Query psy8812
Match_columns 142
No_of_seqs 110 out of 157
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:54:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1unk_A Colicin E7; immunity pr 26.6 17 0.00058 25.1 0.5 24 24-47 62-85 (87)
2 3u43_A Colicin-E2 immunity pro 25.9 18 0.00061 25.2 0.5 24 24-47 61-84 (94)
3 3hdf_A Lysozyme; antimicrobial 23.8 27 0.00091 25.2 1.1 45 86-130 61-105 (140)
4 2k0d_X IMME7, colicin-E7 immun 23.4 28 0.00095 24.7 1.1 24 24-47 76-99 (101)
5 2anv_A Lysozyme; direct method 22.4 20 0.00067 25.9 0.2 43 86-128 71-113 (146)
6 1r0d_A HIP1-related, huntingti 21.3 81 0.0028 24.8 3.5 20 93-112 93-112 (206)
7 1he1_A Exoenzyme S, EXOS; sign 21.3 23 0.00079 26.3 0.3 44 43-88 20-63 (135)
8 1gxg_A Colicin E8 immunity pro 21.2 26 0.00088 23.9 0.5 24 24-47 60-83 (85)
9 1r4t_A Exoenzyme S; EXOS, GAP, 21.1 29 0.00098 26.3 0.8 44 43-88 22-65 (153)
10 1fr2_A Colicin E9 immunity pro 19.8 28 0.00095 23.8 0.5 24 24-47 61-84 (86)
No 1
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=26.56 E-value=17 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.0
Q ss_pred ccccChHHHhhhhhhhhccccCHH
Q psy8812 24 QLVPDARKEAAHKWRTDEFLLGFN 47 (142)
Q Consensus 24 ~lvPd~~~ea~~K~r~l~Gi~G~~ 47 (142)
..-|...++..++||...|.+||-
T Consensus 62 edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 62 DDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccC
Confidence 455677788899999999999983
No 2
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=25.87 E-value=18 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.3
Q ss_pred ccccChHHHhhhhhhhhccccCHH
Q psy8812 24 QLVPDARKEAAHKWRTDEFLLGFN 47 (142)
Q Consensus 24 ~lvPd~~~ea~~K~r~l~Gi~G~~ 47 (142)
..-|...++..++||...|.+||-
T Consensus 61 e~SPEgIv~~IKeWRa~nG~pgFK 84 (94)
T 3u43_A 61 EDSPEGIVKEIKEWRAANGKSGFK 84 (94)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCCCB
T ss_pred CCCHHHHHHHHHHHHHHcCCccch
Confidence 456777788899999999999984
No 3
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=23.80 E-value=27 Score=25.19 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=34.7
Q ss_pred HHHHHHhhHHHHhhcCchhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8812 86 IRDLFWLPIEQYQKDGRIVRGLQRGANSFTTSTAMAALELTARIV 130 (142)
Q Consensus 86 ~~dLv~~Pi~eYrkDGri~rglqkG~~sF~ktt~~e~l~Lg~r~a 130 (142)
+.+.+.+|+.|.++|-=+-=..+-|+..|.+||....++-+..-.
T Consensus 61 v~~~v~~~l~q~q~dALvSfafNvG~g~~~~Stllk~lnaGd~~~ 105 (140)
T 3hdf_A 61 INPYIKVDIPETMRGALYSFVYNVGAGNFRTSTLLRKINQGDIKG 105 (140)
T ss_dssp HGGGCCSCCCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHTCHHH
T ss_pred HHHhccccCCHHHHHHHHHHHHhcCCCcccccHHHHHHHCcCHHH
Confidence 334445678888888777778899999999999999888876543
No 4
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=23.39 E-value=28 Score=24.70 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred ccccChHHHhhhhhhhhccccCHH
Q psy8812 24 QLVPDARKEAAHKWRTDEFLLGFN 47 (142)
Q Consensus 24 ~lvPd~~~ea~~K~r~l~Gi~G~~ 47 (142)
..-|...++..++||...|.+||-
T Consensus 76 e~sPEgIvk~IKeWRa~nGkPgFK 99 (101)
T 2k0d_X 76 GGGPEGIVKEIKEWRAANGKPGFK 99 (101)
T ss_dssp TSSGGGHHHHHHHHHHHHTCCCCB
T ss_pred CCCHHHHHHHHHHHHHHcCCcccC
Confidence 566788899999999999999983
No 5
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=22.40 E-value=20 Score=25.93 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHhhHHHHhhcCchhHhhhhhHHHHHHHHHHHHHHHHHH
Q psy8812 86 IRDLFWLPIEQYQKDGRIVRGLQRGANSFTTSTAMAALELTAR 128 (142)
Q Consensus 86 ~~dLv~~Pi~eYrkDGri~rglqkG~~sF~ktt~~e~l~Lg~r 128 (142)
+.+++-+|+.|.++|-=+-=..+-|+..|.+||....++-|..
T Consensus 71 v~~~~~v~l~q~q~dALvsf~yNvG~g~~~~Stl~k~ln~Gd~ 113 (146)
T 2anv_A 71 ISSLVRVPLNQNQYDAMCSLIFNIGKSAFAGSTVLRQLNLKNY 113 (146)
T ss_dssp HHHHCCSCCCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHTTCH
T ss_pred HHHhCCCCCCHHHHHHHHhhhhccCCCccCcchHHHHHHCCCH
Confidence 3445556888899887666688999999999998888887754
No 6
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1
Probab=21.33 E-value=81 Score=24.76 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=14.5
Q ss_pred hHHHHhhcCchhHhhhhhHH
Q psy8812 93 PIEQYQKDGRIVRGLQRGAN 112 (142)
Q Consensus 93 Pi~eYrkDGri~rglqkG~~ 112 (142)
|-+.|+||+|--.||---+.
T Consensus 93 ~~~fy~kn~~WtEGLISAAk 112 (206)
T 1r0d_A 93 QQEFYAKNSRWTEGLISASK 112 (206)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred CccccccCCchhHHHHHHHH
Confidence 66779999997777754333
No 7
>1he1_A Exoenzyme S, EXOS; signaling protein, signalling complex, EXOS, RAC, pseudomonas aeruginosa, GAP, virulence factor; HET: GDP; 2.0A {Pseudomonas aeruginosa} SCOP: a.24.11.1 PDB: 1he9_A
Probab=21.27 E-value=23 Score=26.34 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=28.4
Q ss_pred ccCHHHHHHHHHHHhhHHhhhcchhhhhcCCCchHHHHHHhhhHHH
Q psy8812 43 LLGFNKLLSFMQAEWSQDIYKNQLPSLLGGVGPMYSLVQLAQGIRD 88 (142)
Q Consensus 43 i~G~~~l~~~l~~~W~~dI~~~Ql~~vl~Gv~Pirslv~ig~G~~d 88 (142)
+.|+++. ..|.++=-+..+ .+...+.+|=+|+||+++=-+|+++
T Consensus 20 L~Gl~ka-~~L~~i~~e~L~-knh~~LAtGNG~LRSL~TaLqgi~~ 63 (135)
T 1he1_A 20 LKGLDKA-SELATLTPEGLA-REHSRLASGDGALRSLSTALAGIRA 63 (135)
T ss_dssp HHHHHHT-GGGGGCCHHHHH-HHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred Hhhhhhh-HHHhccCHHHHH-HHHHHHhhCCchHHHHHHHHHHHHh
Confidence 4455555 333332222222 2357788899999999999888888
No 8
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=21.22 E-value=26 Score=23.88 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.3
Q ss_pred ccccChHHHhhhhhhhhccccCHH
Q psy8812 24 QLVPDARKEAAHKWRTDEFLLGFN 47 (142)
Q Consensus 24 ~lvPd~~~ea~~K~r~l~Gi~G~~ 47 (142)
..=|...++..++||...|.+||-
T Consensus 60 e~spE~Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 60 DGSPEAVIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccC
Confidence 566777788899999999999983
No 9
>1r4t_A Exoenzyme S; EXOS, GAP, toxin, virulence factor, signal transduction; NMR {Pseudomonas aeruginosa}
Probab=21.11 E-value=29 Score=26.31 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHHhhHHhhhcchhhhhcCCCchHHHHHHhhhHHH
Q psy8812 43 LLGFNKLLSFMQAEWSQDIYKNQLPSLLGGVGPMYSLVQLAQGIRD 88 (142)
Q Consensus 43 i~G~~~l~~~l~~~W~~dI~~~Ql~~vl~Gv~Pirslv~ig~G~~d 88 (142)
+.|+++. ..|.++=-+... .+...+.+|=+|+||+++=-+|+++
T Consensus 22 L~Gl~ka-~~L~~i~ge~L~-knh~~LATGNG~LRSL~TaLqgI~~ 65 (153)
T 1r4t_A 22 LKGLDKA-SELATLTPEGLA-REHSRLASGDGALRSLSTALAGIRA 65 (153)
T ss_dssp HHHHHTH-HHHTTCCHHHHH-THHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred Hhhhhhh-HHHhccCHHHHH-HHHHHHhhCCchHHHHHHHHHHHHh
Confidence 4455555 334333333332 3367788899999999999888887
No 10
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=19.82 E-value=28 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.4
Q ss_pred ccccChHHHhhhhhhhhccccCHH
Q psy8812 24 QLVPDARKEAAHKWRTDEFLLGFN 47 (142)
Q Consensus 24 ~lvPd~~~ea~~K~r~l~Gi~G~~ 47 (142)
..=|...++..++||...|.+||-
T Consensus 61 e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 61 DDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred CCCHHHHHHHHHHHHHHcCCcccC
Confidence 566777788899999999999983
Done!