RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8808
(152 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 99.2 bits (248), Expect = 2e-25
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
HNRIA L LNPHWDDE L+QEARKI+IA+ HI Y E+LPI++
Sbjct: 90 HNRIADELKKLNPHWDDERLFQEARKIVIAQMQHITYNEFLPILL 134
Score = 76.5 bits (189), Expect = 3e-17
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSKNDALPCY 148
VT ++D S VYGS +E A KLR F GG L + R+GR P + N + C + PC+
Sbjct: 7 VTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQRRNGRELLPFSNNPTDDCSLSSAGKPCF 66
Query: 149 QFG 151
G
Sbjct: 67 LAG 69
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 90.1 bits (224), Expect = 9e-22
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
HNRIA L LNPHW DE L+QEAR I+IA+Y I Y E+LP ++
Sbjct: 227 HNRIADELKALNPHWSDEKLFQEARLIVIAQYQKITYNEYLPALL 271
Score = 73.1 bits (180), Expect = 6e-16
Identities = 37/154 (24%), Positives = 51/154 (33%), Gaps = 59/154 (38%)
Query: 2 PDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDE 61
P DP +S F + C+ F RS G + P EQ+ Q+
Sbjct: 108 PPGDPYFSPFGR-CLPFFRSAPACGTGPSCN-LPREQINQL------------------- 146
Query: 62 TLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVE- 120
T ++D S VYGS +E A KLR F G+L V
Sbjct: 147 ----------------------------TSYLDLSQVYGSSEEEADKLRTFKDGKLKVNG 178
Query: 121 ---FRDGRPWPPAAANKSAVCDSKNDALPCYQFG 151
+G+ PA + C L C+ G
Sbjct: 179 EFPPPNGKGLLPAPPPGPSGC------LSCFLAG 206
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 77.3 bits (191), Expect = 2e-17
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
HNRIA+ L LNPHWD ET+Y E RKI+ A+ HI Y WLP ++
Sbjct: 132 HNRIASELLELNPHWDGETIYHETRKIVGAQMQHITYSHWLPKIL 176
Score = 46.1 bits (110), Expect = 1e-06
Identities = 39/164 (23%), Positives = 53/164 (32%), Gaps = 67/164 (40%)
Query: 2 PDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYT--------PAEQMIQVKHNRIATVLGH 53
P DDP R C+ FVRS+ C G T P EQ+ Q+
Sbjct: 1 PPDDPRRRGHR--CIEFVRSSA----VCGSGSTSLLFNSVTPREQINQL----------- 43
Query: 54 LNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFN 113
T ++DAS VYGS DE A +LR+
Sbjct: 44 ------------------------------------TSYIDASNVYGSSDEEALELRDLA 67
Query: 114 GG----RLAVEFRDGRPWPPAAANKSAVC--DSKNDALPCYQFG 151
R+ + G+P P + C D +PC+ G
Sbjct: 68 SDRGLLRVGIVSEAGKPLLPFERDSPMDCRRDPNESPIPCFLAG 111
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 72.1 bits (177), Expect = 1e-15
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
HNR+A L +P WDDE LYQEAR I+IA+Y I Y E+LP +
Sbjct: 92 HNRLADRLKKEHPEWDDERLYQEARLIVIAQYQLITYNEYLPAI 135
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPW----PPAAANKSAVCDSKNDA 144
T ++D S +YGS+ ++A LR F GG L G + P ++
Sbjct: 5 RTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFNNPNPSMGTIGLPP 64
Query: 145 LPCYQFG 151
C+ G
Sbjct: 65 TRCFIAG 71
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 66.7 bits (163), Expect = 9e-14
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 30 NPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVV 88
NPG ++ +HNR+A L LNPHWD ETLYQEARKI+ A I Y ++LP+++
Sbjct: 94 NPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQEARKIVGAMVQIITYRDYLPLIL 152
Score = 49.3 bits (118), Expect = 1e-07
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 86 IVVVTHWMDASLVYGSDDELAAKLREFN--GGRLAV--EFRD-GRPWPPAAANKSAVCDS 140
I +T ++DAS+VYGS+ LA LR G LAV F D G P + C
Sbjct: 15 INALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGLALLPFENLHNDPCAL 74
Query: 141 KNDA--LPCYQFG 151
+N + +PC+ G
Sbjct: 75 RNTSANIPCFLAG 87
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 65.5 bits (160), Expect = 3e-13
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLP 85
HNR+A L +NPHWD E +YQEARKI+ A + I + +++P
Sbjct: 245 HNRLARALKSINPHWDGEQIYQEARKIVGALHQIITFRDYIP 286
Score = 39.7 bits (93), Expect = 2e-04
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 50/156 (32%)
Query: 1 MPDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDD 60
+P +DP + C+ F RS+ C G T T+ G+L
Sbjct: 108 LPSEDPRILG--RACLPFFRSSA----VCGTGDTS-------------TLFGNL------ 142
Query: 61 ETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNG--GRLA 118
S N E I +T ++DAS VYGS LA LR+ + G L
Sbjct: 143 ---------------SLANPRE--QINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLR 185
Query: 119 VE--FRD-GRPWPPAAANKSAVCDSKN---DALPCY 148
V F D GR + P + + C+ + +PC+
Sbjct: 186 VNSKFDDSGRDYLPFQPEEVSSCNPDPNGGERVPCF 221
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 59.2 bits (144), Expect = 4e-11
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSD 102
HNR+A L NP DE +YQ AR I+IAE I Y E+LP ++ + + A Y
Sbjct: 137 HNRLADELARRNPSLSDEEIYQAARAIVIAEIQAITYNEFLPALLGENALPAYSGYDET 195
Score = 45.8 bits (109), Expect = 2e-06
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 85 PIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPP 129
I +T ++D S VYGSD+E A LR F GG+L + P
Sbjct: 50 QINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAGDLLP 94
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 57.3 bits (139), Expect = 2e-10
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPI 86
HN +A + +P W DE ++QEARK +IA Y +I +YEWLP
Sbjct: 225 HNYLAQRIAREHPDWSDEDIFQEARKWVIATYQNIVFYEWLPA 267
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRP 126
VT W+D S +YGS + LR F+GGRLA G P
Sbjct: 137 VTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFP 174
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 53.4 bits (129), Expect = 4e-09
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAE 74
HNR+ +L +P WDDE L+Q AR ILI E
Sbjct: 223 HNRVCDILKKEHPDWDDERLFQTARNILIGE 253
Score = 34.5 bits (80), Expect = 0.015
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 90 THWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPP 129
H +D S +YG + LR F G+L + +G +PP
Sbjct: 128 NHGIDLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPP 167
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 VVTHWMDASLVYGSDDELAAKLREFN-GGRLAVE 120
THW D S +YGS +E +LR F G+L ++
Sbjct: 89 TNTHWWDGSQIYGSTEEAQKRLRTFPPDGKLKLD 122
Score = 37.6 bits (88), Expect = 0.001
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLP 85
HN I L P W DE L+ +AR + A + I+ EW P
Sbjct: 159 HNAICDALRKEYPDWSDEQLFDKARLVNAALMAKIHTVEWTP 200
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 36.7 bits (85), Expect = 0.003
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 90 THWMDASLVYGSDDELAAKLREFNGGRLAV 119
T W D S++YGS+++ ++R F G+L +
Sbjct: 211 TPWWDGSVIYGSNEKGLRRVRTFKDGKLKI 240
Score = 32.0 bits (73), Expect = 0.11
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 38 QMIQVK-HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDAS 96
Q + VK HN + L P +DDE LY+ AR + A + I+ +W ++ T + A
Sbjct: 270 QALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAG 329
Query: 97 L 97
+
Sbjct: 330 M 330
>gnl|CDD|216168 pfam00876, Innexin, Innexin. This family includes the drosophila
proteins Ogre and shaking-B, and the C. elegans
proteins Unc-7 and Unc-9. Members of this family are
integral membrane proteins which are involved in the
formation of gap junctions. This family has been named
the Innexins.
Length = 341
Score = 29.1 bits (66), Expect = 0.89
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 44 HNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIV 87
N LG P D E + RK +I YY+W+P V
Sbjct: 56 QNTYFLPLGEEVPGTDPEEDRERERK-------YITYYQWVPFV 92
>gnl|CDD|176061 cd08679, C2_DOCK180_related, C2 domains found in Dedicator Of
CytoKinesis 1 (DOCK 180) and related proteins. Dock180
was first identified as an 180kd proto-oncogene product
c-Crk-interacting protein involved in actin
cytoskeletal changes. It is now known that it has
Rac-specific GEF activity, but lacks the conventional
Dbl homology (DH) domain. There are 10 additional
related proteins that can be divided into four classes
based on sequence similarity and domain organization:
Dock-A which includes Dock180/Dock1, Dock2, and Dock5;
Dock-B which includes Dock3/MOCA (modifier of cell
adhesion) and Dock4; Dock-C which includes Dock6/Zir1,
Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes
Dock9/Zizimin1, Dock10/Zizimin3, and
Dock11/Zizimin2/ACG (activated Cdc42-associated GEF).
Most of members of classes Dock-A and Dock-B are the
GEFs specific for Rac. Those of Dock-D are
Cdc42-specific GEFs while those of Dock-C are the GEFs
for both. All Dock180-related proteins have two common
homology domains: the C2 domain (AKA Dock homology
region (DHR)-1, CED-5, Dock180, MBC-zizimin homology
(CZH) 1) and the DHR-2 (AKA CZH2, or Docker). DHR-2 has
the catalytic activity for Rac and/or Cdc42, but is
structurally unrelated to the DH domain. The C2/DHR-1
domains of Dock180 and Dock4 have been shown to bind
phosphatidylinositol-3, 4, 5-triphosphate
(PtdIns(3,4,5)P3). The C2 domain was first identified
in PKC. C2 domains fold into an 8-standed beta-sandwich
that can adopt 2 structural arrangements: Type I and
Type II, distinguished by a circular permutation
involving their N- and C-terminal beta strands. Many C2
domains are Ca2+-dependent membrane-targeting modules
that bind a wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a
single C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin
which only have a single C2 domain. C2 domains with a
calcium binding region have negatively charged
residues, primarily aspartates, that serve as ligands
for calcium ions.
Length = 178
Score = 28.8 bits (65), Expect = 0.90
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 13 QVCMNFVRSTTDIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDE 61
++ + DI + C ++ + V H NP ++DE
Sbjct: 25 EITVEVRDDDGDIIEPCISAPGSGSELRSEYT---SVVYYHKNPVFNDE 70
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 28.1 bits (63), Expect = 1.6
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 41 QVKHNRIATVLGHLNPHWDDETLYQEARKI----LIAEYSHI-----NYYEWLPIVVVTH 91
+ K A L LNP + + + LIA++ + N+ I
Sbjct: 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACV 142
Query: 92 WMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCD 139
+ LV+G ++ G +R P P CD
Sbjct: 143 KLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCD 190
>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase,
extended (e) SDRs. This subgroup contains
UDP-N-acetylglucosamine 4-epimerase of Pseudomonas
aeruginosa, WbpP, an extended SDR, that catalyzes the
NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to
UDP-Glc and UDP-Gal. This subgroup has the
characteristic active site tetrad and NAD-binding motif
of the extended SDRs. Extended SDRs are distinct from
classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 304
Score = 27.6 bits (62), Expect = 2.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 104 ELAAKLREFNGGRLAVEFRDGRPW 127
ELA +RE G L + RP
Sbjct: 246 ELAELIREILGKELEPVYAPPRPG 269
>gnl|CDD|182143 PRK09917, PRK09917, hypothetical protein; Provisional.
Length = 157
Score = 26.7 bits (59), Expect = 3.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 70 ILIAEYSHINYYEWLPIVVVTHWMDASLVYGS 101
I + SH+ Y E L I ++T+++ AS + G+
Sbjct: 107 ISAVKISHLGYSEPLMITLLTNFLKASSIVGA 138
>gnl|CDD|133906 PHA00490, PHA00490, terminal protein.
Length = 266
Score = 27.2 bits (60), Expect = 3.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 37 EQMIQVKHNRIATVLGHLNPHWDDETLYQEARKI 70
E M Q++ N I +V G N +W+ + L ++ +KI
Sbjct: 177 ESMRQLQDNFIRSVEGSFNSYWEADELVEKLKKI 210
>gnl|CDD|114175 pfam05435, Phi-29_GP3, Phi-29 DNA terminal protein GP3. This
family consists of DNA terminal protein GP3 sequences
from Phi-29 like bacteriophages. DNA terminal protein
GP3 is linked to the 5' ends of both strands of the
genome through a phosphodiester bond between the
beta-hydroxyl group of a serine residue and the
5'-phosphate of the terminal deoxyadenylate. This
protein is essential for DNA replication and is involved
in the priming of DNA elongation.
Length = 266
Score = 26.8 bits (59), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 37 EQMIQVKHNRIATVLGHLNPHWDDETLYQEARKI 70
E M Q++ N I +V G N W+ + L ++ +KI
Sbjct: 177 ESMRQLQDNFIRSVEGSFNSDWEADELVEKLKKI 210
>gnl|CDD|215550 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-phosphate oxidase;
Provisional.
Length = 462
Score = 26.7 bits (59), Expect = 5.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 102 DDELAAKLREFNGGRLAVEFRDGRP 126
DD +AA LRE N LA DGRP
Sbjct: 279 DDAVAAGLREPNAMTLATAGEDGRP 303
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 26.6 bits (59), Expect = 6.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 58 WDDETLYQEARKILIAEYSHI 78
WD E L+Q AR +Y H+
Sbjct: 232 WDGERLFQAARFANEMQYQHL 252
>gnl|CDD|238735 cd01458, vWA_ku, Ku70/Ku80 N-terminal domain. The Ku78 heterodimer
(composed of Ku70 and Ku80) contributes to genomic
integrity through its ability to bind DNA double-strand
breaks (DSB) in a preferred orientation. DSB's are
repaired by either homologues recombination or
non-homologues end joining and facilitate repair by the
non-homologous end-joining pathway (NHEJ). The Ku
heterodimer is required for accurate process that tends
to preserve the sequence at the junction. Ku78 is found
in all three kingdoms of life. However, only the
eukaryotic proteins have a vWA domain fused to them at
their N-termini. The vWA domain is not involved in DNA
binding but may very likey mediate Ku78's interactions
with other proteins. Members of this subgroup lack the
conserved MIDAS motif.
Length = 218
Score = 26.2 bits (58), Expect = 6.9
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 41 QVKHNRIATVLGHLNPHWDDETLYQEARKI 70
+ H RI + +PH D +A
Sbjct: 125 KKSHKRIFLFTNNDDPHGGDSIKDSQAAVK 154
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 26.6 bits (59), Expect = 7.0
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 7/45 (15%)
Query: 95 ASLVYGSDD--ELAAK-----LREFNGGRLAVEFRDGRPWPPAAA 132
A V G + E A + L RL +R G
Sbjct: 423 AGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLL 467
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,986,533
Number of extensions: 721757
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 42
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)