RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8807
         (136 letters)



>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 85.9 bits (212), Expect = 3e-21
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 60/155 (38%)

Query: 40  ITDFLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLP------------------ 81
           I + LF      G DL A+++QR RDHGL  YN +R FCGLP                  
Sbjct: 394 IRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLA 453

Query: 82  ----RAYKFEDFLDVI--------------------------------------SPDLLL 99
                 Y   + +D+                                       +  +  
Sbjct: 454 RKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFS 513

Query: 100 EDQLAEIKKASLARLLCDNSDEIHTMQPAAFLKIS 134
             Q   + + SL R++CDN+      +   F+  S
Sbjct: 514 MQQRQALAQISLPRIICDNTGITTVSKNNIFMSNS 548


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 20/143 (13%), Positives = 33/143 (23%), Gaps = 63/143 (44%)

Query: 43  FLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCG-------------------LPRA 83
              RN     + +    + + R+    S N+YR                       L   
Sbjct: 363 AGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKAL 422

Query: 84  YKFEDFLDVISPDLLLED------------------------------------------ 101
           Y   D +++  P LL+E                                           
Sbjct: 423 YSDIDVMELY-PALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGE 481

Query: 102 -QLAEIKKASLARLLCDNSDEIH 123
                I  AS+  L+C+N     
Sbjct: 482 VGFKIINTASIQSLICNNVKGCP 504


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 43  FLFRNGKPFGRDLRAIDVQRGRDHGLASYNDYRAFCGLPRAYKFEDFLD 91
              RN       +    ++  R   L  +N+YR   G+     F++   
Sbjct: 362 GGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG 410



 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 95  PDLLLEDQLAEIKKASLARLLCDNSDEIHTMQP 127
                E     +K A+L +L+C N+     +  
Sbjct: 475 STFGGEVGFNLVKTATLKKLVCLNTKTCPYVSF 507


>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 85  KFEDFLDVISPDLLLEDQLAEIKK------ASLARLLCDNSDEIHTM 125
           +   FLD +     L D     +       A+L  +   +SDE+ T+
Sbjct: 249 RMIMFLDELGNVPELPDTTEHSRTDLSRDLAALHEICVAHSDELRTL 295


>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain
          {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
          Length = 184

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 76 AFCGLPRAYKFEDFLDVISPDLL 98
                R    ++FL+V S  L 
Sbjct: 25 LQGVNLRGVNLQEFLNVTSVHLF 47


>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter
          pylori [TaxId: 210]}
          Length = 125

 Score = 23.5 bits (50), Expect = 8.8
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 18 IHWELVYSTCYRRAALLAD-DMVITDFLFRNGKPFGRDLRAIDVQRGRDHGLASY 71
            + +V+   YRR  L+   +M + + +    K    ++  +   +   H LA  
Sbjct: 12 CKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADI 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,171
Number of extensions: 23770
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 13
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)