDDSQIKLRNGLDH 244
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 28.2 bits (62), Expect = 1.0
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 19 HWELVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLAS------YN 72
E+ + RR AL D V T FR G G + RA D + +G+
Sbjct: 68 PIEIHLTLD-RRRALDGADFVTT--QFRVG---GLEARAKDERIPLKYGVIGQETNGPGG 121
Query: 73 DYRAFCGLPRAYKFEDFLDVISPD 96
++ +P ++ + PD
Sbjct: 122 LFKGLRTIPVILDIIRDMEELCPD 145
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 86 FEDFLDVISPDLLLEDQLAEIKKA 109
F +FL +++ + D EI++A
Sbjct: 367 FPEFLTMMARKMKDTDSEEEIREA 390
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 25.8 bits (57), Expect = 3.6
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 86 FEDFLDVISPDLLLEDQLAEIKKASLARLLCDNSD 120
+ED L V++ + +E+ ++E+ K LL D
Sbjct: 22 YEDMLPVMAEKMDVEEFVSELCKGF--SLLADPER 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 105
Score = 25.3 bits (55), Expect = 4.2
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 18 IHWELVYST---CYRRAALLADDMVITDFLFRNG 48
I W V+ T L D + D+ RN
Sbjct: 54 ISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 26.0 bits (58), Expect = 5.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 41 TDFLFRNGKPFGRDLRAIDVQRGRDH 66
T F R G+ L+ + G DH
Sbjct: 222 TAFDLRKPVELGKHLQDFHLN-GFDH 246
>1m8r_A Phospholipase A2; phopholipase A2-metal cation complex, three
alpha, two beta, hydrolase; 1.90A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1m8s_A 1bk9_A* 1psj_A 1ijl_A
1pp2_R
Length = 124
Score = 25.3 bits (55), Expect = 5.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 66 HGLASYNDYRAFCGLPRAYKFEDFLD 91
G+ Y++Y +CG + +D D
Sbjct: 16 SGMQWYSNYGCYCGWGGQGRPQDATD 41
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 25.4 bits (55), Expect = 5.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 66 HGLASYNDYRAFCGLPRAYKFEDFLD 91
+ + +Y Y CG+ + D D
Sbjct: 16 NPVKNYGLYGCNCGVGGRGEPLDATD 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 5.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 4 HTDTNHMQSCLTSVIHWELVYSTCYRRAALLADDMVITDFLFRNGKPFGRDLRAID 59
H+ + + +I+ +LV + + A D+ I + +G DLR +
Sbjct: 428 HSH--LLVPA-SDLINKDLVKNNV----SFNAKDIQIPVYDTFDGS----DLRVLS 472
>2v0x_A Lamina-associated polypeptide 2 isoforms alpha/zeta; alternative
splicing, nuclear protein, phosphorylation, chromosomal
protein, coiled coil; 2.2A {Mus musculus}
Length = 235
Score = 25.6 bits (55), Expect = 6.3
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 14 LTSVIHWELVYSTCYRRAALL-------ADDMVITDFLFRNGKPFGRDLRAIDVQRGRDH 66
+ + ST RR L A +T F+ G FG ++ + +RG
Sbjct: 176 EVRMSACAMGSSTMGRRYLWLKDCKISPASKNKLTVAPFKGGTLFGGEVHKVIKKRGNKQ 235
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide;
transferase; 2.30A {Saccharomyces cerevisiae} SCOP:
a.60.8.2
Length = 187
Score = 25.3 bits (54), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 97 LLLEDQLAEIKKASLARLLCDNSDEIHTMQPAAFLKISKE 136
LL L + A L L CD +DE T+ P+ KIS +
Sbjct: 132 LLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDD 171
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 24.7 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 86 FEDFLDVISPDLLLEDQLAEIKKA 109
F DFL V++ + +D EI KA
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILKA 84
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 24.8 bits (55), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 86 FEDFLDVISPDLLLEDQLAEIKKA 109
++DF V+ +L D L EIK+A
Sbjct: 78 YDDFYIVMGEKILKRDPLDEIKRA 101
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 25.3 bits (56), Expect = 9.2
Identities = 4/27 (14%), Positives = 4/27 (14%)
Query: 41 TDFLFRNGKPFGRDLRAIDVQRGRDHG 67
F D D D
Sbjct: 222 ATFDSTKPTVLHEDTPVFDCTFIIDAN 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.422
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,199,500
Number of extensions: 130813
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 45
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.6 bits)