Query psy8810
Match_columns 218
No_of_seqs 118 out of 232
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:51:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 9.6E-32 2.1E-36 236.3 18.5 213 1-217 1-217 (491)
2 KOG0802|consensus 99.8 3.4E-20 7.3E-25 175.4 18.0 211 6-216 2-216 (543)
3 PF13705 TRC8_N: TRC8 N-termin 97.5 0.019 4.1E-07 54.1 19.0 180 30-216 270-458 (508)
4 cd04904 ACT_AAAH ACT domain of 44.9 21 0.00045 24.5 2.4 37 181-217 14-50 (74)
5 cd04929 ACT_TPH ACT domain of 40.0 25 0.00053 24.4 2.1 36 181-216 14-49 (74)
6 cd04931 ACT_PAH ACT domain of 38.0 26 0.00057 25.4 2.1 37 180-216 27-63 (90)
7 cd04930 ACT_TH ACT domain of t 23.5 70 0.0015 24.2 2.3 37 180-216 54-90 (115)
8 PF06638 Strabismus: Strabismu 19.4 6.7E+02 0.015 24.1 8.3 69 132-203 160-229 (505)
9 PRK11899 prephenate dehydratas 19.0 81 0.0018 27.7 2.1 38 179-216 206-243 (279)
10 PRK14475 F0F1 ATP synthase sub 17.6 1.3E+02 0.0027 24.1 2.7 28 39-69 9-36 (167)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-32 Score=236.26 Aligned_cols=213 Identities=25% Similarity=0.412 Sum_probs=181.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHh
Q psy8810 1 MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITK-SNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMER 79 (218)
Q Consensus 1 mr~~~Y~~~S~~l~~~~v~~a~~~~~~fy~~~v~l~~-s~~~~~vl~N~~~~~~~l~~~~l~~lfFG~LR~~E~e~l~er 79 (218)
||.++|++.|.++.+.+++-+++..++-|++.+..++ |++++++..|+++++..++|+++++++||+||..|.||++||
T Consensus 1 ~r~i~y~l~~~Vl~~l~~~~~~~~s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~E~e~~~E~ 80 (491)
T COG5243 1 MRFILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTFELELLYEQ 80 (491)
T ss_pred CceeehhHHHHHHHHHHHHHHHhccceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 8999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCccHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8810 80 SWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFH--IRIIVLLTVLGLLDLYFVVG 157 (218)
Q Consensus 80 ~~~~v~~~~l~~~if~~~~~~~~~~~f~~L~~lK~fhwl~~dR~e~l~~sp~~~~~~h--~R~~~ll~~l~~~D~~~i~~ 157 (218)
+|++++|++++.++|+++++.++..++..|+++|+|||++++|.|...- .++...+| .|+.+++.+|.++|..++..
T Consensus 81 l~~tlt~~ll~iS~F~e~i~fs~~~l~~~Ll~~kvfhwil~~R~er~~~-~st~~~~~ifSrfS~~~~lL~ild~~li~~ 159 (491)
T COG5243 81 LWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTERLQI-QSTDQRFHIFSRFSCAYFLLSILDASLIYL 159 (491)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999997532 23444444 59999999999999999999
Q ss_pred HHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeeec
Q psy8810 158 AYQTTVT-KGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELV 217 (218)
Q Consensus 158 ~~~~~~~-~g~s~~llf~fE~~iL~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el~ 217 (218)
|+.+... +|.+. .++-.||-.+........-|-.+..+|.++++ ++|++|.||+|+.
T Consensus 160 CiSs~~liD~~~l-fL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD--d~rs~~~f~~~v~ 217 (491)
T COG5243 160 CISSEHLIDKSTL-FLFVCEFSVLLLNLTSEANKLCVYNYEARDDD--DERSTYLFRLEVC 217 (491)
T ss_pred HhhhHhhhhhhHH-HHHHHHHHHHHHHHHHhhcccceeeccccccc--ccceeeeeeeehH
Confidence 9986543 33333 33444555555444444445555566766666 8999999999963
No 2
>KOG0802|consensus
Probab=99.85 E-value=3.4e-20 Score=175.40 Aligned_cols=211 Identities=27% Similarity=0.357 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCcchhhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhHH-HHH
Q psy8810 6 LPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSW-YAV 84 (218)
Q Consensus 6 Y~~~S~~l~~~~v~~a~~~~~~fy~~~v~l~~s~~~~~vl~N~~~~~~~l~~~~l~~lfFG~LR~~E~e~l~er~~-~~v 84 (218)
|...|..++...+.+|+..+.|+||+.+++.+++.+++++.|..++.....++.++.+|||.||..|.||+.|++| +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~ 81 (543)
T KOG0802|consen 2 YVRSSALATIKTIFSAYLGSAQSISTTVLLLSSPTSLAVLLNRALVVLALILLSLQLIFFGALLLSEAEHLSHSLWNLIG 81 (543)
T ss_pred cchhhHHHHHHHHHHHHHhhhcccccceeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999999999 667
Q ss_pred HHHHHhh--hcccCCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8810 85 TETCLAF--TVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTT 162 (218)
Q Consensus 85 ~~~~l~~--~if~~~~~~~~~~~f~~L~~lK~fhwl~~dR~e~l~~sp~~~~~~h~R~~~ll~~l~~~D~~~i~~~~~~~ 162 (218)
.+..+.. +.|+..+...|..|+.+++++|+|||+++||+++++.+|..+...|.|+.+.+..+...|...+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~ 161 (543)
T KOG0802|consen 82 LKYTFLLGYVTFRTVLSELFSLWLLLLLFLHVFHLLASDRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTA 161 (543)
T ss_pred HHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766 67777776789999999999999999999999999999988899999999999999999999887777776
Q ss_pred h-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 163 V-TKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 163 ~-~~g~s~~llf~fE~~iL~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
. ..|.+..+.+.+|.+++.........+|.+|.-+-....+||.|..+.++.+.
T Consensus 162 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~l~~~~~~ 216 (543)
T KOG0802|consen 162 YRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTADHIHIRSEDLSLLTFTLII 216 (543)
T ss_pred HHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcchhhcCcccCccceeechhHH
Confidence 6 67888878899999999999999999999998873444567999999998764
No 3
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.48 E-value=0.019 Score=54.09 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=115.4
Q ss_pred hhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhHHHH-HHHHHHhhh--c--ccCCc-hhHH-
Q psy8810 30 PSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYA-VTETCLAFT--V--FKDDF-SPKF- 102 (218)
Q Consensus 30 ~~~v~l~~s~~~~~vl~N~~~~~~~l~~~~l~~lfFG~LR~~E~e~l~er~~~~-v~~~~l~~~--i--f~~~~-~~~~- 102 (218)
+.+..-++|+.++.-+.-.+-...-.++...|...=|+ ++.|.++ +.+.. ++-.++++- . .+++. ...-
T Consensus 270 ~~v~~~C~T~~sllgms~vvS~ia~~i~~~~~~~l~g~-~~~~~~~---~G~~~~vlf~iLalQTGL~~l~~~~R~~~L~ 345 (508)
T PF13705_consen 270 SSVAEGCDTPLSLLGMSFVVSYIAHYIGLLCQFFLGGY-DEFEDKN---RGTTEAVLFFILALQTGLLGLKPEQRLVRLS 345 (508)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccccccc---cchHHHHHHHHHHHHhCCccCCHHHHHHHHH
Confidence 34455556777666666555556666677777655554 4433333 33332 222233321 1 22221 1111
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhhhhhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHH-HHHHHHHH
Q psy8810 103 -VALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIV-FGFEYAIL 180 (218)
Q Consensus 103 -~~~f~~L~~lK~fhwl~~dR~e~l~~sp~~~~~~h~R~~~ll~~l~~~D~~~i~~~~~~~~~~g~s~~ll-f~fE~~iL 180 (218)
..+...-..++..|=+..-.+-.+..|++.++..|.|-.+.-..+.+.-..+....... ...++-++ ...-+...
T Consensus 346 ~~l~lv~ta~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~y~l~~~---~~i~tWll~v~s~~~~t 422 (508)
T PF13705_consen 346 RNLFLVLTALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLSYYLWSF---FPIDTWLLIVTSFCVET 422 (508)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHH
Confidence 12335556778888888888888888888899999999998888887777655443332 23343332 33334445
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
.+..+.+...|.+.++|-+++++||+=-.|+||++-
T Consensus 423 ~vkv~~sl~iY~Lf~vd~~~~~~WE~LDD~VYyv~a 458 (508)
T PF13705_consen 423 IVKVLGSLAIYILFMVDARREEPWEKLDDYVYYVRA 458 (508)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhcccEEEEEec
Confidence 666888999999999999999999999999999874
No 4
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=44.86 E-value=21 Score=24.48 Aligned_cols=37 Identities=3% Similarity=0.196 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeeec
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELV 217 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el~ 217 (218)
+.+++..+.++.+|+-.+...+.=.++..|.||+|+-
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 4567788888888887765544444556799999973
No 5
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.01 E-value=25 Score=24.45 Aligned_cols=36 Identities=6% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
+.+++..+.++.+|+--+...+.=.++..|.||+|+
T Consensus 14 L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 14 LAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 456788888888888666544433444569999996
No 6
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.98 E-value=26 Score=25.37 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 180 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 180 L~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
-+.+++..+.++.+|+--+.....=.++..|.||+|+
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 3567888888888888766544444444579999996
No 7
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.51 E-value=70 Score=24.20 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 180 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 180 L~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
-+.+++..+.++.+|+--+-....=+++..|.||+|+
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 3567888888888888666544444445579999996
No 8
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=19.41 E-value=6.7e+02 Score=24.13 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCccC
Q psy8810 132 ISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKY-ALHTIDLNREIF 203 (218)
Q Consensus 132 ~~~~~h~R~~~ll~~l~~~D~~~i~~~~~~~~~~g~s~~llf~fE~~iL~~~~l~~~~ky-~l~l~dl~~~~~ 203 (218)
.||.+..|...+.++++++=.+|+.|.+.-...+..+..- .-+|+.-+++++--+ +| .+-+.|+|+.+|
T Consensus 160 lPRif~fRa~ll~Lvfl~~~syWLFY~vrIl~~~~~dy~~--IV~yA~SlvDaLLFi-HYlavvLLElR~lqp 229 (505)
T PF06638_consen 160 LPRIFVFRALLLVLVFLFLFSYWLFYGVRILDPRESDYQG--IVSYAVSLVDALLFI-HYLAVVLLELRHLQP 229 (505)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhheeeechhhhHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 4899999998888887777777777766644333333222 245667666765443 34 456678876543
No 9
>PRK11899 prephenate dehydratase; Provisional
Probab=19.00 E-value=81 Score=27.71 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 179 ILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 179 iL~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
..+.++++.+.+..+|+-.+.+...=.+...|.||+|+
T Consensus 206 GaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 206 AALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred ChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 46678899999999998877554443444589999997
No 10
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=17.56 E-value=1.3e+02 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy8810 39 NSSMAVIYIQALILVILAGKLVKKIFFGQLR 69 (218)
Q Consensus 39 ~~~~~vl~N~~~~~~~l~~~~l~~lfFG~LR 69 (218)
+...|.++||++.++++++. +.++|+++
T Consensus 9 ~~~~w~~i~f~il~~iL~~~---k~l~~pi~ 36 (167)
T PRK14475 9 NPEFWVGAGLLIFFGILIAL---KVLPKALA 36 (167)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHhHHHHH
Confidence 55678889999888877653 55667654
Done!