Query psy8817
Match_columns 93
No_of_seqs 102 out of 139
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:00:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkq_A Immunoglobulin lambda-l 75.0 0.94 3.2E-05 23.5 0.8 14 9-22 3-16 (26)
2 3ttz_A DNA gyrase subunit B; p 30.3 41 0.0014 23.8 3.1 42 9-50 14-69 (198)
3 4ec6_A Putative uncharacterize 26.4 42 0.0014 24.1 2.5 26 13-38 58-96 (161)
4 3ktb_A Arsenical resistance op 25.7 35 0.0012 22.6 1.9 23 56-78 63-85 (106)
5 3bs5_B Connector enhancer of k 23.6 25 0.00084 20.9 0.8 28 8-35 5-38 (80)
6 3gr5_A ESCC; secretin, type II 23.1 83 0.0028 21.3 3.5 37 46-85 18-54 (156)
7 3kgk_A Arsenical resistance op 22.5 36 0.0012 22.7 1.5 44 45-89 42-92 (110)
8 2y3m_A Emhofq, protein transpo 20.9 73 0.0025 21.2 2.8 39 45-86 9-47 (175)
9 2gle_A Neurabin-1; SAM domain, 19.2 26 0.0009 20.5 0.2 26 12-37 9-38 (74)
10 2ean_A Connector enhancer of k 18.1 24 0.00082 21.2 -0.2 27 9-35 10-42 (83)
No 1
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=75.01 E-value=0.94 Score=23.47 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHH
Q psy8817 9 DSWKKRACRYLLQR 22 (93)
Q Consensus 9 ~~~~kR~c~~lL~r 22 (93)
.+++.||-||+|||
T Consensus 3 sslrsrwgrfllqr 16 (26)
T 2lkq_A 3 SSLRSRWGRFLLQR 16 (26)
T ss_dssp TTTTTHHHHHTHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 47889999999998
No 2
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=30.32 E-value=41 Score=23.81 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=33.7
Q ss_pred hhHHHHHHHHH-------HHHHhhhhhhccCC------ccCceeeee-cceEEEEc
Q psy8817 9 DSWKKRACRYL-------LQRYLGQFLEEKLT------LDQLSVDLY-NGTGSVSD 50 (93)
Q Consensus 9 ~~~~kR~c~~l-------L~ryLG~fl~~~L~------ldQL~v~L~-~G~v~L~n 50 (93)
++++||.--|+ |.+.+-.-++|-+| .++++|.+. .|.++++|
T Consensus 14 e~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~D 69 (198)
T 3ttz_A 14 EAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTD 69 (198)
T ss_dssp HHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEE
T ss_pred HHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEE
Confidence 67888988886 78888888888777 678888887 46788876
No 3
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=26.41 E-value=42 Score=24.05 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH-------------hhhhhhccCCccCce
Q psy8817 13 KRACRYLLQRY-------------LGQFLEEKLTLDQLS 38 (93)
Q Consensus 13 kR~c~~lL~ry-------------LG~fl~~~L~ldQL~ 38 (93)
--+|||.|..| |+.|+.+++++++..
T Consensus 58 DvF~RyFLs~YfS~~~~~~~~q~~LkdFvS~kl~l~~~k 96 (161)
T 4ec6_A 58 DTFGRYFLTYYFSQEKNQENYQSSLRTYVSEKVDISDWK 96 (161)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHGGGBCTTSCCTTCC
T ss_pred eeeehhhhHHHhCCChhhhhHHHHHHHHhhhccchhhhc
Confidence 35788888655 688998779988873
No 4
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=25.71 E-value=35 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.5
Q ss_pred HhHhhhcccCCCCcceEEeecee
Q psy8817 56 QLEEEGMSLSSSKISWTVSRGEA 78 (93)
Q Consensus 56 ALnell~~~~~~~lP~~v~~G~I 78 (93)
+++++++.-+...+|+.+++|.|
T Consensus 63 ~V~~~L~~~G~~~LP~~~VDGev 85 (106)
T 3ktb_A 63 TVNDFLQKHGADALPITLVDGEI 85 (106)
T ss_dssp HHHHHHHTTCGGGCSEEEETTEE
T ss_pred HHHHHHHHcCcccCCEEEECCEE
Confidence 57788887777899999999977
No 5
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=23.59 E-value=25 Score=20.91 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=17.8
Q ss_pred chhHHHHHHHHH------HHHHhhhhhhccCCcc
Q psy8817 8 SDSWKKRACRYL------LQRYLGQFLEEKLTLD 35 (93)
Q Consensus 8 ~~~~~kR~c~~l------L~ryLG~fl~~~L~ld 35 (93)
+++--.-+|.|+ +.+|...|.++++|-+
T Consensus 5 ~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~ 38 (80)
T 3bs5_B 5 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGD 38 (80)
T ss_dssp GGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHH
T ss_pred ccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHH
Confidence 333445666666 5777778888777643
No 6
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=23.15 E-value=83 Score=21.31 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=28.9
Q ss_pred EEEEccchhhHhHhhhcccCCCCcceEEeeceeeeEEEcc
Q psy8817 46 GSVSDVCLDVQLEEEGMSLSSSKISWTVSRGEAAEWMLKS 85 (93)
Q Consensus 46 v~L~nL~L~~ALnell~~~~~~~lP~~v~~G~IG~l~lki 85 (93)
...+|.++...|+++-+. .++|+.+..+--|++++++
T Consensus 18 ~~~~~~~v~~vL~~lA~~---~g~nivvs~~V~G~vs~rl 54 (156)
T 3gr5_A 18 IITKSSPVRAILNDFAAN---YSIPVFISSSVNDDFSGEI 54 (156)
T ss_dssp EEEEEEEHHHHHHHHHHH---TTCCEEECTTCCCEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHh---hCCCEEECCCcceEEEEEe
Confidence 456888888877766443 3799999999999999885
No 7
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=22.46 E-value=36 Score=22.72 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=28.2
Q ss_pred eEEEEccchhh-------HhHhhhcccCCCCcceEEeeceeeeEEEccCCCc
Q psy8817 45 TGSVSDVCLDV-------QLEEEGMSLSSSKISWTVSRGEAAEWMLKSPSLK 89 (93)
Q Consensus 45 ~v~L~nL~L~~-------ALnell~~~~~~~lP~~v~~G~IG~l~lkiP~~~ 89 (93)
+|+--||.=+. +++++++.-+...+|+.+++|.|=+ .=+.|+..
T Consensus 42 ~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~VDGevv~-~G~yPt~e 92 (110)
T 3kgk_A 42 QIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLLDGETVM-AGRYPKRA 92 (110)
T ss_dssp CEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEETTEEEE-ESSCCCHH
T ss_pred eEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEE-eccCCCHH
Confidence 45555554332 5777877767778999999998732 23445543
No 8
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=20.89 E-value=73 Score=21.18 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=23.1
Q ss_pred eEEEEccchhhHhHhhhcccCCCCcceEEeeceeeeEEEccC
Q psy8817 45 TGSVSDVCLDVQLEEEGMSLSSSKISWTVSRGEAAEWMLKSP 86 (93)
Q Consensus 45 ~v~L~nL~L~~ALnell~~~~~~~lP~~v~~G~IG~l~lkiP 86 (93)
++.++|.+++..++.+-+ ..++++.+-.+.-|++++++.
T Consensus 9 sl~f~~~~i~~vl~~la~---~~g~nivi~~~V~G~vTl~l~ 47 (175)
T 2y3m_A 9 SIRLKQAPLVPTLQQLAL---AHNTNLIIDDELQGTVSLQLE 47 (175)
T ss_dssp EEEEEECCHHHHHHHSCC---CTTCEEEEC-----CCEEEEE
T ss_pred EEEEcCCCHHHHHHHHHH---HhCCCEEeCCCCceEEEEEEc
Confidence 466778888886666532 347888887777788777653
No 9
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=19.21 E-value=26 Score=20.46 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=17.1
Q ss_pred HHHHHHHH----HHHHhhhhhhccCCccCc
Q psy8817 12 KKRACRYL----LQRYLGQFLEEKLTLDQL 37 (93)
Q Consensus 12 ~kR~c~~l----L~ryLG~fl~~~L~ldQL 37 (93)
-.-+|.|+ +.+|...|.++++|-+.|
T Consensus 9 ~~~V~~WL~~~gl~~y~~~F~~~~i~g~~L 38 (74)
T 2gle_A 9 VQQVSHWLVGLSLDQYVSEFSAQNISGEQL 38 (74)
T ss_dssp SGGGHHHHHHTTTHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHcCCCHHHH
Confidence 34556666 677888888887775443
No 10
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.06 E-value=24 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=17.7
Q ss_pred hhHHHHHHHHH------HHHHhhhhhhccCCcc
Q psy8817 9 DSWKKRACRYL------LQRYLGQFLEEKLTLD 35 (93)
Q Consensus 9 ~~~~kR~c~~l------L~ryLG~fl~~~L~ld 35 (93)
++--..+|.|+ +.+|...|.++++|-+
T Consensus 10 ~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~ 42 (83)
T 2ean_A 10 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGD 42 (83)
T ss_dssp GCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHH
Confidence 33445566666 5678888888877643
Done!