BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8808
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 31 PGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
P T ++ +HNR+AT L LNP WD E LYQEARKI+ A I Y ++LP+V+
Sbjct: 132 PELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVL 189
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVEFR---DGRPWPP--AAANKSAVC 138
I +T ++DAS+VYGS++ LA LR + G LAV R +GR P + +
Sbjct: 52 INALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLL 111
Query: 139 DSKNDALPCYQFG 151
+++ +PC+ G
Sbjct: 112 TNRSARIPCFLAG 124
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 31 PGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
P T ++ +HNR+AT L LNP WD E LYQEARKI+ A I Y ++LP+V+
Sbjct: 132 PELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVL 189
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVEFR---DGRPWPP--AAANKSAVC 138
I +T ++DAS+VYGS++ LA LR + G LAV R +GR P + +
Sbjct: 52 INALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLL 111
Query: 139 DSKNDALPCYQFG 151
+++ +PC+ G
Sbjct: 112 TNRSARIPCFLAG 124
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 31 PGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
P T ++ +HNR+AT L LNP WD E LYQEARKI+ A I Y ++LP+V+
Sbjct: 132 PELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVL 189
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVEFR---DGRPWPP--AAANKSAVC 138
I +T ++DAS+VYGS++ LA LR + G LAV R +GR P + +
Sbjct: 52 INALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLL 111
Query: 139 DSKNDALPCYQFG 151
+++ +PC+ G
Sbjct: 112 TNRSARIPCFLAG 124
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 39 MIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
++ +HNR+A L LNPHWD E LYQEARKIL A I + ++LPIV+
Sbjct: 268 LLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G +PP K + C+
Sbjct: 180 INSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+Q G
Sbjct: 240 INTTARVPCFQAG 252
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 39 MIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
++ +HNR+A L LNPHWD E LYQEARKIL A I + ++LPIV+
Sbjct: 268 LLLREHNRLARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G +PP K + C+
Sbjct: 180 INSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+Q G
Sbjct: 240 INTTARVPCFQAG 252
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 39 MIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
++ +HNR+A L LNPHWD E LYQEARKIL A I + ++LPIV+
Sbjct: 268 LLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G +PP K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+Q G
Sbjct: 240 INTTAHVPCFQAG 252
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 39 MIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
++ +HNR+A L LNPHWD E LYQEARKIL A I + ++LPIV+
Sbjct: 268 LLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G +PP K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+Q G
Sbjct: 240 INTTAHVPCFQAG 252
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNPHW+ E LYQEARKIL A I + ++LPIV+
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVL 305
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G + P K + C+
Sbjct: 168 INAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEF 227
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 228 INTTARVPCFLAG 240
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNPHW+ E LYQEARKIL A I + ++LPIV+
Sbjct: 260 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVL 305
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G + P K + C+
Sbjct: 168 INAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEF 227
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 228 INTTARVPCFLAG 240
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNPHW+ E LYQEARKIL A I + ++LPIV+
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G + P K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 240 INTTARVPCFLAG 252
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNPHW+ E LYQEARKIL A I + ++LPIV+
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G + P K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 240 INTTARVPCFLAG 252
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNPHW+ E LYQEARKIL A I + ++LPIV+
Sbjct: 272 EHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVL 317
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++LR + G +AV + G + P K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 240 INTTARVPCFLAG 252
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNP WD E LYQEARKIL A I + ++LPIV+
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVL 317
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++L+ + G +AV + G + P K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 240 INTTARVPCFLAG 252
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 43 KHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
+HNR+A L LNP WD E LYQEARKIL A I + ++LPIV+
Sbjct: 272 EHNRLARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVL 317
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE---FRDGRPWPPAAANKSAVCDS 140
I VT ++DASLVYGS+ LA++L+ + G +AV + G + P K + C+
Sbjct: 180 INAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPSPCEF 239
Query: 141 KNDA--LPCYQFG 151
N +PC+ G
Sbjct: 240 INTTARVPCFLAG 252
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 261 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 320
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 321 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 365
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 192 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 234
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 261 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 320
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 321 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 365
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 192 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 234
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 262 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 321
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 322 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 366
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 235
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 262 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 321
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 322 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 366
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 235
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 262 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 321
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 322 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 366
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 193 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 235
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 269 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 328
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 329 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 373
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 200 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 242
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 293 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 352
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 353 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 397
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 224 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 266
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 269 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 328
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 329 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 373
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 200 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 242
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 273 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQL 332
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 333 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 377
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 204 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 246
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 262 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 317
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 318 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 370
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
+ H +D + +YG + KLR F G+L + G +PP +
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 237
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 262 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 317
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 318 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 370
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
+ H +D + +YG + KLR F G+L + G +PP +
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 237
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 267 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 322
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 323 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 375
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 200 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 242
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 268 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 323
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 324 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 376
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 201 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 243
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 267 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 322
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 323 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 375
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 200 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 242
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 266 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 321
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 322 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 374
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 199 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 241
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 266 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 321
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 322 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 374
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 199 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 241
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 262 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 317
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 318 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 370
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 195 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 237
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 279 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 334
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 335 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 387
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 212 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 254
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +HNR+ +L +P W DE L+Q +R ILI E I ++
Sbjct: 285 GLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY---- 340
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 341 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 393
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 218 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 260
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +HNR+ +L +P W DE L+Q AR ILI E I Y + L
Sbjct: 293 GLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQL 352
Query: 85 PIVVVTHWMDASLVYGSDDELAAKL-REFN 113
+ D L++G+ + ++ EFN
Sbjct: 353 SGYFLQLKFDPELLFGAQFQYRNRIAMEFN 382
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 224 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 266
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI---NYYEWL 84
G PG + +H R+ +L +P W DE L+Q A+ ILI E I Y + L
Sbjct: 261 GLLPGLMLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQL 320
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAV 137
+ D L++G+ + R+A+EF W P + V
Sbjct: 321 SGYFLQLKFDPELLFGAQFQYR--------NRIAMEFNQLYHWHPLMPDSFRV 365
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAA 131
+ H +D +YG + E +LR F G+L + +G +PP+
Sbjct: 192 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 234
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +H R+ +L +P W DE L+Q ++ ILI E I ++
Sbjct: 262 GLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDY---- 317
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 318 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 370
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
+ H +D + +YG + KLR F G+L + G +PP +
Sbjct: 193 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 237
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 28 GCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
G PG + +H R+ +L +P W DE L+Q ++ ILI E I ++
Sbjct: 262 GLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDY---- 317
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSK 141
V H D EL + R+A EF W P + + D +
Sbjct: 318 -VQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQE 370
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 HWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAAN 133
H +D + +YG + KLR F G+L + G +PP +
Sbjct: 195 HGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKD 237
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 88 VVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDG 124
+ T W D+S++YGS+ + ++R + G+L + G
Sbjct: 226 IRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETG 262
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 75 YSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNGGRL 117
Y+ N + + +V++H ++Y D E+A K+ E +GG +
Sbjct: 12 YTSFNPLKKVSGLVISH---GKVIYAGDSEVAKKIVELSGGEI 51
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 30 NPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVV 89
+P Y E++ + K ++ V G + H D + + Q +KI + E + N VV+
Sbjct: 71 HPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVM 130
Query: 90 T 90
T
Sbjct: 131 T 131
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 30 NPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVV 89
+P Y E++ + K ++ V G + H D + + Q +KI + E + N VV+
Sbjct: 70 HPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVM 129
Query: 90 T 90
T
Sbjct: 130 T 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,019,558
Number of Sequences: 62578
Number of extensions: 198305
Number of successful extensions: 525
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 93
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)