RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8817
         (93 letters)



>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
          (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score = 24.4 bits (52), Expect = 2.5
 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 15 ACRYLLQRYLGQFLEEKLTLDQLSVDLYNGTGSVSDVCLDVQ 56
          A R       G+F  EK++ ++                 D Q
Sbjct: 46 AARIYKGGLTGKFEREKISWEEFDF-----AALSKTYNTDKQ 82


>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
          Thermococcus litoralis [TaxId: 2265]}
          Length = 451

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 69 ISWTVSRGEAAEWMLKSPSLKDLER 93
          I W++ RG+AAE ++ S  +++  R
Sbjct: 74 ILWSIKRGKAAELLVVSREVREYMR 98


>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 333

 Score = 23.5 bits (50), Expect = 5.0
 Identities = 3/19 (15%), Positives = 11/19 (57%)

Query: 73  VSRGEAAEWMLKSPSLKDL 91
           + +G+A   M+ + ++  +
Sbjct: 279 IRKGQAVTLMMDATNMPAV 297


>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 279

 Score = 23.3 bits (50), Expect = 6.3
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 6  PFSDSWKKRACRYLLQR 22
          P    +++   RYL   
Sbjct: 19 PLPAGYREEIVRYLRSV 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,306
Number of extensions: 14137
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)