Query psy8808
Match_columns 152
No_of_seqs 160 out of 957
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 99.9 6.1E-28 1.3E-32 217.6 5.7 116 1-119 267-479 (719)
2 PF03098 An_peroxidase: Animal 99.9 3.2E-27 6.9E-32 207.5 3.7 117 1-119 106-319 (530)
3 PLN02283 alpha-dioxygenase 99.9 5.2E-22 1.1E-26 177.3 8.0 52 42-93 275-326 (633)
4 KOG2408|consensus 99.1 3.9E-11 8.4E-16 109.2 2.2 105 46-152 262-375 (719)
5 PF03098 An_peroxidase: Animal 98.1 8.7E-07 1.9E-11 78.4 1.0 81 62-152 118-208 (530)
6 PLN02283 alpha-dioxygenase 97.6 3.7E-05 8E-10 69.7 3.4 56 80-152 203-258 (633)
7 PF14043 WVELL: WVELL protein 58.9 20 0.00044 23.9 3.8 55 44-112 4-58 (75)
8 PF10929 DUF2811: Protein of u 44.4 20 0.00043 22.7 2.0 18 52-69 18-35 (57)
9 COG4286 Uncharacterized conser 39.6 29 0.00062 29.0 2.7 39 47-87 145-191 (306)
10 PF10835 DUF2573: Protein of u 34.7 18 0.00039 24.4 0.7 33 44-78 37-69 (82)
11 PF11522 Pik1: Yeast phosphati 22.1 56 0.0012 20.2 1.2 19 63-82 3-21 (51)
12 PF12758 DUF3813: Protein of u 21.8 65 0.0014 20.8 1.5 15 61-75 3-17 (63)
No 1
>KOG2408|consensus
Probab=99.94 E-value=6.1e-28 Score=217.63 Aligned_cols=116 Identities=40% Similarity=0.613 Sum_probs=95.1
Q ss_pred CCCCCcccCCCCCeeeecccCccccCCCCCCCCCchhhchh---------------------------------------
Q psy8808 1 MPDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQ--------------------------------------- 41 (152)
Q Consensus 1 vp~~D~~~~~~~~~c~~~~Rs~~~~~~~c~~~~~~r~q~n~--------------------------------------- 41 (152)
||++||+|...+ .||+|+||.+++..++..+ +|||+|+
T Consensus 267 ~p~~dp~~~~~~-~C~~f~Rs~~~~~~~~~~~--~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~ 343 (719)
T KOG2408|consen 267 IPPNDPYFPSNQ-RCLPFVRSLPACGSGYNLG--PREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFE 343 (719)
T ss_pred cCCCCCccCCcc-cceeceecCCCccccccCC--hhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccc
Confidence 689999998755 9999999999965444555 9999998
Q ss_pred -------------------------------------------------hHHHHHHHHhhhcCCCCCchHHHHHHHHHHH
Q psy8808 42 -------------------------------------------------VKHNRIATVLGHLNPHWDDETLYQEARKILI 72 (152)
Q Consensus 42 -------------------------------------------------r~HN~~a~~l~~~~p~w~de~lf~~aR~i~~ 72 (152)
|||||||.+|+..||||+||+||||||||++
T Consensus 344 ~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~ 423 (719)
T KOG2408|consen 344 NGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVG 423 (719)
T ss_pred cCcccCCCCCCCCccccccCCCCCCcccccCccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999
Q ss_pred Hhhcccccccchhhhhhhccc-ccccc--------CCCCHHHHHhhcccCCCeEEE
Q psy8808 73 AEYSHINYYEWLPIVVVTHWM-DASLV--------YGSDDELAAKLREFNGGRLAV 119 (152)
Q Consensus 73 a~~q~I~~~e~lP~lLgt~~i-D~sl~--------ygss~~~a~~lR~f~~G~L~~ 119 (152)
|++|||||+||||.+||..+- ..|.. .+.+.+++.++.+|.++++.-
T Consensus 424 A~~q~Ity~e~LP~ilG~~~~~~~g~~~gY~~~~dp~IsneFataAfRfgHsli~~ 479 (719)
T KOG2408|consen 424 AQVQHITYNEYLPKLLGAPLKVSLGGYRGYDPNVDPTISNEFATAAFRFGHSLIPP 479 (719)
T ss_pred HHHhhhhHHhhhhhhcCcccccCCccccCcCCCCChhhhhhhhHHHHhhhcccCch
Confidence 999999999999999994433 22333 233345566666677776664
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.93 E-value=3.2e-27 Score=207.48 Aligned_cols=117 Identities=43% Similarity=0.678 Sum_probs=86.7
Q ss_pred CCCCCcccCCCCCeeeecccCccccCCCCCCCCCchhhchh---------------------------------------
Q psy8808 1 MPDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQ--------------------------------------- 41 (152)
Q Consensus 1 vp~~D~~~~~~~~~c~~~~Rs~~~~~~~c~~~~~~r~q~n~--------------------------------------- 41 (152)
||++||+|... .+||+|+||.++.. .|.....+|||+|+
T Consensus 106 ip~~Dp~~~~~-~~c~~~~Rs~~~~~-~~~~~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~ 183 (530)
T PF03098_consen 106 IPPDDPFYRPF-VRCMPFTRSAPAPD-PGQSCSLPREQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPP 183 (530)
T ss_dssp --TTEHHHHHT-TSEE--B-B-BSST-SSS-SSSSTTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEB
T ss_pred cCCCcccccCC-CCCccccccccccc-CCCCCccchhhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccc
Confidence 68999999876 89999999999965 23332338999997
Q ss_pred ------------------------------------------hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhcccc
Q psy8808 42 ------------------------------------------VKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHIN 79 (152)
Q Consensus 42 ------------------------------------------r~HN~~a~~l~~~~p~w~de~lf~~aR~i~~a~~q~I~ 79 (152)
|||||||++|++.||+|+||+|||+||+||+|++|||+
T Consensus 184 ~~~~~~lp~~~~~~~~~~~~f~~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Iv 263 (530)
T PF03098_consen 184 PNGGGLLPSDDPPTDSGCRCFLAGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIV 263 (530)
T ss_dssp BTTBES--B-TSCSSGHHGSB-TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcccc-c---------------cccCCCCHHHHHhhcccCCCeEEE
Q psy8808 80 YYEWLPIVVVTHWMD-A---------------SLVYGSDDELAAKLREFNGGRLAV 119 (152)
Q Consensus 80 ~~e~lP~lLgt~~iD-~---------------sl~ygss~~~a~~lR~f~~G~L~~ 119 (152)
|+||||.+||.+.++ . +..+....|+++++-+|.+.++.-
T Consensus 264 y~E~LP~llG~~~~~~~~~~~~~~g~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~~ 319 (530)
T PF03098_consen 264 YNEYLPALLGPEAMNKFLLPPLNNGYYKGYDPSVDPSISNEFAAAAYRFGHSMIPD 319 (530)
T ss_dssp HHTTHHHHHGHGGHHHHS-G----GCGTTS-TTS--S-BTTH-HHHGGGGGGGS-S
T ss_pred HhhhhhhhcchhhhhhccccccccccccCCCCCCCCchhHHHHHHHHHhhheeehh
Confidence 999999999987652 1 222344567788888887666553
No 3
>PLN02283 alpha-dioxygenase
Probab=99.86 E-value=5.2e-22 Score=177.26 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhcccccccchhhhhhhccc
Q psy8808 42 VKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWM 93 (152)
Q Consensus 42 r~HN~~a~~l~~~~p~w~de~lf~~aR~i~~a~~q~I~~~e~lP~lLgt~~i 93 (152)
|||||||++|+++||+|+||+|||+||+||+|++|||+|+||||.+||+..+
T Consensus 275 REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~ 326 (633)
T PLN02283 275 KEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTL 326 (633)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCccc
Confidence 9999999999999999999999999999999999999999999999987654
No 4
>KOG2408|consensus
Probab=99.08 E-value=3.9e-11 Score=109.15 Aligned_cols=105 Identities=30% Similarity=0.498 Sum_probs=87.9
Q ss_pred HHHHHhhhcCCCCCch-HHHHHHHHHHHHhh-cccccccchhhhhhhccccccccCCCCHHHHHhhcccCC--CeEEEE-
Q psy8808 46 RIATVLGHLNPHWDDE-TLYQEARKILIAEY-SHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNG--GRLAVE- 120 (152)
Q Consensus 46 ~~a~~l~~~~p~w~de-~lf~~aR~i~~a~~-q~I~~~e~lP~lLgt~~iD~sl~ygss~~~a~~lR~f~~--G~L~~~- 120 (152)
.++..+...+|..... .|+..+|...+..- ++..++|+|.++ |+|+|+|++||++...+.+||.|.+ |+|++.
T Consensus 262 C~pi~~p~~dp~~~~~~~C~~f~Rs~~~~~~~~~~~~reQlNq~--T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~ 339 (719)
T KOG2408|consen 262 CFPIKIPPNDPYFPSNQRCLPFVRSLPACGSGYNLGPREQLNQL--TSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDT 339 (719)
T ss_pred ccceecCCCCCccCCcccceeceecCCCccccccCChhhhhccc--cccccchhccCCCHHHHHHHhcccCcccceeecc
Confidence 5556667777877764 69999999887653 589999999865 9999999999999999999999998 788887
Q ss_pred --cCCCCCCCCCCCCCCCCCCCCC--CCCCcccCCC
Q psy8808 121 --FRDGRPWPPAAANKSAVCDSKN--DALPCYQFGK 152 (152)
Q Consensus 121 --~~~g~~~lP~~~~~~~~C~~~~--~~~~CF~aGd 152 (152)
+.++..++|+..+++..|.... ....||.|||
T Consensus 340 ~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD 375 (719)
T KOG2408|consen 340 GLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGD 375 (719)
T ss_pred cccccCcccCCCCCCCCccccccCCCCCCcccccCc
Confidence 3578999999988888897655 4689999998
No 5
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=98.10 E-value=8.7e-07 Score=78.43 Aligned_cols=81 Identities=27% Similarity=0.458 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHh---hcccccccchhhhhhhccccccccCCCCHHHHHhhcc-cCCCeEEEE-----cCCCCCCCCCCC
Q psy8808 62 TLYQEARKILIAE---YSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLRE-FNGGRLAVE-----FRDGRPWPPAAA 132 (152)
Q Consensus 62 ~lf~~aR~i~~a~---~q~I~~~e~lP~lLgt~~iD~sl~ygss~~~a~~lR~-f~~G~L~~~-----~~~g~~~lP~~~ 132 (152)
.|+..+|..+... -+.+ ++|++... |+|+|+|.+||++++.+..||+ +.+|+|++. ..++..+||...
T Consensus 118 ~c~~~~Rs~~~~~~~~~~~~-~req~N~~--T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~ 194 (530)
T PF03098_consen 118 RCMPFTRSAPAPDPGQSCSL-PREQINQA--TSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDD 194 (530)
T ss_dssp SEE--B-B-BSSTSSS-SSS-STTBEE-S--TSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-T
T ss_pred CCcccccccccccCCCCCcc-chhhhccc--cceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCc
Confidence 3555566555422 1223 88999866 9999999999999999999999 999999983 246778899876
Q ss_pred CCC-CCCCCCCCCCCcccCCC
Q psy8808 133 NKS-AVCDSKNDALPCYQFGK 152 (152)
Q Consensus 133 ~~~-~~C~~~~~~~~CF~aGd 152 (152)
.+. +.| .||.|||
T Consensus 195 ~~~~~~~-------~~f~~GD 208 (530)
T PF03098_consen 195 PPTDSGC-------RCFLAGD 208 (530)
T ss_dssp SCSSGHH-------GSB-TSS
T ss_pred ccccccc-------ccccccc
Confidence 221 234 7999998
No 6
>PLN02283 alpha-dioxygenase
Probab=97.64 E-value=3.7e-05 Score=69.66 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=43.4
Q ss_pred cccchhhhhhhccccccccCCCCHHHHHhhcccCCCeEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC
Q psy8808 80 YYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSKNDALPCYQFGK 152 (152)
Q Consensus 80 ~~e~lP~lLgt~~iD~sl~ygss~~~a~~lR~f~~G~L~~~~~~g~~~lP~~~~~~~~C~~~~~~~~CF~aGd 152 (152)
..+++... |+|+|+|.+||++++.+..||+|.+|+|++.. ..++|... + .||.|||
T Consensus 203 ~~~qiN~~--Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~---~~~l~~~~-----~-------~~~~~Gd 258 (633)
T PLN02283 203 KTGSLNIR--TPWWDGSVIYGSNEKGLRRVRTFKDGKLKISE---DGLLLHDE-----D-------GIPISGD 258 (633)
T ss_pred Cccccccc--cceeecccccCCCHHHHHhhhCCCCCccCcCC---CCCCCCCc-----c-------CCcccCc
Confidence 45666544 99999999999999999999999999999853 23555431 1 3888887
No 7
>PF14043 WVELL: WVELL protein
Probab=58.88 E-value=20 Score=23.88 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=39.1
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhcccccccchhhhhhhccccccccCCCCHHHHHhhccc
Q psy8808 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREF 112 (152)
Q Consensus 44 HN~~a~~l~~~~p~w~de~lf~~aR~i~~a~~q~I~~~e~lP~lLgt~~iD~sl~ygss~~~a~~lR~f 112 (152)
+.+++..|-..||..+ |..||.+|-- |..-+-+++-.+|..|.........++.+
T Consensus 4 ~e~Lt~~LlekN~~Ls----~~qArtWVEl----------LWeDFEsTyAKAG~~Y~G~e~te~iV~qw 58 (75)
T PF14043_consen 4 FERLTNELLEKNPMLS----YEQARTWVEL----------LWEDFESTYAKAGRPYQGEEMTERIVRQW 58 (75)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHH----------HHHHHHHHHHHcCCccCcHHHHHHHHHHH
Confidence 6789999999999988 6678887753 33223355668888887776666666655
No 8
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=44.40 E-value=20 Score=22.70 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=14.6
Q ss_pred hhcCCCCCchHHHHHHHH
Q psy8808 52 GHLNPHWDDETLYQEARK 69 (152)
Q Consensus 52 ~~~~p~w~de~lf~~aR~ 69 (152)
-..||+|+-.++|+.|=.
T Consensus 18 ie~hP~WDQ~Rl~~aALa 35 (57)
T PF10929_consen 18 IETHPNWDQYRLFQAALA 35 (57)
T ss_pred HHcCCCchHHHHHHHHHH
Confidence 356999999999998743
No 9
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=39.63 E-value=29 Score=28.99 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=31.4
Q ss_pred HHHHhhhcCCCCCch--------HHHHHHHHHHHHhhcccccccchhhh
Q psy8808 47 IATVLGHLNPHWDDE--------TLYQEARKILIAEYSHINYYEWLPIV 87 (152)
Q Consensus 47 ~a~~l~~~~p~w~de--------~lf~~aR~i~~a~~q~I~~~e~lP~l 87 (152)
+++.+...||+|+|+ .+++.|++.+.+.+-.|. -|+|.-
T Consensus 145 l~~iv~~~np~~~~e~~~d~~F~~al~~a~~~l~~~~~~~~--~w~~a~ 191 (306)
T COG4286 145 LPDIVESFNPDWSDEDADDEGFLEALAFASDFLDNLFKTIV--SWLRAY 191 (306)
T ss_pred hHHHHHhcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 788899999999973 388999999998876665 777743
No 10
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=34.67 E-value=18 Score=24.44 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhccc
Q psy8808 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHI 78 (152)
Q Consensus 44 HN~~a~~l~~~~p~w~de~lf~~aR~i~~a~~q~I 78 (152)
-+.||..++.+--||++. |.+|+.-+-+.+++|
T Consensus 37 YshiaKsMPpL~kHWN~~--~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 37 YSHIAKSMPPLAKHWNGT--YPEAKEEIKELIEEI 69 (82)
T ss_pred HHHHHHhCcHHHHhhccc--CchHHHHHHHHHHHH
Confidence 356888888888899976 667776666666655
No 11
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=22.12 E-value=56 Score=20.15 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy8808 63 LYQEARKILIAEYSHINYYE 82 (152)
Q Consensus 63 lf~~aR~i~~a~~q~I~~~e 82 (152)
-||.+|+++ -..|+|.++.
T Consensus 3 ~Fqv~RRv~-NklQ~ilFn~ 21 (51)
T PF11522_consen 3 SFQVCRRVI-NKLQHILFNT 21 (51)
T ss_dssp TTHHHHHHH-HHHT--SS-S
T ss_pred hhHHHHHHH-HHHHHHHhCC
Confidence 378899865 5678887653
No 12
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=21.78 E-value=65 Score=20.78 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhh
Q psy8808 61 ETLYQEARKILIAEY 75 (152)
Q Consensus 61 e~lf~~aR~i~~a~~ 75 (152)
.+||++||+.|-...
T Consensus 3 N~LFqqAr~aV~~a~ 17 (63)
T PF12758_consen 3 NRLFQQARDAVEQAV 17 (63)
T ss_pred chHHHHHHHHHHHHH
Confidence 479999999998444
Done!