RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8809
(261 letters)
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 89.6 bits (222), Expect = 2e-20
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 154 VKVIMYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATS 213
+ ++ Y + + +P++ R MY + + +++ RRA LN +P AT
Sbjct: 221 LTLLAYSLLFMYQFPYVRVPIYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATE 280
Query: 214 DELTEADNVCIICREEM------------QSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
++LT +D C IC +EM K+LPC HI H CL++W +R QTCP
Sbjct: 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCP 338
Score = 30.7 bits (69), Expect = 0.79
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 19/148 (12%)
Query: 6 MISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVF--GFEYAIL-LTVCVNI 62
+IF R +L +LD + + S + +F F +L LT N
Sbjct: 134 QRFHIFS-RFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEFSVLLLNLTSEANK 192
Query: 63 LIKYALHTIDLNREIFWESKAVFFLYMELVMSFVKVIMYIVFVLIMMRVYTLPLFAFRPM 122
L Y D + E ++ + +E+ + ++ Y + + +P++ R M
Sbjct: 193 LCVYNYEARDDDDE-----RSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQM 247
Query: 123 YY----------AARSFRKALKDVNKLL 140
Y FR+A KD+N +
Sbjct: 248 YTCFYALFRRIREHARFRRATKDLNAMY 275
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 61.6 bits (150), Expect = 5e-13
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 221 NVCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQTCPT 260
+ C IC +E + + LPC H+FH CL W + TCP
Sbjct: 1 DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPL 42
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 52.4 bits (126), Expect = 1e-09
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260
C IC EE + LPC H+F SC+ W + TCP
Sbjct: 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to chromosome
metabolism and cell cycle control.
Length = 73
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 220 DNVCIICREEMQSA--SKKLP----------CNHIFHTSCLRSWFQRHQTCPT 260
D+VC ICR K P C H FH C+ W + TCP
Sbjct: 19 DDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPL 71
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 51.4 bits (123), Expect = 2e-09
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWF-QRHQTCPT 260
C IC EE LPC H F SC+R W + TCP
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPI 39
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 46.7 bits (111), Expect = 1e-07
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+ C IC + ++ PC H+F C+ + ++ CP
Sbjct: 2 ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCP 41
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 45.9 bits (109), Expect = 2e-07
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260
C IC EE + LPC H+F + C+ SW + + TCP
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPL 39
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 41.5 bits (97), Expect = 3e-04
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 165 IMMRVY-TLPLFAFRPMYYA---ARSFRKALKDVINSRRAIHHLNNSFPDATSDE----- 215
V+ +P R ++ F L+ IN + + + P T+
Sbjct: 253 GFRVVFPRIPSQELRFLFLTQSKGSRFNIILEIQINFDVGFYSSSEAIPTTTTKGSLKPL 312
Query: 216 ----LTEADN--VCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQ-TCPT 260
EAD C IC + LPC+H FH C+ W + CP
Sbjct: 313 SIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV 366
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation
motif. This zinc-finger is the dimerisation motif for
LisH proteins, and is also a typical RING-type of plant
ubiquitin ligases.
Length = 55
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 222 VCIICREEMQSAS---KKLPCNHIFHTSCLRSWFQRHQT--CPT 260
VC I +E M LPC H++ L + CP
Sbjct: 12 VCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55
>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain.
Length = 47
Score = 34.7 bits (80), Expect = 0.003
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 223 CIICREEM-QSASKKLPCN-----HIFHTSCLRSWFQ--RHQTC 258
C IC E + PC H SCL W + + TC
Sbjct: 1 CRICLEGEEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTC 44
>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and
anaphase-promoting complex [Posttranslational
modification, protein turnover, chaperones / Cell
division and chromosome partitioning].
Length = 88
Score = 35.6 bits (82), Expect = 0.003
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 221 NVCIICREEM-----QSASKKLP----------CNHIFHTSCLRSWFQRHQTCP 259
+VC ICR + + P CNH FH C+ W CP
Sbjct: 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCP 74
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 37.2 bits (86), Expect = 0.005
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWF--QRHQTCP 259
AD C +C EE + S PC H+F SCL + ++++ CP
Sbjct: 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCP 255
>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2
finger. Apc11 is one of the subunits of the
anaphase-promoting complex or cyclosome. The APC
subunits are cullin family proteins with ubiquitin
ligase activity. Polyubiquitination marks proteins for
degradation by the 26S proteasome and is carried out by
a cascade of enzymes that includes ubiquitin-activating
enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and
ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and
is responsible for recruiting E2s to the APC and for
mediating the subsequent transfer of ubiquitin to APC
substrates in vivo. In Saccharomyces cerevisiae this
RING-H2 finger protein defines the minimal ubiquitin
ligase activity of the APC, and the integrity of the
RING-H2 finger is essential for budding yeast cell
viability.
Length = 85
Score = 33.6 bits (77), Expect = 0.014
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 220 DNVCIICREEMQSA--SKKLP----------CNHIFHTSCLRSWFQRHQT---CP 259
D+VC ICR K P C H FH C+ W + CP
Sbjct: 21 DDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCP 75
>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger
like motif found in a number of cellular and viral
proteins. Some of these proteins have been shown both
in vivo and in vitro to have ubiquitin E3 ligase
activity. The RING-variant domain is reminiscent of both
the RING and the PHD domains and may represent an
evolutionary intermediate. To describe this domain the
term PHD/LAP domain has been used in the past. Extended
description: The RING-variant (RINGv) domain contains a
C4HC3 zinc-finger-like motif similar to the PHD domain,
while some of the spacing between the Cys/His residues
follow a pattern somewhat closer to that found in the
RING domain. The RINGv domain, similar to the RING, PHD
and LIM domains, is thought to bind two zinc ions
co-ordinated by the highly conserved Cys and His
residues. RING variant domain: C-x (2) -C-x(10-45)-C-x
(1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a
PHD: C-x(1-2) -C-x
(7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C
Classical RING domain: C-x (2) -C-x
(9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C.
Length = 49
Score = 31.1 bits (71), Expect = 0.053
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 222 VCIICREEMQSASK-KLPCN-----HIFHTSCLRSWF 252
+C IC +E PC H CL W
Sbjct: 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWI 37
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 34.0 bits (78), Expect = 0.070
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 33/153 (21%)
Query: 34 YQTTVTKGASVMIVFGFEYAI-LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL- 91
VT G +++ G E LL V I A I ++ L
Sbjct: 635 QSLIVTLGL--VLLLGVEVKSPLLLVLFAIFSSVAFMII------------IYLLVSLFG 680
Query: 92 -VMSFVKVIMYIVFVLI---MMRVYTLPLFA-----FRPMYYAARSFRKALKDVNKLLIM 142
F+ +++ ++ + + P F P+ YA FR+ + I
Sbjct: 681 NPGKFIAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVNGFREVI----GGPIP 736
Query: 143 NAYSSPLFIGFVKVIMYIVFVLIMMRVYTLPLF 175
+ S L +I++I+ L + LPL
Sbjct: 737 SNLWSGLLALIGFLILFIIGGLFL----KLPLD 765
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 33.9 bits (77), Expect = 0.094
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 223 CIICREEMQSASKKLP------CNHIFHTSCLRSWFQR--HQTCP 259
C IC + + LP C + FHT CL WF CP
Sbjct: 1472 CAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCP 1516
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 32.7 bits (74), Expect = 0.16
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
C IC++ C+H F + C+R CP
Sbjct: 29 CHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQPKCPL 65
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 32.7 bits (74), Expect = 0.18
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 188 RKALKDVINSRRAIHHLNNSFP----DATSDELTEADNVCIICREEMQSASKKLPCNH-I 242
K D N RR N S +++D+ E + C IC + S + PC H I
Sbjct: 25 TKPHNDRKNFRRKQKKNNLSAEPNLTTSSADDTDEENMNCQICAGST-TYSARYPCGHQI 83
Query: 243 FHTSCLR 249
H +R
Sbjct: 84 CHACAVR 90
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 32.4 bits (73), Expect = 0.19
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C IC + S + C H F + C+R CP
Sbjct: 28 CRICDCRI-SIPCETTCGHTFCSLCIRRHLGTQPFCP 63
>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain. This domain is found
at the C-terminus of the Fancl protein in humans which
is the putative E3 ubiquitin ligase subunit of the FA
complex (Fanconi anaemia). Eight subunits of the Fanconi
anaemia gene products form a multisubunit nuclear
complex which is required for mono-ubiquitination of a
downstream FA protein, FANCD2.
Length = 70
Score = 28.5 bits (64), Expect = 0.73
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 239 CNHIFHTSCLRSWFQ 253
C FH +CL W +
Sbjct: 28 CGLPFHIACLYEWLR 42
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 30.5 bits (69), Expect = 0.77
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 220 DNVCIICREEMQSASKK------LP-CNHIFHTSCLRSWFQRHQTCP 259
D C IC E++ K L CNH+F C+ W + TCP
Sbjct: 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCP 220
>gnl|CDD|107063 PHA01750, PHA01750, hypothetical protein.
Length = 75
Score = 27.6 bits (61), Expect = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 160 IVFVLIMMRVYTLPLFAFRPMYYAARS-FRKALKDVINS 197
V VL +M LFA +Y + + A+K+++NS
Sbjct: 4 TVLVLTLMSTTATTLFAIIQLYLKIKQALKDAVKEIVNS 42
>gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional.
Length = 598
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 227 REEMQSASKKLPCNHIF-HTSCLRSWFQRHQ 256
R Q +L + +F HT WF RH
Sbjct: 232 RHATQQRGMRLVLDGVFNHTGDSHPWFDRHN 262
>gnl|CDD|150445 pfam09774, Cid2, Caffeine-induced death protein 2. Members of this
family of proteins mediate the disruption of the DNA
replication checkpoint (S-M checkpoint) mechanism caused
by caffeine.
Length = 149
Score = 28.1 bits (63), Expect = 2.5
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 185 RSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEM 230
R RKA+ D I LN P A+ A+ C +EE+
Sbjct: 12 RLSRKAIDDTI-----TQKLNALKPTASFGGDPNAEQACQSFKEEV 52
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 26.2 bits (58), Expect = 3.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 220 DNVCIICREEMQSASKK----LPCNH-IFHTSCLRSWFQRHQTCP 259
D++C+IC E + LPC H C + + + CP
Sbjct: 2 DDLCVICLER-----PRNVVFLPCGHLCLCEECAKRL-RSKKKCP 40
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger. The plant homeodomain (PHD)
finger is a C4HC3 zinc-finger-like motif found in
nuclear proteins thought to be involved in epigenetics
and chromatin-mediated transcriptional regulation. The
PHD finger binds two zinc ions using the so-called
'cross-brace' motif and is thus structurally related to
the RING finger and the FYVE finger. It is not yet known
if PHD fingers have a common molecular function. Several
reports suggest that it can function as a
protein-protein interacton domain and it was recently
demonstrated that the PHD finger of p300 can cooperate
with the adjacent BROMO domain in nucleosome binding in
vitro. Other reports suggesting that the PHD finger is a
ubiquitin ligase have been refuted as these domains were
RING fingers misidentified as PHD fingers.
Length = 47
Score = 26.0 bits (57), Expect = 4.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 222 VCIICR-----EEMQSASKKLPCNHIFHTSCLR 249
C +C E+ C+ +H +CL
Sbjct: 1 YCSVCGKPDDGGELLQCDG---CDRWYHQTCLG 30
>gnl|CDD|151221 pfam10740, DUF2529, Protein of unknown function (DUF2529). This
family is conserved in the Bacillales. The function is
not known. Several members are annotated as being YWJG,
a protein expressed downstream of pyrG, a gene encoding
for cytidine triphosphate synthetase.
Length = 172
Score = 27.7 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 209 PDATS-DELTEADNVCIICR----EEMQSASKKL 237
DAT ++TE D V + R EE + +KKL
Sbjct: 71 LDATEFADITETDRVLLFSRFSNDEEAVALAKKL 104
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.2 bits (64), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 116 LFAFRPMYYAARS-FRKALKDVNKLL 140
LF P+Y +A S + +ALK N LL
Sbjct: 140 LFQIEPVYASALSQYERALKQRNALL 165
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain. Modified RING
finger domain, without the full complement of
Zn2+-binding ligands. Probable involvement in
E2-dependent ubiquitination.
Length = 63
Score = 25.7 bits (57), Expect = 6.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 237 LPCNHIFHTSCLRSWFQRHQTCP 259
LP + S + W H T P
Sbjct: 17 LPSGQTYERSAIEKWLLSHGTDP 39
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit.
Nse1 and Nse2 are novel non-SMC subunits of the fission
yeast Smc5-6 DNA repair complex. This family is the
zinc-finger domain similar to the MIZ type of
zinc-finger.
Length = 57
Score = 25.7 bits (57), Expect = 6.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 220 DNVCIICREEMQS--ASKKLPCNHIFHTSCLRSWFQRHQT--CP 259
C + + + SKK CNH+F + S +R++T CP
Sbjct: 11 SLTCPLTLQPFEEPVTSKK--CNHVFEKDAILSMLRRNKTVKCP 52
>gnl|CDD|177491 PHA02825, PHA02825, LAP/PHD finger-like protein; Provisional.
Length = 162
Score = 27.1 bits (60), Expect = 6.4
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 214 DELTEADNVCIICREEMQSASKKLPC---NHIFHTSCLRSW--FQRHQTC 258
++++ D C IC++E + C N I H CL W ++++C
Sbjct: 2 EDVSLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSC 51
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 27.9 bits (62), Expect = 6.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 169 VYTLPLFAFRPMYYAARSFRKALKDVINSRRAI 201
V P+ F+P+Y+ A SF A + + + I
Sbjct: 358 VTKYPITEFQPLYFLAESFEDAKEKLKSFAATI 390
>gnl|CDD|143578 cd07469, CRD_TK_ROR_related, Cysteine-rich domain of proteins
similar to tyrosine kinase-like orphan receptors. The
cysteine-rich domain (CRD) is an essential part of the
tyrosine kinase-like orphan receptor (Ror) proteins, a
conserved family of tyrosine kinases that function in
various processes, including neuronal and skeletal
development, cell polarity, and cell movement. Ror
proteins are receptors of Wnt proteins, which are key
players in a number of fundamental cellular processes in
embryogenesis and postnatal development. In different
cellular contexts, Ror proteins can either activate or
repress transcription of Wnt target genes, and can
modulate Wnt signaling by sequestering Wnt ligands.
Length = 147
Score = 27.0 bits (60), Expect = 7.2
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 16/49 (32%)
Query: 205 NNSFPDATS----------DELTEADNVCIICREEMQSASKKLPCNHIF 243
N+S+ D +EL V +CR A++KL CN+ F
Sbjct: 26 NSSYADPEGLNEQLTTGLWEELI--KTVSELCR----PAAEKLLCNYAF 68
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate
in most catabolic and anabolic reactions.
Length = 350
Score = 27.2 bits (61), Expect = 9.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 20 TVLGLLDLYFVVGAYQ--TTVTKGASVMIVFGF 50
+L +L F G Q T G ++++ F
Sbjct: 45 RILAVLPFSFDYGLSQLLTAFRVGGTLVLESRF 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.143 0.435
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,518,805
Number of extensions: 1336240
Number of successful extensions: 3088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2991
Number of HSP's successfully gapped: 188
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.1 bits)