RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8817
         (93 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.040
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 20  LQRYLGQFLEEKLTLDQLSVDLYNG------TGSVSDVC-LDVQLEEE--GMSLSSSKI 69
           +Q Y+ +         Q+ + L NG      +G    +  L++ L +      L  S+I
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407


>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
           PEST defense, family GH1, hydrolase; 1.9A {Sorghum
           bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
          Length = 565

 Score = 26.4 bits (59), Expect = 1.3
 Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
           +    P+++++  ++A    + + LG FLE
Sbjct: 311 VFGRVPYTNTFLDQQAQERSMDKCLGWFLE 340


>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
           {Rauvolfia serpentina} PDB: 2jf6_A
          Length = 532

 Score = 26.4 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
             W  P SD      A +  L   LG FLE
Sbjct: 274 SMWMEPLSDVQADIDAQKRALDFMLGWFLE 303


>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
           PEST defense, family GH1, hydrolase, chloroplast,
           transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
           SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
           1e1e_A 1e1f_A* 1h49_A* 1hxj_A
          Length = 512

 Score = 26.0 bits (58), Expect = 1.8
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
           +    P+  S+  K+A        LG FLE
Sbjct: 262 VMGRVPYGTSFLDKQAEERSWDINLGWFLE 291


>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
           aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
           3aiw_A*
          Length = 565

 Score = 26.1 bits (58), Expect = 1.8
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
           +  + P+ DS+   +A    +   +G FLE
Sbjct: 308 VMGYEPYQDSFLDDQARERSIDYNMGWFLE 337


>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
           LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
           3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
           2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
          Length = 481

 Score = 25.9 bits (58), Expect = 1.9
 Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
            +W+   S+S + + A +     ++G +L+
Sbjct: 249 FNWYEALSNSTEDQAAAQRARDFHIGWYLD 278


>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
           BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
           3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
           3vij_A* 3vik_A* 3vil_A*
          Length = 487

 Score = 25.6 bits (57), Expect = 2.3
 Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
           ++W  P ++S + + +C    Q  LG +  
Sbjct: 235 INWCEPATNSAEDRASCENYQQFNLGLYAH 264


>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
           hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
           3ptq_A*
          Length = 505

 Score = 25.6 bits (57), Expect = 2.5
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 1   MSWFFPFSDSWK-KRACRYLLQRYLGQFLE 29
             WF PFS S     A +  +    G F++
Sbjct: 270 SHWFVPFSRSKSNNDAAKRAIDFMFGWFMD 299


>3fro_A GLGA glycogen synthase; glycosyltransferase family,
           UDP/ADP-glucose-glycogen synthas rossman folds,
           transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB:
           2bis_A* 3l01_A*
          Length = 439

 Score = 25.2 bits (56), Expect = 3.5
 Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 10/44 (22%)

Query: 6   PFSDSWKKRACRYLLQRYLGQFLEEK--------LTLDQLSVDL 41
               +  +   +  L    G  ++E             Q  VD+
Sbjct: 228 ESYLTGSRDERKKSLLSKFG--MDEGVTFMFIGRFDRGQKGVDV 269


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0808    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,451,985
Number of extensions: 69537
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 13
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)