RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8812
         (142 letters)



>gnl|CDD|192254 pfam09333, ATG_C, ATG C terminal domain.  ATG2 (also known as
          Apg2) is a peripheral membrane protein. It functions in
          both cytoplasm to vacuole targeting and autophagy.
          Length = 98

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 6  PVMTTSKATSNVLGGVKSQLVPDARKEAAHKWR 38
          P++  ++A S  L G+++QL PDAR+E+  K++
Sbjct: 66 PIIGATEAVSKTLLGLRNQLDPDAREESRDKYK 98


>gnl|CDD|184228 PRK13671, PRK13671, hypothetical protein; Provisional.
          Length = 298

 Score = 27.4 bits (61), Expect = 3.0
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 26/115 (22%)

Query: 30  RKEAAHKWRTDEFL-LGFNKLLSFMQA------EWSQDIYKNQLPSLLGG-----VGPMY 77
           RK+ A K+  D+ + L F       QA         + + K ++  L+ G     +  MY
Sbjct: 54  RKKIALKYGVDKVIKLPFEYA---TQAAHIFAKGAIKKLNKEKIDKLIFGSESNDIELMY 110

Query: 78  SLVQLAQGIRDLFWLPIEQYQKDGRIVRGLQRGANSFTTSTAMAALELTAR-IVM 131
              ++A  I++      E+Y +    ++   +   SF  ++++A  ELT   IVM
Sbjct: 111 ---KIANTIKENE----EEYNQL---LKKNLKQGYSFPKASSLALKELTGSEIVM 155


>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
          Length = 396

 Score = 26.2 bits (58), Expect = 6.6
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 63  KNQLPSLL--GGVGPMYSLVQLA-QGIRDLFWLPIEQYQKDGRIVRGLQRGANSFTTSTA 119
               P L+  GG+G + + + LA QGI+      +EQ  + G I  G+Q G N+F   +A
Sbjct: 2   TKVTPVLIVGGGIGGLAAALALARQGIKVKL---LEQAAEIGEIGAGIQLGPNAF---SA 55

Query: 120 MAAL 123
           + AL
Sbjct: 56  LDAL 59


>gnl|CDD|227156 COG4819, EutA, Ethanolamine utilization protein, possible
           chaperonin protecting lyase from inhibition [Amino acid
           transport and metabolism].
          Length = 473

 Score = 26.4 bits (58), Expect = 6.8
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 60  DIYKNQL---PSLLGGVGPMYSLVQLAQGIRDLFWLPIEQYQKDGRIVRGLQRGANSFTT 116
           D  ++Q    P   G +GP+     L + I +   L   +YQ     +R    GA + T 
Sbjct: 268 DCIRHQPNADPFCYGDIGPL-----LGKAIHEHPRLREMKYQFPAETIRATVVGAGAHTL 322

Query: 117 STAMAALELTARI 129
             + + +  T  I
Sbjct: 323 EISGSTITYTDVI 335


>gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of
           vertebrate complement.  The vertebrate complement
           system, comprised of a large number of distinct plasma
           proteins, is an effector of both the acquired and innate
           immune systems.  The point of convergence of the
           classical, alternative and lectin pathways of the
           complement system is the proteolytic activation of C3.
           C4 plays a key role in propagating the classical and
           lectin pathways. C5 participates in the classical and
           alternative pathways. The thioester bond located within
           the structure of C3 and C4 is central to the function of
           complement. C5 does not contain an active thioester
           bond.
          Length = 297

 Score = 26.1 bits (58), Expect = 7.1
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 26/135 (19%)

Query: 23  SQLVPDARKEAAHKWRTDEFLLGFNKLLSFMQAEWSQDIYKNQLPS--LLGGVGPMYSLV 80
            +L P+ R EA    R      G+ + LS+ + + S   +KN+  S  L   V  ++SL 
Sbjct: 40  EKLGPERRDEALKYIRQ-----GYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLA 94

Query: 81  QLAQGIRD------LFWLPIEQYQKDGR-------IVRGLQRGANSFTTSTAMAALELTA 127
           +    +        + WL I   + DG        I R +  G        ++     TA
Sbjct: 95  RKYIPVDQNVICGSVNWL-ISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSL-----TA 148

Query: 128 RIVMAIQSSQRYTVP 142
            +++A+Q ++    P
Sbjct: 149 FVLIALQEARSICPP 163


>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain.  This
          family appears to be a methyltransferase domain.
          Length = 143

 Score = 25.2 bits (56), Expect = 10.0
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 8/35 (22%)

Query: 21 VKSQLVPDARKEAAHKWRTDEFLLGFNKLLSFMQA 55
           +++LV  A   A          LGFNK +SF++ 
Sbjct: 61 ARAELVEKANARAQ--------KLGFNKRMSFLEG 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,052,046
Number of extensions: 618470
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 15
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)