BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8817
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AQW|A Chain A, Structure Of Putative
Orotidine-Monophosphate-Decarboxylase From Plasmodium
Yoelii (Py01515)
Length = 332
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 26 QFLEEKLTLDQLSVDLYNGTGSVSDVCLDVQ 56
+F+ E L D ++++Y GT + D+C D +
Sbjct: 154 KFIFEYLKSDSCTINVYXGTNXLKDICFDYE 184
>pdb|2FDS|A Chain A, Crystal Structure Of Plasmodium Berghei Orotidine 5'-
Monophosphate Decarboxylase (Ortholog Of Plasmodium
Falciparum Pf10_0225)
pdb|2FDS|B Chain B, Crystal Structure Of Plasmodium Berghei Orotidine 5'-
Monophosphate Decarboxylase (Ortholog Of Plasmodium
Falciparum Pf10_0225)
Length = 352
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 26 QFLEEKLTLDQLSVDLYNGTGSVSDVCLDVQ 56
+F+ E L D ++++Y GT + D+C D +
Sbjct: 172 KFIFEYLKSDSCTINVYMGTSMLKDICFDYE 202
>pdb|2F84|A Chain A, Crystal Structure Of An Orotidine-5'-monophosphate
Decarboxylase Homolog From P.falciparum
pdb|2Q8L|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Plasmodium Falciparum
pdb|2ZA1|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase Complexed With Orotidine 5'-monophosphate
From P.falciparum
pdb|2ZA1|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase Complexed With Orotidine 5'-monophosphate
From P.falciparum
pdb|2ZA2|A Chain A, Crystal Structure Of The Apo-Form Of Orotidine-5'-
Monophosphate Decarboxylase From P.Falciparum
pdb|2ZA2|B Chain B, Crystal Structure Of The Apo-Form Of Orotidine-5'-
Monophosphate Decarboxylase From P.Falciparum
pdb|2ZA3|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase Complexed With Uridine 5'-Monophosphate
From P.Falciparum
pdb|2ZA3|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase Complexed With Uridine 5'-Monophosphate
From P.Falciparum
pdb|2ZCG|A Chain A, Structure And Inhibition Of Orotidine 5'-Phosphate
Decarboxylase From Plasmodium Falciparum
pdb|2ZCG|B Chain B, Structure And Inhibition Of Orotidine 5'-Phosphate
Decarboxylase From Plasmodium Falciparum
pdb|3VI2|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Omp
Decarboxylase In Complex With Inhibitor Hmoa
pdb|3VI2|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Omp
Decarboxylase In Complex With Inhibitor Hmoa
Length = 323
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 26 QFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
+F+ E L D +V++Y GT + D+C D
Sbjct: 151 KFIFEYLKSDSCTVNIYMGTNMLKDICYD 179
>pdb|2Q8Z|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Complexed With 6-Amino-Ump
pdb|2Q8Z|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Complexed With 6-Amino-Ump
pdb|3BAR|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-phosphate Decarboxylase Covalently Modified By
6-azido-ump
pdb|3BAR|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-phosphate Decarboxylase Covalently Modified By
6-azido-ump
pdb|2QAF|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Covalently Modified By
6-Iodo-Ump
pdb|2QAF|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Covalently Modified By
6-Iodo-Ump
pdb|3BPW|A Chain A, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With Xmp
pdb|3BPW|B Chain B, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With Xmp
pdb|3MWA|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Covalently Modified By
2-Prime-Fluoro-6-Iodo-Ump
pdb|3MWA|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Covalently Modified By
2-Prime-Fluoro-6-Iodo-Ump
pdb|3N2M|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump
pdb|3N2M|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump
pdb|3N34|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump, Produced From 5-
Fluoro-6-Azido-Ump
pdb|3N34|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump, Produced From 5-
Fluoro-6-Azido-Ump
pdb|3N3M|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
6-Amino-Ump
pdb|3N3M|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
6-Amino-Ump
pdb|3S9Y|A Chain A, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|B Chain B, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|C Chain C, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|D Chain D, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
Length = 342
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 26 QFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
+F+ E L D +V++Y GT + D+C D
Sbjct: 170 KFIFEYLKSDSCTVNIYMGTNMLKDICYD 198
>pdb|2FFC|A Chain A, Crystal Structure Of Plasmodium Vivax
Orotidine-Monophosphate- Decarboxyl Ump Bound
Length = 353
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 22 RYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
++ +F+ + L D + ++Y GT + D+CLD
Sbjct: 178 KHYRKFIFDYLRSDSCTANIYMGTQMLRDICLD 210
>pdb|2GUU|A Chain A, Crystal Structure Of Plasmodium Vivax Orotidine
5-Monophosphate Decarboxylase With 6-Aza-Ump Bound
Length = 353
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 22 RYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
++ +F+ + L D + ++Y GT + D+CLD
Sbjct: 178 KHYRKFIFDYLRSDSCTANIYMGTQMLRDICLD 210
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 28 LEEKLTLDQLSVDLYNGTGSVSDVCLDVQLEEEGMSLSSSKIS--WTVSRG 76
L+ + D LS D+ + V L VQL+++G+SL S+ + W +G
Sbjct: 644 LDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 694
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,007,100
Number of Sequences: 62578
Number of extensions: 104893
Number of successful extensions: 159
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)