RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8810
         (218 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.26
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 41/239 (17%)

Query: 3   SLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKK 62
           + GL ++ + L                P   Y+     S  +I +  L   ++  K +  
Sbjct: 210 TQGLNILEW-LENPSNT----------PDKDYLLSIPISCPLIGVIQLAHYVVTAK-LLG 257

Query: 63  IFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFL-----KAF-- 115
              G+LR+   +     S   VT   +A T   + F        T+L F+     +A+  
Sbjct: 258 FTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316

Query: 116 ----HWLTEDRVDFME--RSPMISYIFHIRIIVLLTVLGLLDLYFVVGAY-QTTVTKGAS 168
                 + ED ++  E   SPM+S I ++    +   +   + +   G   + ++  GA 
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375

Query: 169 VMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVF---FL---------YME 215
            ++V G   + L  + + +    A   +D +R  F E K  F   FL          + 
Sbjct: 376 NLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 4.1
 Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 52/147 (35%)

Query: 58  KLVKKI--FFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDD--FSPKFVALFTLLLFLK 113
           KL   I      L  AE+  + +             +VF               L L   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFD-----------RLSVFPPSAHIPTI-----LLSLI-- 395

Query: 114 AFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVF 173
              W    + D M             ++  L    L++                      
Sbjct: 396 ---WFDVIKSDVMV------------VVNKLHKYSLVEKQPKESTISI------------ 428

Query: 174 GFEYAILLTVCVNILIKYALHTIDLNR 200
               +I L + V +  +YALH   ++ 
Sbjct: 429 ---PSIYLELKVKLENEYALHRSIVDH 452



 Score = 27.5 bits (60), Expect = 4.6
 Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 61/182 (33%)

Query: 35  ITKSNSSMAVIYIQALILVIL--AGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFT 92
           I  S  +++       +   L    + + + F  ++    ++ LM        +  +   
Sbjct: 54  IIMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 93  VFKDD----------FSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIV 142
           ++ +           F+   V+     L L+    L E R            +       
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPA--------KNV------- 153

Query: 143 LLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREI 202
              + G+L      G+       G + +          L VC++  ++       ++ +I
Sbjct: 154 --LIDGVL------GS-------GKTWVA---------LDVCLSYKVQCK-----MDFKI 184

Query: 203 FW 204
           FW
Sbjct: 185 FW 186


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.1 bits (60), Expect = 5.8
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 30/84 (35%)

Query: 124  DFMERSPMISYIFHIRII------VLLTVLGLLDLYFVVGAYQTTVT------------- 164
            D  +  P+ + I     I      V + ++         G  +T V              
Sbjct: 1064 DRFKDEPVQNDILQESFINTMSAWVNMLLISS------SGPIKTPVGACATSVESVDIGV 1117

Query: 165  ----KG-ASVMIVFGFEYAILLTV 183
                 G A + IV G++       
Sbjct: 1118 ETILSGKARICIVGGYDDFQEEGS 1141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.144    0.428 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,360,127
Number of extensions: 195906
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 6
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.2 bits)