RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8812
         (142 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.80
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 13/50 (26%)

Query: 70  LGGVGPMYSLVQLAQGIRD----------LFWLPIEQYQKDGRIVRGLQR 109
           + G G    +                   +FWL ++       ++  LQ+
Sbjct: 158 VLGSGKT-WVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204


>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
           phosphorolytic, hydrolase/transferase complex; 3.35A
           {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
          Length = 358

 Score = 25.0 bits (54), Expect = 9.8
 Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 2/41 (4%)

Query: 99  KDGRIVRGLQ-RGANSFTTSTAMAALELTARIVMAIQSSQR 138
           K   I   +Q  G         +   ++    V  I     
Sbjct: 244 KHREIC-TIQSSGGIMLLKDQVLRCSKIAGVKVAEITELIL 283


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,089,183
Number of extensions: 110112
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 7
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)