Query psy8810
Match_columns 218
No_of_seqs 118 out of 232
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3luy_A Probable chorismate mut 11.2 82 0.0028 27.1 1.3 37 180-216 221-257 (329)
2 3tq7_B Microtubule-associated 10.7 45 0.0015 22.9 -0.5 12 62-73 25-36 (82)
3 2i5u_A DNAD domain protein; st 10.6 3.6E+02 0.012 17.7 4.2 15 65-79 13-27 (83)
4 3twe_A Alpha4H; unknown functi 9.9 1.6E+02 0.0054 15.4 1.6 12 71-82 8-19 (27)
5 2qmw_A PDT, prephenate dehydra 9.6 80 0.0027 26.3 0.6 36 181-216 203-238 (267)
6 3mwb_A Prephenate dehydratase; 9.3 79 0.0027 27.0 0.5 38 179-216 214-251 (313)
7 1jr5_A 10 kDa anti-sigma facto 9.1 1.1E+02 0.0039 21.2 1.1 19 62-80 55-73 (90)
8 2k5k_A Uncharacterized protein 9.0 59 0.002 21.7 -0.4 15 200-214 49-63 (70)
9 2qmx_A Prephenate dehydratase; 8.9 98 0.0033 26.0 0.9 37 180-216 213-249 (283)
10 3mtu_A Tropomyosin alpha-1 cha 8.0 66 0.0023 21.5 -0.5 12 63-74 34-45 (75)
No 1
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=11.25 E-value=82 Score=27.12 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 180 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 180 L~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
.+..++..+.+..+|+--+-+...=++...|.||+|+
T Consensus 221 aL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 257 (329)
T 3luy_A 221 VLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL 257 (329)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE
Confidence 4567888888888887665444333455589999997
No 2
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=10.73 E-value=45 Score=22.94 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.8
Q ss_pred HHhcccCcHHHH
Q psy8810 62 KIFFGQLRAAEF 73 (218)
Q Consensus 62 ~lfFG~LR~~E~ 73 (218)
-..||+||.+|.
T Consensus 25 DFYF~KLRdIEi 36 (82)
T 3tq7_B 25 DFYFSKLRDIEL 36 (82)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357899999986
No 3
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=10.58 E-value=3.6e+02 Score=17.68 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=12.8
Q ss_pred cccCcHHHHHHHHHh
Q psy8810 65 FGQLRAAEFEHLMER 79 (218)
Q Consensus 65 FG~LR~~E~e~l~er 79 (218)
||.|.+.|.|.+.+=
T Consensus 13 ~g~ls~~e~e~i~~w 27 (83)
T 2i5u_A 13 FGLMSSKTMTDFDYW 27 (83)
T ss_dssp SCSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 699999999998763
No 4
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=9.95 E-value=1.6e+02 Score=15.39 Aligned_cols=12 Identities=42% Similarity=0.410 Sum_probs=9.0
Q ss_pred HHHHHHHHhHHH
Q psy8810 71 AEFEHLMERSWY 82 (218)
Q Consensus 71 ~E~e~l~er~~~ 82 (218)
-|.|.+.||++.
T Consensus 8 keledlqerlrk 19 (27)
T 3twe_A 8 KELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477888888764
No 5
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=9.60 E-value=80 Score=26.32 Aligned_cols=36 Identities=6% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
+.+++..+.++.+|+--+-+...=++...|.||+|+
T Consensus 203 L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 203 LASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp HHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 456778888888877655433333333479999996
No 6
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=9.33 E-value=79 Score=27.01 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 179 ILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 179 iL~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
..+..++..+.+..+|+--+-....=++...|.||+|+
T Consensus 214 GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 214 GALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp THHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 34567888888888877555433222333369999997
No 7
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=9.07 E-value=1.1e+02 Score=21.23 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHhcccCcHHHHHHHHHhH
Q psy8810 62 KIFFGQLRAAEFEHLMERS 80 (218)
Q Consensus 62 ~lfFG~LR~~E~e~l~er~ 80 (218)
+-.+++|.+.|++++.|.+
T Consensus 55 r~m~~~lt~~ek~elieeF 73 (90)
T 1jr5_A 55 RKIVSELTQEDKKTLIDEF 73 (90)
T ss_dssp HHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHCCHHHHHHHHHHH
Confidence 4478999999999999864
No 8
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=9.05 E-value=59 Score=21.67 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=9.6
Q ss_pred CccCcccceeEeEEe
Q psy8810 200 REIFWESKAVFFLYM 214 (218)
Q Consensus 200 ~~~~We~K~~~~~y~ 214 (218)
+.++||.|+.-.-++
T Consensus 49 RYGDWE~kG~a~~~~ 63 (70)
T 2k5k_A 49 RFGDWEKKGIAIDFL 63 (70)
T ss_dssp SCCCCCCCSTTCCC-
T ss_pred ccccchhcceeehhh
Confidence 347899998654433
No 9
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=8.93 E-value=98 Score=25.99 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 180 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 180 L~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
.+.+++..+.+..+|+--+-+...=.+...|.||+|+
T Consensus 213 aL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~ 249 (283)
T 2qmx_A 213 SLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF 249 (283)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE
T ss_pred hHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE
Confidence 4557788888888877655433333334479999997
No 10
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=8.04 E-value=66 Score=21.50 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=9.8
Q ss_pred HhcccCcHHHHH
Q psy8810 63 IFFGQLRAAEFE 74 (218)
Q Consensus 63 lfFG~LR~~E~e 74 (218)
..||+||.+|.-
T Consensus 34 FYf~KLRdiE~l 45 (75)
T 3mtu_A 34 FYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678999999864
Done!