Query psy8809
Match_columns 261
No_of_seqs 234 out of 1753
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:48:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 1.2E-27 2.5E-32 214.7 14.4 194 7-260 132-339 (491)
2 KOG0802|consensus 99.9 1.3E-22 2.9E-27 197.3 12.4 202 1-260 125-335 (543)
3 KOG4628|consensus 99.6 2E-15 4.4E-20 137.3 8.4 40 221-260 230-272 (348)
4 PF13639 zf-RING_2: Ring finge 99.5 2.8E-14 6.1E-19 92.9 2.5 40 221-260 1-42 (44)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.9E-12 6.2E-17 92.6 3.1 42 219-260 18-71 (73)
6 PHA02929 N1R/p28-like protein; 99.1 2.9E-11 6.3E-16 105.7 4.0 42 219-260 173-221 (238)
7 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.7E-10 3.7E-15 73.1 2.2 38 223-260 1-38 (39)
8 COG5540 RING-finger-containing 98.9 3.3E-10 7.2E-15 100.4 2.6 42 219-260 322-366 (374)
9 cd00162 RING RING-finger (Real 98.8 2.5E-09 5.4E-14 68.4 3.0 39 222-260 1-40 (45)
10 KOG1734|consensus 98.8 3.6E-07 7.8E-12 80.1 16.8 43 218-260 222-275 (328)
11 PF00097 zf-C3HC4: Zinc finger 98.8 2.2E-09 4.8E-14 68.4 2.1 38 223-260 1-40 (41)
12 KOG0317|consensus 98.8 2.7E-09 5.8E-14 94.3 2.5 44 216-260 235-278 (293)
13 smart00184 RING Ring finger. E 98.8 5.4E-09 1.2E-13 64.5 3.1 37 223-260 1-38 (39)
14 PF15227 zf-C3HC4_4: zinc fing 98.7 9.3E-09 2E-13 66.2 2.7 37 223-260 1-41 (42)
15 PF13445 zf-RING_UBOX: RING-ty 98.7 1.2E-08 2.5E-13 66.0 2.1 36 223-259 1-43 (43)
16 PF12861 zf-Apc11: Anaphase-pr 98.6 4.2E-08 9E-13 72.2 3.0 42 219-260 20-76 (85)
17 PF13920 zf-C3HC4_3: Zinc fing 98.5 4.1E-08 9E-13 65.4 2.3 40 220-260 2-42 (50)
18 smart00504 Ubox Modified RING 98.5 7.2E-08 1.6E-12 66.9 3.6 39 221-260 2-40 (63)
19 KOG0823|consensus 98.4 1.5E-07 3.2E-12 81.1 2.7 41 219-260 46-89 (230)
20 PF14634 zf-RING_5: zinc-RING 98.3 4E-07 8.6E-12 59.1 2.6 39 222-260 1-41 (44)
21 PHA02926 zinc finger-like prot 98.3 4.3E-07 9.2E-12 77.9 2.7 42 219-260 169-224 (242)
22 COG5194 APC11 Component of SCF 98.3 5.6E-07 1.2E-11 64.8 2.8 41 221-261 21-76 (88)
23 KOG0320|consensus 98.2 6.2E-07 1.4E-11 74.3 3.0 42 219-260 130-172 (187)
24 TIGR00599 rad18 DNA repair pro 98.2 8.1E-07 1.8E-11 83.2 2.6 42 218-260 24-65 (397)
25 KOG2930|consensus 98.1 1.7E-06 3.6E-11 65.4 1.9 41 221-261 47-103 (114)
26 KOG0828|consensus 98.1 3.3E-05 7.2E-10 73.0 10.7 43 218-260 569-628 (636)
27 smart00744 RINGv The RING-vari 98.0 3.4E-06 7.5E-11 56.0 2.7 39 222-260 1-47 (49)
28 KOG1493|consensus 98.0 1.4E-06 3E-11 62.2 0.8 43 218-260 18-75 (84)
29 COG5574 PEX10 RING-finger-cont 98.0 4E-06 8.7E-11 73.5 2.2 42 218-260 213-256 (271)
30 PF04564 U-box: U-box domain; 97.9 7.3E-06 1.6E-10 59.0 2.6 40 220-260 4-44 (73)
31 COG5219 Uncharacterized conser 97.6 1.2E-05 2.7E-10 80.8 0.5 43 218-260 1467-1517(1525)
32 KOG0287|consensus 97.5 3.5E-05 7.5E-10 69.9 1.6 39 221-260 24-62 (442)
33 KOG2164|consensus 97.4 8.7E-05 1.9E-09 70.6 2.6 40 220-260 186-230 (513)
34 PF13705 TRC8_N: TRC8 N-termin 97.4 7E-05 1.5E-09 71.8 1.6 96 3-100 372-467 (508)
35 PF11789 zf-Nse: Zinc-finger o 97.3 9.9E-05 2.1E-09 50.6 1.6 42 219-260 10-53 (57)
36 KOG0804|consensus 97.2 0.00013 2.9E-09 68.3 1.8 38 221-260 176-216 (493)
37 COG5432 RAD18 RING-finger-cont 97.1 0.0003 6.4E-09 62.7 2.2 40 220-260 25-64 (391)
38 PF11793 FANCL_C: FANCL C-term 97.0 0.00021 4.6E-09 51.0 0.8 35 220-254 2-43 (70)
39 PF10367 Vps39_2: Vacuolar sor 96.9 0.0017 3.6E-08 49.5 5.0 31 219-249 77-108 (109)
40 KOG0825|consensus 96.8 0.00029 6.4E-09 70.0 -0.1 39 222-260 125-165 (1134)
41 KOG1039|consensus 96.7 0.0007 1.5E-08 62.5 1.6 43 218-260 159-215 (344)
42 KOG1814|consensus 96.7 0.0011 2.4E-08 61.7 2.5 43 212-254 176-220 (445)
43 PF05883 Baculo_RING: Baculovi 96.6 0.00083 1.8E-08 53.6 1.2 33 220-252 26-66 (134)
44 KOG2879|consensus 96.5 0.0084 1.8E-07 53.2 7.0 44 217-260 236-281 (298)
45 KOG1941|consensus 96.5 0.00076 1.6E-08 62.4 0.5 42 218-259 363-409 (518)
46 KOG4265|consensus 96.4 0.0031 6.7E-08 57.9 3.4 42 218-260 288-330 (349)
47 PF14835 zf-RING_6: zf-RING of 96.3 0.0011 2.3E-08 46.3 0.2 39 220-260 7-45 (65)
48 KOG0297|consensus 96.3 0.0016 3.5E-08 61.5 1.3 43 218-260 19-61 (391)
49 KOG2114|consensus 96.0 0.0077 1.7E-07 60.7 4.2 37 221-260 841-877 (933)
50 KOG0801|consensus 95.9 0.0026 5.6E-08 52.2 0.4 30 217-246 174-205 (205)
51 KOG0978|consensus 95.8 0.0023 5E-08 63.8 -0.0 39 221-260 644-683 (698)
52 KOG4159|consensus 95.7 0.0079 1.7E-07 56.7 2.9 42 218-260 82-123 (398)
53 KOG0311|consensus 95.6 0.002 4.3E-08 59.0 -1.3 41 219-260 42-84 (381)
54 KOG2034|consensus 95.2 0.029 6.2E-07 57.1 5.3 34 218-251 815-849 (911)
55 PF12906 RINGv: RING-variant d 95.0 0.016 3.5E-07 38.0 1.9 38 223-260 1-46 (47)
56 KOG0826|consensus 94.9 0.47 1E-05 43.4 11.6 43 218-260 298-340 (357)
57 COG5152 Uncharacterized conser 94.8 0.013 2.8E-07 49.7 1.3 40 219-259 195-234 (259)
58 KOG1785|consensus 94.8 0.011 2.4E-07 55.1 0.8 39 221-260 370-410 (563)
59 KOG1428|consensus 94.4 0.025 5.5E-07 60.1 2.6 38 218-255 3484-3523(3738)
60 KOG0309|consensus 94.3 0.025 5.5E-07 56.5 2.2 26 236-261 1045-1070(1081)
61 KOG1952|consensus 94.2 0.02 4.2E-07 57.9 1.2 38 217-254 188-228 (950)
62 KOG0802|consensus 94.2 0.021 4.6E-07 56.1 1.5 50 206-260 465-514 (543)
63 KOG1813|consensus 94.0 0.02 4.4E-07 51.3 0.8 42 218-260 239-280 (313)
64 KOG4692|consensus 93.7 0.042 9.1E-07 50.6 2.3 40 218-258 420-459 (489)
65 COG5222 Uncharacterized conser 93.2 0.11 2.3E-06 47.0 3.9 40 220-260 274-315 (427)
66 PHA03096 p28-like protein; Pro 92.5 0.057 1.2E-06 48.8 1.3 34 221-254 179-219 (284)
67 KOG4445|consensus 92.2 0.066 1.4E-06 48.3 1.2 33 220-252 115-149 (368)
68 KOG1002|consensus 92.1 0.092 2E-06 50.8 2.2 42 218-260 534-580 (791)
69 PF08746 zf-RING-like: RING-li 91.4 0.14 3.1E-06 32.8 1.9 38 223-260 1-42 (43)
70 KOG4172|consensus 91.4 0.068 1.5E-06 36.1 0.3 42 218-260 5-48 (62)
71 KOG3970|consensus 90.7 0.14 3.1E-06 44.3 1.8 35 220-254 50-85 (299)
72 KOG1571|consensus 90.6 0.5 1.1E-05 43.7 5.3 39 219-261 304-342 (355)
73 KOG3039|consensus 89.9 0.26 5.5E-06 43.4 2.6 41 220-260 221-264 (303)
74 KOG0827|consensus 89.5 0.038 8.2E-07 51.4 -2.9 41 219-259 195-238 (465)
75 KOG2932|consensus 89.4 0.18 3.8E-06 45.8 1.3 41 218-260 88-128 (389)
76 KOG1940|consensus 89.2 0.23 4.9E-06 44.7 1.9 41 220-260 158-201 (276)
77 KOG0298|consensus 89.1 0.13 2.8E-06 54.4 0.3 41 220-260 1153-1193(1394)
78 KOG0269|consensus 86.9 0.45 9.8E-06 47.9 2.5 40 221-260 780-820 (839)
79 PF10571 UPF0547: Uncharacteri 86.5 0.33 7.1E-06 27.7 0.8 22 222-243 2-24 (26)
80 PF14570 zf-RING_4: RING/Ubox 83.4 0.8 1.7E-05 30.1 1.7 37 223-259 1-41 (48)
81 KOG1812|consensus 82.5 0.92 2E-05 42.8 2.4 36 219-254 145-183 (384)
82 PF14447 Prok-RING_4: Prokaryo 79.8 0.85 1.8E-05 30.8 0.8 39 219-260 6-44 (55)
83 KOG2817|consensus 79.1 1.9 4.1E-05 40.5 3.1 35 220-254 334-370 (394)
84 COG5236 Uncharacterized conser 78.8 1.9 4.1E-05 39.9 3.0 50 210-260 51-102 (493)
85 KOG2066|consensus 77.7 1.8 3.9E-05 44.0 2.7 38 219-256 783-826 (846)
86 KOG1609|consensus 77.4 1.2 2.6E-05 40.1 1.3 40 220-259 78-127 (323)
87 KOG4718|consensus 75.7 1.3 2.8E-05 38.2 1.0 41 220-260 181-221 (235)
88 PF04641 Rtf2: Rtf2 RING-finge 74.6 2.9 6.3E-05 37.2 3.0 42 218-260 111-155 (260)
89 PF14446 Prok-RING_1: Prokaryo 73.1 3.4 7.3E-05 27.9 2.3 32 219-250 4-38 (54)
90 KOG1001|consensus 71.9 2.4 5.1E-05 43.0 2.0 38 221-260 455-494 (674)
91 KOG0825|consensus 67.3 3.5 7.7E-05 42.0 2.0 35 220-254 96-136 (1134)
92 PF13901 DUF4206: Domain of un 64.1 4.6 0.0001 34.6 2.0 37 218-259 150-193 (202)
93 KOG4275|consensus 63.2 3.9 8.5E-05 37.0 1.4 36 220-260 300-336 (350)
94 smart00249 PHD PHD zinc finger 61.2 4.3 9.3E-05 25.0 1.0 28 222-250 1-31 (47)
95 KOG3268|consensus 60.7 5.1 0.00011 33.7 1.5 19 236-254 187-205 (234)
96 PF13717 zinc_ribbon_4: zinc-r 59.1 2.8 6.1E-05 25.7 -0.2 24 221-244 3-36 (36)
97 PF10272 Tmpp129: Putative tra 58.9 17 0.00038 34.0 4.9 36 218-254 269-326 (358)
98 KOG1815|consensus 57.3 5.7 0.00012 38.1 1.5 37 218-254 68-104 (444)
99 PF14169 YdjO: Cold-inducible 56.9 6.6 0.00014 27.0 1.3 19 220-238 39-57 (59)
100 KOG1829|consensus 56.2 4 8.6E-05 40.5 0.2 40 218-260 509-555 (580)
101 KOG3053|consensus 55.3 5.8 0.00013 35.3 1.0 37 218-254 18-62 (293)
102 KOG2071|consensus 50.6 7.5 0.00016 38.4 1.1 32 219-250 512-555 (579)
103 PF06844 DUF1244: Protein of u 49.7 9.5 0.00021 26.8 1.2 11 243-253 12-22 (68)
104 PF00628 PHD: PHD-finger; Int 49.5 5.8 0.00012 25.6 0.1 29 222-251 1-32 (51)
105 PF02318 FYVE_2: FYVE-type zin 47.4 13 0.00027 29.0 1.7 29 219-247 53-85 (118)
106 KOG3579|consensus 44.7 11 0.00024 34.0 1.2 34 221-255 269-306 (352)
107 PF13719 zinc_ribbon_5: zinc-r 43.2 6.5 0.00014 24.1 -0.4 24 221-244 3-36 (37)
108 PF01363 FYVE: FYVE zinc finge 41.9 13 0.00028 25.7 0.9 34 219-252 8-44 (69)
109 smart00132 LIM Zinc-binding do 41.1 18 0.00039 21.2 1.4 28 222-249 1-29 (39)
110 PF07649 C1_3: C1-like domain; 40.5 16 0.00035 21.1 1.1 27 222-248 2-30 (30)
111 PF00412 LIM: LIM domain; Int 36.2 21 0.00045 23.4 1.2 26 223-248 1-27 (58)
112 KOG3002|consensus 32.8 31 0.00067 31.5 2.1 35 221-260 49-85 (299)
113 cd00065 FYVE FYVE domain; Zinc 32.7 28 0.00062 22.8 1.4 33 221-253 3-38 (57)
114 PF13832 zf-HC5HC2H_2: PHD-zin 32.5 32 0.00069 26.0 1.9 30 219-251 54-88 (110)
115 PF03107 C1_2: C1 domain; Int 31.2 29 0.00062 20.1 1.1 27 222-248 2-30 (30)
116 KOG4362|consensus 30.0 15 0.00032 37.2 -0.4 40 220-260 21-63 (684)
117 KOG0824|consensus 29.5 18 0.00038 33.0 -0.0 41 219-259 104-144 (324)
118 KOG1812|consensus 29.3 30 0.00065 32.7 1.5 40 219-258 305-348 (384)
119 KOG4021|consensus 28.1 61 0.0013 27.8 2.9 13 219-231 107-119 (239)
120 KOG3039|consensus 28.0 35 0.00076 30.4 1.5 33 220-253 43-75 (303)
121 PF03854 zf-P11: P-11 zinc fin 26.8 40 0.00087 22.2 1.3 36 222-260 4-40 (50)
122 KOG1729|consensus 26.6 15 0.00032 33.4 -1.1 34 221-254 215-250 (288)
123 KOG3799|consensus 25.6 91 0.002 25.2 3.4 21 219-244 64-85 (169)
124 PF02891 zf-MIZ: MIZ/SP-RING z 25.0 20 0.00043 23.6 -0.4 39 221-260 3-46 (50)
125 COG3492 Uncharacterized protei 24.4 36 0.00079 25.5 0.8 11 243-253 43-53 (104)
126 KOG2979|consensus 23.8 38 0.00083 30.2 1.0 41 220-260 176-218 (262)
127 KOG1815|consensus 22.9 29 0.00063 33.4 0.1 36 220-255 226-268 (444)
128 smart00064 FYVE Protein presen 22.8 55 0.0012 22.3 1.5 34 220-253 10-46 (68)
129 KOG1100|consensus 22.4 48 0.001 28.6 1.3 34 222-260 160-194 (207)
130 PF05290 Baculo_IE-1: Baculovi 20.3 3.9E+02 0.0084 21.6 5.9 40 220-260 80-126 (140)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=214.73 Aligned_cols=194 Identities=26% Similarity=0.538 Sum_probs=158.0
Q ss_pred cchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHhhheeecccccccccchhHH
Q psy8809 7 ISYIFHI--RIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAV 84 (261)
Q Consensus 7 ~~~~~h~--Rl~~~l~~l~~~d~~~~~~~~~~~~~~~~~~~~~f~fE~~il~~~~~~~~~ky~~~~~d~~~~~~we~k~~ 84 (261)
+...+|. |+...+.++.++|.-++..|+.+.+-.+.+..-+|..||-.++....+..-|-.+-.+|.+.+. ++|..
T Consensus 132 t~~~~~ifSrfS~~~~lL~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD--d~rs~ 209 (491)
T COG5243 132 TDQRFHIFSRFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEFSVLLLNLTSEANKLCVYNYEARDDD--DERST 209 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHhhcccceeeccccccc--cccee
Confidence 3455665 9999999999999999999999876544455555566776666666666667777777777665 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHhhhhhhhhhchhHHHhhhhchhhHHHHHHHHHHHHHHHH
Q psy8809 85 FFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMYIVFVL 164 (261)
Q Consensus 85 ~~~y~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~~~~~~~n~~~~~l~~~~~~~~l~~~f~~ 164 (261)
|.||.|+.-+=+.+ +.|.+++.
T Consensus 210 ~~f~~~v~y~g~tl----------------------------------------------------------lays~l~~ 231 (491)
T COG5243 210 YLFRLEVCYDGLTL----------------------------------------------------------LAYSLLFM 231 (491)
T ss_pred eeeeeehHHHHHHH----------------------------------------------------------HHHHHHHH
Confidence 99999977666555 34555555
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhcCCCCCccccccCCccccccccccccC-----------
Q psy8809 165 IMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSA----------- 233 (261)
Q Consensus 165 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~e~l~~~~~~C~IClee~~~~----------- 233 (261)
..+..+-+|++.+|++|.-+-+..++++.+.+++|+.|+++..+|.+++|++.++|+.|+||+|||-.+
T Consensus 232 ~~~~~~r~Pi~l~r~~~t~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~ 311 (491)
T COG5243 232 YQFPYVRVPIYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDM 311 (491)
T ss_pred hhccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccC
Confidence 555667788999999999999999999999999999999999999999999999999999999995432
Q ss_pred -CEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 234 -SKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 234 -~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+|+|||||++|.+|++.|+||||+||+
T Consensus 312 ~pKrLpCGHilHl~CLknW~ERqQTCPI 339 (491)
T COG5243 312 TPKRLPCGHILHLHCLKNWLERQQTCPI 339 (491)
T ss_pred CcccccccceeeHHHHHHHHHhccCCCc
Confidence 289999999999999999999999996
No 2
>KOG0802|consensus
Probab=99.88 E-value=1.3e-22 Score=197.25 Aligned_cols=202 Identities=32% Similarity=0.559 Sum_probs=167.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCchHHHHHHHHHHHHHHHHHHHHHhhheeeccccccccc
Q psy8809 1 MERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTV-TKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFW 79 (261)
Q Consensus 1 ~~~s~~~~~~~h~Rl~~~l~~l~~~d~~~~~~~~~~~~-~~~~~~~~~f~fE~~il~~~~~~~~~ky~~~~~d~~~~~~w 79 (261)
|+.||..+-+.|.|+...+..+...|...+.+++.+.. ..|.++.+.++||.+++..-......+|.+|..+.....+|
T Consensus 125 l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~~~~~~~~ 204 (543)
T KOG0802|consen 125 LFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTAYRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTADHIHIRS 204 (543)
T ss_pred HHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcchhhcCccc
Confidence 57899999999999999999999999998888888877 67888988899999999999999999999999863334456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHhhhhhhhhhchhHHHhhhhchhhHHHHHHHHHHH
Q psy8809 80 ESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVNKLLIMNAYSSPLFIGFVKVIMY 159 (261)
Q Consensus 80 e~k~~~~~y~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~~~~~~~n~~~~~l~~~~~~~~l~ 159 (261)
|.|..+.++.+.......+.. +
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~----------------------------------------------------------~ 226 (543)
T KOG0802|consen 205 EDLSLLTFTLIIFGCMTLLVL----------------------------------------------------------L 226 (543)
T ss_pred CccceeechhHHHhhhhHHHH----------------------------------------------------------H
Confidence 999999999887766666643 3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHHHHHhhHHHHHh-hhhcCCCCCccc--cccCCccccccccccccC--
Q psy8809 160 IVFVLIMMRVYTLPLFAFRPMYYAA-RSFRKALKDVINSRRAIHH-LNNSFPDATSDE--LTEADNVCIICREEMQSA-- 233 (261)
Q Consensus 160 ~~f~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~-l~~~~~~~~~e~--l~~~~~~C~IClee~~~~-- 233 (261)
+.+..+...+...+++..+.++... ....++.....+.++..+. ++...+.++.++ ..+.++.|+||+|++..+
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~ 306 (543)
T KOG0802|consen 227 IMSAVISLVVHGILLGLVADLYNTPFLEVERRLRELAPLRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHN 306 (543)
T ss_pred hhhHHHHHHHhHhhhhhhHHHhhhhhhhHHHHccchHHHHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccc
Confidence 3344445555666666667777665 6666777777777777776 888899999887 677899999999999986
Q ss_pred --CEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 234 --SKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 234 --~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+++|||||+||.+|+++|++++++||+
T Consensus 307 ~~~~rL~C~Hifh~~CL~~W~er~qtCP~ 335 (543)
T KOG0802|consen 307 ITPKRLPCGHIFHDSCLRSWFERQQTCPT 335 (543)
T ss_pred cccceeecccchHHHHHHHHHHHhCcCCc
Confidence 699999999999999999999999997
No 3
>KOG4628|consensus
Probab=99.60 E-value=2e-15 Score=137.33 Aligned_cols=40 Identities=35% Similarity=1.063 Sum_probs=36.8
Q ss_pred ccccccccccccCC--EEeccCCcccHhhHHHHhhcCC-CCCC
Q psy8809 221 NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQ-TCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~-tCP~ 260 (261)
++|+||+|+|++|+ |.|||+|.||.+|||+||.+.. .||+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv 272 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV 272 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC
Confidence 69999999999888 7999999999999999998864 5996
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=2.8e-14 Score=92.95 Aligned_cols=40 Identities=45% Similarity=1.210 Sum_probs=34.8
Q ss_pred ccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
++|+||++++.++. .++||||.||.+||++|++++.+||+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~ 42 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPV 42 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TT
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCc
Confidence 57999999997543 79999999999999999999999996
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.26 E-value=2.9e-12 Score=92.59 Aligned_cols=42 Identities=43% Similarity=1.052 Sum_probs=34.5
Q ss_pred CCccccccccccccC----------C--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSA----------S--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~----------~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.++.|+||++++.++ . ...+|||.||..||++||+++++||+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 71 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPL 71 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TT
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCC
Confidence 456799999999531 1 45679999999999999999999997
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.14 E-value=2.9e-11 Score=105.68 Aligned_cols=42 Identities=33% Similarity=0.818 Sum_probs=36.0
Q ss_pred CCccccccccccccCC-------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS-------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+.+|+||+|++.++. ...+|||.||.+||++|++++++||+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPl 221 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPV 221 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCC
Confidence 4679999999987542 23469999999999999999999997
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=1.7e-10 Score=73.06 Aligned_cols=38 Identities=29% Similarity=0.904 Sum_probs=33.5
Q ss_pred ccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 223 C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
|+||++++.++...++|||.|+.+|+.+|++++.+||+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 89999999987578999999999999999999999996
No 8
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.3e-10 Score=100.41 Aligned_cols=42 Identities=31% Similarity=0.873 Sum_probs=37.0
Q ss_pred CCccccccccccccCC--EEeccCCcccHhhHHHHhh-cCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQ-RHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~-~~~tCP~ 260 (261)
.+-+|+||++++..++ +.|||+|.||..|+++|+. .+..||+
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv 366 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV 366 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc
Confidence 3469999999998776 6999999999999999997 6778886
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.83 E-value=2.5e-09 Score=68.42 Aligned_cols=39 Identities=41% Similarity=1.023 Sum_probs=33.3
Q ss_pred cccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
+|+||++++.+.....||||.||.+|++.|+++ +..||+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~ 40 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence 599999999655345559999999999999998 778996
No 10
>KOG1734|consensus
Probab=98.82 E-value=3.6e-07 Score=80.11 Aligned_cols=43 Identities=42% Similarity=1.045 Sum_probs=36.3
Q ss_pred cCCccccccccccccCC---------EEeccCCcccHhhHHHHh--hcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS---------KKLPCNHIFHTSCLRSWF--QRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~---------r~LpC~H~FH~~CL~~WL--~~~~tCP~ 260 (261)
.+|+.|+||-..+...+ -+|.|+|+||..|||.|- .++|+||.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY 275 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY 275 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch
Confidence 45789999998886322 589999999999999996 77999995
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.80 E-value=2.2e-09 Score=68.44 Aligned_cols=38 Identities=39% Similarity=0.975 Sum_probs=34.2
Q ss_pred ccccccccccCCEEeccCCcccHhhHHHHhh--cCCCCCC
Q psy8809 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQ--RHQTCPT 260 (261)
Q Consensus 223 C~IClee~~~~~r~LpC~H~FH~~CL~~WL~--~~~tCP~ 260 (261)
|+||+++++++...+||||.|+.+|+++|++ .+..||+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 8999999998855899999999999999998 5677995
No 12
>KOG0317|consensus
Probab=98.78 E-value=2.7e-09 Score=94.31 Aligned_cols=44 Identities=34% Similarity=0.835 Sum_probs=39.7
Q ss_pred cccCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 216 LTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 216 l~~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+..|++|+|..+++ -.+||||+|+..||-+|.+.++.||+
T Consensus 235 i~~a~~kC~LCLe~~~~p-SaTpCGHiFCWsCI~~w~~ek~eCPl 278 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP-SATPCGHIFCWSCILEWCSEKAECPL 278 (293)
T ss_pred CCCCCCceEEEecCCCCC-CcCcCcchHHHHHHHHHHccccCCCc
Confidence 345668999999999887 79999999999999999999999996
No 13
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=5.4e-09 Score=64.55 Aligned_cols=37 Identities=46% Similarity=1.137 Sum_probs=32.3
Q ss_pred ccccccccccCCEEeccCCcccHhhHHHHhh-cCCCCCC
Q psy8809 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260 (261)
Q Consensus 223 C~IClee~~~~~r~LpC~H~FH~~CL~~WL~-~~~tCP~ 260 (261)
|+||++..++. ..+||||.||..|++.|++ .+..||+
T Consensus 1 C~iC~~~~~~~-~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDP-VVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCc-EEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 89999995443 8899999999999999998 6778996
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.71 E-value=9.3e-09 Score=66.22 Aligned_cols=37 Identities=35% Similarity=0.874 Sum_probs=29.3
Q ss_pred ccccccccccCCEEeccCCcccHhhHHHHhhcC----CCCCC
Q psy8809 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRH----QTCPT 260 (261)
Q Consensus 223 C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~----~tCP~ 260 (261)
|+||++.++++ ..|+|||.|..+||.+|.+++ ..||.
T Consensus 1 CpiC~~~~~~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~ 41 (42)
T PF15227_consen 1 CPICLDLFKDP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPE 41 (42)
T ss_dssp ETTTTSB-SSE-EE-SSSSEEEHHHHHHHHCCSSSST---SS
T ss_pred CCccchhhCCc-cccCCcCHHHHHHHHHHHHccCCcCCCCcC
Confidence 89999999998 899999999999999999763 36885
No 15
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.66 E-value=1.2e-08 Score=66.01 Aligned_cols=36 Identities=36% Similarity=0.966 Sum_probs=22.2
Q ss_pred ccccccccccC---CEEeccCCcccHhhHHHHhhcC----CCCC
Q psy8809 223 CIICREEMQSA---SKKLPCNHIFHTSCLRSWFQRH----QTCP 259 (261)
Q Consensus 223 C~IClee~~~~---~r~LpC~H~FH~~CL~~WL~~~----~tCP 259 (261)
|+||+| +.++ ++.|||||+|..+||+++.+++ -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 8752 2889999999999999999854 3687
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.56 E-value=4.2e-08 Score=72.17 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=33.3
Q ss_pred CCcccccccccccc--------CC----EEeccCCcccHhhHHHHhhc---CCCCCC
Q psy8809 219 ADNVCIICREEMQS--------AS----KKLPCNHIFHTSCLRSWFQR---HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~--------~~----r~LpC~H~FH~~CL~~WL~~---~~tCP~ 260 (261)
.|+.|.||+..|+. |+ ..-.|+|.||.+||.+|+++ ++.||+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm 76 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM 76 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCC
Confidence 47899999999982 11 12239999999999999975 578997
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.54 E-value=4.1e-08 Score=65.43 Aligned_cols=40 Identities=35% Similarity=0.850 Sum_probs=35.6
Q ss_pred CccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+..|.||++...+. ..+||||. |+.+|+++|++++..||+
T Consensus 2 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~ 42 (50)
T PF13920_consen 2 DEECPICFENPRDV-VLLPCGHLCFCEECAERLLKRKKKCPI 42 (50)
T ss_dssp HSB-TTTSSSBSSE-EEETTCEEEEEHHHHHHHHHTTSBBTT
T ss_pred cCCCccCCccCCce-EEeCCCChHHHHHHhHHhcccCCCCCc
Confidence 46899999998765 78999999 999999999999999996
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.54 E-value=7.2e-08 Score=66.95 Aligned_cols=39 Identities=26% Similarity=0.530 Sum_probs=36.2
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
-.|+||.+.|+++ ..+||||+|.++||.+|++++.+||.
T Consensus 2 ~~Cpi~~~~~~~P-v~~~~G~v~~~~~i~~~~~~~~~cP~ 40 (63)
T smart00504 2 FLCPISLEVMKDP-VILPSGQTYERRAIEKWLLSHGTDPV 40 (63)
T ss_pred cCCcCCCCcCCCC-EECCCCCEEeHHHHHHHHHHCCCCCC
Confidence 3699999999987 78899999999999999999999996
No 19
>KOG0823|consensus
Probab=98.40 E-value=1.5e-07 Score=81.10 Aligned_cols=41 Identities=29% Similarity=0.673 Sum_probs=35.3
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhc---CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR---HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~---~~tCP~ 260 (261)
+.-+|.||+|.-+++ ..+.|||.|+..||-+||+. .+.||+
T Consensus 46 ~~FdCNICLd~akdP-VvTlCGHLFCWpClyqWl~~~~~~~~cPV 89 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP-VVTLCGHLFCWPCLYQWLQTRPNSKECPV 89 (230)
T ss_pred CceeeeeeccccCCC-EEeecccceehHHHHHHHhhcCCCeeCCc
Confidence 456999999999888 67779999999999999975 556886
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.31 E-value=4e-07 Score=59.08 Aligned_cols=39 Identities=31% Similarity=0.718 Sum_probs=33.5
Q ss_pred ccccccccccc--CCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 222 VCIICREEMQS--ASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~--~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.|.||++++.+ +.+.++|||+|+.+|++.+......||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~ 41 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPI 41 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcC
Confidence 49999999932 3378889999999999999977889996
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.28 E-value=4.3e-07 Score=77.89 Aligned_cols=42 Identities=36% Similarity=0.854 Sum_probs=32.4
Q ss_pred CCccccccccccccC----C---EEe-ccCCcccHhhHHHHhhcC------CCCCC
Q psy8809 219 ADNVCIICREEMQSA----S---KKL-PCNHIFHTSCLRSWFQRH------QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~----~---r~L-pC~H~FH~~CL~~WL~~~------~tCP~ 260 (261)
.+.+|+||+|...++ + ..| +|+|.||..||+.|-+.+ .+||+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi 224 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI 224 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC
Confidence 468999999986431 1 134 599999999999999753 45996
No 22
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.28 E-value=5.6e-07 Score=64.82 Aligned_cols=41 Identities=34% Similarity=0.974 Sum_probs=31.2
Q ss_pred cccccccccccc-----------CC-EEe---ccCCcccHhhHHHHhhcCCCCCCC
Q psy8809 221 NVCIICREEMQS-----------AS-KKL---PCNHIFHTSCLRSWFQRHQTCPTE 261 (261)
Q Consensus 221 ~~C~IClee~~~-----------~~-r~L---pC~H~FH~~CL~~WL~~~~tCP~~ 261 (261)
+.|+||+..+.+ ++ -.+ -|+|.||.+||..||..+..||+.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld 76 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLD 76 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCC
Confidence 577777776652 22 112 299999999999999999999984
No 23
>KOG0320|consensus
Probab=98.25 E-value=6.2e-07 Score=74.28 Aligned_cols=42 Identities=24% Similarity=0.697 Sum_probs=36.4
Q ss_pred CCccccccccccccCC-EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS-KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.-..|+||++.+++.. .-..|||+|++.||+.-++....||+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~ 172 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPT 172 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCC
Confidence 3468999999998764 33669999999999999999999997
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=8.1e-07 Score=83.19 Aligned_cols=42 Identities=24% Similarity=0.669 Sum_probs=37.9
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+....|+||.+.+.++ ..+||||.||..||+.|+..+..||+
T Consensus 24 e~~l~C~IC~d~~~~P-vitpCgH~FCs~CI~~~l~~~~~CP~ 65 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP-VLTSCSHTFCSLCIRRCLSNQPKCPL 65 (397)
T ss_pred ccccCCCcCchhhhCc-cCCCCCCchhHHHHHHHHhCCCCCCC
Confidence 3467999999999887 68899999999999999999889997
No 25
>KOG2930|consensus
Probab=98.08 E-value=1.7e-06 Score=65.37 Aligned_cols=41 Identities=32% Similarity=0.942 Sum_probs=32.2
Q ss_pred cccccccccccc-------------CCEEe---ccCCcccHhhHHHHhhcCCCCCCC
Q psy8809 221 NVCIICREEMQS-------------ASKKL---PCNHIFHTSCLRSWFQRHQTCPTE 261 (261)
Q Consensus 221 ~~C~IClee~~~-------------~~r~L---pC~H~FH~~CL~~WL~~~~tCP~~ 261 (261)
+.|+|||...-+ ++-.. .|+|.||..||..||+.++.||+.
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLd 103 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLD 103 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCc
Confidence 789999876542 11122 299999999999999999999984
No 26
>KOG0828|consensus
Probab=98.06 E-value=3.3e-05 Score=72.99 Aligned_cols=43 Identities=35% Similarity=0.883 Sum_probs=33.6
Q ss_pred cCCcccccccccccc-----CC-----------EEeccCCcccHhhHHHHhh-cCCCCCC
Q psy8809 218 EADNVCIICREEMQS-----AS-----------KKLPCNHIFHTSCLRSWFQ-RHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~-----~~-----------r~LpC~H~FH~~CL~~WL~-~~~tCP~ 260 (261)
+...+|+||+.+..- +. ..+||.|+||.+|+..|++ .+-.||+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPv 628 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPV 628 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCc
Confidence 445789999998861 10 2569999999999999999 5657775
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.04 E-value=3.4e-06 Score=56.04 Aligned_cols=39 Identities=31% Similarity=0.859 Sum_probs=30.1
Q ss_pred cccccccccccCC-EEeccC-----CcccHhhHHHHhhc--CCCCCC
Q psy8809 222 VCIICREEMQSAS-KKLPCN-----HIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~-r~LpC~-----H~FH~~CL~~WL~~--~~tCP~ 260 (261)
.|-||+++.+++. ...||. |.+|.+|++.|+.. +.+||+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~i 47 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEI 47 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCC
Confidence 4899998433333 688985 89999999999955 458996
No 28
>KOG1493|consensus
Probab=98.04 E-value=1.4e-06 Score=62.24 Aligned_cols=43 Identities=37% Similarity=0.936 Sum_probs=33.1
Q ss_pred cCCccccccccccccCC--EEec----------cCCcccHhhHHHHhhc---CCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLP----------CNHIFHTSCLRSWFQR---HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~Lp----------C~H~FH~~CL~~WL~~---~~tCP~ 260 (261)
..+++|-|||-+|.... -++| |.|.||..||.+|+.. |..||+
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPm 75 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPM 75 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCc
Confidence 35679999999998311 2333 8999999999999954 567997
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4e-06 Score=73.55 Aligned_cols=42 Identities=38% Similarity=0.847 Sum_probs=37.1
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHH-HhhcCCC-CCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRS-WFQRHQT-CPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~-WL~~~~t-CP~ 260 (261)
..|..|+||+|....+ ..+||||+|+..||-. |-.++.- ||+
T Consensus 213 ~~d~kC~lC~e~~~~p-s~t~CgHlFC~~Cl~~~~t~~k~~~Cpl 256 (271)
T COG5574 213 LADYKCFLCLEEPEVP-SCTPCGHLFCLSCLLISWTKKKYEFCPL 256 (271)
T ss_pred ccccceeeeecccCCc-ccccccchhhHHHHHHHHHhhccccCch
Confidence 3577899999999887 7999999999999999 9987766 996
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.90 E-value=7.3e-06 Score=59.00 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=34.1
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
.-.|+||.+-|+++ ..+||||.|-++||..|+++ +.+||+
T Consensus 4 ~f~CpIt~~lM~dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~ 44 (73)
T PF04564_consen 4 EFLCPITGELMRDP-VILPSGHTYERSAIERWLEQNGGTDPF 44 (73)
T ss_dssp GGB-TTTSSB-SSE-EEETTSEEEEHHHHHHHHCTTSSB-TT
T ss_pred ccCCcCcCcHhhCc-eeCCcCCEEcHHHHHHHHHcCCCCCCC
Confidence 35899999999998 78999999999999999998 889996
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.65 E-value=1.2e-05 Score=80.79 Aligned_cols=43 Identities=35% Similarity=0.933 Sum_probs=35.4
Q ss_pred cCCccccccccccccCCEEec------cCCcccHhhHHHHhhc--CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLP------CNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp------C~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
++-++||||..-...-+|++| |.|.||..|+-+|+.. +.+||+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPl 1517 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPL 1517 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCc
Confidence 456899999998874346666 8899999999999966 678996
No 32
>KOG0287|consensus
Probab=97.53 E-value=3.5e-05 Score=69.87 Aligned_cols=39 Identities=33% Similarity=0.742 Sum_probs=36.9
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
-.|-||.|-|..+ ..+||||-|+.-||+..|..++.||+
T Consensus 24 LRC~IC~eyf~ip-~itpCsHtfCSlCIR~~L~~~p~CP~ 62 (442)
T KOG0287|consen 24 LRCGICFEYFNIP-MITPCSHTFCSLCIRKFLSYKPQCPT 62 (442)
T ss_pred HHHhHHHHHhcCc-eeccccchHHHHHHHHHhccCCCCCc
Confidence 4899999999987 89999999999999999999999996
No 33
>KOG2164|consensus
Probab=97.40 E-value=8.7e-05 Score=70.65 Aligned_cols=40 Identities=30% Similarity=0.712 Sum_probs=33.2
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcC-----CCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-----QTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~-----~tCP~ 260 (261)
+..|+||+++...+ ..+.|||+||..||-+.+... ..||+
T Consensus 186 ~~~CPICL~~~~~p-~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPi 230 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-VRTNCGHIFCGPCILQYWNYSAIKGPCSCPI 230 (513)
T ss_pred CCcCCcccCCCCcc-cccccCceeeHHHHHHHHhhhcccCCccCCc
Confidence 78999999998877 455599999999999988553 56885
No 34
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.37 E-value=7e-05 Score=71.78 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHhhheeecccccccccchh
Q psy8809 3 RSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESK 82 (261)
Q Consensus 3 ~s~~~~~~~h~Rl~~~l~~l~~~d~~~~~~~~~~~~~~~~~~~~~f~fE~~il~~~~~~~~~ky~~~~~d~~~~~~we~k 82 (261)
.|++.++.-|.|-+..-..++++..++..+ ..+...-+.+..++..| ++.....++.++..|+++++|.+++..||+.
T Consensus 372 As~~~s~~rH~R~L~v~~~Ll~~P~~~~y~-l~~~~~i~tWll~v~s~-~~~t~vkv~~sl~iY~Lf~vd~~~~~~WE~L 449 (508)
T PF13705_consen 372 ASHNRSFWRHFRALSVCLFLLVFPLYLSYY-LWSFFPIDTWLLIVTSF-CVETIVKVLGSLAIYILFMVDARREEPWEKL 449 (508)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccchhhc
Confidence 467888999999998888888888765544 44444344555555544 4477788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8809 83 AVFFLYMELVMSFVKVIM 100 (261)
Q Consensus 83 ~~~~~y~el~~~~~~l~~ 100 (261)
++|+||++-+...+++++
T Consensus 450 DD~VYyv~a~~~~~EFl~ 467 (508)
T PF13705_consen 450 DDYVYYVRATGRVLEFLV 467 (508)
T ss_pred ccEEEEEeccCcEeeehh
Confidence 999999998888887743
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.33 E-value=9.9e-05 Score=50.60 Aligned_cols=42 Identities=24% Similarity=0.549 Sum_probs=30.3
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhc--CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
....|+|.+..++++++...|||+|-++.|.+|+++ +..||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457999999999999777889999999999999944 567996
No 36
>KOG0804|consensus
Probab=97.24 E-value=0.00013 Score=68.35 Aligned_cols=38 Identities=42% Similarity=1.052 Sum_probs=31.2
Q ss_pred ccccccccccccCC---EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~---r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+|++|+|-|.+.. ...+|.|.||-.|+..|- ..+||+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpv 216 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPV 216 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChh
Confidence 69999999998654 566699999999999996 446664
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.08 E-value=0.0003 Score=62.73 Aligned_cols=40 Identities=25% Similarity=0.594 Sum_probs=36.9
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
-..|-||-+-++.+ -.+||||-|+.-||+..|..|+.||+
T Consensus 25 ~lrC~IC~~~i~ip-~~TtCgHtFCslCIR~hL~~qp~CP~ 64 (391)
T COG5432 25 MLRCRICDCRISIP-CETTCGHTFCSLCIRRHLGTQPFCPV 64 (391)
T ss_pred HHHhhhhhheeecc-eecccccchhHHHHHHHhcCCCCCcc
Confidence 35899999999887 78899999999999999999999996
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.03 E-value=0.00021 Score=51.00 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=16.4
Q ss_pred Cccccccccccc-cCC---EE---eccCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQ-SAS---KK---LPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~-~~~---r~---LpC~H~FH~~CL~~WL~~ 254 (261)
+.+|.||.+... ++. .. -.|++.||..||.+||..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~ 43 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS 43 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH
Confidence 458999999876 221 11 249999999999999953
No 39
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.93 E-value=0.0017 Score=49.47 Aligned_cols=31 Identities=26% Similarity=0.824 Sum_probs=27.1
Q ss_pred CCccccccccccccCC-EEeccCCcccHhhHH
Q psy8809 219 ADNVCIICREEMQSAS-KKLPCNHIFHTSCLR 249 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-r~LpC~H~FH~~CL~ 249 (261)
.+..|++|...+.++. ...||||+||.+|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4678999999998765 689999999999975
No 40
>KOG0825|consensus
Probab=96.80 E-value=0.00029 Score=69.96 Aligned_cols=39 Identities=28% Similarity=0.602 Sum_probs=29.0
Q ss_pred cccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 222 VCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.|++|+..+.++. -+-+|+|.||..|+..|-...++||+
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPi 165 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPV 165 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCch
Confidence 3444444444333 35669999999999999999999997
No 41
>KOG1039|consensus
Probab=96.70 E-value=0.0007 Score=62.51 Aligned_cols=43 Identities=35% Similarity=0.897 Sum_probs=33.5
Q ss_pred cCCccccccccccccCC------EEec-cCCcccHhhHHHHh--hc-----CCCCCC
Q psy8809 218 EADNVCIICREEMQSAS------KKLP-CNHIFHTSCLRSWF--QR-----HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~------r~Lp-C~H~FH~~CL~~WL--~~-----~~tCP~ 260 (261)
..+.+|.||+|...+.. ..|| |.|.|+.+||+.|= .+ .+.||.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~ 215 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPF 215 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCc
Confidence 34789999999987543 2346 99999999999998 44 467884
No 42
>KOG1814|consensus
Probab=96.65 E-value=0.0011 Score=61.67 Aligned_cols=43 Identities=37% Similarity=0.733 Sum_probs=34.0
Q ss_pred CccccccCCccccccccccccCC--EEeccCCcccHhhHHHHhhc
Q psy8809 212 TSDELTEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 212 ~~e~l~~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~ 254 (261)
+.+...++-..|.||.++..... +.+||+|+|+++|++..+..
T Consensus 176 ~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 176 TLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred HHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 33444456679999999987534 79999999999999999953
No 43
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.60 E-value=0.00083 Score=53.63 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=28.5
Q ss_pred Ccccccccccccc--CCEEeccC------CcccHhhHHHHh
Q psy8809 220 DNVCIICREEMQS--ASKKLPCN------HIFHTSCLRSWF 252 (261)
Q Consensus 220 ~~~C~IClee~~~--~~r~LpC~------H~FH~~CL~~WL 252 (261)
.-+|+||++...+ |+.-++|| |.||.+|++.|=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4689999999998 65677787 999999999993
No 44
>KOG2879|consensus
Probab=96.52 E-value=0.0084 Score=53.24 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=35.8
Q ss_pred ccCCccccccccccccCCEEeccCCcccHhhHHHHhhc--CCCCCC
Q psy8809 217 TEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 217 ~~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
...+.+|++|-+.-..+-...||||+|+.-|++.=..- ..+||.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~ 281 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL 281 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc
Confidence 46788999999997766456779999999999997764 467874
No 45
>KOG1941|consensus
Probab=96.52 E-value=0.00076 Score=62.39 Aligned_cols=42 Identities=36% Similarity=0.921 Sum_probs=34.5
Q ss_pred cCCccccccccccccCC---EEeccCCcccHhhHHHHhhcC--CCCC
Q psy8809 218 EADNVCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQRH--QTCP 259 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~---r~LpC~H~FH~~CL~~WL~~~--~tCP 259 (261)
+.+--|-.|-|-+-..+ .-|||.|+||..|+...|+++ ++||
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP 409 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCP 409 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence 34678999999876332 579999999999999999874 6899
No 46
>KOG4265|consensus
Probab=96.36 E-value=0.0031 Score=57.86 Aligned_cols=42 Identities=31% Similarity=0.782 Sum_probs=36.7
Q ss_pred cCCccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+++.+|.||+++-++. -.|||.|. .+.+|.+.---++..||+
T Consensus 288 ~~gkeCVIClse~rdt-~vLPCRHLCLCs~Ca~~Lr~q~n~CPI 330 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT-VVLPCRHLCLCSGCAKSLRYQTNNCPI 330 (349)
T ss_pred cCCCeeEEEecCCcce-EEecchhhehhHhHHHHHHHhhcCCCc
Confidence 4578999999998876 89999994 899999998778889996
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.32 E-value=0.0011 Score=46.29 Aligned_cols=39 Identities=31% Similarity=0.646 Sum_probs=21.6
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
--.|++|.+-+++++-.-.|.|+|+..||++-+..+ ||+
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~--CPv 45 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE--CPV 45 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB---SS
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCC--CCC
Confidence 347999999999985556699999999999966643 885
No 48
>KOG0297|consensus
Probab=96.29 E-value=0.0016 Score=61.47 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=37.8
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+..|++|...+.++.....|||.|+..|+.+|+.+++.||.
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~ 61 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPV 61 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcc
Confidence 3467999999999998544689999999999999999999994
No 49
>KOG2114|consensus
Probab=95.96 E-value=0.0077 Score=60.74 Aligned_cols=37 Identities=24% Similarity=0.756 Sum_probs=31.3
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..|..|.-..+-|..---|||.||.+|+. +....||-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~ 877 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPK 877 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCc
Confidence 58999999988776667799999999998 66778883
No 50
>KOG0801|consensus
Probab=95.86 E-value=0.0026 Score=52.24 Aligned_cols=30 Identities=30% Similarity=0.875 Sum_probs=25.2
Q ss_pred ccCCccccccccccccCC--EEeccCCcccHh
Q psy8809 217 TEADNVCIICREEMQSAS--KKLPCNHIFHTS 246 (261)
Q Consensus 217 ~~~~~~C~IClee~~~~~--r~LpC~H~FH~~ 246 (261)
.....+|.||+||.+.++ .+|||-.+||++
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 344569999999999887 599999999974
No 51
>KOG0978|consensus
Probab=95.83 E-value=0.0023 Score=63.76 Aligned_cols=39 Identities=26% Similarity=0.794 Sum_probs=32.0
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhh-cCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~-~~~tCP~ 260 (261)
-.|+.|-+-.++. ....|||+||.+|+++-++ |+..||.
T Consensus 644 LkCs~Cn~R~Kd~-vI~kC~H~FC~~Cvq~r~etRqRKCP~ 683 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA-VITKCGHVFCEECVQTRYETRQRKCPK 683 (698)
T ss_pred eeCCCccCchhhH-HHHhcchHHHHHHHHHHHHHhcCCCCC
Confidence 4899999776664 3444999999999999996 4788995
No 52
>KOG4159|consensus
Probab=95.68 E-value=0.0079 Score=56.71 Aligned_cols=42 Identities=24% Similarity=0.667 Sum_probs=37.4
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.++-+|.||.+.+.++ ..+||||.|+..||+.-+.++..||+
T Consensus 82 ~sef~c~vc~~~l~~p-v~tpcghs~c~~Cl~r~ld~~~~cp~ 123 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP-VVTPCGHSFCLECLDRSLDQETECPL 123 (398)
T ss_pred cchhhhhhhHhhcCCC-ccccccccccHHHHHHHhccCCCCcc
Confidence 5678999999998887 57799999999999998898999995
No 53
>KOG0311|consensus
Probab=95.63 E-value=0.002 Score=59.02 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=35.0
Q ss_pred CCccccccccccccCCEEec-cCCcccHhhHHHHhhc-CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
.+-.|+||++-++.. +..+ |.|.|+.+||..=+.. +.+||+
T Consensus 42 ~~v~c~icl~llk~t-mttkeClhrfc~~ci~~a~r~gn~ecpt 84 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT-MTTKECLHRFCFDCIWKALRSGNNECPT 84 (381)
T ss_pred hhhccHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 457999999998876 5666 9999999999999865 889996
No 54
>KOG2034|consensus
Probab=95.24 E-value=0.029 Score=57.06 Aligned_cols=34 Identities=29% Similarity=0.680 Sum_probs=28.5
Q ss_pred cCCccccccccccccCC-EEeccCCcccHhhHHHH
Q psy8809 218 EADNVCIICREEMQSAS-KKLPCNHIFHTSCLRSW 251 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~-r~LpC~H~FH~~CL~~W 251 (261)
+.++.|.+|-..+-..+ -+-||||.||.+||..=
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 36789999998887654 68999999999999764
No 55
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.98 E-value=0.016 Score=37.98 Aligned_cols=38 Identities=32% Similarity=0.808 Sum_probs=26.2
Q ss_pred ccccccccccCC-EEeccC-----CcccHhhHHHHhhc--CCCCCC
Q psy8809 223 CIICREEMQSAS-KKLPCN-----HIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 223 C~IClee~~~~~-r~LpC~-----H~FH~~CL~~WL~~--~~tCP~ 260 (261)
|=||+++-+++. -..||+ -.-|.+||+.|+.. +.+||+
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~ 46 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEI 46 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCC
Confidence 679999877654 577865 37899999999974 567875
No 56
>KOG0826|consensus
Probab=94.92 E-value=0.47 Score=43.38 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=35.9
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...+.|++|+..-.++...---|-+||..|+-+.+..++.||+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPV 340 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPV 340 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCc
Confidence 3457999999987776333336999999999999999999997
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.80 E-value=0.013 Score=49.74 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=33.8
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP 259 (261)
....|.||-++|+.+ ....|||.|+..|.-.=.+..+.|-
T Consensus 195 IPF~C~iCKkdy~sp-vvt~CGH~FC~~Cai~~y~kg~~C~ 234 (259)
T COG5152 195 IPFLCGICKKDYESP-VVTECGHSFCSLCAIRKYQKGDECG 234 (259)
T ss_pred Cceeehhchhhccch-hhhhcchhHHHHHHHHHhccCCcce
Confidence 345999999999988 6778999999999888777777763
No 58
>KOG1785|consensus
Probab=94.77 E-value=0.011 Score=55.08 Aligned_cols=39 Identities=44% Similarity=0.953 Sum_probs=33.1
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhc--CCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
+.|-||-|.=++- |.=||||..+..|+..|=.. .++||.
T Consensus 370 eLCKICaendKdv-kIEPCGHLlCt~CLa~WQ~sd~gq~CPF 410 (563)
T KOG1785|consen 370 ELCKICAENDKDV-KIEPCGHLLCTSCLAAWQDSDEGQTCPF 410 (563)
T ss_pred HHHHHhhccCCCc-ccccccchHHHHHHHhhcccCCCCCCCc
Confidence 5799999885543 88899999999999999844 689995
No 59
>KOG1428|consensus
Probab=94.45 E-value=0.025 Score=60.07 Aligned_cols=38 Identities=39% Similarity=0.861 Sum_probs=30.2
Q ss_pred cCCcccccccccccc--CCEEeccCCcccHhhHHHHhhcC
Q psy8809 218 EADNVCIICREEMQS--ASKKLPCNHIFHTSCLRSWFQRH 255 (261)
Q Consensus 218 ~~~~~C~IClee~~~--~~r~LpC~H~FH~~CL~~WL~~~ 255 (261)
..|+.|.||.-|--. +..+|.|+|+||.+|.+.-|+++
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~R 3523 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENR 3523 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhc
Confidence 367899999877543 33789999999999999877763
No 60
>KOG0309|consensus
Probab=94.32 E-value=0.025 Score=56.50 Aligned_cols=26 Identities=38% Similarity=0.948 Sum_probs=23.5
Q ss_pred EeccCCcccHhhHHHHhhcCCCCCCC
Q psy8809 236 KLPCNHIFHTSCLRSWFQRHQTCPTE 261 (261)
Q Consensus 236 ~LpC~H~FH~~CL~~WL~~~~tCP~~ 261 (261)
...|+|+-|.+|.+.|++.+..||.+
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~CpsG 1070 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPSG 1070 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCCC
Confidence 45699999999999999999999974
No 61
>KOG1952|consensus
Probab=94.21 E-value=0.02 Score=57.92 Aligned_cols=38 Identities=26% Similarity=0.853 Sum_probs=29.1
Q ss_pred ccCCccccccccccccCCEEec---cCCcccHhhHHHHhhc
Q psy8809 217 TEADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQR 254 (261)
Q Consensus 217 ~~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~~ 254 (261)
.+...+|.||.|.++.....-. |=|+||.+||++|-.+
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs 228 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS 228 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH
Confidence 3455799999999985443333 6699999999999854
No 62
>KOG0802|consensus
Probab=94.20 E-value=0.021 Score=56.15 Aligned_cols=50 Identities=42% Similarity=0.983 Sum_probs=43.4
Q ss_pred hcCCCCCccccccCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 206 NSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 206 ~~~~~~~~e~l~~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...+.++.+++.+..+.|.||++++ ..+..||. |..|++.|+..+.+||+
T Consensus 465 ~~~s~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~---~~~~l~~~~~~~~~~pl 514 (543)
T KOG0802|consen 465 NSLSEATPSQLREPNDVCAICYQEM--SARITPCS---HALCLRKWLYVQEVCPL 514 (543)
T ss_pred CCCCCCChhhhhcccCcchHHHHHH--Hhcccccc---chhHHHhhhhhccccCC
Confidence 3466777888888889999999999 44888899 99999999999999996
No 63
>KOG1813|consensus
Probab=93.98 E-value=0.02 Score=51.33 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=36.3
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.-...|-||++.|.++ ....|||.|+..|--+=+++.+.|++
T Consensus 239 ~~Pf~c~icr~~f~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~v 280 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRP-VVTKCGHYFCEVCALKPYQKGEKCYV 280 (313)
T ss_pred cCCccccccccccccc-hhhcCCceeehhhhccccccCCccee
Confidence 3456799999999988 67889999999999988888888874
No 64
>KOG4692|consensus
Probab=93.74 E-value=0.042 Score=50.56 Aligned_cols=40 Identities=28% Similarity=0.579 Sum_probs=33.5
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTC 258 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tC 258 (261)
..|+.|+||...-.+. .-.||+|.=+.+||.+-+-..+.|
T Consensus 420 sEd~lCpICyA~pi~A-vf~PC~H~SC~~CI~qHlmN~k~C 459 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA-VFAPCSHRSCYGCITQHLMNCKRC 459 (489)
T ss_pred cccccCcceecccchh-hccCCCCchHHHHHHHHHhcCCee
Confidence 3578999998775544 688999999999999999887776
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.18 E-value=0.11 Score=46.97 Aligned_cols=40 Identities=25% Similarity=0.683 Sum_probs=32.6
Q ss_pred CccccccccccccCCEEec-cCCcccHhhHHHHh-hcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLP-CNHIFHTSCLRSWF-QRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL-~~~~tCP~ 260 (261)
.-.|+.|..-..++ .++| |||.|+.+||..-| +....||-
T Consensus 274 ~LkCplc~~Llrnp-~kT~cC~~~fc~eci~~al~dsDf~Cpn 315 (427)
T COG5222 274 SLKCPLCHCLLRNP-MKTPCCGHTFCDECIGTALLDSDFKCPN 315 (427)
T ss_pred cccCcchhhhhhCc-ccCccccchHHHHHHhhhhhhccccCCC
Confidence 36899999999888 4557 89999999999776 55777883
No 66
>PHA03096 p28-like protein; Provisional
Probab=92.54 E-value=0.057 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.705 Sum_probs=27.8
Q ss_pred ccccccccccccCC------EEec-cCCcccHhhHHHHhhc
Q psy8809 221 NVCIICREEMQSAS------KKLP-CNHIFHTSCLRSWFQR 254 (261)
Q Consensus 221 ~~C~IClee~~~~~------r~Lp-C~H~FH~~CL~~WL~~ 254 (261)
.+|.||+|...... ..|| |.|.|+..|++.|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 68999999877421 3677 9999999999999843
No 67
>KOG4445|consensus
Probab=92.17 E-value=0.066 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.750 Sum_probs=29.1
Q ss_pred CccccccccccccCC--EEeccCCcccHhhHHHHh
Q psy8809 220 DNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWF 252 (261)
Q Consensus 220 ~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL 252 (261)
...|.||+--|.+++ -+++|-|.||..|+...|
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 458999999999876 688999999999998776
No 68
>KOG1002|consensus
Probab=92.07 E-value=0.092 Score=50.75 Aligned_cols=42 Identities=21% Similarity=0.677 Sum_probs=34.4
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc-----CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-----HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-----~~tCP~ 260 (261)
.+..+|-+|-|+-++. ....|.|.|++-|++.+.+. +-+||+
T Consensus 534 k~~~~C~lc~d~aed~-i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~ 580 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY-IESSCHHKFCRLCIKEYVESFMENNNVTCPV 580 (791)
T ss_pred cCceeecccCChhhhh-HhhhhhHHHHHHHHHHHHHhhhcccCCCCcc
Confidence 3456999999998776 57779999999999998853 568996
No 69
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.41 E-value=0.14 Score=32.82 Aligned_cols=38 Identities=26% Similarity=0.808 Sum_probs=23.3
Q ss_pred ccccccccccCCEEe--ccCCcccHhhHHHHhhcCC--CCCC
Q psy8809 223 CIICREEMQSASKKL--PCNHIFHTSCLRSWFQRHQ--TCPT 260 (261)
Q Consensus 223 C~IClee~~~~~r~L--pC~H~FH~~CL~~WL~~~~--tCP~ 260 (261)
|.+|.|-...|.+-- .|+=.+|..|++.++..++ .||-
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~ 42 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPN 42 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcC
Confidence 778998888885544 3999999999999997755 7994
No 70
>KOG4172|consensus
Probab=91.36 E-value=0.068 Score=36.05 Aligned_cols=42 Identities=26% Similarity=0.516 Sum_probs=29.8
Q ss_pred cCCccccccccccccCCEEeccCCc-ccHhhH-HHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHI-FHTSCL-RSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~-FH~~CL-~~WL~~~~tCP~ 260 (261)
+-+++|.||.|.-.+. ..-.|||. .+.+|- +.|=..+..||+
T Consensus 5 ~~~dECTICye~pvds-VlYtCGHMCmCy~Cg~rl~~~~~g~CPi 48 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDS-VLYTCGHMCMCYACGLRLKKALHGCCPI 48 (62)
T ss_pred ccccceeeeccCcchH-HHHHcchHHhHHHHHHHHHHccCCcCcc
Confidence 3458999999986554 34559994 566774 455557889996
No 71
>KOG3970|consensus
Probab=90.74 E-value=0.14 Score=44.35 Aligned_cols=35 Identities=29% Similarity=0.702 Sum_probs=30.1
Q ss_pred CccccccccccccCC-EEeccCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQSAS-KKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~~~~-r~LpC~H~FH~~CL~~WL~~ 254 (261)
+..|..|--...+++ .+|-|=|+||.+|+++|-.+
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~ 85 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAAN 85 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhh
Confidence 457999988888777 68999999999999999754
No 72
>KOG1571|consensus
Probab=90.60 E-value=0.5 Score=43.73 Aligned_cols=39 Identities=28% Similarity=0.725 Sum_probs=28.6
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPTE 261 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~~ 261 (261)
..+.|.||+++.++. .-+||||.=+ |..- -+...+||+.
T Consensus 304 ~p~lcVVcl~e~~~~-~fvpcGh~cc--ct~c-s~~l~~CPvC 342 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA-VFVPCGHVCC--CTLC-SKHLPQCPVC 342 (355)
T ss_pred CCCceEEecCCccce-eeecCCcEEE--chHH-HhhCCCCchh
Confidence 457999999999885 8999999843 4332 2345669973
No 73
>KOG3039|consensus
Probab=89.85 E-value=0.26 Score=43.41 Aligned_cols=41 Identities=15% Similarity=0.484 Sum_probs=35.3
Q ss_pred CccccccccccccCC---EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~---r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...|++|++..++.. ..-||||++..+|..........||+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv 264 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPV 264 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccC
Confidence 458999999999754 35569999999999999999989986
No 74
>KOG0827|consensus
Probab=89.47 E-value=0.038 Score=51.39 Aligned_cols=41 Identities=24% Similarity=0.566 Sum_probs=33.8
Q ss_pred CCccccccccccccC---CEEeccCCcccHhhHHHHhhcCCCCC
Q psy8809 219 ADNVCIICREEMQSA---SKKLPCNHIFHTSCLRSWFQRHQTCP 259 (261)
Q Consensus 219 ~~~~C~IClee~~~~---~r~LpC~H~FH~~CL~~WL~~~~tCP 259 (261)
....|+||-+.++.. .+.+-|||.+|.+||++||.....||
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~ 238 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLP 238 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhH
Confidence 346899999999864 25677999999999999998766665
No 75
>KOG2932|consensus
Probab=89.42 E-value=0.18 Score=45.80 Aligned_cols=41 Identities=27% Similarity=0.673 Sum_probs=29.8
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..-.-|.-|--....-.|.+||+|+|+.+|.+. +..+.||.
T Consensus 88 p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~ 128 (389)
T KOG2932|consen 88 PRVHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPL 128 (389)
T ss_pred cceEeecccCCcceeeecccccchhhhhhhhhc--CccccCcC
Confidence 334567777655554338999999999999886 55668885
No 76
>KOG1940|consensus
Probab=89.17 E-value=0.23 Score=44.67 Aligned_cols=41 Identities=29% Similarity=0.670 Sum_probs=34.6
Q ss_pred CccccccccccccC---CEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSA---SKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~---~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...|+||.|.+.+. +..+||||.-|..|.+.-...+-+||+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~ 201 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPI 201 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCc
Confidence 34599999998753 268899999999999998877799997
No 77
>KOG0298|consensus
Probab=89.08 E-value=0.13 Score=54.45 Aligned_cols=41 Identities=24% Similarity=0.566 Sum_probs=36.2
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...|.||++.++.......|||.++..|...|+.++..||+
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~ 1193 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPI 1193 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcc
Confidence 35899999999954357779999999999999999999996
No 78
>KOG0269|consensus
Probab=86.89 E-value=0.45 Score=47.92 Aligned_cols=40 Identities=28% Similarity=0.611 Sum_probs=30.4
Q ss_pred ccccccccccccCCEEec-cCCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..|.+|..........-+ |||.=|.+|+++|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888777654322223 9999999999999999888774
No 79
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=86.50 E-value=0.33 Score=27.75 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.9
Q ss_pred cccccccccccCCEEec-cCCcc
Q psy8809 222 VCIICREEMQSASKKLP-CNHIF 243 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp-C~H~F 243 (261)
+|+-|..+.....+.=| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 68999999887778888 99988
No 80
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=83.43 E-value=0.8 Score=30.15 Aligned_cols=37 Identities=24% Similarity=0.702 Sum_probs=18.8
Q ss_pred ccccccccccCC-EEec--cCCcccHhhHHHHhh-cCCCCC
Q psy8809 223 CIICREEMQSAS-KKLP--CNHIFHTSCLRSWFQ-RHQTCP 259 (261)
Q Consensus 223 C~IClee~~~~~-r~Lp--C~H~FH~~CL~~WL~-~~~tCP 259 (261)
|++|.|++...+ ...| ||+.....|...=++ .+..||
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CP 41 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCP 41 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-T
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCC
Confidence 789999995433 5667 789999999887776 477888
No 81
>KOG1812|consensus
Probab=82.46 E-value=0.92 Score=42.84 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=26.7
Q ss_pred CCccccccccccccCC---EEeccCCcccHhhHHHHhhc
Q psy8809 219 ADNVCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 219 ~~~~C~IClee~~~~~---r~LpC~H~FH~~CL~~WL~~ 254 (261)
...+|.||..+...++ ...-|+|.|+.+|.++-++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 3579999995544332 23449999999999988864
No 82
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=79.78 E-value=0.85 Score=30.85 Aligned_cols=39 Identities=26% Similarity=0.721 Sum_probs=29.6
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
....|..|...=+.+ ..+||||.-..+|-+. ++-.-||.
T Consensus 6 ~~~~~~~~~~~~~~~-~~~pCgH~I~~~~f~~--~rYngCPf 44 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG-TVLPCGHLICDNCFPG--ERYNGCPF 44 (55)
T ss_pred cceeEEEcccccccc-ccccccceeeccccCh--hhccCCCC
Confidence 345788888775555 7999999999999776 56667774
No 83
>KOG2817|consensus
Probab=79.06 E-value=1.9 Score=40.51 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=28.5
Q ss_pred Cccccccccccc--cCCEEeccCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQ--SASKKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~--~~~r~LpC~H~FH~~CL~~WL~~ 254 (261)
--.|+|=+|.-+ +++.+|+|||+--++-|..-...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n 370 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN 370 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhC
Confidence 368999777665 35589999999999999997755
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.80 E-value=1.9 Score=39.91 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=35.8
Q ss_pred CCCccccccCCccccccccccccCCEEeccCCcccHhhHHHH--hhcCCCCCC
Q psy8809 210 DATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSW--FQRHQTCPT 260 (261)
Q Consensus 210 ~~~~e~l~~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~W--L~~~~tCP~ 260 (261)
+++.+|..+.+..|-||-+..+-. -.+||+|.-+--|--.- |-.+..||+
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs-~~~PC~H~~CH~Ca~RlRALY~~K~C~~ 102 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYS-ARYPCGHQICHACAVRLRALYMQKGCPL 102 (493)
T ss_pred cccccccccccceeEEecCCceEE-EeccCCchHHHHHHHHHHHHHhccCCCc
Confidence 445555445667999999987754 69999999998885432 445677774
No 85
>KOG2066|consensus
Probab=77.72 E-value=1.8 Score=44.01 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.3
Q ss_pred CCccccccccccc------cCCEEeccCCcccHhhHHHHhhcCC
Q psy8809 219 ADNVCIICREEMQ------SASKKLPCNHIFHTSCLRSWFQRHQ 256 (261)
Q Consensus 219 ~~~~C~IClee~~------~~~r~LpC~H~FH~~CL~~WL~~~~ 256 (261)
-++.|.-|.+... +....+-|||.||+.|+..-..+++
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~ 826 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA 826 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc
Confidence 3568999998876 2337888999999999988877765
No 86
>KOG1609|consensus
Probab=77.36 E-value=1.2 Score=40.14 Aligned_cols=40 Identities=38% Similarity=0.850 Sum_probs=29.9
Q ss_pred CccccccccccccC---CEEeccC-----CcccHhhHHHHhh--cCCCCC
Q psy8809 220 DNVCIICREEMQSA---SKKLPCN-----HIFHTSCLRSWFQ--RHQTCP 259 (261)
Q Consensus 220 ~~~C~IClee~~~~---~r~LpC~-----H~FH~~CL~~WL~--~~~tCP 259 (261)
+..|-||.++..+. .-..||. +..|..|++.|+. ....|.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~Ce 127 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCE 127 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeee
Confidence 36899999987643 2577864 6779999999997 445553
No 87
>KOG4718|consensus
Probab=75.73 E-value=1.3 Score=38.19 Aligned_cols=41 Identities=24% Similarity=0.650 Sum_probs=36.3
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
-.+|.+|.+-.-.+.|.=.||=.+|..|+...+++.+.||-
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cph 221 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPH 221 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCc
Confidence 35899999998888677779999999999999999999983
No 88
>PF04641 Rtf2: Rtf2 RING-finger
Probab=74.61 E-value=2.9 Score=37.21 Aligned_cols=42 Identities=21% Similarity=0.590 Sum_probs=32.4
Q ss_pred cCCccccccccccccCC---EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~---r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...-.|+|...+|.... -.-||||+|-..+++.- .....||+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~ 155 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPV 155 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccc
Confidence 44569999999996432 35589999999999996 23567885
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=73.06 E-value=3.4 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.625 Sum_probs=24.5
Q ss_pred CCccccccccccccCC--EEec-cCCcccHhhHHH
Q psy8809 219 ADNVCIICREEMQSAS--KKLP-CNHIFHTSCLRS 250 (261)
Q Consensus 219 ~~~~C~IClee~~~~~--r~Lp-C~H~FH~~CL~~ 250 (261)
.+..|++|-+.+++++ ..=| ||=.+|++|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3568999999996433 4555 999999999643
No 90
>KOG1001|consensus
Probab=71.94 E-value=2.4 Score=43.00 Aligned_cols=38 Identities=29% Similarity=0.637 Sum_probs=30.3
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhc--CCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
..|.||.+ .+..-..+|||.|+.+|+..=++. .+.||.
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~ 494 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPL 494 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcH
Confidence 79999999 444478889999999999988865 335774
No 91
>KOG0825|consensus
Probab=67.28 E-value=3.5 Score=42.04 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=28.5
Q ss_pred CccccccccccccCC---EEec---cCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQSAS---KKLP---CNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~~~~---r~Lp---C~H~FH~~CL~~WL~~ 254 (261)
.++|.+|.-++.+++ ...| |+|-++..||.+|..+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 468888888888633 4667 9999999999999965
No 92
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.08 E-value=4.6 Score=34.59 Aligned_cols=37 Identities=32% Similarity=0.917 Sum_probs=25.6
Q ss_pred cCCccccccccc-----ccc-CC-EEeccCCcccHhhHHHHhhcCCCCC
Q psy8809 218 EADNVCIICREE-----MQS-AS-KKLPCNHIFHTSCLRSWFQRHQTCP 259 (261)
Q Consensus 218 ~~~~~C~IClee-----~~~-~~-r~LpC~H~FH~~CL~~WL~~~~tCP 259 (261)
..+..|-+|.++ |.. .. +--.|+-+||++|.. +..||
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~Cp 193 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCP 193 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCC
Confidence 457899999875 111 22 334499999999977 26688
No 93
>KOG4275|consensus
Probab=63.23 E-value=3.9 Score=37.01 Aligned_cols=36 Identities=31% Similarity=0.735 Sum_probs=25.3
Q ss_pred CccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+.-|+||++.-.+= --|+|||. =+.+|-+ +-+.||+
T Consensus 300 ~~LC~ICmDaP~DC-vfLeCGHmVtCt~CGk----rm~eCPI 336 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC-VFLECGHMVTCTKCGK----RMNECPI 336 (350)
T ss_pred HHHHHHHhcCCcce-EEeecCcEEeehhhcc----ccccCch
Confidence 67999999986543 78999995 3555532 3457775
No 94
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3268|consensus
Probab=60.71 E-value=5.1 Score=33.72 Aligned_cols=19 Identities=32% Similarity=0.999 Sum_probs=16.4
Q ss_pred EeccCCcccHhhHHHHhhc
Q psy8809 236 KLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 236 ~LpC~H~FH~~CL~~WL~~ 254 (261)
-..||.-||.-|+..||..
T Consensus 187 N~qCgkpFHqiCL~dWLRg 205 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRG 205 (234)
T ss_pred ccccCCcHHHHHHHHHHHH
Confidence 4569999999999999953
No 96
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=59.13 E-value=2.8 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.724 Sum_probs=14.8
Q ss_pred ccccccccccccCC-------EEec---cCCccc
Q psy8809 221 NVCIICREEMQSAS-------KKLP---CNHIFH 244 (261)
Q Consensus 221 ~~C~IClee~~~~~-------r~Lp---C~H~FH 244 (261)
-+|+=|.-.|+-++ +++. |||.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 36788888777322 3333 778875
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.93 E-value=17 Score=33.99 Aligned_cols=36 Identities=25% Similarity=0.724 Sum_probs=23.0
Q ss_pred cCCccccccccccccCCEEe-----------------cc-----CCcccHhhHHHHhhc
Q psy8809 218 EADNVCIICREEMQSASKKL-----------------PC-----NHIFHTSCLRSWFQR 254 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~L-----------------pC-----~H~FH~~CL~~WL~~ 254 (261)
+..+.|.-|+.+-.+- |.. +| .-..+.+|+-+|+..
T Consensus 269 ~e~e~CigC~~~~~~v-kl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFas 326 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNV-KLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFAS 326 (358)
T ss_pred cccCCccccccCCCCc-EEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhh
Confidence 3467899999865421 111 23 345688999999944
No 98
>KOG1815|consensus
Probab=57.30 E-value=5.7 Score=38.14 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=30.6
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~ 254 (261)
..+.+|-||.+......-.++|||.|...|...-+++
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3467999999998763357789999999999999854
No 99
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=56.87 E-value=6.6 Score=26.98 Aligned_cols=19 Identities=37% Similarity=0.889 Sum_probs=16.6
Q ss_pred CccccccccccccCCEEec
Q psy8809 220 DNVCIICREEMQSASKKLP 238 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~Lp 238 (261)
...|++|..+|..+.|.||
T Consensus 39 ~p~CPlC~s~M~~~~r~Lp 57 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTRMLP 57 (59)
T ss_pred CccCCCcCCccccceeecc
Confidence 4699999999999888776
No 100
>KOG1829|consensus
Probab=56.20 E-value=4 Score=40.50 Aligned_cols=40 Identities=25% Similarity=0.750 Sum_probs=24.9
Q ss_pred cCCccccccccc-----c-ccCC-EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREE-----M-QSAS-KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee-----~-~~~~-r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..+..|.+|..+ | .++. |...||++||+.|++. .+.-||-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPr 555 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPR 555 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCc
Confidence 346789999321 1 0111 5666999999999764 3334883
No 101
>KOG3053|consensus
Probab=55.33 E-value=5.8 Score=35.30 Aligned_cols=37 Identities=30% Similarity=0.706 Sum_probs=27.5
Q ss_pred cCCccccccccccccCCE---EeccC-----CcccHhhHHHHhhc
Q psy8809 218 EADNVCIICREEMQSASK---KLPCN-----HIFHTSCLRSWFQR 254 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r---~LpC~-----H~FH~~CL~~WL~~ 254 (261)
+.+.-|=||.+.=++..+ .-||. |=-|.+||..|...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDE 62 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDE 62 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhH
Confidence 456789999987555422 45663 88999999999954
No 102
>KOG2071|consensus
Probab=50.63 E-value=7.5 Score=38.43 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=23.7
Q ss_pred CCcccccccccccc------------CCEEeccCCcccHhhHHH
Q psy8809 219 ADNVCIICREEMQS------------ASKKLPCNHIFHTSCLRS 250 (261)
Q Consensus 219 ~~~~C~IClee~~~------------~~r~LpC~H~FH~~CL~~ 250 (261)
....|+||.|+|+. +...+.=|-+||..|+..
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e 555 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSE 555 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeeccCceeeccccch
Confidence 44689999999983 112343689999999865
No 103
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=49.72 E-value=9.5 Score=26.77 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=8.2
Q ss_pred ccHhhHHHHhh
Q psy8809 243 FHTSCLRSWFQ 253 (261)
Q Consensus 243 FH~~CL~~WL~ 253 (261)
|+++||..|..
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999984
No 104
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.50 E-value=5.8 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.655 Sum_probs=20.4
Q ss_pred cccccccccccCCEEec---cCCcccHhhHHHH
Q psy8809 222 VCIICREEMQSASKKLP---CNHIFHTSCLRSW 251 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp---C~H~FH~~CL~~W 251 (261)
.|.||.+.-.++ ..+. |+-.||..|++.=
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCC
Confidence 488999844433 4444 7899999998653
No 105
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=47.41 E-value=13 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=19.7
Q ss_pred CCcccccccccccc----CCEEeccCCcccHhh
Q psy8809 219 ADNVCIICREEMQS----ASKKLPCNHIFHTSC 247 (261)
Q Consensus 219 ~~~~C~IClee~~~----~~r~LpC~H~FH~~C 247 (261)
++..|++|..+|.- +..-..|+|..+..|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C 85 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKC 85 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTS
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCcc
Confidence 56799999998752 323445999999888
No 106
>KOG3579|consensus
Probab=44.71 E-value=11 Score=34.01 Aligned_cols=34 Identities=24% Similarity=0.664 Sum_probs=28.8
Q ss_pred ccccccccccccCCEEecc----CCcccHhhHHHHhhcC
Q psy8809 221 NVCIICREEMQSASKKLPC----NHIFHTSCLRSWFQRH 255 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC----~H~FH~~CL~~WL~~~ 255 (261)
-.|.+|.|-++|. .-..| .|.|+..|=|+-.++|
T Consensus 269 LcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhh
Confidence 4799999999987 56666 6999999999999875
No 107
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.17 E-value=6.5 Score=24.13 Aligned_cols=24 Identities=25% Similarity=0.762 Sum_probs=15.1
Q ss_pred ccccccccccccCC-------EEec---cCCccc
Q psy8809 221 NVCIICREEMQSAS-------KKLP---CNHIFH 244 (261)
Q Consensus 221 ~~C~IClee~~~~~-------r~Lp---C~H~FH 244 (261)
-+|+=|...|+-++ +++. |+|+|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 36888888877321 3333 778875
No 108
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=41.93 E-value=13 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.548 Sum_probs=18.2
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHHHh
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL 252 (261)
....|.+|..+|.--.|+-- ||++|..+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 35689999999975445444 89999999976543
No 109
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=41.07 E-value=18 Score=21.24 Aligned_cols=28 Identities=18% Similarity=0.596 Sum_probs=19.5
Q ss_pred cccccccccccCCEEe-ccCCcccHhhHH
Q psy8809 222 VCIICREEMQSASKKL-PCNHIFHTSCLR 249 (261)
Q Consensus 222 ~C~IClee~~~~~r~L-pC~H~FH~~CL~ 249 (261)
.|..|.+.+.++...+ .=+..||.+|.+
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~ 29 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFK 29 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCC
Confidence 3888988887653333 357889998853
No 110
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.54 E-value=16 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=10.5
Q ss_pred cccccccccccCC--EEeccCCcccHhhH
Q psy8809 222 VCIICREEMQSAS--KKLPCNHIFHTSCL 248 (261)
Q Consensus 222 ~C~IClee~~~~~--r~LpC~H~FH~~CL 248 (261)
.|.+|.++...+. +-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 5889998887622 56779999999995
No 111
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=36.19 E-value=21 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.581 Sum_probs=19.0
Q ss_pred ccccccccccCCEEe-ccCCcccHhhH
Q psy8809 223 CIICREEMQSASKKL-PCNHIFHTSCL 248 (261)
Q Consensus 223 C~IClee~~~~~r~L-pC~H~FH~~CL 248 (261)
|+-|.+.+.++...+ .-|..||.+|.
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf 27 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF 27 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc
Confidence 677888887665553 57888888884
No 112
>KOG3002|consensus
Probab=32.84 E-value=31 Score=31.54 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=27.2
Q ss_pred ccccccccccccCCEEecc--CCcccHhhHHHHhhcCCCCCC
Q psy8809 221 NVCIICREEMQSASKKLPC--NHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC--~H~FH~~CL~~WL~~~~tCP~ 260 (261)
-+|+||.+.+..+ ...| ||.-+.+|=. +....||+
T Consensus 49 leCPvC~~~l~~P--i~QC~nGHlaCssC~~---~~~~~CP~ 85 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP--IFQCDNGHLACSSCRT---KVSNKCPT 85 (299)
T ss_pred ccCchhhccCccc--ceecCCCcEehhhhhh---hhcccCCc
Confidence 5899999999987 4556 7999999965 44666765
No 113
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=32.68 E-value=28 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.565 Sum_probs=24.5
Q ss_pred ccccccccccccCCEE---eccCCcccHhhHHHHhh
Q psy8809 221 NVCIICREEMQSASKK---LPCNHIFHTSCLRSWFQ 253 (261)
Q Consensus 221 ~~C~IClee~~~~~r~---LpC~H~FH~~CL~~WL~ 253 (261)
..|.+|-..|....++ -.||++|..+|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5799999888754333 33999999999876543
No 114
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=32.53 E-value=32 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=22.3
Q ss_pred CCccccccccccccCCEEec-----cCCcccHhhHHHH
Q psy8809 219 ADNVCIICREEMQSASKKLP-----CNHIFHTSCLRSW 251 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp-----C~H~FH~~CL~~W 251 (261)
....|.||.+. .|. .+. |...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~-~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGA-CIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--Cce-eEEcCCCCCCcCCCHHHHHHC
Confidence 35799999998 342 222 7789999998764
No 115
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=31.19 E-value=29 Score=20.09 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=19.8
Q ss_pred cccccccccccC-C-EEeccCCcccHhhH
Q psy8809 222 VCIICREEMQSA-S-KKLPCNHIFHTSCL 248 (261)
Q Consensus 222 ~C~IClee~~~~-~-r~LpC~H~FH~~CL 248 (261)
.|.+|.++.... . +-.+|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 588998887755 3 45568888888873
No 116
>KOG4362|consensus
Probab=30.02 E-value=15 Score=37.18 Aligned_cols=40 Identities=33% Similarity=0.708 Sum_probs=32.6
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCC---CCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ---TCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~---tCP~ 260 (261)
..+|+||.+.+.++ ..+.|.|.|...|+-.=+++.. .||+
T Consensus 21 ~lEc~ic~~~~~~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~l 63 (684)
T KOG4362|consen 21 ILECPICLEHVKEP-SLLKCDHIFLKFCLNKLFESKKGPKQCAL 63 (684)
T ss_pred hccCCceeEEeecc-chhhhhHHHHhhhhhceeeccCccccchh
Confidence 56899999999987 6778999999999988776644 4554
No 117
>KOG0824|consensus
Probab=29.51 E-value=18 Score=33.03 Aligned_cols=41 Identities=27% Similarity=0.652 Sum_probs=34.0
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP 259 (261)
..+.|-||...+.-+.+.=-|.|.|...|.+.|.+....||
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~ 144 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCP 144 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccc
Confidence 45789999999986644444999999999999998877776
No 118
>KOG1812|consensus
Probab=29.28 E-value=30 Score=32.69 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCccccccccccc--cCCE--EeccCCcccHhhHHHHhhcCCCC
Q psy8809 219 ADNVCIICREEMQ--SASK--KLPCNHIFHTSCLRSWFQRHQTC 258 (261)
Q Consensus 219 ~~~~C~IClee~~--~~~r--~LpC~H~FH~~CL~~WL~~~~tC 258 (261)
.-..|+.|.-.++ .|.. .=.|||.|+..|..+|-..+..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~ 348 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGEC 348 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccc
Confidence 4568999987765 3332 22399999999999998877655
No 119
>KOG4021|consensus
Probab=28.11 E-value=61 Score=27.76 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=11.1
Q ss_pred CCccccccccccc
Q psy8809 219 ADNVCIICREEMQ 231 (261)
Q Consensus 219 ~~~~C~IClee~~ 231 (261)
.++.|+||++++-
T Consensus 107 ~gnpCPICRDeyL 119 (239)
T KOG4021|consen 107 LGNPCPICRDEYL 119 (239)
T ss_pred cCCCCCccccceE
Confidence 4679999999975
No 120
>KOG3039|consensus
Probab=27.99 E-value=35 Score=30.36 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=29.0
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhh
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ 253 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~ 253 (261)
-+.|+.|+....++ ...|=||+|.++||-+.+.
T Consensus 43 FdcCsLtLqPc~dP-vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP-VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC-ccCCCCeeeeHHHHHHHHH
Confidence 46899999999988 7888999999999988763
No 121
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=26.84 E-value=40 Score=22.17 Aligned_cols=36 Identities=25% Similarity=0.592 Sum_probs=21.6
Q ss_pred cccccccccccCCEEeccC-CcccHhhHHHHhhcCCCCCC
Q psy8809 222 VCIICREEMQSASKKLPCN-HIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~r~LpC~-H~FH~~CL~~WL~~~~tCP~ 260 (261)
.|--|+-+- . ....|+ |..+.+|+..-+.+...||+
T Consensus 4 nCKsCWf~~--k-~Li~C~dHYLCl~CLt~ml~~s~~C~i 40 (50)
T PF03854_consen 4 NCKSCWFAN--K-GLIKCSDHYLCLNCLTLMLSRSDRCPI 40 (50)
T ss_dssp ---SS-S----S-SEEE-SS-EEEHHHHHHT-SSSSEETT
T ss_pred cChhhhhcC--C-CeeeecchhHHHHHHHHHhccccCCCc
Confidence 455666442 2 356686 99999999999999999985
No 122
>KOG1729|consensus
Probab=26.64 E-value=15 Score=33.43 Aligned_cols=34 Identities=29% Similarity=0.739 Sum_probs=26.9
Q ss_pred ccccccccccccCC--EEeccCCcccHhhHHHHhhc
Q psy8809 221 NVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 221 ~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~ 254 (261)
.+|.+|.+++..+. ....|.-++|..|+..|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 49999999997522 45556669999999999965
No 123
>KOG3799|consensus
Probab=25.62 E-value=91 Score=25.15 Aligned_cols=21 Identities=29% Similarity=0.711 Sum_probs=14.1
Q ss_pred CCccccccccc-cccCCEEeccCCccc
Q psy8809 219 ADNVCIICREE-MQSASKKLPCNHIFH 244 (261)
Q Consensus 219 ~~~~C~IClee-~~~~~r~LpC~H~FH 244 (261)
.|.+|-||... |.+| |||.-|
T Consensus 64 ddatC~IC~KTKFADG-----~GH~C~ 85 (169)
T KOG3799|consen 64 DDATCGICHKTKFADG-----CGHNCS 85 (169)
T ss_pred cCcchhhhhhcccccc-----cCcccc
Confidence 36799999864 4555 666543
No 124
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=25.05 E-value=20 Score=23.55 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=22.5
Q ss_pred ccccccccccccCCEEeccCCcccHhhHHHHhhcCC-----CCCC
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-----TCPT 260 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~-----tCP~ 260 (261)
-.|+|....++.+.|-..|.|.=. -=++.|++.++ .||+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPi 46 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQC-FDLESFLESNQRTPKWKCPI 46 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TT
T ss_pred eeCCCCCCEEEeCccCCcCcccce-ECHHHHHHHhhccCCeECcC
Confidence 369999999998878888999632 22567776533 4885
No 125
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.37 E-value=36 Score=25.46 Aligned_cols=11 Identities=36% Similarity=1.313 Sum_probs=9.6
Q ss_pred ccHhhHHHHhh
Q psy8809 243 FHTSCLRSWFQ 253 (261)
Q Consensus 243 FH~~CL~~WL~ 253 (261)
|+.+||..|..
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 88999999984
No 126
>KOG2979|consensus
Probab=23.82 E-value=38 Score=30.17 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=33.4
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhc--CCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~--~~tCP~ 260 (261)
+..|+|=...+..+.+--.|||+|-++=+.+-+.. .-.||+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 46899988888887656669999999999999966 446886
No 127
>KOG1815|consensus
Probab=22.88 E-value=29 Score=33.35 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=27.3
Q ss_pred CccccccccccccCC-------EEeccCCcccHhhHHHHhhcC
Q psy8809 220 DNVCIICREEMQSAS-------KKLPCNHIFHTSCLRSWFQRH 255 (261)
Q Consensus 220 ~~~C~IClee~~~~~-------r~LpC~H~FH~~CL~~WL~~~ 255 (261)
...|+.|....+... +..+|+|.|+..|+.+|-...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 345999998887432 233699999999999998763
No 128
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1100|consensus
Probab=22.44 E-value=48 Score=28.59 Aligned_cols=34 Identities=32% Similarity=0.670 Sum_probs=24.3
Q ss_pred cccccccccccCCEEeccCC-cccHhhHHHHhhcCCCCCC
Q psy8809 222 VCIICREEMQSASKKLPCNH-IFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~r~LpC~H-~FH~~CL~~WL~~~~tCP~ 260 (261)
.|-.|.+.=.. +-.+||.| +++..|=.+ -++||+
T Consensus 160 ~Cr~C~~~~~~-VlllPCrHl~lC~~C~~~----~~~CPi 194 (207)
T KOG1100|consen 160 SCRKCGEREAT-VLLLPCRHLCLCGICDES----LRICPI 194 (207)
T ss_pred cceecCcCCce-EEeecccceEeccccccc----CccCCC
Confidence 39999888443 37899985 677888544 556885
No 130
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=20.35 E-value=3.9e+02 Score=21.57 Aligned_cols=40 Identities=28% Similarity=0.640 Sum_probs=27.8
Q ss_pred CccccccccccccCCEEe-c---cCCcccHhhHH-HHh--hcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKL-P---CNHIFHTSCLR-SWF--QRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~L-p---C~H~FH~~CL~-~WL--~~~~tCP~ 260 (261)
--+|.||.|.-.++ +-| | ||-.-+..|-- -|= .-++.||.
T Consensus 80 lYeCnIC~etS~ee-~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPv 126 (140)
T PF05290_consen 80 LYECNICKETSAEE-RFLKPNECCGYSICNACYANLWKFCNLYPVCPV 126 (140)
T ss_pred ceeccCcccccchh-hcCCcccccchHHHHHHHHHHHHHcccCCCCCc
Confidence 46899999997765 433 3 89877777754 453 33778885
Done!