Query psy8817
Match_columns 93
No_of_seqs 102 out of 139
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 20:00:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8817.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8817hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sh5a1 a.40.1.1 (A:8-127) Act 23.0 27 0.0019 20.8 2.5 37 9-45 3-41 (120)
2 d2ia9a1 d.366.1.1 (A:1-92) Put 22.4 16 0.0012 22.1 1.3 20 71-91 34-53 (92)
3 d2i9xa1 d.366.1.1 (A:1-84) Put 20.8 18 0.0013 21.5 1.3 19 71-90 34-52 (84)
4 d1zyba1 a.4.5.4 (A:148-220) Pr 18.9 19 0.0014 20.0 1.1 15 8-22 2-16 (73)
5 d1a5ta2 c.37.1.20 (A:1-207) de 15.9 17 0.0013 23.3 0.4 20 1-21 1-20 (207)
6 d2qifa1 d.58.17.1 (A:1-69) Cop 11.4 1.1E+02 0.0081 15.9 3.1 45 14-62 14-61 (69)
7 d2j0pa1 e.62.1.1 (A:4-341) Hem 10.3 40 0.0029 24.6 0.9 31 53-83 221-252 (338)
8 d2f3na1 a.60.1.2 (A:2-65) Sh3 10.0 80 0.0059 16.2 2.0 18 20-37 18-35 (64)
9 d1kvja_ d.58.17.1 (A:) Menkes 9.6 1.5E+02 0.011 15.9 4.3 54 14-74 20-76 (79)
10 d1mdba_ e.23.1.1 (A:) Dihydrox 9.3 57 0.0041 22.2 1.4 13 2-14 3-15 (536)
No 1
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.01 E-value=27 Score=20.80 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHhhh--hhhccCCccCceeeeecce
Q psy8817 9 DSWKKRACRYLLQRYLGQ--FLEEKLTLDQLSVDLYNGT 45 (93)
Q Consensus 9 ~~~~kR~c~~lL~ryLG~--fl~~~L~ldQL~v~L~~G~ 45 (93)
+.+|+|.+.-++|.+|.+ +...+...+.|.-++..|.
T Consensus 3 e~~Q~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~ 41 (120)
T d1sh5a1 3 DRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGH 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSH
T ss_pred HHHHHHHHHHHHHHHccccccccCCCCcchHHHHhccHH
Confidence 457899988888988865 3333344555655666653
No 2
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]}
Probab=22.41 E-value=16 Score=22.10 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.0
Q ss_pred eEEeeceeeeEEEccCCCccc
Q psy8817 71 WTVSRGEAAEWMLKSPSLKDL 91 (93)
Q Consensus 71 ~~v~~G~IG~l~lkiP~~~~~ 91 (93)
++|++|.=| +.+.+||.++-
T Consensus 34 ikVieg~~G-lFVaMPs~k~~ 53 (92)
T d2ia9a1 34 IRVIDGNNG-LFVAMPSKRTP 53 (92)
T ss_dssp EEEEEETTE-EEEECCEEECT
T ss_pred EEEEECCCC-cEEECCCcCCC
Confidence 489999987 99999997753
No 3
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=20.84 E-value=18 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=16.5
Q ss_pred eEEeeceeeeEEEccCCCcc
Q psy8817 71 WTVSRGEAAEWMLKSPSLKD 90 (93)
Q Consensus 71 ~~v~~G~IG~l~lkiP~~~~ 90 (93)
++|++|.=| +.+.+||.+.
T Consensus 34 ikvieg~~G-lFVamPs~k~ 52 (84)
T d2i9xa1 34 LRVIEGNSG-LFVAMPSKRT 52 (84)
T ss_dssp EEEEEETTE-EEEECCEEEC
T ss_pred EEEEECCCC-cEEECCCcCC
Confidence 489999987 9999999764
No 4
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=18.92 E-value=19 Score=19.98 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHH
Q psy8817 8 SDSWKKRACRYLLQR 22 (93)
Q Consensus 8 ~~~~~kR~c~~lL~r 22 (93)
|.++..|+++|++.+
T Consensus 2 T~dv~~Rla~~Ll~~ 16 (73)
T d1zyba1 2 TLDLKSKIIRFFLSH 16 (73)
T ss_dssp CCSHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh
Confidence 346889999998764
No 5
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=15.91 E-value=17 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=10.7
Q ss_pred CCccCCCchhHHHHHHHHHHH
Q psy8817 1 MSWFFPFSDSWKKRACRYLLQ 21 (93)
Q Consensus 1 m~w~~~~~~~~~kR~c~~lL~ 21 (93)
|-|| ||=+.+-+++-+.+-+
T Consensus 1 ~~~y-Pw~~~~~~~l~~~~~~ 20 (207)
T d1a5ta2 1 MRWY-PWLRPDFEKLVASYQA 20 (207)
T ss_dssp CCCC-GGGHHHHHHHHHHHHT
T ss_pred CCCC-cccHHHHHHHHHHHHc
Confidence 6675 6655555555444443
No 6
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}
Probab=11.44 E-value=1.1e+02 Score=15.95 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhhhccCCccCceeeeecceEEEE-c-cchhh-HhHhhhc
Q psy8817 14 RACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVS-D-VCLDV-QLEEEGM 62 (93)
Q Consensus 14 R~c~~lL~ryLG~fl~~~L~ldQL~v~L~~G~v~L~-n-L~L~~-ALnell~ 62 (93)
.-|...+.+-|.. +.+ ..+.++++-+|.+.++ | =.++. .+.+.++
T Consensus 14 ~~C~~~Ie~~l~~-~~G---V~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~ 61 (69)
T d2qifa1 14 QHCVKAVETSVGE-LDG---VSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61 (69)
T ss_dssp HHHHHHHHHHHHT-STT---EEEEEEETTTTEEEEEECTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCC---ceEEEEECCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4688888888887 344 3577888888988888 2 22556 6666655
No 7
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia enterocolitica [TaxId: 630]}
Probab=10.29 E-value=40 Score=24.62 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=21.5
Q ss_pred hhh-HhHhhhcccCCCCcceEEeeceeeeEEE
Q psy8817 53 LDV-QLEEEGMSLSSSKISWTVSRGEAAEWML 83 (93)
Q Consensus 53 L~~-ALnell~~~~~~~lP~~v~~G~IG~l~l 83 (93)
++. |+.++++..++.++|+++--|--|.+.+
T Consensus 221 v~~~a~~~lL~~aa~~~~pIMiFVGN~GciQI 252 (338)
T d2j0pa1 221 VDNSSLTQLLNIAQQEQNEIMIFVGNRGCVQI 252 (338)
T ss_dssp ECTTHHHHHHHHHHHHCCCEEEEEECSSEEEE
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEcCCceEEE
Confidence 344 5666666556669999998887777654
No 8
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=9.96 E-value=80 Score=16.23 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=13.1
Q ss_pred HHHHhhhhhhccCCccCc
Q psy8817 20 LQRYLGQFLEEKLTLDQL 37 (93)
Q Consensus 20 L~ryLG~fl~~~L~ldQL 37 (93)
+.+|...|.++.+|-++|
T Consensus 18 l~~y~~~F~~~~i~g~~L 35 (64)
T d2f3na1 18 LGEHRDRFEDHEIEGAHL 35 (64)
T ss_dssp CGGGHHHHHHTTCCGGGG
T ss_pred CHHHHHHHHHCCCcHHHh
Confidence 677888888887775554
No 9
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=1.5e+02 Score=15.90 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhhhccCCccCceeeeecceEEEE--ccchhh-HhHhhhcccCCCCcceEEe
Q psy8817 14 RACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVS--DVCLDV-QLEEEGMSLSSSKISWTVS 74 (93)
Q Consensus 14 R~c~~lL~ryLG~fl~~~L~ldQL~v~L~~G~v~L~--nL~L~~-ALnell~~~~~~~lP~~v~ 74 (93)
-.|...+++.|... . ...+.++++-.|++.++ .=.++. +|.+.+++. |.+..+.
T Consensus 20 ~~C~~~ie~~l~~~-~---gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~---GY~~~~~ 76 (79)
T d1kvja_ 20 NSCVWTIEQQIGKV-N---GVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM---GFDAVIH 76 (79)
T ss_dssp THHHHHHHHHHHTT-T---TCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH---TCEEEEC
T ss_pred HHHHHHHHHHHhcC-C---CceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhc---CCCcEeC
Confidence 35888888877642 2 34678889999999987 233565 666665532 5665554
No 10
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=9.32 E-value=57 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.3
Q ss_pred CccCCCchhHHHH
Q psy8817 2 SWFFPFSDSWKKR 14 (93)
Q Consensus 2 ~w~~~~~~~~~kR 14 (93)
-||.|||++..+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (536)
T d1mdba_ 3 KGFTPWPDELAET 15 (536)
T ss_dssp TTCCCCCHHHHHH
T ss_pred CCCCCCCHHHHHH
Confidence 4899999877765
Done!