Query psy8809
Match_columns 261
No_of_seqs 234 out of 1753
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 19:49:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.4 1.3E-13 4.5E-18 102.5 4.0 43 218-260 38-82 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.4 2.1E-13 7.2E-18 91.4 3.3 42 219-260 4-48 (55)
3 2kiz_A E3 ubiquitin-protein li 99.4 3.9E-13 1.3E-17 94.4 4.6 43 218-260 12-56 (69)
4 2ecl_A Ring-box protein 2; RNF 99.4 2.8E-13 9.6E-18 98.6 3.9 42 219-260 14-69 (81)
5 1x4j_A Ring finger protein 38; 99.4 2.4E-13 8.3E-18 97.1 3.2 43 218-260 21-65 (75)
6 2ep4_A Ring finger protein 24; 99.3 7.5E-13 2.6E-17 94.1 4.4 43 218-260 13-57 (74)
7 2ect_A Ring finger protein 126 99.3 6.4E-13 2.2E-17 95.5 4.0 43 218-260 13-57 (78)
8 3dpl_R Ring-box protein 1; ubi 99.3 8.6E-13 2.9E-17 101.0 3.8 42 219-260 36-94 (106)
9 2ecm_A Ring finger and CHY zin 99.3 1.1E-12 3.9E-17 87.7 3.6 42 219-260 4-48 (55)
10 1chc_A Equine herpes virus-1 r 99.3 9.1E-13 3.1E-17 92.1 2.6 43 218-260 3-45 (68)
11 2ea6_A Ring finger protein 4; 99.3 2.2E-12 7.4E-17 90.1 3.6 43 218-260 13-61 (69)
12 2d8t_A Dactylidin, ring finger 99.2 3E-12 1E-16 90.5 3.4 42 218-260 13-54 (71)
13 2ysj_A Tripartite motif-contai 99.2 8.5E-12 2.9E-16 85.9 5.2 42 218-260 18-62 (63)
14 3ng2_A RNF4, snurf, ring finge 99.2 2.6E-12 9E-17 90.3 2.2 42 219-260 9-56 (71)
15 2ecj_A Tripartite motif-contai 99.2 6.9E-12 2.3E-16 84.7 3.7 42 218-260 13-57 (58)
16 2xeu_A Ring finger protein 4; 99.2 4.3E-12 1.5E-16 87.2 2.4 41 220-260 3-49 (64)
17 1v87_A Deltex protein 2; ring- 99.2 5.3E-12 1.8E-16 97.1 3.1 42 219-260 24-87 (114)
18 4a0k_B E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 99.4 0.2 42 219-260 47-105 (117)
19 2djb_A Polycomb group ring fin 99.2 2.2E-11 7.4E-16 86.2 4.4 42 218-260 13-55 (72)
20 2csy_A Zinc finger protein 183 99.1 2.4E-11 8.2E-16 87.9 4.1 42 218-260 13-54 (81)
21 4ayc_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 97.9 3.4 40 220-260 53-92 (138)
22 2d8s_A Cellular modulator of i 99.1 2.3E-11 7.9E-16 88.3 3.7 43 218-260 13-63 (80)
23 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.7E-16 87.1 1.8 41 218-260 13-53 (70)
24 2yur_A Retinoblastoma-binding 99.1 4.6E-11 1.6E-15 85.0 4.0 41 219-260 14-57 (74)
25 2ct2_A Tripartite motif protei 99.1 6.2E-11 2.1E-15 86.6 4.6 43 218-260 13-61 (88)
26 2ysl_A Tripartite motif-contai 99.1 7.9E-11 2.7E-15 83.1 4.5 42 218-260 18-62 (73)
27 2ecy_A TNF receptor-associated 99.1 7E-11 2.4E-15 82.1 3.6 41 219-260 14-55 (66)
28 1t1h_A Gspef-atpub14, armadill 99.0 1.2E-10 4.2E-15 83.4 3.6 41 219-260 7-48 (78)
29 2ct0_A Non-SMC element 1 homol 99.0 1.5E-10 5.1E-15 82.7 3.9 43 218-260 13-57 (74)
30 2ecw_A Tripartite motif-contai 99.0 2.7E-10 9.3E-15 82.3 4.6 42 218-260 17-64 (85)
31 2ecv_A Tripartite motif-contai 99.0 2.2E-10 7.5E-15 82.8 3.9 42 218-260 17-64 (85)
32 2egp_A Tripartite motif-contai 99.0 8.2E-11 2.8E-15 84.3 1.2 42 218-260 10-58 (79)
33 2y43_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 86.9 2.6 41 219-260 21-62 (99)
34 4ap4_A E3 ubiquitin ligase RNF 99.0 1.4E-10 4.8E-15 90.7 2.6 43 218-260 5-53 (133)
35 2ckl_A Polycomb group ring fin 99.0 3E-10 1E-14 86.5 3.6 41 219-260 14-55 (108)
36 3lrq_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 86.9 2.1 41 219-260 21-63 (100)
37 3ztg_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 82.6 4.2 42 218-260 11-55 (92)
38 3fl2_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 86.5 4.5 41 219-260 51-92 (124)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 6.1E-10 2.1E-14 87.0 2.2 43 218-260 70-118 (133)
40 1g25_A CDK-activating kinase a 98.8 1.5E-09 5.1E-14 75.0 3.5 41 220-260 3-48 (65)
41 3l11_A E3 ubiquitin-protein li 98.8 4.9E-10 1.7E-14 86.3 1.0 42 218-260 13-55 (115)
42 1rmd_A RAG1; V(D)J recombinati 98.8 1.1E-09 3.8E-14 84.4 2.4 41 219-260 22-63 (116)
43 1jm7_A BRCA1, breast cancer ty 98.8 1.3E-09 4.5E-14 83.1 2.5 40 220-260 21-63 (112)
44 2ckl_B Ubiquitin ligase protei 98.8 1.6E-09 5.5E-14 88.6 2.9 40 220-260 54-95 (165)
45 2kr4_A Ubiquitin conjugation f 98.8 3.7E-09 1.3E-13 77.3 4.3 41 219-260 13-53 (85)
46 3hct_A TNF receptor-associated 98.8 2.2E-09 7.5E-14 83.1 2.9 41 219-260 17-58 (118)
47 1z6u_A NP95-like ring finger p 98.7 4E-09 1.4E-13 85.3 3.3 41 219-260 77-118 (150)
48 2y1n_A E3 ubiquitin-protein li 98.7 7.8E-09 2.7E-13 95.3 3.8 40 220-260 332-372 (389)
49 2kre_A Ubiquitin conjugation f 98.6 1E-08 3.6E-13 77.3 3.0 41 219-260 28-68 (100)
50 2vje_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 70.0 2.7 41 219-260 7-50 (64)
51 1wgm_A Ubiquitin conjugation f 98.6 2E-08 6.7E-13 75.5 3.4 41 219-260 21-62 (98)
52 2vje_B MDM4 protein; proto-onc 98.6 1.7E-08 5.7E-13 69.6 2.7 42 218-260 5-49 (63)
53 2yu4_A E3 SUMO-protein ligase 98.6 1.6E-08 5.3E-13 75.3 2.5 41 219-260 6-53 (94)
54 3knv_A TNF receptor-associated 98.6 1.1E-08 3.8E-13 81.9 1.8 41 219-260 30-71 (141)
55 1bor_A Transcription factor PM 98.6 6.7E-09 2.3E-13 69.8 0.1 38 219-260 5-42 (56)
56 1jm7_B BARD1, BRCA1-associated 98.5 1.3E-08 4.4E-13 78.6 0.2 39 219-260 21-60 (117)
57 1e4u_A Transcriptional repress 98.5 7.1E-08 2.4E-12 69.4 3.1 43 218-260 9-55 (78)
58 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.9E-12 80.7 7.1 41 219-260 207-248 (281)
59 4ic3_A E3 ubiquitin-protein li 98.4 5E-08 1.7E-12 69.3 1.0 37 219-260 23-60 (74)
60 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.9E-12 77.8 2.5 41 219-260 17-58 (170)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.3 1.9E-07 6.4E-12 63.8 2.6 42 218-260 4-52 (60)
62 3k1l_B Fancl; UBC, ring, RWD, 98.3 2.1E-07 7.1E-12 84.1 3.1 37 218-254 306-349 (381)
63 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.6E-12 63.9 1.9 40 220-260 3-43 (61)
64 2f42_A STIP1 homology and U-bo 98.3 1.2E-06 4E-11 72.8 6.1 41 219-260 105-146 (179)
65 2ea5_A Cell growth regulator w 98.2 8E-07 2.7E-11 62.1 3.5 41 215-260 10-51 (68)
66 1wim_A KIAA0161 protein; ring 98.2 4.7E-07 1.6E-11 67.0 2.1 35 220-254 5-41 (94)
67 2ecg_A Baculoviral IAP repeat- 98.1 5E-07 1.7E-11 64.1 0.6 36 220-260 25-61 (75)
68 3htk_C E3 SUMO-protein ligase 98.1 3.7E-06 1.3E-10 73.4 5.3 42 219-260 180-223 (267)
69 2yho_A E3 ubiquitin-protein li 98.0 1.4E-06 4.9E-11 62.5 0.8 36 220-260 18-54 (79)
70 3t6p_A Baculoviral IAP repeat- 97.7 5.4E-06 1.9E-10 75.5 1.0 37 219-260 294-331 (345)
71 3nw0_A Non-structural maintena 97.4 4.8E-05 1.6E-09 65.8 2.6 41 220-260 180-222 (238)
72 3vk6_A E3 ubiquitin-protein li 97.3 0.00012 4.1E-09 54.5 3.0 39 222-260 3-42 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.015 5.1E-07 42.8 1.6 33 220-252 3-38 (101)
74 1wil_A KIAA1045 protein; ring 92.2 0.081 2.8E-06 37.9 2.6 32 218-251 13-47 (89)
75 3m62_A Ubiquitin conjugation f 91.1 0.51 1.8E-05 48.0 8.0 40 220-260 891-931 (968)
76 2lri_C Autoimmune regulator; Z 82.7 0.46 1.6E-05 32.3 1.4 34 218-255 10-46 (66)
77 1zfo_A LAsp-1; LIM domain, zin 73.6 1.4 4.7E-05 25.1 1.3 28 220-247 3-30 (31)
78 2ko5_A Ring finger protein Z; 72.7 1.5 5.1E-05 32.0 1.6 38 220-260 28-66 (99)
79 2yt5_A Metal-response element- 59.2 2.6 8.9E-05 28.1 0.6 33 219-251 5-41 (66)
80 1zbd_B Rabphilin-3A; G protein 56.6 3.2 0.00011 32.1 0.9 30 218-247 53-86 (134)
81 2l5u_A Chromodomain-helicase-D 54.5 5.7 0.0002 26.2 1.7 32 218-253 9-43 (61)
82 2k16_A Transcription initiatio 54.1 3.9 0.00014 27.9 0.9 33 219-252 17-52 (75)
83 2l43_A N-teminal domain from h 52.2 13 0.00043 26.4 3.4 33 218-250 23-59 (88)
84 1we9_A PHD finger family prote 52.0 5.6 0.00019 26.2 1.4 32 219-250 5-39 (64)
85 1wev_A Riken cDNA 1110020M19; 51.3 2.4 8.4E-05 30.3 -0.6 35 218-252 14-52 (88)
86 1f62_A Transcription factor WS 50.0 4 0.00014 25.7 0.4 30 222-252 2-34 (51)
87 2d8v_A Zinc finger FYVE domain 47.9 8.1 0.00028 26.2 1.6 31 219-251 7-38 (67)
88 1mm2_A MI2-beta; PHD, zinc fin 46.9 4.8 0.00016 26.6 0.3 32 218-253 7-41 (61)
89 2zet_C Melanophilin; complex, 45.2 26 0.0009 27.5 4.5 30 219-248 67-100 (153)
90 2yql_A PHD finger protein 21A; 45.1 4 0.00014 26.3 -0.2 32 218-253 7-41 (56)
91 2co8_A NEDD9 interacting prote 44.0 11 0.00038 25.8 2.0 31 219-249 14-44 (82)
92 1vfy_A Phosphatidylinositol-3- 44.0 9.5 0.00032 26.0 1.5 31 220-250 11-44 (73)
93 2ku3_A Bromodomain-containing 43.1 15 0.00051 25.0 2.5 33 218-250 14-50 (71)
94 2ysm_A Myeloid/lymphoid or mix 42.3 5.9 0.0002 29.2 0.2 36 218-253 5-42 (111)
95 2vpb_A Hpygo1, pygopus homolog 41.5 13 0.00043 24.9 1.8 31 219-249 7-41 (65)
96 2cs3_A Protein C14ORF4, MY039 41.3 28 0.00097 24.5 3.6 37 219-255 14-53 (93)
97 3fyb_A Protein of unknown func 41.3 9.9 0.00034 27.8 1.3 11 243-253 42-52 (104)
98 2o35_A Hypothetical protein DU 41.3 9.9 0.00034 27.9 1.3 11 243-253 43-53 (105)
99 3ql9_A Transcriptional regulat 38.5 22 0.00074 27.3 3.0 30 218-251 55-87 (129)
100 2puy_A PHD finger protein 21A; 38.4 8.3 0.00029 25.1 0.5 31 219-253 4-37 (60)
101 3zyq_A Hepatocyte growth facto 37.6 11 0.00036 31.6 1.1 33 219-251 163-198 (226)
102 3t7l_A Zinc finger FYVE domain 37.1 15 0.0005 26.2 1.7 32 220-251 20-54 (90)
103 1dvp_A HRS, hepatocyte growth 36.7 11 0.00037 31.3 1.1 32 219-250 160-194 (220)
104 2e6r_A Jumonji/ARID domain-con 35.7 9 0.00031 27.5 0.3 31 219-250 15-48 (92)
105 1wfk_A Zinc finger, FYVE domai 35.3 17 0.00059 25.7 1.8 31 220-250 9-42 (88)
106 1z2q_A LM5-1; membrane protein 35.3 15 0.0005 25.7 1.4 32 220-251 21-55 (84)
107 1fp0_A KAP-1 corepressor; PHD 35.2 7.9 0.00027 27.7 -0.0 33 218-254 23-58 (88)
108 1joc_A EEA1, early endosomal a 35.1 16 0.00054 27.7 1.7 31 220-250 69-102 (125)
109 2d8y_A Eplin protein; LIM doma 34.9 21 0.00072 24.8 2.3 30 220-249 15-44 (91)
110 1xwh_A Autoimmune regulator; P 34.8 8.9 0.00031 25.6 0.2 31 219-253 7-40 (66)
111 2cu8_A Cysteine-rich protein 2 34.3 16 0.00054 24.5 1.4 29 220-248 9-37 (76)
112 2jmo_A Parkin; IBR, E3 ligase, 34.2 4.2 0.00014 28.4 -1.6 21 238-260 55-75 (80)
113 1a7i_A QCRP2 (LIM1); LIM domai 33.8 13 0.00045 25.2 1.0 27 221-247 8-34 (81)
114 2lbm_A Transcriptional regulat 33.3 23 0.00078 27.6 2.4 32 218-253 61-95 (142)
115 2yw8_A RUN and FYVE domain-con 31.8 17 0.00058 25.2 1.3 31 220-250 19-52 (82)
116 2xb1_A Pygopus homolog 2, B-ce 28.1 25 0.00086 25.7 1.7 30 220-249 3-36 (105)
117 1wyh_A SLIM 2, skeletal muscle 28.0 30 0.001 22.6 2.0 28 221-248 6-34 (72)
118 1x4u_A Zinc finger, FYVE domai 27.3 22 0.00074 24.8 1.2 31 220-250 14-47 (84)
119 2kwj_A Zinc finger protein DPF 27.0 15 0.00051 27.2 0.3 32 221-252 2-42 (114)
120 3f6q_B LIM and senescent cell 26.9 27 0.00093 22.6 1.6 31 219-249 10-41 (72)
121 2dar_A PDZ and LIM domain prot 25.8 28 0.00097 24.1 1.6 29 219-248 24-52 (90)
122 3mjh_B Early endosome antigen 25.8 15 0.00053 21.4 0.1 14 220-233 5-18 (34)
123 4gne_A Histone-lysine N-methyl 25.5 34 0.0012 25.2 2.0 28 218-249 13-45 (107)
124 2d8z_A Four and A half LIM dom 25.4 40 0.0014 21.8 2.2 10 222-231 33-42 (70)
125 2dj7_A Actin-binding LIM prote 25.1 25 0.00085 24.0 1.1 30 219-248 14-43 (80)
126 1iml_A CRIP, cysteine rich int 24.5 24 0.00082 23.5 0.9 25 223-247 3-27 (76)
127 1y02_A CARP2, FYVE-ring finger 24.3 22 0.00074 26.9 0.7 32 220-251 19-53 (120)
128 2lv9_A Histone-lysine N-methyl 24.2 27 0.00093 25.1 1.3 27 222-250 30-59 (98)
129 3v43_A Histone acetyltransfera 23.8 13 0.00046 27.4 -0.5 33 222-254 63-98 (112)
130 1x4k_A Skeletal muscle LIM-pro 23.7 26 0.0009 22.9 1.0 26 222-247 7-33 (72)
131 1nyp_A Pinch protein; LIM doma 23.3 33 0.0011 22.0 1.5 26 221-247 6-31 (66)
132 2e6s_A E3 ubiquitin-protein li 23.2 18 0.0006 25.1 0.0 32 220-252 26-60 (77)
133 3mpx_A FYVE, rhogef and PH dom 22.5 18 0.00062 32.6 0.0 33 220-252 375-410 (434)
134 3asl_A E3 ubiquitin-protein li 22.2 19 0.00065 24.3 0.0 30 222-252 20-52 (70)
135 1x63_A Skeletal muscle LIM-pro 21.6 40 0.0014 22.6 1.7 29 220-248 15-44 (82)
136 1x62_A C-terminal LIM domain p 21.3 56 0.0019 21.8 2.4 29 219-248 14-42 (79)
137 1x64_A Alpha-actinin-2 associa 21.2 61 0.0021 22.2 2.6 29 219-248 24-52 (89)
138 1g47_A Pinch protein; LIM doma 21.1 24 0.00083 23.4 0.4 30 219-248 10-40 (77)
139 1wem_A Death associated transc 20.8 75 0.0026 21.3 2.9 27 221-249 17-46 (76)
140 1wd2_A Ariadne-1 protein homol 20.7 8.8 0.0003 25.3 -1.9 35 220-254 6-47 (60)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=102.47 Aligned_cols=43 Identities=37% Similarity=0.950 Sum_probs=38.4
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++. +.+||||.||..||++|++++.+||+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~ 82 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPV 82 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTT
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcC
Confidence 34678999999998754 67999999999999999999999996
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.37 E-value=2.1e-13 Score=91.40 Aligned_cols=42 Identities=36% Similarity=0.947 Sum_probs=37.7
Q ss_pred CCccccccccccccCC--EEec-cCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS--KKLP-CNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~--r~Lp-C~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+.+|+||++++.++. ..+| |||.||.+||++|++++.+||+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~ 48 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcC
Confidence 4678999999998753 7888 9999999999999999999996
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=94.36 Aligned_cols=43 Identities=30% Similarity=0.991 Sum_probs=38.0
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++. +.+||||.||..||++|++++.+||+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 56 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPI 56 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcC
Confidence 45679999999997543 78999999999999999999999996
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=98.58 Aligned_cols=42 Identities=33% Similarity=0.860 Sum_probs=35.6
Q ss_pred CCccccccccccccC-------------CEEec-cCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSA-------------SKKLP-CNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~-------------~r~Lp-C~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+++|+||++++.+. .+.+| |||.||.+||++|++++++||+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 69 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence 467899999998652 35666 9999999999999999999996
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=97.12 Aligned_cols=43 Identities=35% Similarity=1.042 Sum_probs=38.7
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++. +.+||||.||.+||++|++++.+||+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~ 65 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPI 65 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTT
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcC
Confidence 35679999999998764 68999999999999999999999996
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.5e-13 Score=94.14 Aligned_cols=43 Identities=30% Similarity=0.913 Sum_probs=38.2
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++. +.+||||.||.+||++|++++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~ 57 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCC
Confidence 34679999999998664 57799999999999999999999996
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=6.4e-13 Score=95.48 Aligned_cols=43 Identities=37% Similarity=1.091 Sum_probs=38.5
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..+.+|+||++++.++. +.+||||.||..||++|++++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 57 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV 57 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcC
Confidence 45679999999998654 67899999999999999999999996
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=8.6e-13 Score=101.00 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=37.3
Q ss_pred CCccccccccccccC-----------------CEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSA-----------------SKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~-----------------~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+++|+||++++.++ ...+||||.||.+||++||+++.+||+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 94 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSS
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcC
Confidence 568999999999854 256899999999999999999999996
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.1e-12 Score=87.69 Aligned_cols=42 Identities=29% Similarity=0.829 Sum_probs=37.3
Q ss_pred CCccccccccccccC---CEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSA---SKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~---~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+.+|+||++++.++ .+.+||||.||.+||++|++++.+||+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 48 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPL 48 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTT
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCC
Confidence 467899999999753 378999999999999999999999996
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.29 E-value=9.1e-13 Score=92.09 Aligned_cols=43 Identities=35% Similarity=0.818 Sum_probs=39.1
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++...+||||.||.+|+++|++++.+||+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~ 45 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPL 45 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcC
Confidence 3467999999999886689999999999999999999999996
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=90.07 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=38.0
Q ss_pred cCCccccccccccccCC------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.++. ..+||||.||.+||++|++++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 61 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTT
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCC
Confidence 45679999999998642 67899999999999999999999996
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=90.47 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=38.4
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
..+.+|+||++.+.++ ..+||||.||..||+.|+.++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCAL 54 (71)
T ss_dssp SSCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSS
T ss_pred CCCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcC
Confidence 4567999999999887 78999999999999999999999996
No 13
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.5e-12 Score=85.91 Aligned_cols=42 Identities=24% Similarity=0.609 Sum_probs=37.1
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhh---cCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ---RHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~---~~~tCP~ 260 (261)
+.+.+|+||++.++++ ..+||||.||..||++|++ .+.+||+
T Consensus 18 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCSSC-EECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred ccCCCCCcCCchhCCe-EEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 3467999999999987 7889999999999999998 4668996
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=2.6e-12 Score=90.31 Aligned_cols=42 Identities=31% Similarity=0.718 Sum_probs=37.4
Q ss_pred CCccccccccccccCC------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+.+|+||++++.++. ..+||||.||.+||++|++++.+||+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 56 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 56 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCC
Confidence 4678999999998641 68899999999999999999999996
No 15
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=84.65 Aligned_cols=42 Identities=26% Similarity=0.846 Sum_probs=36.6
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHh---hcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWF---QRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL---~~~~tCP~ 260 (261)
+.+..|+||++.++++ ..+||||.||.+||++|+ +++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP-VIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred ccCCCCccCCcccCcc-EeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 3467999999999987 679999999999999995 46789996
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=4.3e-12 Score=87.24 Aligned_cols=41 Identities=32% Similarity=0.707 Sum_probs=36.7
Q ss_pred CccccccccccccCC------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSAS------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+|+||++++.++. ..+||||.||.+|+++|++++.+||+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 49 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 49 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCC
Confidence 568999999998642 68899999999999999999999996
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.20 E-value=5.3e-12 Score=97.15 Aligned_cols=42 Identities=36% Similarity=0.828 Sum_probs=35.2
Q ss_pred CCccccccccccccCC-----------------EEeccCCcccHhhHHHHh-----hcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS-----------------KKLPCNHIFHTSCLRSWF-----QRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-----------------r~LpC~H~FH~~CL~~WL-----~~~~tCP~ 260 (261)
.+++|+||++++.++. +.+||||.||.+||++|+ +++.+||+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~ 87 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC
Confidence 3568999999997531 378899999999999999 45789996
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.16 E-value=3.2e-12 Score=99.36 Aligned_cols=42 Identities=33% Similarity=0.823 Sum_probs=1.1
Q ss_pred CCccccccccccccCC-----------------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSAS-----------------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-----------------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+++|+||++++.++. ..+||+|.||.+||++||+++.+||+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~ 105 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105 (117)
T ss_dssp CC---------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCC
Confidence 4689999999997521 23589999999999999999999996
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=86.20 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=37.4
Q ss_pred cCCccccccccccccCCEEe-ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+..|+||++.+.++ ..+ ||||.||..||+.|++.+.+||+
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (72)
T 2djb_A 13 TPYILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPK 55 (72)
T ss_dssp CGGGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred CCCCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence 3467999999999987 565 99999999999999999999996
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=87.90 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=38.1
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+..|+||++.+.++ ..+||||.||..||..|++.+.+||+
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~ 54 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP-VVTKCRHYFCESCALEHFRATPRCYI 54 (81)
T ss_dssp CCCSBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHHCSBCSS
T ss_pred CCCCCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHCCCcCCC
Confidence 3456899999999887 68999999999999999999999996
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.6e-11 Score=97.87 Aligned_cols=40 Identities=38% Similarity=0.902 Sum_probs=37.3
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+..|+||++.+.++ ..+||||.||..||..|+.++.+||+
T Consensus 53 ~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~ 92 (138)
T 4ayc_A 53 ELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKRKIECPI 92 (138)
T ss_dssp HSBCTTTCSBCSSE-EEETTSCEEEHHHHHHHTTTCSBCTT
T ss_pred cCCCcccCcccCCc-eECCCCCCccHHHHHHHHHcCCcCCC
Confidence 45899999999887 78999999999999999999999996
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=88.32 Aligned_cols=43 Identities=30% Similarity=0.826 Sum_probs=36.1
Q ss_pred cCCccccccccccccCC-EEeccC-----CcccHhhHHHHhhcC--CCCCC
Q psy8809 218 EADNVCIICREEMQSAS-KKLPCN-----HIFHTSCLRSWFQRH--QTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~-r~LpC~-----H~FH~~CL~~WL~~~--~tCP~ 260 (261)
+.++.|.||+++++++. ..+||+ |.||.+||++|+..+ .+||+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cpl 63 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCEL 63 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSS
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCC
Confidence 45679999999997543 678996 999999999999875 48996
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=87.10 Aligned_cols=41 Identities=34% Similarity=0.912 Sum_probs=37.4
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||++++.+ ..+||||.||..|+++|++++.+||+
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~ 53 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPI 53 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHH
T ss_pred CCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCC
Confidence 346799999999987 89999999999999999999999994
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.10 E-value=4.6e-11 Score=85.05 Aligned_cols=41 Identities=32% Similarity=0.861 Sum_probs=36.8
Q ss_pred CCccccccccccccCCEEec-cCCcccHhhHHHHhhcC--CCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQRH--QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL~~~--~tCP~ 260 (261)
.+..|+||++.+.++ ..+| |||.||..||+.|++++ .+||+
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 57 (74)
T 2yur_A 14 DELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPT 57 (74)
T ss_dssp GGGSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSS
T ss_pred CCCCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCC
Confidence 457999999999987 7899 99999999999999875 68996
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.2e-11 Score=86.58 Aligned_cols=43 Identities=28% Similarity=0.576 Sum_probs=37.2
Q ss_pred cCCccccccccccccC---CEEeccCCcccHhhHHHHhhcC---CCCCC
Q psy8809 218 EADNVCIICREEMQSA---SKKLPCNHIFHTSCLRSWFQRH---QTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~---~r~LpC~H~FH~~CL~~WL~~~---~tCP~ 260 (261)
+.+.+|+||++.+.++ .+.+||||.||..|++.|++++ .+||+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 61 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF 61 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence 4467999999999972 2789999999999999999876 78996
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7.9e-11 Score=83.14 Aligned_cols=42 Identities=24% Similarity=0.609 Sum_probs=36.7
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhh---cCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ---RHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~---~~~tCP~ 260 (261)
+.+..|+||++.+.++ ..+||||.||..||+.|++ .+.+||+
T Consensus 18 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (73)
T 2ysl_A 18 QEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (73)
T ss_dssp CCCCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred ccCCEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 3467999999999976 7889999999999999997 4668996
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7e-11 Score=82.07 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=36.1
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHh-hcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWF-QRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL-~~~~tCP~ 260 (261)
.+..|+||++.++++ ..+||||.||..||++|+ +.+.+||+
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTA 55 (66)
T ss_dssp CCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred cCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCC
Confidence 457899999999987 558999999999999999 45778996
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=1.2e-10 Score=83.37 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=37.4
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
.+..|+||++.|+++ ..+||||.||..||..|+++ +.+||+
T Consensus 7 ~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~ 48 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTCPK 48 (78)
T ss_dssp SSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred ccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHHCcCCCCC
Confidence 467999999999987 78899999999999999987 889996
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=82.72 Aligned_cols=43 Identities=26% Similarity=0.657 Sum_probs=37.3
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhcC--CCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH--QTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~--~tCP~ 260 (261)
+..++|+||++.+..+.+-..|+|.||..||+.||+++ ++||+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~ 57 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence 44579999999999875555799999999999999887 89996
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.00 E-value=2.7e-10 Score=82.32 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=37.5
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc------CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR------HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~------~~tCP~ 260 (261)
+.+..|+||++.+.++ ..+||||.||..|++.|+++ +..||+
T Consensus 17 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp CTTTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred ccCCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 3467999999999887 78999999999999999988 678996
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=82.81 Aligned_cols=42 Identities=29% Similarity=0.717 Sum_probs=37.4
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc------CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR------HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~------~~tCP~ 260 (261)
+.+.+|+||++.++++ ..+||||.||..|++.|+++ +..||+
T Consensus 17 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPV 64 (85)
T ss_dssp CCCCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTT
T ss_pred cCCCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence 3467999999999887 77899999999999999987 789996
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.98 E-value=8.2e-11 Score=84.26 Aligned_cols=42 Identities=24% Similarity=0.615 Sum_probs=37.0
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc-------CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-------HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-------~~tCP~ 260 (261)
+.+.+|+||++.+.++ ..+||||.||.+||+.|++. +.+||+
T Consensus 10 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~ 58 (79)
T 2egp_A 10 QEEVTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV 58 (79)
T ss_dssp CCCCEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS
T ss_pred ccCCCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence 3467999999999887 67999999999999999987 678996
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=86.89 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=36.9
Q ss_pred CCccccccccccccCCEEe-ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.++ ..+ ||||.||..||+.|++++.+||+
T Consensus 21 ~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 62 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSYKTQCPT 62 (99)
T ss_dssp HHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred CCCCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHCCCCCCC
Confidence 356899999999987 666 89999999999999999999996
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.4e-10 Score=90.68 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=37.9
Q ss_pred cCCccccccccccccCC------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+.+|+||+++++++. ..+||||.||.+||++|++++.+||+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 53 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 53 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCC
Confidence 34578999999998651 78999999999999999999999996
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.96 E-value=3e-10 Score=86.52 Aligned_cols=41 Identities=22% Similarity=0.703 Sum_probs=37.2
Q ss_pred CCccccccccccccCCEEe-ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.++ ..+ ||||.||..||..|++.+.+||+
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA-TTIIECLHSFCKTCIVRYLETSKYCPI 55 (108)
T ss_dssp GGTBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred CcCCCccCChHHhCc-CEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence 467999999999987 565 99999999999999999999996
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=86.91 Aligned_cols=41 Identities=29% Similarity=0.784 Sum_probs=36.6
Q ss_pred CCccccccccccccCCEE-eccCCcccHhhHHHHhhcC-CCCCC
Q psy8809 219 ADNVCIICREEMQSASKK-LPCNHIFHTSCLRSWFQRH-QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~-LpC~H~FH~~CL~~WL~~~-~tCP~ 260 (261)
.+..|+||++.+.++ .. ++|||.||..||+.|++.+ .+||+
T Consensus 21 ~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~~~~CP~ 63 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQRAQCPH 63 (100)
T ss_dssp HHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCCCccCCccccCc-cccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence 356899999999987 66 8999999999999999987 69996
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.94 E-value=5.2e-10 Score=82.56 Aligned_cols=42 Identities=31% Similarity=0.837 Sum_probs=36.8
Q ss_pred cCCccccccccccccCCEEec-cCCcccHhhHHHHhhcC--CCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQRH--QTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL~~~--~tCP~ 260 (261)
..+..|+||++.+.++ ..+| |||.|+..||..|+.++ .+||+
T Consensus 11 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 55 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPT 55 (92)
T ss_dssp CTTTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred CcCCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence 3467999999999987 8999 99999999999999754 58996
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.92 E-value=7.1e-10 Score=86.53 Aligned_cols=41 Identities=27% Similarity=0.593 Sum_probs=36.1
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCC-CCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~-tCP~ 260 (261)
.+..|+||++.+.++ ..+||||.||..||..|+..+. +||+
T Consensus 51 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 92 (124)
T 3fl2_A 51 ETFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFRAQVFSCPA 92 (124)
T ss_dssp HHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred cCCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHhHCcCCCCC
Confidence 356899999999987 7899999999999999998644 8996
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=6.1e-10 Score=87.02 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=37.7
Q ss_pred cCCccccccccccccCC------EEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSAS------KKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~------r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
+.+..|+||+++++++. ..++|||.||.+||++|++++.+||+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 118 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 118 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence 45679999999998631 67889999999999999999999996
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1.5e-09 Score=75.01 Aligned_cols=41 Identities=29% Similarity=0.642 Sum_probs=34.1
Q ss_pred Ccccccccc-ccccCC---EEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 220 DNVCIICRE-EMQSAS---KKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 220 ~~~C~ICle-e~~~~~---r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
+..|+||++ .+.++. ..+||||.||.+||++|+.+ +.+||+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCC
Confidence 468999999 787764 35799999999999999765 567996
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=4.9e-10 Score=86.26 Aligned_cols=42 Identities=31% Similarity=0.682 Sum_probs=37.2
Q ss_pred cCCccccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
..+..|+||++.+.++ ..+||||.||..||..|+++ +.+||+
T Consensus 13 ~~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (115)
T 3l11_A 13 LSECQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEKASLCCPF 55 (115)
T ss_dssp HHHHBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred CCCCCCccCCcccCce-eEcCCCCHHhHHHHHHHHhHCcCCCCC
Confidence 3457899999999887 78899999999999999977 678996
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1.1e-09 Score=84.35 Aligned_cols=41 Identities=22% Similarity=0.620 Sum_probs=36.9
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
.+..|+||++.+.++ ..+||||.||..||..|++. +.+||+
T Consensus 22 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 63 (116)
T 1rmd_A 22 KSISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPS 63 (116)
T ss_dssp HHTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCC
Confidence 457999999999887 67999999999999999987 789996
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.3e-09 Score=83.08 Aligned_cols=40 Identities=28% Similarity=0.647 Sum_probs=35.4
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCC---CCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ---TCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~---tCP~ 260 (261)
+..|+||++.+.++ ..+||||.||..||..|++.+. +||+
T Consensus 21 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 63 (112)
T 1jm7_A 21 ILECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63 (112)
T ss_dssp HTSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred CCCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence 45899999999887 6789999999999999998754 8996
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.80 E-value=1.6e-09 Score=88.60 Aligned_cols=40 Identities=25% Similarity=0.693 Sum_probs=35.6
Q ss_pred CccccccccccccCCEEe-ccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 220 DNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
+..|+||++.+.++ ..+ ||||.||..||+.|+.. +.+||+
T Consensus 54 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 95 (165)
T 2ckl_B 54 ELMCPICLDMLKNT-MTTKECLHRFCADCIITALRSGNKECPT 95 (165)
T ss_dssp HHBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred CCCCcccChHhhCc-CEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence 45999999999987 555 99999999999999987 788996
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.79 E-value=3.7e-09 Score=77.33 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++-|+++ ..+||||.|...||..|+.++.+||+
T Consensus 13 ~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~ 53 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLNSPTDPF 53 (85)
T ss_dssp TTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred hheECcccCchhcCC-eECCCCCEECHHHHHHHHhcCCCCCC
Confidence 357999999999998 78999999999999999999999996
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.78 E-value=2.2e-09 Score=83.09 Aligned_cols=41 Identities=27% Similarity=0.668 Sum_probs=36.6
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCC-CCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~-tCP~ 260 (261)
.+..|+||++.+.++ ..+||||.||..||..|++++. +||+
T Consensus 17 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (118)
T 3hct_A 17 SKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPV 58 (118)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCC
Confidence 456999999999987 7899999999999999998765 9996
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.74 E-value=4e-09 Score=85.30 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=36.4
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCC-CCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~-tCP~ 260 (261)
.+..|+||++.+.++ ..+||||.||..||..|+..+. +||+
T Consensus 77 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~ 118 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKAQVFSCPA 118 (150)
T ss_dssp HHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred cCCEeecCChhhcCC-EEcCCCCchhHHHHHHHHHhCCCcCCC
Confidence 356899999999987 7799999999999999998764 8996
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.68 E-value=7.8e-09 Score=95.33 Aligned_cols=40 Identities=43% Similarity=0.881 Sum_probs=36.5
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhh-cCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~-~~~tCP~ 260 (261)
+.+|+||++.+.++ ..+||||.||..|+..|++ ++.+||+
T Consensus 332 ~~~C~ICle~~~~p-v~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 332 FQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp SSBCTTTSSSBCCE-EEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CCCCCccCcCCCCe-EEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 36999999999876 8899999999999999998 6899996
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.65 E-value=1e-08 Score=77.29 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++-|+++ ..+||||.|...||..|+..+.+||+
T Consensus 28 ~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~ 68 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLNSPTDPF 68 (100)
T ss_dssp TTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTSCSBCSS
T ss_pred HhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHcCCCCCC
Confidence 356999999999998 78999999999999999999999996
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.61 E-value=1.5e-08 Score=70.04 Aligned_cols=41 Identities=22% Similarity=0.548 Sum_probs=36.1
Q ss_pred CCccccccccccccCCEEe--ccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKL--PCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L--pC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
.+.+|.||+++..+. ..+ ||||. |..+|++.|.+++..||+
T Consensus 7 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPi 50 (64)
T 2vje_A 7 AIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPV 50 (64)
T ss_dssp GGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHTTCCCTT
T ss_pred CcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHcCCcCCC
Confidence 467899999998876 455 99999 799999999999999996
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.60 E-value=2e-08 Score=75.49 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCccccccccccccCCEEeccC-CcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCN-HIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~-H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++-|+++ ..+||| |.|...||..|+.++.+||+
T Consensus 21 ~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~ 62 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLSDQTDPF 62 (98)
T ss_dssp TTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred HhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHhCCCCCC
Confidence 356999999999998 789999 99999999999999999996
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.60 E-value=1.7e-08 Score=69.64 Aligned_cols=42 Identities=17% Similarity=0.432 Sum_probs=36.8
Q ss_pred cCCccccccccccccCCEEe--ccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKL--PCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~L--pC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+.+..|.||++...+. ..+ ||||. |+.+|+..|.+++..||+
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPi 49 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPI 49 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTT
T ss_pred CcCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCCC
Confidence 4567999999998776 456 99998 999999999998899996
No 53
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.6e-08 Score=75.31 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=35.9
Q ss_pred CCccccccccccccCCEEec-cCCcccHhhHHHHhhcC------CCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQRH------QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp-C~H~FH~~CL~~WL~~~------~tCP~ 260 (261)
.+..|+||++.|+++ ..+| |||.|.+.||..|+.++ .+||+
T Consensus 6 ~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~ 53 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQ 53 (94)
T ss_dssp SCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCS
T ss_pred cEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCc
Confidence 356899999999998 7786 99999999999999764 48996
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.59 E-value=1.1e-08 Score=81.87 Aligned_cols=41 Identities=24% Similarity=0.612 Sum_probs=36.3
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCC-CCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~-tCP~ 260 (261)
.+..|+||++.+.++ ..++|||.||..||..|++++. +||+
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~ 71 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAA 71 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHH
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCC
Confidence 456999999999988 7799999999999999998754 8984
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=6.7e-09 Score=69.82 Aligned_cols=38 Identities=32% Similarity=0.656 Sum_probs=33.2
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.++ +.+||||.||..|++.| +.+||+
T Consensus 5 ~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~---~~~CP~ 42 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP-KLLPCLHTLCSGCLEAS---GMQCPI 42 (56)
T ss_dssp CCSSCSSSCSSCBCC-SCSTTSCCSBTTTCSSS---SSSCSS
T ss_pred cCCCceEeCCccCCe-EEcCCCCcccHHHHccC---CCCCCc
Confidence 456899999999987 88999999999999884 667885
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=1.3e-08 Score=78.62 Aligned_cols=39 Identities=26% Similarity=0.609 Sum_probs=34.7
Q ss_pred CCccccccccccccCCEEe-ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.++ ..+ ||||.||..||..|++ ..||+
T Consensus 21 ~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~--~~CP~ 60 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIG--TGCPV 60 (117)
T ss_dssp HTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTT--TBCSS
T ss_pred hCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhc--CCCcC
Confidence 356899999999987 667 9999999999999998 78986
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.47 E-value=7.1e-08 Score=69.42 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=33.9
Q ss_pred cCCccccccccccccC-CEEec--cCCcccHhhHHHHhhc-CCCCCC
Q psy8809 218 EADNVCIICREEMQSA-SKKLP--CNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~-~r~Lp--C~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
+.+.+|+||+|.++.+ .+.+| |||.|+..|+..+.+. +..||+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~ 55 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPA 55 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTT
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCC
Confidence 3467999999999743 24555 9999999999999854 678995
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=2.6e-07 Score=80.68 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
.+..|+||++-|+++ ..+||||.|+..||..|+.+ +.+||+
T Consensus 207 ~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~ 248 (281)
T 2c2l_A 207 DYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNPV 248 (281)
T ss_dssp STTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred cccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCCCCCcC
Confidence 456999999999998 78999999999999999987 455996
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.41 E-value=5e-08 Score=69.28 Aligned_cols=37 Identities=24% Similarity=0.706 Sum_probs=32.7
Q ss_pred CCccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.+. ..+||||. |+..|+..| ..||+
T Consensus 23 ~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----~~CP~ 60 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV----DKCPM 60 (74)
T ss_dssp HHTBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC----SBCTT
T ss_pred cCCCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC----ccCCC
Confidence 356899999999876 78899999 999999999 78885
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.37 E-value=1.1e-07 Score=77.81 Aligned_cols=41 Identities=27% Similarity=0.686 Sum_probs=36.3
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcC-CCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~-~tCP~ 260 (261)
.+..|+||++.+.++ ..+||||.|+..||.+|++++ .+||+
T Consensus 17 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (170)
T 3hcs_A 17 SKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPV 58 (170)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 456999999999988 779999999999999999764 49996
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=1.9e-07 Score=63.81 Aligned_cols=42 Identities=33% Similarity=0.752 Sum_probs=33.4
Q ss_pred cCCccccccccccccCCEEeccC--C---cccHhhHHHHhhc--CCCCCC
Q psy8809 218 EADNVCIICREEMQSASKKLPCN--H---IFHTSCLRSWFQR--HQTCPT 260 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~LpC~--H---~FH~~CL~~WL~~--~~tCP~ 260 (261)
+.++.|.||+++-.++ ..+||+ | .||.+||+.|+.. +.+||+
T Consensus 4 ~~~~~CrIC~~~~~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~ 52 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQI 52 (60)
T ss_dssp CSCCEETTTTEECSCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred CCCCEeEEeecCCCCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCC
Confidence 3567999999985443 578965 4 9999999999964 678986
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.32 E-value=2.1e-07 Score=84.09 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=29.6
Q ss_pred cCCccccccccccccCC----E---EeccCCcccHhhHHHHhhc
Q psy8809 218 EADNVCIICREEMQSAS----K---KLPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~----r---~LpC~H~FH~~CL~~WL~~ 254 (261)
+...+|+||++.+.++. + ..+|||.||..||.+||++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs 349 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKT 349 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHh
Confidence 35569999999998721 1 2359999999999999976
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.30 E-value=1.9e-07 Score=63.92 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=36.0
Q ss_pred CccccccccccccCCEEe-ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKL-PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~L-pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
...|+||++.|+++ ..+ +|||.|-+.||.+|++++.+||+
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~~~cP~ 43 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDTGNDPI 43 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHHSBCTT
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhCCCCcC
Confidence 35799999999988 677 89999999999999999889997
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.26 E-value=1.2e-06 Score=72.76 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=36.4
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcC-CCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~-~tCP~ 260 (261)
.+..|+||++-|+++ ..+||||.|...||..|+..+ .+||+
T Consensus 105 ~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~ 146 (179)
T 2f42_A 105 DYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFDPV 146 (179)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred HhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhCCCCCCC
Confidence 356999999999998 788999999999999999874 57996
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=8e-07 Score=62.08 Aligned_cols=41 Identities=27% Similarity=0.702 Sum_probs=33.8
Q ss_pred ccccCCccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 215 ELTEADNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 215 ~l~~~~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
...+.+..|.||++...+. ..+||||. |+..|+.. .+.||+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~----~~~CP~ 51 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY----FQQCPM 51 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC-EETTTTBCCSCTTHHHH----CSSCTT
T ss_pred ccCCCCCCCCCcCcCCCCE-EEECCCChhhhHHHHhc----CCCCCC
Confidence 3334567999999998765 78999999 99999984 688986
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.19 E-value=4.7e-07 Score=66.98 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=29.3
Q ss_pred CccccccccccccCC-EE-eccCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQSAS-KK-LPCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~~~~-r~-LpC~H~FH~~CL~~WL~~ 254 (261)
..+|+||++++..+. .. .||||.|+.+|++.+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 568999999998765 23 379999999999999964
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=5e-07 Score=64.08 Aligned_cols=36 Identities=25% Similarity=0.731 Sum_probs=31.0
Q ss_pred CccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+.+|+||++.+.+. ..+||||. |+..|++. ...||+
T Consensus 25 ~~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~----~~~CP~ 61 (75)
T 2ecg_A 25 EKLCKICMDRNIAI-VFVPCGHLVTCKQCAEA----VDKCPM 61 (75)
T ss_dssp HHSCSSSCSSCCCB-CCSSSCCCCBCHHHHHH----CSBCTT
T ss_pred CCCCCcCCCCCCCE-EEecCCCHHHHHHHhhC----CCCCcc
Confidence 46899999999876 67899999 99999964 478986
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.05 E-value=3.7e-06 Score=73.42 Aligned_cols=42 Identities=21% Similarity=0.535 Sum_probs=35.9
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHHHHhhcC--CCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH--QTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~--~tCP~ 260 (261)
.+-.|+||++.|+++++...|||.|.+.||..|++.+ .+||+
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 3458999999999996556899999999999999864 47995
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.96 E-value=1.4e-06 Score=62.55 Aligned_cols=36 Identities=33% Similarity=0.775 Sum_probs=31.5
Q ss_pred CccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
+..|.||++...+. ..+||||. |+..|+..| ..||+
T Consensus 18 ~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~----~~CP~ 54 (79)
T 2yho_A 18 AMLCMVCCEEEINS-TFCPCGHTVCCESCAAQL----QSCPV 54 (79)
T ss_dssp HTBCTTTSSSBCCE-EEETTCBCCBCHHHHTTC----SBCTT
T ss_pred CCEeEEeCcccCcE-EEECCCCHHHHHHHHHhc----CcCCC
Confidence 46899999998876 78999999 999999987 48885
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.75 E-value=5.4e-06 Score=75.51 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=32.8
Q ss_pred CCccccccccccccCCEEeccCCc-ccHhhHHHHhhcCCCCCC
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHI-FHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~-FH~~CL~~WL~~~~tCP~ 260 (261)
.+..|+||++.+.++ ..+||||. ||..|+..| ..||+
T Consensus 294 ~~~~C~IC~~~~~~~-v~lpCgH~~fC~~C~~~~----~~CP~ 331 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV-VFIPCGHLVVCQECAPSL----RKCPI 331 (345)
T ss_dssp TTCBCTTTSSSBCCE-EEETTCCEEECTTTGGGC----SBCTT
T ss_pred CCCCCCccCCcCCce-EEcCCCChhHhHHHHhcC----CcCCC
Confidence 356899999999877 78899999 999999998 78886
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.45 E-value=4.8e-05 Score=65.80 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=34.3
Q ss_pred CccccccccccccCCEEeccCCcccHhhHHHHhhcCC--CCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ--TCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~~~--tCP~ 260 (261)
-..|.||.+-...+.+.-.|+|.||..|++.|++.++ +||.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~ 222 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 222 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTT
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCC
Confidence 4689999999998744434999999999999998754 8994
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.31 E-value=0.00012 Score=54.46 Aligned_cols=39 Identities=23% Similarity=0.651 Sum_probs=33.4
Q ss_pred cccccccccccCCEEeccCCcccHhhHHHHhhc-CCCCCC
Q psy8809 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260 (261)
Q Consensus 222 ~C~IClee~~~~~r~LpC~H~FH~~CL~~WL~~-~~tCP~ 260 (261)
-|.+|--.+..-.|.+||+|+|+.+|+..|-++ .++||.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~ 42 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPG 42 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcC
Confidence 488888888766699999999999999999855 788985
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.33 E-value=0.015 Score=42.79 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.8
Q ss_pred Ccccccccccc-ccCCE-EeccCCcccHhhHHH-Hh
Q psy8809 220 DNVCIICREEM-QSASK-KLPCNHIFHTSCLRS-WF 252 (261)
Q Consensus 220 ~~~C~IClee~-~~~~r-~LpC~H~FH~~CL~~-WL 252 (261)
+-.|.||.+++ .++.+ -++|+|.|...|++. |-
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46899999874 44432 399999999999998 53
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.24 E-value=0.081 Score=37.90 Aligned_cols=32 Identities=31% Similarity=0.815 Sum_probs=24.7
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHH
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSW 251 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~W 251 (261)
..|+.|.||-.- ..+ .++| |+-+||.+|+++=
T Consensus 13 ~~D~~C~VC~~~-t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-ccc-ceeccccccccccHhhcccc
Confidence 468899999743 222 5777 7899999999985
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.12 E-value=0.51 Score=47.96 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=36.6
Q ss_pred CccccccccccccCCEEeccC-CcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCN-HIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~-H~FH~~CL~~WL~~~~tCP~ 260 (261)
+-.|+|-.+-|+++ ..+|-| +.|-+.+|..|+.++.+||.
T Consensus 891 ~F~cPIs~~lM~DP-VilpsG~~TydR~~I~~wl~~~~tdP~ 931 (968)
T 3m62_A 891 EFLDPLMYTIMKDP-VILPASKMNIDRSTIKAHLLSDSTDPF 931 (968)
T ss_dssp GGBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred HhCCcchhhHHhCC-eEcCCCCEEECHHHHHHHHhcCCCCCC
Confidence 45899999999998 789997 58999999999999999996
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.71 E-value=0.46 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.1
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhhcC
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQRH 255 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~~~ 255 (261)
..+..|.||.+. + ..|- |...||..|+++.+...
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~ 46 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSR 46 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcC
Confidence 345689999854 3 2333 78999999999888653
No 77
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=73.56 E-value=1.4 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=23.2
Q ss_pred CccccccccccccCCEEeccCCcccHhh
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSC 247 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~C 247 (261)
.+.|+.|-...-..++...=|..||+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEEECCeEecccC
Confidence 4689999998877666666789999999
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=72.66 E-value=1.5 Score=31.99 Aligned_cols=38 Identities=26% Similarity=0.589 Sum_probs=31.8
Q ss_pred CccccccccccccCCEEeccC-CcccHhhHHHHhhcCCCCCC
Q psy8809 220 DNVCIICREEMQSASKKLPCN-HIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~-H~FH~~CL~~WL~~~~tCP~ 260 (261)
-..|-.||-+.+ ..+.|+ |..+.+||..-|.+.+.||+
T Consensus 28 ~~nCKsCWf~~k---~LV~C~dHYLCl~CLtlmL~~SdrCpI 66 (99)
T 2ko5_A 28 PQFCKSCWFENK---GLVECNNHYLCLNCLTLLLSVSNRCPI 66 (99)
T ss_dssp CCCCCSSCSCCS---SEEECSSCEEEHHHHHHTCSSSSEETT
T ss_pred cccChhhccccC---CeeeecchhhHHHHHHHHHhhccCCcc
Confidence 358999997754 366675 99999999999999999986
No 79
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.20 E-value=2.6 Score=28.08 Aligned_cols=33 Identities=30% Similarity=0.703 Sum_probs=23.7
Q ss_pred CCccccccccccccC-CEEec---cCCcccHhhHHHH
Q psy8809 219 ADNVCIICREEMQSA-SKKLP---CNHIFHTSCLRSW 251 (261)
Q Consensus 219 ~~~~C~IClee~~~~-~r~Lp---C~H~FH~~CL~~W 251 (261)
.+..|.+|.+...++ ...+- |.-.||..|+.+=
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~ 41 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPH 41 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCc
Confidence 467999999875432 24444 7889999998763
No 80
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.63 E-value=3.2 Score=32.15 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=21.8
Q ss_pred cCCccccccccccc--cCC--EEeccCCcccHhh
Q psy8809 218 EADNVCIICREEMQ--SAS--KKLPCNHIFHTSC 247 (261)
Q Consensus 218 ~~~~~C~IClee~~--~~~--r~LpC~H~FH~~C 247 (261)
.++..|++|...+. .+. ....|+|.++..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 35689999999994 221 2344889999888
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=54.53 E-value=5.7 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.661 Sum_probs=23.7
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
..+..|.+|.+. + ..+- |...||..|++.=+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~ 43 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDME 43 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCC
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCC
Confidence 356799999973 3 3444 778999999997554
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.13 E-value=3.9 Score=27.94 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHHHh
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL 252 (261)
.+..|.+|..... +...+- |.--||..|+..-.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCc
Confidence 3457999988754 323444 77899999997644
No 83
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.17 E-value=13 Score=26.44 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=22.9
Q ss_pred cCCccccccccccc-cCCEEec---cCCcccHhhHHH
Q psy8809 218 EADNVCIICREEMQ-SASKKLP---CNHIFHTSCLRS 250 (261)
Q Consensus 218 ~~~~~C~IClee~~-~~~r~Lp---C~H~FH~~CL~~ 250 (261)
+.+..|.||.+.-. ++...+- |.-.||..|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 35679999997632 2224444 778999999974
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.95 E-value=5.6 Score=26.22 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHH
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRS 250 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~ 250 (261)
.+..|++|...+.++...+. |..=||..|+.-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 45689999998864433444 778899999754
No 85
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.25 E-value=2.4 Score=30.26 Aligned_cols=35 Identities=20% Similarity=0.703 Sum_probs=24.6
Q ss_pred cCCccccccccccccC-CEEec---cCCcccHhhHHHHh
Q psy8809 218 EADNVCIICREEMQSA-SKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 218 ~~~~~C~IClee~~~~-~r~Lp---C~H~FH~~CL~~WL 252 (261)
+.+..|.+|.+.-.++ ...|- |...||..|+++=+
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 52 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV 52 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcc
Confidence 3467999999864321 24444 78999999998644
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=50.01 E-value=4 Score=25.66 Aligned_cols=30 Identities=37% Similarity=0.801 Sum_probs=20.5
Q ss_pred cccccccccccCCEEec---cCCcccHhhHHHHh
Q psy8809 222 VCIICREEMQSASKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL 252 (261)
.|.||.+.=.++ ..+- |...||..|+++=+
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l 34 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPAL 34 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCc
Confidence 588888653333 3333 78999999997644
No 87
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.94 E-value=8.1 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=24.8
Q ss_pred CCccccccccccccCCEEecc-CCcccHhhHHHH
Q psy8809 219 ADNVCIICREEMQSASKKLPC-NHIFHTSCLRSW 251 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC-~H~FH~~CL~~W 251 (261)
...-|.||.|+ ...|.+.| |-+|+..|.++=
T Consensus 7 e~pWC~ICneD--AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED--ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC--CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC--CeEEecCCCCceehHHHHHHH
Confidence 35689999999 33478889 899999998764
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=46.89 E-value=4.8 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.608 Sum_probs=23.0
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
..+..|.+|.+. + ..+- |...||..|+.+=+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~ 41 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLP 41 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCS
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcC
Confidence 456789999863 2 2333 789999999986443
No 89
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.18 E-value=26 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=22.6
Q ss_pred CCcccccccccccc----CCEEeccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQS----ASKKLPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~----~~r~LpC~H~FH~~CL 248 (261)
.+..|++|...|.- +.....|+|.++..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46799999999762 2134449999999995
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.06 E-value=4 Score=26.34 Aligned_cols=32 Identities=25% Similarity=0.789 Sum_probs=23.4
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
..+..|.+|.+. + ..+- |...||..|+++=+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~ 41 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLK 41 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcC
Confidence 456789999974 3 2333 789999999986544
No 91
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.04 E-value=11 Score=25.85 Aligned_cols=31 Identities=32% Similarity=0.749 Sum_probs=23.0
Q ss_pred CCccccccccccccCCEEeccCCcccHhhHH
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCLR 249 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL~ 249 (261)
....|+-|-+.+.+..+...-+..||.+|.+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~ 44 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFR 44 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCB
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCE
Confidence 4568999999886554555578889998853
No 92
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.95 E-value=9.5 Score=25.97 Aligned_cols=31 Identities=19% Similarity=0.590 Sum_probs=23.4
Q ss_pred CccccccccccccCCEE---eccCCcccHhhHHH
Q psy8809 220 DNVCIICREEMQSASKK---LPCNHIFHTSCLRS 250 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~ 250 (261)
++.|.+|...|.--.|+ -.||.+|..+|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 45899999999854333 23999999999653
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.15 E-value=15 Score=25.00 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=23.1
Q ss_pred cCCccccccccccc-cCCEEec---cCCcccHhhHHH
Q psy8809 218 EADNVCIICREEMQ-SASKKLP---CNHIFHTSCLRS 250 (261)
Q Consensus 218 ~~~~~C~IClee~~-~~~r~Lp---C~H~FH~~CL~~ 250 (261)
..++.|.||.+.-. ++...+- |.-.||..|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 35679999987642 2224444 778999999974
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.29 E-value=5.9 Score=29.20 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=25.1
Q ss_pred cCCccccccccccccCC--EEeccCCcccHhhHHHHhh
Q psy8809 218 EADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQ 253 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~--r~LpC~H~FH~~CL~~WL~ 253 (261)
..++.|.+|.+.=+.+. .--.|+..||..|++....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 35789999987633211 1223889999999998764
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.52 E-value=13 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=22.2
Q ss_pred CCccccccccccccCCEEe----ccCCcccHhhHH
Q psy8809 219 ADNVCIICREEMQSASKKL----PCNHIFHTSCLR 249 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L----pC~H~FH~~CL~ 249 (261)
....|.+|...+.++.... .|.-=||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4568999999987654333 477889999974
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=41.29 E-value=28 Score=24.52 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCccccccccccccCC-EEec--cCCcccHhhHHHHhhcC
Q psy8809 219 ADNVCIICREEMQSAS-KKLP--CNHIFHTSCLRSWFQRH 255 (261)
Q Consensus 219 ~~~~C~IClee~~~~~-r~Lp--C~H~FH~~CL~~WL~~~ 255 (261)
..-.|.+|.|..++.- .+-| =+|.|+..|-+.-++++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 4568999999998762 3434 36999999999999763
No 97
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=41.28 E-value=9.9 Score=27.83 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=9.9
Q ss_pred ccHhhHHHHhh
Q psy8809 243 FHTSCLRSWFQ 253 (261)
Q Consensus 243 FH~~CL~~WL~ 253 (261)
||.+||..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 98
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.27 E-value=9.9 Score=27.88 Aligned_cols=11 Identities=36% Similarity=1.313 Sum_probs=9.9
Q ss_pred ccHhhHHHHhh
Q psy8809 243 FHTSCLRSWFQ 253 (261)
Q Consensus 243 FH~~CL~~WL~ 253 (261)
||.+||..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.45 E-value=22 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=22.1
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHH
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSW 251 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~W 251 (261)
..++.|.+|.+- + ..+- |-..||..||++=
T Consensus 55 g~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 55 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp SCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHH
T ss_pred CCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCC
Confidence 356789999964 3 2222 6799999999975
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.41 E-value=8.3 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.823 Sum_probs=22.6
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
.++.|.+|.+. + ..+. |.-.||..|+++=+.
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~ 37 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLK 37 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCS
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcC
Confidence 46789999974 3 2333 789999999986443
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.60 E-value=11 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.616 Sum_probs=24.7
Q ss_pred CCccccccccccccCCEE---eccCCcccHhhHHHH
Q psy8809 219 ADNVCIICREEMQSASKK---LPCNHIFHTSCLRSW 251 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~W 251 (261)
.++.|.+|...|.--.|+ -.||++|+..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356999999999854333 349999999996543
No 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.13 E-value=15 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.510 Sum_probs=24.3
Q ss_pred CccccccccccccCCEE---eccCCcccHhhHHHH
Q psy8809 220 DNVCIICREEMQSASKK---LPCNHIFHTSCLRSW 251 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~W 251 (261)
...|.+|...|.--.|+ -.||++|+..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45899999999854333 349999999997654
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.66 E-value=11 Score=31.29 Aligned_cols=32 Identities=28% Similarity=0.647 Sum_probs=24.2
Q ss_pred CCccccccccccccCCEE---eccCCcccHhhHHH
Q psy8809 219 ADNVCIICREEMQSASKK---LPCNHIFHTSCLRS 250 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~ 250 (261)
.+..|.+|...|.--.|+ -.||++|+..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 357999999999854333 34999999999654
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.69 E-value=9 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=22.2
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHH
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRS 250 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~ 250 (261)
.+..|.||.+.=.++ ..+- |...||..|+++
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSS
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCC
Confidence 456899999864332 3333 788999999974
No 105
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.28 E-value=17 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.6
Q ss_pred CccccccccccccCCEEe---ccCCcccHhhHHH
Q psy8809 220 DNVCIICREEMQSASKKL---PCNHIFHTSCLRS 250 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~L---pC~H~FH~~CL~~ 250 (261)
...|.+|...|.--.|+- .||++|+..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 458999999998544443 3899999999654
No 106
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.26 E-value=15 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.409 Sum_probs=24.3
Q ss_pred CccccccccccccCCEEe---ccCCcccHhhHHHH
Q psy8809 220 DNVCIICREEMQSASKKL---PCNHIFHTSCLRSW 251 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~L---pC~H~FH~~CL~~W 251 (261)
...|.+|...|.--.|+- .||++|+.+|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 458999999998544433 39999999996543
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=35.19 E-value=7.9 Score=27.74 Aligned_cols=33 Identities=21% Similarity=0.640 Sum_probs=23.8
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhhc
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQR 254 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~~ 254 (261)
..++.|.+|.+. + ..|- |.-.||..|+++=+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~ 58 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQD 58 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCC
Confidence 457799999964 3 3444 6788999999775543
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.08 E-value=16 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.598 Sum_probs=23.5
Q ss_pred CccccccccccccCCEE---eccCCcccHhhHHH
Q psy8809 220 DNVCIICREEMQSASKK---LPCNHIFHTSCLRS 250 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~ 250 (261)
...|.+|...|.--.|+ -.||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35899999999854333 33999999999654
No 109
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.88 E-value=21 Score=24.80 Aligned_cols=30 Identities=27% Similarity=0.748 Sum_probs=22.2
Q ss_pred CccccccccccccCCEEeccCCcccHhhHH
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCLR 249 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL~ 249 (261)
...|+-|-+.+.++.....-+..||.+|.+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~ 44 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFR 44 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCB
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCe
Confidence 468999988887655556678888888843
No 110
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.78 E-value=8.9 Score=25.56 Aligned_cols=31 Identities=26% Similarity=0.766 Sum_probs=22.4
Q ss_pred CCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 219 ADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
.++.|.||.+. + ..+- |.-.||..|+.+=+.
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~ 40 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLR 40 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCS
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcC
Confidence 56799999964 3 2333 788999999986443
No 111
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.33 E-value=16 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=18.3
Q ss_pred CccccccccccccCCEEeccCCcccHhhH
Q psy8809 220 DNVCIICREEMQSASKKLPCNHIFHTSCL 248 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~LpC~H~FH~~CL 248 (261)
...|+-|-+...++.....-+..||.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF 37 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL 37 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC
Confidence 35677777777644444456667777663
No 112
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.23 E-value=4.2 Score=28.40 Aligned_cols=21 Identities=19% Similarity=0.684 Sum_probs=17.4
Q ss_pred ccCCcccHhhHHHHhhcCCCCCC
Q psy8809 238 PCNHIFHTSCLRSWFQRHQTCPT 260 (261)
Q Consensus 238 pC~H~FH~~CL~~WL~~~~tCP~ 260 (261)
.|||.|+..|-..|-. .+|..
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSSS
T ss_pred CCCCeeccccCccccC--Ccccc
Confidence 4899999999999977 67753
No 113
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.77 E-value=13 Score=25.20 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=14.9
Q ss_pred ccccccccccccCCEEeccCCcccHhh
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSC 247 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~C 247 (261)
+.|+.|.+...++.....-+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSS
T ss_pred CcCcCcCccccCceeEEeCCccccccc
Confidence 456666666654434444555666655
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.28 E-value=23 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=24.1
Q ss_pred cCCccccccccccccCCEEec---cCCcccHhhHHHHhh
Q psy8809 218 EADNVCIICREEMQSASKKLP---CNHIFHTSCLRSWFQ 253 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~ 253 (261)
..++.|.+|.+- | ..+- |...||..||++=+.
T Consensus 61 g~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~ 95 (142)
T 2lbm_A 61 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLG 95 (142)
T ss_dssp SCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTC
T ss_pred CCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCC
Confidence 357899999975 3 2333 789999999997663
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.80 E-value=17 Score=25.24 Aligned_cols=31 Identities=29% Similarity=0.704 Sum_probs=23.4
Q ss_pred CccccccccccccCCEE---eccCCcccHhhHHH
Q psy8809 220 DNVCIICREEMQSASKK---LPCNHIFHTSCLRS 250 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~ 250 (261)
...|.+|...|.--.|+ -.||.+|+..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35799999999854333 33999999999654
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.08 E-value=25 Score=25.68 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=21.5
Q ss_pred CccccccccccccCCEEec----cCCcccHhhHH
Q psy8809 220 DNVCIICREEMQSASKKLP----CNHIFHTSCLR 249 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~Lp----C~H~FH~~CL~ 249 (261)
...|.||...+.++...+. |.-=||..|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 3579999999865444443 56779999974
No 117
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.01 E-value=30 Score=22.57 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=14.6
Q ss_pred ccccccccccccCC-EEeccCCcccHhhH
Q psy8809 221 NVCIICREEMQSAS-KKLPCNHIFHTSCL 248 (261)
Q Consensus 221 ~~C~IClee~~~~~-r~LpC~H~FH~~CL 248 (261)
..|+-|.+...++. ....-|..||.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 34 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF 34 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC
T ss_pred CCCccCCCccccCccEEEECccccCcccC
Confidence 45666666665422 23335566666653
No 118
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.27 E-value=22 Score=24.80 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=23.3
Q ss_pred CccccccccccccCCEE---eccCCcccHhhHHH
Q psy8809 220 DNVCIICREEMQSASKK---LPCNHIFHTSCLRS 250 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~---LpC~H~FH~~CL~~ 250 (261)
...|.+|...|.--.|+ -.||.+|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 35899999999754333 33999999999654
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.02 E-value=15 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=21.6
Q ss_pred ccccccccccc----cC--CEEe---ccCCcccHhhHHHHh
Q psy8809 221 NVCIICREEMQ----SA--SKKL---PCNHIFHTSCLRSWF 252 (261)
Q Consensus 221 ~~C~IClee~~----~~--~r~L---pC~H~FH~~CL~~WL 252 (261)
+.|.+|++.=. .+ ...+ .|+..||..|++...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 57999987642 11 1223 389999999998653
No 120
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=26.87 E-value=27 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=22.2
Q ss_pred CCccccccccccccCCEEe-ccCCcccHhhHH
Q psy8809 219 ADNVCIICREEMQSASKKL-PCNHIFHTSCLR 249 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~L-pC~H~FH~~CL~ 249 (261)
....|+-|.+....+++.+ .=|..||.+|.+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~ 41 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFV 41 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSS
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCc
Confidence 3468999999888655544 467788888853
No 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=28 Score=24.05 Aligned_cols=29 Identities=10% Similarity=0.326 Sum_probs=21.0
Q ss_pred CCccccccccccccCCEEeccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL 248 (261)
....|+-|-+.+.+. ....-|..||.+|.
T Consensus 24 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF 52 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP-FLVALGKSWHPEEF 52 (90)
T ss_dssp CCCBBSSSCCBCCSC-EEEETTEEECTTTC
T ss_pred CCCCCccCCCEecce-EEEECCccccccCC
Confidence 346899999988543 55557888888885
No 122
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.80 E-value=15 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.6
Q ss_pred CccccccccccccC
Q psy8809 220 DNVCIICREEMQSA 233 (261)
Q Consensus 220 ~~~C~IClee~~~~ 233 (261)
+-.|++|+.++.+.
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 57999999998754
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.53 E-value=34 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.678 Sum_probs=20.2
Q ss_pred cCCccccccccccccCCEEec-----cCCcccHhhHH
Q psy8809 218 EADNVCIICREEMQSASKKLP-----CNHIFHTSCLR 249 (261)
Q Consensus 218 ~~~~~C~IClee~~~~~r~Lp-----C~H~FH~~CL~ 249 (261)
..++.|.+|.+. + ..+- |...||..|+.
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc
Confidence 356789999942 3 3443 55899999997
No 124
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.42 E-value=40 Score=21.84 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=4.5
Q ss_pred cccccccccc
Q psy8809 222 VCIICREEMQ 231 (261)
Q Consensus 222 ~C~IClee~~ 231 (261)
.|..|...+.
T Consensus 33 ~C~~C~~~L~ 42 (70)
T 2d8z_A 33 VCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCT
T ss_pred ccCCCCCcCC
Confidence 4444444443
No 125
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.05 E-value=25 Score=23.95 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=21.6
Q ss_pred CCccccccccccccCCEEeccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL 248 (261)
....|+-|-+.+.++.....-+..||.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 43 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF 43 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTC
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccC
Confidence 346899999888755444456788888884
No 126
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.47 E-value=24 Score=23.49 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=11.5
Q ss_pred ccccccccccCCEEeccCCcccHhh
Q psy8809 223 CIICREEMQSASKKLPCNHIFHTSC 247 (261)
Q Consensus 223 C~IClee~~~~~r~LpC~H~FH~~C 247 (261)
|+-|-+...++.....-|..||.+|
T Consensus 3 C~~C~~~I~~~~~v~a~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTSLGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEETTEEEETTT
T ss_pred CCCCCCEEECceEEEECCccccCCC
Confidence 5555555443323333455555554
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.27 E-value=22 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.522 Sum_probs=23.1
Q ss_pred CccccccccccccCCE---EeccCCcccHhhHHHH
Q psy8809 220 DNVCIICREEMQSASK---KLPCNHIFHTSCLRSW 251 (261)
Q Consensus 220 ~~~C~IClee~~~~~r---~LpC~H~FH~~CL~~W 251 (261)
...|..|...|..-.| .-.||.+|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 4689999999975333 2449999999996543
No 128
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.17 E-value=27 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=19.9
Q ss_pred cccccccccccCCEEec---cCCcccHhhHHH
Q psy8809 222 VCIICREEMQSASKKLP---CNHIFHTSCLRS 250 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp---C~H~FH~~CL~~ 250 (261)
.| ||.....++ ..+. |.--||..|+..
T Consensus 30 rC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 30 RC-ICGFTHDDG-YMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp CC-TTSCCSCSS-CEEEBTTTCBEEETTTTTC
T ss_pred Ee-ECCCccCCC-cEEEcCCCCCcCcCcCCCC
Confidence 56 898776555 4444 779999999865
No 129
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.78 E-value=13 Score=27.38 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=22.3
Q ss_pred cccccccccccCCEEec---cCCcccHhhHHHHhhc
Q psy8809 222 VCIICREEMQSASKKLP---CNHIFHTSCLRSWFQR 254 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL~~ 254 (261)
.|.+|.+.=.++...+- |...||..|+++=+..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~ 98 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCC
Confidence 78999874222223443 7899999999875543
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.74 E-value=26 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=11.2
Q ss_pred cccccccccccCC-EEeccCCcccHhh
Q psy8809 222 VCIICREEMQSAS-KKLPCNHIFHTSC 247 (261)
Q Consensus 222 ~C~IClee~~~~~-r~LpC~H~FH~~C 247 (261)
.|+-|-+...++. ....-|..||.+|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT
T ss_pred CCccCCCcccCCceEEEECcCeecccC
Confidence 4555555544322 2222344455444
No 131
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.34 E-value=33 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=13.4
Q ss_pred ccccccccccccCCEEeccCCcccHhh
Q psy8809 221 NVCIICREEMQSASKKLPCNHIFHTSC 247 (261)
Q Consensus 221 ~~C~IClee~~~~~r~LpC~H~FH~~C 247 (261)
..|+-|-+... +.....-|..||.+|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTT
T ss_pred CCCcccCCEec-ceEEEECccccccCc
Confidence 45666666555 223333455566555
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.23 E-value=18 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=21.8
Q ss_pred CccccccccccccCCEEec---cCCcccHhhHHHHh
Q psy8809 220 DNVCIICREEMQSASKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 220 ~~~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL 252 (261)
+..|.+|...=..+ ..|- |...||..|+++=|
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl 60 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPL 60 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCC
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCCCc
Confidence 34788998643233 4444 78999999998533
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.52 E-value=18 Score=32.64 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=0.0
Q ss_pred CccccccccccccCCE---EeccCCcccHhhHHHHh
Q psy8809 220 DNVCIICREEMQSASK---KLPCNHIFHTSCLRSWF 252 (261)
Q Consensus 220 ~~~C~IClee~~~~~r---~LpC~H~FH~~CL~~WL 252 (261)
...|.+|...|.--.| .-.||++|+..|-....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4689999999974433 34599999999987764
No 134
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=22.23 E-value=19 Score=24.31 Aligned_cols=30 Identities=30% Similarity=0.703 Sum_probs=20.1
Q ss_pred cccccccccccCCEEec---cCCcccHhhHHHHh
Q psy8809 222 VCIICREEMQSASKKLP---CNHIFHTSCLRSWF 252 (261)
Q Consensus 222 ~C~IClee~~~~~r~Lp---C~H~FH~~CL~~WL 252 (261)
.|.+|...=..+ ..|- |...||..|+++=|
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl 52 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPL 52 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCc
Confidence 567887542223 4555 77999999998543
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.62 E-value=40 Score=22.59 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=18.9
Q ss_pred CccccccccccccCCE-EeccCCcccHhhH
Q psy8809 220 DNVCIICREEMQSASK-KLPCNHIFHTSCL 248 (261)
Q Consensus 220 ~~~C~IClee~~~~~r-~LpC~H~FH~~CL 248 (261)
...|+.|-+....+++ ...=+..||.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 44 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC
T ss_pred CCcCccCCcccccCceEEEECccccccccC
Confidence 3578888887775443 3335777777774
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.34 E-value=56 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=21.7
Q ss_pred CCccccccccccccCCEEeccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL 248 (261)
....|+-|-+...+. ....-+..||.+|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCSS-CEECSSCEECTTTT
T ss_pred CCCccccCCCCccCc-EEEECcceeCcCcC
Confidence 346899999988764 45557888998885
No 137
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=61 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=21.7
Q ss_pred CCccccccccccccCCEEeccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQSASKKLPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~LpC~H~FH~~CL 248 (261)
....|+-|.+...+. ....-+..||.+|.
T Consensus 24 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF 52 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA-VVKARDKYRHPECF 52 (89)
T ss_dssp SCCBCTTTCCBCCSC-CEESSSCEECTTTC
T ss_pred cCCCcccCCCEeccc-EEEECCceECccCC
Confidence 346899999988764 44457888998885
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.08 E-value=24 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=19.7
Q ss_pred CCccccccccccccCCEE-eccCCcccHhhH
Q psy8809 219 ADNVCIICREEMQSASKK-LPCNHIFHTSCL 248 (261)
Q Consensus 219 ~~~~C~IClee~~~~~r~-LpC~H~FH~~CL 248 (261)
....|+-|.+....+.+. ..-|..||.+|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 40 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF 40 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTC
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccC
Confidence 356788888887643333 346777888774
No 139
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.83 E-value=75 Score=21.33 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=19.1
Q ss_pred ccccccccccccCCEEec---cCCcccHhhHH
Q psy8809 221 NVCIICREEMQSASKKLP---CNHIFHTSCLR 249 (261)
Q Consensus 221 ~~C~IClee~~~~~r~Lp---C~H~FH~~CL~ 249 (261)
.-| ||......+ ..+. |..=||..|+.
T Consensus 17 ~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 17 LYC-ICRQPHNNR-FMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCS-TTCCCCCSS-CEEECSSSCCEEEHHHHS
T ss_pred CEE-ECCCccCCC-CEEEeCCCCCcEeCeEEc
Confidence 356 899887543 3444 77889999984
No 140
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.71 E-value=8.8 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=24.7
Q ss_pred CccccccccccccCC--E--Ee---ccCCcccHhhHHHHhhc
Q psy8809 220 DNVCIICREEMQSAS--K--KL---PCNHIFHTSCLRSWFQR 254 (261)
Q Consensus 220 ~~~C~IClee~~~~~--r--~L---pC~H~FH~~CL~~WL~~ 254 (261)
-..|+-|.-..+... . .- +|++.|...|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 357888877776432 1 22 28999999999999754
Done!