RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8809
(261 letters)
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 68.2 bits (167), Expect = 2e-15
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 216 LTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+ C IC E+ + S LPC H F C+ W +++ TCP
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCP 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 65.9 bits (161), Expect = 1e-14
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
S + + + C IC + LPC H F C+ W RH+ CP
Sbjct: 2 SSGSSGRVKQLTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCP 52
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 65.5 bits (160), Expect = 2e-14
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 213 SDELTEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
++E + C +C+E+ ++LPCNH+FH SC+ W ++H +CP
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCP 56
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 64.6 bits (157), Expect = 4e-14
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ--TCPT 260
+A +C IC + C H C+ +FQ + CP
Sbjct: 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 62.2 bits (151), Expect = 3e-13
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASKK------LPCNHIFHTSCLRSWFQRHQTCPT 260
S + + C IC + + C H+F + CLR + TCPT
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 61.9 bits (151), Expect = 3e-13
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 218 EADNVCIICREEMQSASKK---LPCNHIFHTSCLRSWFQRHQTCPT 260
+ C IC E++ ++ LPC H+ H +C + CP
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPL 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 61.2 bits (149), Expect = 1e-12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 213 SDELTEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQTCP 259
+ C IC E +LPC+H FH C+ W Q+ TCP
Sbjct: 33 DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCP 81
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 59.8 bits (145), Expect = 3e-12
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 215 ELTEADNVCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQTCP 259
+ +C +C E+ + + PC H FH CL W + + CP
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 61.0 bits (147), Expect = 3e-12
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 22/71 (30%)
Query: 212 TSDELTEADNVCIICREEMQSAS-----------------KKLPCNHIFHTSCLRSWFQR 254
T + + CIIC E++ AS + C+H FH CL + +
Sbjct: 17 TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76
Query: 255 HQ-----TCPT 260
CP+
Sbjct: 77 GNKDGSLQCPS 87
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 58.7 bits (142), Expect = 8e-12
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 209 PDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
+ E E C ICR+ Q+ C H F SC F+ C
Sbjct: 4 GSSGGSEEEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYI 54
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 57.4 bits (139), Expect = 2e-11
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 218 EADNVCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQTCP 259
+ + C IC ++ +LPC H+FH C+ W ++ CP
Sbjct: 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 55
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 57.0 bits (138), Expect = 3e-11
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 212 TSDELTEADNVCIICREEMQSASK--KLPCNHIFHTSCLRSWFQRHQTCP 259
+ +C++C + +S LPCNH FH C+ W + ++TCP
Sbjct: 15 NPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCP 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 57.2 bits (138), Expect = 3e-11
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 211 ATSDELTEADNVCIICREEMQSASKK------LPCNHIFHTSCLRSWFQRHQTCPT 260
T+ C IC + + C H+F + CLR + TCPT
Sbjct: 1 GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 56
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 55.5 bits (134), Expect = 9e-11
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 223 CIICREEMQSASKK------LPCNHIFHTSCLRSWFQRHQTCPT 260
C IC + + C H+F + CLR + TCPT
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 49
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 55.3 bits (133), Expect = 3e-10
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 202 HHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260
HH ++S D S E C IC E+++ A C+ + SC+R W + CP
Sbjct: 4 HHHHHSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPH 63
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 53.2 bits (128), Expect = 7e-10
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
C IC+ + A+ C H F SC+ F CP
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPK 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 52.6 bits (126), Expect = 1e-09
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 220 DNVCIICREEMQSASKKL---PCNHIFHTSCLRSWFQRHQTCP 259
+ C+ C+ E + + CNH FH C+ W +++ CP
Sbjct: 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCP 68
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 53.5 bits (128), Expect = 3e-09
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 178 RPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKL 237
+ ++ K L+ + + +D L E + CIIC E A L
Sbjct: 23 KDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVL-ENELQCIICSEYFIEAVT-L 80
Query: 238 PCNHIFHTSCLRSWFQRHQTCPT 260
C H F + C+ W +R CP
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPI 103
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 51.4 bits (123), Expect = 3e-09
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 211 ATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+ + + C IC + LPC H+F C++ + C
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASWLGKRCA 53
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 52.2 bits (124), Expect = 5e-09
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 17/58 (29%)
Query: 220 DNVCIICREEMQS-----------------ASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
+ C ICR + CNH FH C+ W + Q CP
Sbjct: 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 51.0 bits (121), Expect = 1e-08
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 17/58 (29%)
Query: 220 DNVCIICREEMQSASK-----------------KLPCNHIFHTSCLRSWFQRHQTCPT 260
+ C ICR + CNH FH C+ W + Q CP
Sbjct: 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 52.8 bits (126), Expect = 3e-08
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 212 TSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260
E+ +C IC E + K PC H+ TSCL SW + Q CP
Sbjct: 324 LYCEMGSTFQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQESEGQGCPF 372
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 49.0 bits (116), Expect = 9e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 223 CIICREEMQSASKK------LPCNHIFHTSCLRSWFQRHQTCPTE 261
C IC + + C H+F + CLR + TCPT
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 54
Score = 43.6 bits (102), Expect = 8e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 222 VCIICREEMQSASKK------LPCNHIFHTSCLRSWFQRHQTCPT 260
C IC + + C H+F + CLR + TCPT
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 118
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 213 SDELTEADNVCIICREEMQS--ASKKLP-CNHIFHTSCLRSWFQRHQTCPT 260
D+ E C +C E++ ++ LP C H FH C+ W H TCP
Sbjct: 2 MDDGVE----CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 47.1 bits (112), Expect = 3e-07
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
L C++C A+ + C H F +C+ + + + CP
Sbjct: 14 PHLM-----CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPI 55
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 49.3 bits (117), Expect = 3e-07
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 187 FRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTS 246
+ + RAI + + D + C IC + C H
Sbjct: 151 LIEKEGEFTLHGRAILEMEQYIRETYPDAVKI----CNICHSLLIQGQSCETCGIRMHLP 206
Query: 247 CLRSWFQRHQ--TCPT 260
C+ +FQ + CP
Sbjct: 207 CVAKYFQSNAEPRCPH 222
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 44.1 bits (103), Expect = 2e-05
Identities = 13/72 (18%), Positives = 17/72 (23%), Gaps = 18/72 (25%)
Query: 206 NSFPDATSDELTEADNVCIICREEMQSASKK-------LPCNHIFHTSCLRSWFQR---- 254
+ DE + C IC + C H CL WF+
Sbjct: 294 DWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDG 353
Query: 255 -------HQTCP 259
CP
Sbjct: 354 KTFLEVSFGQCP 365
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 40.3 bits (94), Expect = 3e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASK-KLPCN-----HIFHTSCLRSWF--QRHQTC 258
S + + + ++C IC E S PC+ H H +CL+ W + C
Sbjct: 2 SSGSSGTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 61
Query: 259 P 259
Sbjct: 62 E 62
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 40.9 bits (96), Expect = 4e-05
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
C IC E A C+H + + C+R + CPT
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPT 62
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 37.8 bits (88), Expect = 2e-04
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 209 PDATSDELTEADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWFQRHQ--TCPT 260
D DEL C+IC++ M A +P C + + C+R+ TCPT
Sbjct: 9 DDPIPDELL-----CLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPT 57
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 38.4 bits (89), Expect = 4e-04
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 206 NSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCL-RSWFQRHQTCP 259
F + CI C+E + C H CL RS+ + +CP
Sbjct: 43 QLFLSKVEETFQ-----CICCQELVFRP-ITTVCQHNVCKDCLDRSFRAQVFSCP 91
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 38.0 bits (88), Expect = 6e-04
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCL-RSWFQRHQTCP 259
E C IC E + LPCNH C + + CP
Sbjct: 14 SECQ-----CGICMEILVEP-VTLPCNHTLCKPCFQSTVEKASLCCP 54
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 36.7 bits (84), Expect = 0.001
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 215 ELTEADNVCIICREEMQSASKKLPC---NHIFHTSCLR 249
E D +C +C E+ +A PC +FH CLR
Sbjct: 10 EPVVNDEMCDVC--EVWTAESLFPCRVCTRVFHDGCLR 45
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 36.2 bits (83), Expect = 0.001
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 210 DATSDELTEADNVCIICREEMQSASKKL----PCNHIFHTSCLR 249
D E C++CR+ ++ +L C++++H C +
Sbjct: 6 SGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 35.1 bits (81), Expect = 0.002
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 218 EADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260
E C C + S + C H F SC+ + C
Sbjct: 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTA 55
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 35.8 bits (82), Expect = 0.002
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 205 NNSFPDATSDELTEADNVCIICREEMQSASKKL----PCNHIFHTSCLR-------SWF 252
+ +S L + D VC IC + S + CN H C W
Sbjct: 10 STGGSSGSSQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 68
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 35.5 bits (81), Expect = 0.002
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 211 ATSDELTEADNVCIICREEMQSASKKL---PCNHIFHTSCLRSWF-QRHQTCPT 260
+ S + E C +C E ++ C + C + CP
Sbjct: 2 SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPA 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 34.6 bits (80), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
C C+ E + K LPC H + CL + CP
Sbjct: 8 RCQQCQAEAKCP-KLLPCLHTLCSGCLEA---SGMQCPI 42
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 37.6 bits (86), Expect = 0.003
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 189 KALKDVINSRRAIHHLNNSFPDATSDELTEADNV--------CIICREEMQSASKKLPCN 240
LK + + PD + + + C I + ++ CN
Sbjct: 142 DTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCN 201
Query: 241 HIFHTSCLRSWFQRHQT--CPT 260
H+F ++++ Q + T CP
Sbjct: 202 HVFDRDGIQNYLQGYTTRDCPQ 223
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 34.2 bits (78), Expect = 0.004
Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 220 DNVCIICREEMQSASKKL----PCNHIFHTSCLRSWFQRHQ-TCPT 260
D C C+ C H SC+ F R CP
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE 48
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 34.7 bits (80), Expect = 0.004
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 207 SFPDATSDELTEADNVCIICRE---EMQSASKKLPCNHIFHTSCLRSWFQRHQ---TCPT 260
DA + L C IC E E Q K L C H CL CP
Sbjct: 7 GNLDALREVLE-----CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 35.3 bits (81), Expect = 0.005
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
L C C ++ C HIF ++C+ CP
Sbjct: 21 KLLR-----CSRCTNILREPVCLGGCEHIFCSNCVSDCIGT--GCPV 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 35.1 bits (80), Expect = 0.006
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 201 IHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCP 259
+ L F EA +C CR ++ + C H + + CL S Q C
Sbjct: 12 LELLQPGFSKTLLGTKLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCA 70
Query: 260 T 260
Sbjct: 71 A 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 35.4 bits (81), Expect = 0.007
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 208 FPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260
F + C IC ++ A + PC H F +C+ + CP
Sbjct: 11 FDPPLESKYE-----CPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPV 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 32.8 bits (75), Expect = 0.009
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 218 EADNVCIICREEMQSASKKLPCN-----HIFHTSCLRSWFQ--RHQTCP 259
E VC IC EE + C H SCL +W R+ C
Sbjct: 4 EDVPVCWICNEE-LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ 51
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 32.9 bits (75), Expect = 0.012
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 11/50 (22%)
Query: 214 DELTEADNVCIICREEMQSASKKL----PCNHIFHTSCLR-------SWF 252
L + D VC IC + S + CN H C W
Sbjct: 10 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 59
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 34.2 bits (78), Expect = 0.015
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCL-RSWFQRHQTCPT 260
+F C+ C+E + C H CL RS+ + +CP
Sbjct: 70 NFLKKLEQSFM-----CVCCQELVYQP-VTTECFHNVCKDCLQRSFKAQVFSCPA 118
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 33.6 bits (77), Expect = 0.016
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 208 FPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260
F + C IC ++ A + PC H F +C+ + CP
Sbjct: 11 FDPPLESKYE-----CPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPV 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 32.8 bits (75), Expect = 0.018
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 209 PDATSDELTEADNVCIICREEMQSASKKLP-CNHIFHTSCLRSWF--QRHQTCPT 260
P + D+ + +C+IC++ M A +P C + + C+R+ TCPT
Sbjct: 2 PLGSEDDPIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPT 55
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 32.2 bits (73), Expect = 0.020
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 217 TEADNVCIICREEMQSASKKL----PCNHIFHTSCLRSWFQRHQTCPTE 261
+ + VC IC+EE A ++ C +H C E
Sbjct: 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE 51
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 32.9 bits (74), Expect = 0.023
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQR-HQTCPT 260
C C ++ + +PC H+F C ++ + CP
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPG 42
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 32.1 bits (73), Expect = 0.039
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 223 CIICREEMQSAS--KKLPCNHIFHTSCLRSWFQ 253
C +C E C IF T CL+ + +
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 30.4 bits (69), Expect = 0.066
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+C I + + IF S L + + P
Sbjct: 5 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDP 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 32.3 bits (73), Expect = 0.087
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCL-RSWFQRHQTCPT 260
EL C IC + +++ C H F C+ + ++ CPT
Sbjct: 53 SELM-----CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPT 95
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 31.4 bits (71), Expect = 0.096
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 208 FPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-QTCPT 260
FP ++ C IC + + C H+F C+ + CP+
Sbjct: 16 FPAHFVKSIS-----CQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPS 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 30.7 bits (69), Expect = 0.11
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 23/72 (31%)
Query: 202 HHLNNSFPDATSDELTEADNVCIICREEMQSASKKL----PCNHIFHTSCLR-------- 249
HH + S L ++ +C +C++ L C FH C
Sbjct: 7 HHHHGSDIIDEFGTLDDSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPG 61
Query: 250 -SWFQRHQTCPT 260
W C
Sbjct: 62 EEWS-----CSL 68
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 29.3 bits (66), Expect = 0.15
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 19/59 (32%)
Query: 213 SDELTEADNVCIICRE--EMQSASKKLPCNHIFHTSCLR---------SWFQRHQTCPT 260
S + ++ C +CR+ ++ C+ ++H CL W CP
Sbjct: 2 SSGSSGHEDFCSVCRKSGQLLMCDT---CSRVYHLDCLDPPLKTIPKGMWI-----CPR 52
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 29.3 bits (65), Expect = 0.23
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTC 258
C IC E+ + C SC + WF H+ C
Sbjct: 11 CGICTNEVNDDQDAILCEA----SCQK-WF--HRIC 39
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 30.0 bits (67), Expect = 0.25
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 218 EADNVCIICREEMQSASKKLP--------CNHIFHTSCLRSW 251
E +C C + +K P C + H SCL+
Sbjct: 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFS 44
Score = 29.3 bits (65), Expect = 0.52
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 17/52 (32%)
Query: 220 DNVCIICREEMQSASKKL---PCNHIFHTSCLR---------SWFQRHQTCP 259
C CR++ ++A L C+ FH C W C
Sbjct: 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWI-----CQ 107
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 29.3 bits (66), Expect = 0.28
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT---CP 259
+E+ C IC + +Q + C H F C+ + CP
Sbjct: 19 EEVI-----CPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCP 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 28.3 bits (63), Expect = 0.54
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 214 DELTEADNVCIICREEMQSAS-KKLPCNHIFH-TSCLRSWFQRHQTCP 259
++ C +C + + + H+ C R + +CP
Sbjct: 1 EDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCP 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 28.8 bits (64), Expect = 0.58
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ------TCP 259
C I +EEM+ K C H + + + Q CP
Sbjct: 10 CPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 28.1 bits (63), Expect = 0.72
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 237 LPCNHIFHTSCLRSWFQRHQTCP 259
LP + S + T P
Sbjct: 30 LPSGTVMDRSIILRHLLNSPTDP 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 28.5 bits (64), Expect = 0.77
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 183 AARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKLPCNHI 242
+ F + +++++ + PD E + M + LP I
Sbjct: 1 GSHKFAEKVEEIVAKNARAEIDYSDAPD----EF-----RDPLMDTLMTDPVR-LPSGTI 50
Query: 243 FHTSCLRSWFQRHQTCP 259
S + T P
Sbjct: 51 MDRSIILRHLLNSPTDP 67
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 27.7 bits (62), Expect = 0.78
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT---CP 259
F + +E+ C IC + +Q + C H F C+ + CP
Sbjct: 12 QFVNKLQEEVI-----CPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCP 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 27.5 bits (61), Expect = 1.0
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 209 PDATSDELTEADNVCIICREEMQSASKKLPCNHIFH-TSCLRSWFQRHQTCP 259
+ + E C++C+ + LPC H C + Q CP
Sbjct: 4 GSSGVEPSEENSKDCVVCQNGTVNW-VLLPCRHTCLCDGC----VKYFQQCP 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 213 SDELTEADNVCIICREEMQSAS-KKLPCNHIFH-TSCLRSWFQRHQTCP 259
S A C+IC+ ++ H+ +C + +R++ CP
Sbjct: 1 SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCP 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 28.0 bits (61), Expect = 1.5
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTC 258
C CR E+ + C SC + WF H+ C
Sbjct: 6 CGACRSEVNDDQDAILCEA----SCQK-WF--HREC 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.3 bits (61), Expect = 1.7
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 207 SFPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT------CP 259
S + +E+T C IC E ++ CNH F +C+ ++ ++ CP
Sbjct: 11 SVLEMIKEEVT-----CPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCP 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 27.6 bits (61), Expect = 1.9
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 217 TEADNVCIICREEMQSASKKL--PCNHIFHTSCLRSW 251
+ C +C + C +H CL
Sbjct: 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA 40
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 28.4 bits (62), Expect = 2.2
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 192 KDVINSRRAIHHLNNSFPDATSDELTEADN----VCIICREEMQSASKKLPCNHIFHTSC 247
K + N + + E+ +C + + + + + C H+
Sbjct: 183 KGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHL-QCFD 241
Query: 248 LRSWFQRHQTCPT 260
+ Q ++ PT
Sbjct: 242 AALYLQMNEKKPT 254
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 27.3 bits (60), Expect = 2.3
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 9/40 (22%)
Query: 221 NVCIICREEMQSASKKLP---------CNHIFHTSCLRSW 251
+ C C K C H +CL+
Sbjct: 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A
{Aspergillus niger} PDB: 3fa3_A
Length = 302
Score = 28.4 bits (64), Expect = 2.4
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 22/75 (29%)
Query: 127 RSFRKALKDVNKLLIMNAY-SSPLF-------IGFVKVIMYIVFVLIMMRVYTLPLFAFR 178
R + L LL M + ++P +GF ++I++ P A
Sbjct: 199 RQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGF-RIIIF-------------PFAALG 244
Query: 179 PMYYAARSFRKALKD 193
P A R + LK
Sbjct: 245 PAVAAMREAMEKLKR 259
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 121 PMYYAARSFRKALKDVNKLLIM----NAYS 146
PM AA S R+AL++ + ++ + S
Sbjct: 1 PMVTAATSLRRALENPDSFIVAPGVYDGLS 30
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.9
Identities = 17/142 (11%), Positives = 42/142 (29%), Gaps = 50/142 (35%)
Query: 123 YYAARSFRKALKDVNKLLIMNAYSSPLF----IGFVKVIMYIVF--------VLIMMR-- 168
Y AR + K +S LF G ++ +F +R
Sbjct: 126 YITARI-------MAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDL 176
Query: 169 --VYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHH-------LNNSFPDATSDE---- 215
Y + + + ++A + + ++ +++ + L N P T D+
Sbjct: 177 YQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLL 232
Query: 216 ----------LTEADNVCIICR 227
+ + + + +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAK 254
Score = 27.7 bits (61), Expect = 4.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 237 LPCNHIFHTSCLRSWFQRHQTCPTE 261
+P F S L+ F + PTE
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTE 46
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 25.7 bits (57), Expect = 3.3
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT---CP 259
E + C +C E ++ + C H F +C+ W++ + CP
Sbjct: 14 VEAS-----CSVCLEYLKEP-VIIECGHNFCKACITRWWEDLERDFPCP 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 27.6 bits (62), Expect = 4.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 183 AARSFRKALKDVINSRRAIHHLN 205
A + +A +D + R+ N
Sbjct: 124 AYQRLLEASQDTLYPERSRVFEN 146
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center
for structural genomics, MCSG, O 5-phosphate
decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Length = 290
Score = 27.8 bits (61), Expect = 4.1
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 183 AARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSA 233
+ V+NS RAI ++ D + A I EE+++
Sbjct: 237 VYKLLEGLNGGVVNSSRAILKNWQNYEDGSEKVGYYARKKAIETYEEIKAN 287
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 27.2 bits (61), Expect = 4.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 183 AARSFRKALKDVINSRRAIHHLN 205
+ F KAL D I +LN
Sbjct: 96 SMAYFDKALADPTYPTPYIANLN 118
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 5.2
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 214 DELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQT-------CP 259
+E+T C IC E + L C H +C+ + T CP
Sbjct: 11 EEVT-----CPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 27.2 bits (61), Expect = 6.1
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 158 MYIVFVLIMMRVYTLPLFAFRPMYYAARSFRKALK-------DVINSRRAIHHLNNSFPD 210
+ ++ I TL F R R++++ D + RR P
Sbjct: 167 VKLMLEGITASRNTLAKFLPGKRKQL-REVRESIRFLRQVGRDWVQRRREALKRGEEVPA 225
Query: 211 ATSDELTEADN 221
++ +A+
Sbjct: 226 DILTQILKAEE 236
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 25.8 bits (57), Expect = 7.1
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 15/52 (28%)
Query: 214 DELTEADNVCIICREEMQ---SASKKLPCNHIFHTSCLRSWFQRHQ---TCP 259
L C IC E ++ S C+HIF C+ + + CP
Sbjct: 20 KILE-----CPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCP 62
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 27.0 bits (59), Expect = 7.4
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 2/82 (2%)
Query: 178 RPMYYAARSFRKALKDVINSRRAIHHLNNSFPDATSDELTEADNVCIICREEMQSASKKL 237
R A+ F + L + N + D E + + M+
Sbjct: 851 RKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEF--LDPLMYTIMKDPVILP 908
Query: 238 PCNHIFHTSCLRSWFQRHQTCP 259
S +++ T P
Sbjct: 909 ASKMNIDRSTIKAHLLSDSTDP 930
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.143 0.435
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,051,383
Number of extensions: 240028
Number of successful extensions: 868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 101
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.1 bits)