Query psy8810
Match_columns 218
No_of_seqs 118 out of 232
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qmwa2 d.58.18.3 (A:185-264) 42.4 3.2 0.00023 26.7 0.6 36 181-216 16-51 (80)
2 d1phza1 d.58.18.3 (A:19-115) P 41.3 4.4 0.00032 27.1 1.2 36 181-216 30-65 (97)
3 d1wu9a1 a.245.1.1 (A:191-249) 24.0 6.1 0.00045 24.1 -0.5 12 62-73 25-36 (59)
4 d2i5ua1 a.275.1.1 (A:2-75) Unc 23.0 19 0.0014 22.6 1.9 17 62-78 7-23 (74)
5 d1sqwa2 d.17.6.3 (A:1-94) Nip7 19.4 33 0.0024 22.6 2.5 23 66-88 2-24 (94)
6 d1r8ja1 a.186.1.1 (A:177-282) 15.3 77 0.0056 21.0 3.6 33 64-98 2-34 (106)
7 d1x4pa1 a.217.1.1 (A:8-60) Arg 15.2 64 0.0046 18.5 2.7 25 56-80 4-28 (53)
8 d1tlha_ a.150.1.1 (A:) Anti-si 10.0 52 0.0038 21.1 1.3 20 62-81 54-73 (89)
9 d1xrda1 f.3.1.1 (A:1-52) Light 7.9 2.1E+02 0.015 16.3 4.1 24 108-131 23-46 (52)
10 d2z15a1 d.370.1.1 (A:10-126) T 6.9 2.5E+02 0.018 18.6 4.0 29 59-87 11-39 (117)
No 1
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=42.37 E-value=3.2 Score=26.70 Aligned_cols=36 Identities=6% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
+.+++..+.++.+|+-.+...+.=.++..|.||+|+
T Consensus 16 L~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~ 51 (80)
T d2qmwa2 16 LASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 51 (80)
T ss_dssp HHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 456788888888888776544444555689999997
No 2
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.31 E-value=4.4 Score=27.06 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeee
Q psy8810 181 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 216 (218)
Q Consensus 181 ~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el 216 (218)
+.+++..+.++.+|+-.+-....=.++..|.||+|+
T Consensus 30 L~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~ 65 (97)
T d1phza1 30 LAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL 65 (97)
T ss_dssp HHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred HHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence 557888888999988777544333344479999996
No 3
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.01 E-value=6.1 Score=24.09 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=9.9
Q ss_pred HHhcccCcHHHH
Q psy8810 62 KIFFGQLRAAEF 73 (218)
Q Consensus 62 ~lfFG~LR~~E~ 73 (218)
-..||+||++|.
T Consensus 25 dFYF~KLRdIEi 36 (59)
T d1wu9a1 25 DFYFGKLRNIEL 36 (59)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457899999995
No 4
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=23.00 E-value=19 Score=22.58 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHhcccCcHHHHHHHHH
Q psy8810 62 KIFFGQLRAAEFEHLME 78 (218)
Q Consensus 62 ~lfFG~LR~~E~e~l~e 78 (218)
.=.||.|+|.|.|.|.+
T Consensus 7 ~ngfG~lsp~~~e~i~~ 23 (74)
T d2i5ua1 7 NNGFGLMSSKTMTDFDY 23 (74)
T ss_dssp TTTSCSCCHHHHHHHHH
T ss_pred hCCCCCcCHHHHHHHHH
Confidence 33699999999999986
No 5
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.40 E-value=33 Score=22.57 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.2
Q ss_pred ccCcHHHHHHHHHhHHHHHHHHH
Q psy8810 66 GQLRAAEFEHLMERSWYAVTETC 88 (218)
Q Consensus 66 G~LR~~E~e~l~er~~~~v~~~~ 88 (218)
-+|++.|.+.+.||+..++-+-+
T Consensus 2 RpLteeEtk~vfeKLa~yiG~Ni 24 (94)
T d1sqwa2 2 RPLTEEETRVMFEKIAKYIGENL 24 (94)
T ss_dssp EECCHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHHHHHHhhhH
Confidence 37999999999999999998754
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=15.30 E-value=77 Score=20.98 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=26.5
Q ss_pred hcccCcHHHHHHHHHhHHHHHHHHHHhhhcccCCc
Q psy8810 64 FFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDF 98 (218)
Q Consensus 64 fFG~LR~~E~e~l~er~~~~v~~~~l~~~if~~~~ 98 (218)
|+++|.+.|++.+.+++...=-+.+ +.-|+++.
T Consensus 2 Flr~L~p~ErqeLL~~Lk~~YR~Il--LsYF~~d~ 34 (106)
T d1r8ja1 2 FLRNLPAYESQKLHQAMQTSYREIV--LSYFSPNS 34 (106)
T ss_dssp STTTSCHHHHHHHHHHHHHHHHHHH--HHHTSTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH--HHHcCCcH
Confidence 7899999999999999988766644 45577664
No 7
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.17 E-value=64 Score=18.46 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhH
Q psy8810 56 AGKLVKKIFFGQLRAAEFEHLMERS 80 (218)
Q Consensus 56 ~~~~l~~lfFG~LR~~E~e~l~er~ 80 (218)
+-++++++.=|.|++-|+..+++.=
T Consensus 4 IeqlV~~ii~G~LspkeR~~~k~~P 28 (53)
T d1x4pa1 4 IDQLVKRVIEGSLSPKERTLLKEDP 28 (53)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHSG
T ss_pred HHHHHHHHHcCCCCHHHHHHhhcCC
Confidence 3577889999999999999888753
No 8
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=10.04 E-value=52 Score=21.15 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHhcccCcHHHHHHHHHhHH
Q psy8810 62 KIFFGQLRAAEFEHLMERSW 81 (218)
Q Consensus 62 ~lfFG~LR~~E~e~l~er~~ 81 (218)
+=.|++|.+.|++.+.|.+-
T Consensus 54 rqm~~~Lt~~er~elie~Fn 73 (89)
T d1tlha_ 54 RKIVSELTQEDKKTLIDEFN 73 (89)
T ss_dssp HHHHHSSCHHHHHHHHHHCH
T ss_pred HHHHHHCCHHHHHHHHHHHH
Confidence 45789999999999999763
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.91 E-value=2.1e+02 Score=16.33 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhCCC
Q psy8810 108 LLLFLKAFHWLTEDRVDFMERSPM 131 (218)
Q Consensus 108 ~L~~lK~fhwl~~dR~e~l~~sp~ 131 (218)
++.++--|--++.||.+.++..|.
T Consensus 23 ~LAl~IHfiLLSt~rfNWleg~~~ 46 (52)
T d1xrda1 23 VLALLIHFILLSTERFNWLEGAST 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhccCccccccCCCc
Confidence 344445577788999999987553
No 10
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=2.5e+02 Score=18.60 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHhcccCcHHHHHHHHHhHHHHHHHH
Q psy8810 59 LVKKIFFGQLRAAEFEHLMERSWYAVTET 87 (218)
Q Consensus 59 ~l~~lfFG~LR~~E~e~l~er~~~~v~~~ 87 (218)
++.++++|+|...-.+...|++-..+.+.
T Consensus 11 Fl~~~l~~kl~~~~~~~F~~~L~~~L~~~ 39 (117)
T d2z15a1 11 FIISYLYNKLPRRRVNIFGEELERLLKKK 39 (117)
T ss_dssp HHHTTTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 34666789999888888888888887775
Done!