BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8809
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 160/260 (61%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP++ ++FHIR+ LLTVLG+LD ++ AY +T+ +G +V +VFGFEYAILLTV
Sbjct: 125 MERSPVLGWLFHIRVGSLLTVLGILDYVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIA 184
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+ IKY LH ++ + WE+KAVF LY ELV+ +KV++YI+FV+IM ++Y LP+F FR
Sbjct: 185 STAIKYVLHAAEMRTDTPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFR 244
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
PM++ R+FRKAL DV IM R
Sbjct: 245 PMFFTIRNFRKALNDV----------------------------IMSR------------ 264
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
R+ R ++N +PDAT +EL ++DN+CIICRE+M + SKKLPC
Sbjct: 265 ----RAIR--------------NMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCG 306
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFHT+CLRSWFQR QTCPT
Sbjct: 307 HIFHTTCLRSWFQRQQTCPT 326
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 231 bits (589), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 162/260 (62%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP IS++FH RI+ L+ +LG+LD +FV AY + VT+GASV +VFGFEYAIL+T+ +
Sbjct: 121 MERSPNISWLFHFRILALMLLLGVLDAFFVSHAYNSLVTRGASVQLVFGFEYAILMTMIL 180
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+ IKY LH++DL E W++KAV+ LY EL F+KV++Y+ F+ IM++V+T PLFA R
Sbjct: 181 AVFIKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMVKVHTFPLFAIR 240
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
PMY A R F+KA+ D +M+
Sbjct: 241 PMYLAMRQFKKAVTDA----VMS------------------------------------- 259
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
R+A+++ +N +PDAT++EL DNVCIICREEM S +K+LPCN
Sbjct: 260 -------RRAIRN----------MNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCN 302
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFHTSCLRSWFQR QTCPT
Sbjct: 303 HIFHTSCLRSWFQRQQTCPT 322
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 231 bits (588), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 161/260 (61%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP IS++FH RI+ L+ +LG+LD +FV AY + V +GASV +VFGFEYAIL+TV +
Sbjct: 121 MERSPNISWLFHFRILALMLLLGVLDAFFVSHAYHSLVIRGASVQLVFGFEYAILMTVIL 180
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+ IKY LH++DL E W++KAV+ LY EL F+KV++Y+ F+ IM++V+T PLFA R
Sbjct: 181 TVFIKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYVAFMTIMVKVHTFPLFAIR 240
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
PMY A R F+KA+ D IM+
Sbjct: 241 PMYLAMRQFKKAVTDA----IMS------------------------------------- 259
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
R+A+++ +N +PDAT++EL DNVCIICREEM + +K+LPCN
Sbjct: 260 -------RRAIRN----------MNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCN 302
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFHTSCLRSWFQR QTCPT
Sbjct: 303 HIFHTSCLRSWFQRQQTCPT 322
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 148/260 (56%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP IS++FH R++ L+ +LG++D FV A C
Sbjct: 127 MERSPNISWVFHFRVLSLMVLLGVMDFLFVNHA-------------------------CH 161
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+I+ + A ++ L VF ++M+ V + +I + L +T+ L +
Sbjct: 162 SIITRGA--SVQL----------VFGFEYAILMTMV-LTTFIKYTL-----HTIDLQSEN 203
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
P NK + M + LF GF+KV++Y+ F+ IM++V+T PLFA RPM
Sbjct: 204 PWD-------------NKAVYM--LYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPM 248
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
Y A R F+KA+ D I SRRAI ++N +PDAT ++L DNVCIICREEM + +KKLPCN
Sbjct: 249 YLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCN 308
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFH+SCLRSWFQR QTCPT
Sbjct: 309 HIFHSSCLRSWFQRQQTCPT 328
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 147/260 (56%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP IS++FH RI+ L F++G + F
Sbjct: 127 MERSPNISWLFHCRIV---------SLMFLLG--------------ILDF---------- 153
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+ + +A H+I L R + VF ++M+ V I +I +VL +++ L +
Sbjct: 154 -LFVSHAYHSI-LTRGA--SVQLVFGFEYAILMTMVLTI-FIKYVL-----HSVDLQSEN 203
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
P NK + M Y+ LF GF+KV++Y+ F+ IM++V+T PLFA RPM
Sbjct: 204 PWD-------------NKAVYM-LYTE-LFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPM 248
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
Y A R F+KA+ D I SRRAI ++N +PDAT +EL DNVCIICREEM + +K+LPCN
Sbjct: 249 YLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCN 308
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFHTSCLRSWFQR QTCPT
Sbjct: 309 HIFHTSCLRSWFQRQQTCPT 328
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 147/260 (56%), Gaps = 58/260 (22%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP IS++FH RI+ L F++G + F
Sbjct: 127 MERSPNISWLFHCRIV---------SLMFLLG--------------ILDF---------- 153
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
+ + +A H+I L R + VF ++M+ V I +I +VL +++ L +
Sbjct: 154 -LFVSHAYHSI-LTRGA--SVQLVFGFEYAILMTMVLTI-FIKYVL-----HSVDLQSEN 203
Query: 121 PMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPM 180
P NK + M Y+ LF GF+KV++Y+ F+ IM++V+T PLFA RPM
Sbjct: 204 PWD-------------NKAVYM-LYTE-LFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPM 248
Query: 181 YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCN 240
Y A R F+KA+ D I SRRAI ++N +PDAT +EL DNVCIICREEM + +K+LPCN
Sbjct: 249 YLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCN 308
Query: 241 HIFHTSCLRSWFQRHQTCPT 260
HIFHTSCLRSWFQR QTCPT
Sbjct: 309 HIFHTSCLRSWFQRQQTCPT 328
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 96/136 (70%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP+I+ FH+R++ +L LG D YFV AY +T+TKGAS IVFGFEYAILL + +
Sbjct: 128 MERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFSTITKGASSQIVFGFEYAILLALVL 187
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
++ IKY LH DL W++KAV+ LY EL+++ ++ ++Y F +IM+RV+T PLF+ R
Sbjct: 188 HVTIKYLLHMHDLRNPQSWDNKAVYLLYAELLINLIRCVLYGFFAVIMLRVHTFPLFSVR 247
Query: 121 PMYYAARSFRKALKDV 136
P Y + R+ KA DV
Sbjct: 248 PFYQSVRALHKAFLDV 263
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 149 LFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSF 208
L I ++ ++Y F +IM+RV+T PLF+ RP Y + R+ KA DVI SRRAI+ +N+ F
Sbjct: 218 LLINLIRCVLYGFFAVIMLRVHTFPLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQF 277
Query: 209 PDATSDELTEADNVCIICREEM--QSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
P ++DEL+ D CIICREEM +S+ K+LPC+H+FH CLRSWFQR QTCPT
Sbjct: 278 PVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPT 331
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 95/136 (69%)
Query: 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCV 60
MERSP+I+ FH+R++ +L LG D YFV AY TT+T+GAS IVFGFEYAILL + +
Sbjct: 128 MERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFTTITRGASAQIVFGFEYAILLALVL 187
Query: 61 NILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFR 120
++ IKY LH DL W++KAV+ LY EL ++ ++ ++Y F ++M+RV+T PLF+ R
Sbjct: 188 HVTIKYLLHMHDLRNPQSWDNKAVYLLYAELFINLIRCLLYGFFAVVMLRVHTFPLFSVR 247
Query: 121 PMYYAARSFRKALKDV 136
P Y + R+ KA DV
Sbjct: 248 PFYQSVRALHKAFLDV 263
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 2/114 (1%)
Query: 149 LFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSF 208
LFI ++ ++Y F ++M+RV+T PLF+ RP Y + R+ KA DVI SRRAI+ +N+ F
Sbjct: 218 LFINLIRCLLYGFFAVVMLRVHTFPLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQF 277
Query: 209 PDATSDELTEADNVCIICREEM--QSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
P ++++L D CIICREEM ++ K+LPC+H+FH CLRSWFQR QTCPT
Sbjct: 278 PVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPT 331
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 4 SPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNIL 63
SP H R++ LL + L V T T G + E ++ +++
Sbjct: 175 SPTTPMSSHGRVLSLLIAMLLSCCGLAVVCCVTGYTHGMHTLAFMAAESLLVTVRTAHVI 234
Query: 64 IKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRPMY 123
++Y +H DLN E WE K + Y + VM + + ++ + M
Sbjct: 235 LRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELALLSLDLMHHIHM--------------- 279
Query: 124 YAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYA 183
L G + + M + + + +R Y
Sbjct: 280 -------------------------LLFGNIWLSMASLVIFMQLR-------------YL 301
Query: 184 ARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIF 243
++ ++ N R + ++ F AT +EL ++ C IC + MQ+A +KLPC H+F
Sbjct: 302 FHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAA-RKLPCGHLF 360
Query: 244 HTSCLRSWFQRHQTCPT 260
H SCLRSW ++ +CPT
Sbjct: 361 HNSCLRSWLEQDTSCPT 377
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 106/259 (40%), Gaps = 61/259 (23%)
Query: 4 SPMISY--IFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVN 61
+PM S+ + + + +LL+ GL + + G T G + E ++ +
Sbjct: 178 TPMSSHGRVLSLLVAMLLSCCGLAAVCSITG-----YTHGMHTLAFMAAESLLVTVRTAH 232
Query: 62 ILIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRP 121
++++Y +H DLN E WE K + Y + VM + + ++ + M
Sbjct: 233 VILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHM------------- 279
Query: 122 MYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMY 181
L G + + M + + + +R
Sbjct: 280 ---------------------------LLFGNIWLSMASLVIFMQLR------------- 299
Query: 182 YAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNH 241
Y ++ ++ N R + ++ F AT +EL ++ C IC + MQ+A +KLPC H
Sbjct: 300 YLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAA-RKLPCGH 358
Query: 242 IFHTSCLRSWFQRHQTCPT 260
+FH SCLRSW ++ +CPT
Sbjct: 359 LFHNSCLRSWLEQDTSCPT 377
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Query: 154 VKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATS 213
++++ Y + + ++P+++ R MY S + +++ R+A +N +P AT
Sbjct: 223 LRLLAYSLLFMYQFPYVSVPIYSIRQMYTCFYSLFRRIREHARFRQATRDMNAMYPTATE 282
Query: 214 DELTEADNVCIICREEM--------------------QSASKKLPCNHIFHTSCLRSWFQ 253
++LT +D C ICREEM K+LPC HI H CLR+W +
Sbjct: 283 EQLTNSDRTCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLE 342
Query: 254 RHQTCP 259
R QTCP
Sbjct: 343 RQQTCP 348
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 11 FHI--RIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILL---TVCVNILIK 65
FHI R+ VL +LD + + + S ++F E+++LL T+ + L
Sbjct: 135 FHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCI 194
Query: 66 YALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYA 125
Y L++ W+ K+ + +E+ ++++ Y + + ++P+++ R MY
Sbjct: 195 YLYEARHLDQ--VWDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVSVPIYSIRQMYTC 252
Query: 126 -----------ARSFRKALKDVNKL 139
AR FR+A +D+N +
Sbjct: 253 FYSLFRRIREHAR-FRQATRDMNAM 276
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 189 KALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCL 248
K +K I R A+ L+ + PDATS+EL D+ C ICRE M A K+L CNH+FH CL
Sbjct: 303 KRIKGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKA-KRLHCNHLFHLGCL 361
Query: 249 RSWFQRH----QTCPT 260
RSW + +CPT
Sbjct: 362 RSWLDQGLNEVYSCPT 377
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 188 RKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSC 247
+ K +N R A+ +N S P+ L E D+VC IC E ++++ PCNH FH C
Sbjct: 513 KNGWKTFMNRRTAVKKIN-SLPEIKGSHLQEIDDVCAICYHEFTTSARITPCNHYFHALC 571
Query: 248 LRSWFQRHQTCP 259
LR W TCP
Sbjct: 572 LRKWLYIQDTCP 583
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 167 MRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIIC 226
+R + + L A+ +Y A++ K +N R A+ +N S P+ L E ++VC IC
Sbjct: 495 IRAFMMCLHAYFNIYLQAKN---GWKTFMNRRTAVKKIN-SLPEIKGSRLQEINDVCAIC 550
Query: 227 REEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
E ++++ PCNH FH CLR W TCP
Sbjct: 551 YHEFTTSARITPCNHYFHALCLRKWLYIQDTCP 583
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 167 MRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIIC 226
+R + + L A+ +Y A++ K +N R A+ +N S P+ L E ++VC IC
Sbjct: 495 IRAFMMCLHAYFNIYLQAKN---GWKTFMNRRTAVKKIN-SLPEIKGSRLQEINDVCAIC 550
Query: 227 REEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
E ++++ PCNH FH CLR W TCP
Sbjct: 551 YHEFTTSARITPCNHYFHALCLRKWLYIQDTCP 583
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 149 LFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSF 208
+F F+K ++ L M+ + +P+ + + + + ++ + R L+++
Sbjct: 276 VFTRFLKTALH----LSMLIPFRMPMMLLKDVVWDILALYQSGTSLWKIWRNNKQLDDTL 331
Query: 209 PDATSDELTEA---DNVCIICREEM------------QSASKKLPCNHIFHTSCLRSWFQ 253
T ++L + DN+CIIC +E+ K+LPC HI H SCL++W +
Sbjct: 332 VTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWME 391
Query: 254 RHQTCP 259
R QTCP
Sbjct: 392 RSQTCP 397
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 198 RRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT 257
R A+H + S P A++ +L + +++C IC ++M+SA PC+H FH +CL+ W +T
Sbjct: 513 RDAVHKIQ-SMPTASTLQLQQHNDICSICFQDMKSAVIT-PCSHFFHAACLKKWLYVQET 570
Query: 258 CP 259
CP
Sbjct: 571 CP 572
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 87 LYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRP------MYYAARSFRKALKDVNKLL 140
LY+ L +SF ++I+ ++ V+++ + + R +Y + A +V L
Sbjct: 180 LYLMLALSFAQLILDVLHVVLLTSLNLFEMVRSRRTRSANLVYEGGTTDDDADDEVFILE 239
Query: 141 IMNAYSS--PLFIGFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSR 198
Y + L I +KVI+ I+ + + T+ F A SF N++
Sbjct: 240 GKYIYETVFDLTITVLKVILDIIQEVFVPWSITVVYSIFVRSIKAGESFLLVYNYWKNNK 299
Query: 199 RAIHHLNNSFPDATSDELTEADNVCIICREEM---------QSASKKLPCNHIFHTSCLR 249
+ L D + ++L + D++CIIC ++M +K LPC H+ H CL+
Sbjct: 300 K----LYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLK 355
Query: 250 SWFQRHQTCP 259
SW +R QTCP
Sbjct: 356 SWMERSQTCP 365
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 212 TSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH----QTCPT 260
TS+EL + D+ C ICRE M A K+L CNH+FH CLRSW + +CPT
Sbjct: 326 TSEELRDYDDECAICREPMAKA-KRLHCNHLFHLGCLRSWLDQGLNEVYSCPT 377
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 190 ALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLR 249
K + R A++ + S P AT ++L + +++C IC ++M+SA PC+H FH CL+
Sbjct: 505 GWKSFLLRRDAVNKIK-SLPIATKEQLEKHNDICAICYQDMKSAVIT-PCSHFFHAGCLK 562
Query: 250 SWFQRHQTCP 259
W +TCP
Sbjct: 563 KWLYVQETCP 572
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 190 ALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLR 249
K + R A++ + S P AT ++L + +++C IC ++M+SA PC+H FH CL+
Sbjct: 505 GWKSFLLRRDAVNKIK-SLPVATQEQLEKHNDICAICYQDMKSAVIT-PCSHFFHAGCLK 562
Query: 250 SWFQRHQTCP 259
W TCP
Sbjct: 563 KWLYVQDTCP 572
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 192 KDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSW 251
K + R A++ + S P AT ++L + +++C IC ++M SA PC+H FH CL+ W
Sbjct: 507 KSFLLRRDAVNKIK-SLPVATKEQLEQHNDICSICYQDMNSAVIT-PCSHFFHPGCLKKW 564
Query: 252 FQRHQTCP 259
+TCP
Sbjct: 565 LYVQETCP 572
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 192 KDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSW 251
K + R A++ + S P +T ++L + +++C IC ++M SA PC+H FH CL+ W
Sbjct: 507 KSFLLRRDAVNKIK-SLPVSTKEQLEQHNDICSICYQDMNSAVIT-PCSHFFHPGCLKKW 564
Query: 252 FQRHQTCP 259
+TCP
Sbjct: 565 LYVQETCP 572
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 189 KALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCL 248
+A V RR+ H ++ P+AT +L D+VC IC +EM SA K C H FH CL
Sbjct: 587 RAGWSVFMKRRSAVHKISALPEATPAQLQAFDDVCAICYQEMYSA-KITRCRHFFHGVCL 645
Query: 249 RSWFQRHQTCP 259
R W CP
Sbjct: 646 RKWLYVQDRCP 656
>sp|P90859|HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
elegans GN=hrdl-1 PE=1 SV=2
Length = 564
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 196 NSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH 255
N ++ H+ S+P S + D+ C++C E + S++LPC+H FH CL W +
Sbjct: 311 NHKKIFEHIERSYP---SVKCANGDDRCVVCWE-LLGTSRRLPCSHQFHDWCLMWWLAQD 366
Query: 256 QTCPT 260
+CPT
Sbjct: 367 SSCPT 371
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 188 RKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSC 247
R+ L ++ H+ +++P S + +D+ CI+C E + S++LPC+H FH C
Sbjct: 318 REQLGRHRTHKKIFEHIESAYP---SVKAANSDDRCIVCWE-LLGTSRRLPCSHQFHDWC 373
Query: 248 LRSWFQRHQTCPT 260
L W + +CPT
Sbjct: 374 LMWWLAQDSSCPT 386
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 212 TSDELTEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
T D L N C +C +E + S K++PC H+FH CL W + H +CP
Sbjct: 205 TKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCP 254
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ + + ++LPCNH+FH SC+ W ++H +CP
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCP 269
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ + + ++LPCNH+FH C+ W ++H TCP
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCP 266
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 176 AFRPM--YYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICRE--EMQ 231
A+RP ++ R R+ DV R+AI L EL ++ C++C + + Q
Sbjct: 210 AWRPRGPNFSTRRQRQLKADV---RKAIGKLQLRVLQEGDKELEPDEDNCVVCFDIYKPQ 266
Query: 232 SASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+ L C HIFH +C+ W H+TCP
Sbjct: 267 DVVRILTCKHIFHKACIDPWLLAHRTCP 294
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ + + ++LPCNH+FH C+ W ++H TCP
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCP 265
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 219 ADNVCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQTCP 259
A+ C IC+E + K +LPC H FH CL+ W H +CP
Sbjct: 226 AEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCP 268
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ + ++LPCNH+FH C+ W ++H TCP
Sbjct: 228 CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCP 266
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ ++ ++LPCNH FH+SC+ W + H TCP
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCP 266
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+E+ ++ ++LPCNH FH+SC+ W + H TCP
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCP 267
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 210 DATSDELTEADNVCIICREEMQSAS-KKLPCNHIFHTSCLRSWFQRHQTCPT 260
D D E + C+IC E + + LPC H FH+ C+R W + TCPT
Sbjct: 1131 DKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQCIRPWLMQQGTCPT 1182
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 186 SFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHT 245
RKALK + S+ N AT + TEA VC IC+ E + L C H+F
Sbjct: 355 GLRKALKLLCTSQ-------NYGVRATGQQCTEAGAVCAICQAEFRDPMILL-CQHVFCE 406
Query: 246 SCLRSWFQRHQTCP 259
CL W R +TCP
Sbjct: 407 ECLCLWLDRERTCP 420
>sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2 OS=Homo
sapiens GN=RNFT2 PE=2 SV=2
Length = 444
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 188 RKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSC 247
RKALK + S+ N AT + TEA ++C IC+ E + L C H+F C
Sbjct: 356 RKALKLLCTSQ-------NYGVRATGQQCTEAGDICAICQAEFREPLILL-CQHVFCEEC 407
Query: 248 LRSWFQRHQTCP 259
L W R +TCP
Sbjct: 408 LCLWLDRERTCP 419
>sp|Q5RAG4|RNFT2_PONAB RING finger and transmembrane domain-containing protein 2 OS=Pongo
abelii GN=RNFT2 PE=2 SV=1
Length = 444
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 188 RKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSC 247
RKALK + S+ N AT + TEA ++C IC+ E + L C H+F C
Sbjct: 356 RKALKLLCTSQ-------NYGVRATGQQCTEAGDICAICQAEFREPLILL-CQHVFCEEC 407
Query: 248 LRSWFQRHQTCP 259
L W R +TCP
Sbjct: 408 LCLWLDRERTCP 419
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 172 LPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQ 231
LPL+ F+ +F K++ + + N AT L D C IC +
Sbjct: 263 LPLYKFK-------AFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDADCCICLSSYE 315
Query: 232 SASK--KLPCNHIFHTSCLRSWFQRHQTCP 259
++ LPCNH FH++C+ W + TCP
Sbjct: 316 DGAELHALPCNHHFHSTCIVKWLKMRATCP 345
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 211 ATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
AT + +EAD +C IC+ E + L C H+F C+ SWF + +TCP
Sbjct: 344 ATKRQCSEADGMCAICQAEF-TKPIALICQHVFCEECISSWFNKEKTCP 391
>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
Length = 1208
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 223 CIICREEMQSAS-KKLPCNHIFHTSCLRSWFQRHQTCPT 260
C+IC E + + LPC H FH C+R W + TCPT
Sbjct: 1148 CVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPT 1186
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 198 RRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKK----LPCNHIFHTSCLRSWFQ 253
+RA+ +SF ++D+L D C IC ++M +K +PC HIF +CL+ W +
Sbjct: 84 KRAVKEAWDSFEPLSNDQL--MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLE 141
Query: 254 RHQTCP 259
H TCP
Sbjct: 142 NHCTCP 147
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+++ + ++LPCNH+FH C+ W ++H +CP
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCP 267
>sp|Q6P4U6|ZNRF1_DANRE E3 ubiquitin-protein ligase znrf1 OS=Danio rerio GN=znrf1 PE=2 SV=1
Length = 215
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 212 TSDELTEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
D L+ C+IC EE+Q +LPC I+H SC+ SWF+ +++CP
Sbjct: 161 NDDVLSRDAGECVICLEELQQGDTIARLPCLCIYHKSCIDSWFEINRSCP 210
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 223 CIICREE--MQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C +C+++ + ++LPCNH+FH C+ W ++H +CP
Sbjct: 232 CPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCP 270
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 160 IVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATS------ 213
+VFV I V + A+ YY R FR A N RR L ++ A S
Sbjct: 208 VVFVSISFIVLMIISLAWLVFYYIQR-FRYANARDRNQRR----LGDAAKKAISKLQVRT 262
Query: 214 ----DELTEAD-NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
D+ TE+D + C +C E + + LPC H+FH SC+ W H+TCP
Sbjct: 263 IRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCP 315
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 213 SDELTEAD-NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
D+ T+ D + C +C E + + LPC H+FH SC+ W H TCP
Sbjct: 253 GDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCP 302
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 213 SDELTEAD-NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
D+ T+ D + C +C E + + LPC H+FH SC+ W H TCP
Sbjct: 253 GDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCP 302
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 213 SDELTEAD-NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
D+ TE+D + C +C E + + LPC H+FH SC+ W H+TCP
Sbjct: 267 GDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCP 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.143 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,121,030
Number of Sequences: 539616
Number of extensions: 3031454
Number of successful extensions: 13805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 13390
Number of HSP's gapped (non-prelim): 514
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (27.7 bits)