RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8809
(261 letters)
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 60.3 bits (146), Expect = 5e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 217 TEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
T A+ C IC E+ + S LPC H F C+ W +++ TCP
Sbjct: 3 TVAER-CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPL 45
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 56.0 bits (135), Expect = 2e-11
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 218 EADNVCIICREEMQSASK--KLP-CNHIFHTSCLRSWFQRHQTCPT 260
+ C +C E++ + LP C H FH C+ W H TCP
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 48
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 54.4 bits (130), Expect = 2e-10
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 17/58 (29%)
Query: 220 DNVCIICREEMQSASKK-----------------LPCNHIFHTSCLRSWFQRHQTCPT 260
+ C ICR + + CNH FH C+ W + Q CP
Sbjct: 21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 53.8 bits (129), Expect = 2e-10
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 215 ELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQ-RHQTCPT 260
E+ +C IC E + K PC H+ TSCL SW + Q CP
Sbjct: 18 EMGSTFQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQESEGQGCPF 63
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 49.1 bits (117), Expect = 6e-09
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCPT 260
C C+ E + K LPC H + CL + CP
Sbjct: 8 RCQQCQAEAKCP-KLLPCLHTLCSGCLEAS---GMQCPI 42
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 47.3 bits (111), Expect = 9e-08
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 22/63 (34%)
Query: 220 DNVCIICREEMQSAS-----------------KKLPCNHIFHTSCLRSWFQR-----HQT 257
+ CIIC E++ AS + C+H FH CL + +
Sbjct: 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQ 84
Query: 258 CPT 260
CP+
Sbjct: 85 CPS 87
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 44.7 bits (105), Expect = 2e-07
Identities = 5/40 (12%), Positives = 9/40 (22%), Gaps = 3/40 (7%)
Query: 223 CIICREEMQSASKK---LPCNHIFHTSCLRSWFQRHQTCP 259
C +C E ++ C + C
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLC 42
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 43.3 bits (101), Expect = 8e-07
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 218 EADNVCIICREEMQSA----SKKLPCNHIFHTSCLRSWFQRHQ--TCPT 260
E VC IC EE+ + H SCL +W + C
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQI 52
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 42.5 bits (99), Expect = 2e-06
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 220 DNVCIICREEMQSASKK----LPCNHIFHTSCLRSWFQ-RHQTCPT 260
D C C+ C H SC+ F CP
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE 48
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 41.7 bits (97), Expect = 6e-06
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 209 PDATSDELTEADN--VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTC 258
+ L + C C ++ C HIF ++C+
Sbjct: 9 WAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPV 60
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 39.3 bits (91), Expect = 6e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 210 DATSDELTEADNV---------CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ---T 257
D ++ + E NV C IC E ++ C+HIF C+ + +
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 258 CPT 260
CP
Sbjct: 61 CPL 63
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 37.6 bits (87), Expect = 2e-04
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 208 FPDATSDELTEADNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQ-TCPT 260
FP ++ C IC + + C H+F C+ + CP+
Sbjct: 16 FPAHFVKSIS-----CQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPS 63
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 35.5 bits (81), Expect = 3e-04
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+C I + + IF S L + + P
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDP 39
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 34.4 bits (78), Expect = 0.002
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 211 ATSDELTEADNVCIICREEMQSASKKL----PCNHIFHTSCLR 249
D E C++CR+ ++ +L C++++H C +
Sbjct: 7 GADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 33.1 bits (75), Expect = 0.005
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 217 TEADNVCIICREEMQSAS--KKLPCNHIFHTSCLRSWFQRHQ--------TCP 259
+ + C +C E C IF T CL+ + + +CP
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP 54
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 31.8 bits (72), Expect = 0.015
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 215 ELTEADNVCIICREEMQSASKKLPC---NHIFHTSCLR 249
E D +C +C E+ +A PC +FH CLR
Sbjct: 10 EPVVNDEMCDVC--EVWTAESLFPCRVCTRVFHDGCLR 45
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 29.7 bits (66), Expect = 0.068
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 223 CIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
C I E M+ + + S ++ W
Sbjct: 11 CPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTC 46
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 30.2 bits (67), Expect = 0.072
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
+ I M S + QT P
Sbjct: 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 27.6 bits (61), Expect = 0.31
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 9/48 (18%)
Query: 218 EADNVCIICRE--EMQSASKKLPCNHIFHTSCLRSWFQRHQT----CP 259
C +C++ E+ C +H CL CP
Sbjct: 7 HHMEFCRVCKDGGELLCCDT---CPSSYHIHCLNPPLPEIPNGEWLCP 51
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 203
Score = 29.3 bits (66), Expect = 0.33
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 161 VFVLIMMRVYTLPLFAFRPMYYAARSFRKALKDVINSRRAIHH-LNNSFPDAT 212
V V + Y P+ P ++ +R + V R+ + P +
Sbjct: 104 VVVCTLCSCYPWPVLGLPPNWFKEPQYRSRV--VREPRQLLKEEFGFEVPPSK 154
Score = 25.5 bits (56), Expect = 6.4
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 103 VFVLIMMRVYTLPLFAFRPMYYAARSFRKAL 133
V V + Y P+ P ++ +R +
Sbjct: 104 VVVCTLCSCYPWPVLGLPPNWFKEPQYRSRV 134
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 27.3 bits (60), Expect = 0.43
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 19/56 (33%)
Query: 215 ELTEADNVCIICRE--EMQSASKKLPCNHIFHTSCLR---------SWFQRHQTCP 259
L ++ +C +C++ ++ ++ C FH C W C
Sbjct: 2 TLDDSATICRVCQKPGDLVMCNQ---CEFCFHLDCHLPALQDVPGEEWS-----CS 49
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 26.8 bits (58), Expect = 1.6
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 220 DNVCIICREEMQSASKKLPCNHIFHTSCLRSWFQRH-----QTCP 259
D C+ C E Q + C C + CP
Sbjct: 48 DKRCLPCHPECQPQNSSETCFGSEADQCAACAHYKDSSSCVARCP 92
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 25.6 bits (55), Expect = 2.5
Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 222 VCIICREEMQSASKKLPCNHIFHTSCLRSWFQRHQTCP 259
I E M+ P + + QR
Sbjct: 9 CGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFN 45
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII,
N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Length = 103
Score = 25.3 bits (55), Expect = 3.6
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 216 LTEADNVCIICREEMQSASKKLPCNHIFHTSCLRS 250
+ C+IC+ E+ + +H H
Sbjct: 16 YDAQNGKCLICQRELNPDVQANHLDHD-HELNGPK 49
>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 374
Score = 26.6 bits (59), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 19 LTVLGLLDLYFVVGAYQTTVTKGASVMI 46
LT+ LLD GAY+ V G ++
Sbjct: 181 LTIYALLDSPRATGAYKFVVMPGRDTVV 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.334 0.143 0.435
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 988,588
Number of extensions: 44892
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 36
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.3 bits)