BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8817
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q80XK6|ATG2B_MOUSE Autophagy-related protein 2 homolog B OS=Mus musculus GN=Atg2b
          PE=1 SV=3
          Length = 2075

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 2/54 (3%)

Query: 1  MSWFFPFSDSWKKRACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
          M W  PFS+S KKRACRYLLQRYLG FL+EKL+L+QLS+DLY GTGS++ V LD
Sbjct: 1  MPW--PFSESIKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLD 52


>sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B
          PE=1 SV=5
          Length = 2078

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 2/54 (3%)

Query: 1  MSWFFPFSDSWKKRACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLD 54
          M W  PFS+S KKRACRYLLQRYLG FL+EKL+L+QLS+DLY GTGS++ V LD
Sbjct: 1  MPW--PFSESIKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLD 52


>sp|Q08D51|ATG2A_XENTR Autophagy-related protein 2 homolog A OS=Xenopus tropicalis
          GN=atg2a PE=2 SV=1
          Length = 1997

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 45/53 (84%)

Query: 3  WFFPFSDSWKKRACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLDV 55
          W FP+S S K RACRYLLQ YLG +LEE+L+L+QLS+DLYNG+G ++D+ LD+
Sbjct: 4  WLFPWSSSIKTRACRYLLQHYLGHYLEERLSLEQLSLDLYNGSGRLTDIHLDI 56


>sp|Q6P4T0|ATG2A_MOUSE Autophagy-related protein 2 homolog A OS=Mus musculus GN=Atg2a
          PE=1 SV=2
          Length = 1914

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 3  WFFPFSDSWKKRACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLDV 55
          W +P+S+  K+R CRYLLQ YLG F +E L+LDQLS+DLY G+ ++ D+ L+ 
Sbjct: 4  WLWPWSNCVKERVCRYLLQHYLGHFFQEHLSLDQLSLDLYKGSVALRDIHLET 56


>sp|Q2TAZ0|ATG2A_HUMAN Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A
          PE=1 SV=3
          Length = 1938

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 3  WFFPFSDSWKKRACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLDV 55
          W +P+S+  K+R CRYLL  YLG F +E L+LDQLS+DLY G+ ++ D+ L++
Sbjct: 4  WLWPWSNCVKERVCRYLLHHYLGHFFQEHLSLDQLSLDLYKGSVALRDIHLEI 56


>sp|Q4PFE7|ATG2_USTMA Autophagy-related protein 2 OS=Ustilago maydis (strain 521 / FGSC
          9021) GN=ATG2 PE=3 SV=1
          Length = 2081

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5  FPFSDSWKKRACRYLLQRYLGQFLE-EKLTLDQLSVDLYNGTGSVSDVCLDVQ 56
          F  S + +KR   YLL+R LG  ++  +L L+Q+   + +G   V +V LD Q
Sbjct: 21 FSLSANLQKRILSYLLKRTLGHLVDGGQLDLEQIDAGIGSGRIEVRNVQLDAQ 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,404,206
Number of Sequences: 539616
Number of extensions: 1275330
Number of successful extensions: 2537
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2532
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)