RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8812
         (142 letters)



>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
           {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
          Length = 320

 Score = 27.9 bits (62), Expect = 0.46
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 17/117 (14%)

Query: 22  KSQLVPDARKEAAHKWRTDEFLLGFNKLLSFMQAEWSQDIYKNQLPSLLGGVGPMYSLVQ 81
           ++Q+    R       R    ++        +   +         PS   G   +     
Sbjct: 54  RAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDI----- 108

Query: 82  LAQGIRDLFWLPIEQYQKDGRIVRGLQRGANSFTTSTAMAALELTARIVMAIQSSQR 138
                       + +Y+     VR  Q    +   +T +  L + ARIV    S+  
Sbjct: 109 ------------LLEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHD 153


>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
           [TaxId: 28214]}
          Length = 351

 Score = 24.6 bits (53), Expect = 6.3
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 82  LAQGIRDLFWLPIEQYQKDGRIVRGLQRGANSFTTST-AMAALELTARI 129
           L +     +   +    +DG  V  + R   S      AM  L + A  
Sbjct: 209 LFRWGLGRYVQAMGLINEDGSFVHEMTRHEQSLHYQNYAMLPLTMIAET 257


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,938
Number of extensions: 19751
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)