RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8808
(152 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 78.6 bits (193), Expect = 2e-18
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 21 STTDIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINY 80
D P T ++ +HNR+AT L LNP WD E LYQEARKI+ A I Y
Sbjct: 226 LAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITY 285
Query: 81 YEWLPIVVVTHWMD 94
++LP+V+ M
Sbjct: 286 RDYLPLVLGPTAMR 299
Score = 45.1 bits (106), Expect = 8e-07
Identities = 26/154 (16%), Positives = 39/154 (25%), Gaps = 56/154 (36%)
Query: 2 PDDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDE 61
P +DP + C+ F RS T Q+ +
Sbjct: 123 PPNDPRIKN-QADCIPFFRSCPACPGSNI---TIRNQINALTS----------------- 161
Query: 62 TLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLREFNGGRL---- 117
++DAS+VYGS++ LA LR +
Sbjct: 162 ------------------------------FVDASMVYGSEEPLARNLRNMSNQLGLLAV 191
Query: 118 -AVEFRDGRPWPPAAANKSAVCDSKNDALPCYQF 150
+GR P C N + F
Sbjct: 192 NQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCF 225
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 76.9 bits (189), Expect = 6e-18
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 30 NPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVV 89
PG + +HNR+ +L +P W DE L+Q AR ILI E I E++ +
Sbjct: 222 LPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG 281
Query: 90 THWM---DASLVYGSD 102
D L++G+
Sbjct: 282 YFLQLKFDPELLFGAQ 297
Score = 61.5 bits (149), Expect = 2e-12
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSKNDALPCY 148
+ H +D +YG + E +LR F G+L + +G +PP+ + P
Sbjct: 151 LGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQS 210
Query: 149 QFG 151
Q
Sbjct: 211 QMA 213
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 74.2 bits (182), Expect = 6e-17
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 24 DIDQGCNPGYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKILIAEYSHINYYEW 83
G PG + +H R+ +L +P W DE L+Q ++ ILI E I ++
Sbjct: 217 QEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDY 276
Query: 84 LPIVVVTHWMD 94
+ + H+
Sbjct: 277 VQHLSGYHFKL 287
Score = 61.5 bits (149), Expect = 2e-12
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 89 VTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDGRPWPPAAANKSAVCDSKNDALPCY 148
+ H +D + +YG + KLR F G+L + G +PP +
Sbjct: 152 LGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENL 211
Query: 149 QF 150
QF
Sbjct: 212 QF 213
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 189
Score = 26.9 bits (59), Expect = 0.89
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 37 EQMIQVKHNRIATVLGHLNPHWDDETLYQEARKI 70
++MIQ++ N I +V G N + L +E +KI
Sbjct: 107 KKMIQLQLNFIKSVEGSFNSFDAADELIEELKKI 140
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 142
Score = 26.0 bits (56), Expect = 1.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 102 DDELAAKLREFNGGRLAVEFRDGRPWP 128
DD+L A + + G LA DGRP
Sbjct: 2 DDKLLAVISGNSIGVLATIKHDGRPQL 28
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.0 bits (57), Expect = 1.4
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 84 LPIVVVTHWMDASLVYGSDDELAAKLREFNGGRLAVEFRDG 124
+PI V+ W+D S YG L +L + V F D
Sbjct: 36 IPIFWVSKWVDYSDKYG----LGYQL---CDNSVGVLFNDS 69
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 25.7 bits (56), Expect = 1.5
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 41 QVKHNRIATVLGHLNPHWD---DETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASL 97
+++H R+ ++ ++ D D + E R+ L E S ++ I + +
Sbjct: 4 RMRHERVV-IIKNMFHPMDFEDDPLVLNEIREDLRVECS-----KFGQIRKLLLFDRHPD 57
Query: 98 VYG----SDDELAAKL------REFNGGRLAVEFRDGR 125
D E A R F G ++ + DG
Sbjct: 58 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 95
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
10090]}
Length = 85
Score = 25.2 bits (55), Expect = 1.9
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 3 DDDPVYSKFRQVCMNFVRSTTDIDQGCNPGYTPAEQMIQVKH 44
D +Y F ++ + + G + E +V +
Sbjct: 23 DHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVAN 64
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 160
Score = 25.9 bits (56), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 101 SDDELAAKLREFNGGRLAVEFRDGRPW 127
S+ E+A + G LA DG+P
Sbjct: 10 SEAEIADFVNSSRTGTLATIGPDGQPH 36
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 25.1 bits (55), Expect = 3.9
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 66 EARKILIAEYSHINYYEWLPIVVVTHWMD 94
+ R + AE + + + VTH
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 24.8 bits (54), Expect = 4.0
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 47 IATVLGHLNP-HWDDET---LYQEARKILIAEYSHINYYEWLPIVVVTHWMD 94
IA L DE L + ++ IN L I+++TH MD
Sbjct: 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 4.3
Identities = 9/75 (12%), Positives = 23/75 (30%)
Query: 52 GHLNPHWDDETLYQEARKILIAEYSHINYYEWLPIVVVTHWMDASLVYGSDDELAAKLRE 111
G+L +E++ + R + I+ + + + + L+
Sbjct: 21 GNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES 80
Query: 112 FNGGRLAVEFRDGRP 126
R+ V+ D
Sbjct: 81 LGNKRIRVDVADQAQ 95
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 23.5 bits (51), Expect = 5.3
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 6 PVYSKFRQVCMN----FVRSTT------DIDQGCNPGYTPAEQMI 40
P Y + C +RST D+ C+P +T ++ +
Sbjct: 7 PKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDV 51
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 24.5 bits (53), Expect = 6.0
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 57 HWDDETLYQ---EARKILIAEYSHINYYEWLPIVVVTHWMD 94
DE L + R + AE + + + VTH
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
>d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 269
Score = 24.5 bits (52), Expect = 6.4
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 32 GYTPAEQMIQVKHNRIATVLGHLNPHWDDETLYQEARKIL 71
G + ++ I VL + + + ++
Sbjct: 223 GESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLM 262
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 23.9 bits (50), Expect = 8.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 49 TVLGHLNPHWDDETLYQEARKIL 71
+L HL + L EA++I
Sbjct: 207 LLLTHLPHTGNPADLVTEAKQIF 229
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 23.9 bits (51), Expect = 9.1
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 46 RIATVLGHLNP---HWDDET---LYQEARKILIAEYSHINYYEWLPIVVVTHWMD 94
R+A + DE L R A + + ++VV+H
Sbjct: 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
{Prochlorococcus marinus [TaxId: 1219]}
Length = 222
Score = 24.0 bits (52), Expect = 9.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Query: 67 ARKILIA----EYSHINYYE-WL 84
ARKI EY+H+NY E WL
Sbjct: 127 ARKITEGVVKDEYTHLNYGEAWL 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,792
Number of extensions: 29141
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 28
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)