BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy882
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFD1|RBM45_RAT RNA-binding protein 45 OS=Rattus norvegicus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG+IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPNDTKPIKVFIA 104
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K S+AA+A+E
Sbjct: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180
Query: 83 MNGEF 87
+ F
Sbjct: 181 CDRSF 185
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 99 IAAKLEFKEGYRG-----GQKISVQYTSPQSAAYARDKFHGFAYPPG 140
I LE+ E +R G + VQY + SA YA+ K HGF YPPG
Sbjct: 269 IVPGLEYCEVHRDPYLNYGHGV-VQYFNVASAVYAQYKLHGFQYPPG 314
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + ++KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPR-EVSKKRQR 474
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 18 DEPPHSRLFILCGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+ P RLFI+ + D L F FGN+ E+ V +N G Y++++ A
Sbjct: 387 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVG------YVKYADRMSA 440
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIA 100
A+ ++G+ L + +KV++A
Sbjct: 441 NDAITTLHGKIL--NGVRLKVMLA 462
>sp|Q8IUH3|RBM45_HUMAN RNA-binding protein 45 OS=Homo sapiens GN=RBM45 PE=2 SV=1
Length = 476
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K E LR+ FSPFG+IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPNDTKPIKVFIA 104
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K S+AA+A+E
Sbjct: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180
Query: 83 MNGEF 87
+ F
Sbjct: 181 CDRSF 185
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 291 VQYFNVASAIYAKYKLHGFQYPPG 314
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + N KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPREESN-KRQR 474
>sp|Q8BHN5|RBM45_MOUSE RNA-binding protein 45 OS=Mus musculus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG+IQ+I V+D++T ESKGVA+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L P+ +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPSDTKPIKVFIA 104
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K S+AA+A+E
Sbjct: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180
Query: 83 MNGEF 87
+ F
Sbjct: 181 CDRSF 185
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 74/185 (40%), Gaps = 52/185 (28%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPGIPMVV--VPDFS--YGLPRNGASALGGNAALSVVDS 172
VQY + SA YA+ K HGF YPPG +VV + D S L R A+ + S+V S
Sbjct: 291 VQYFNVASAIYAKYKLHGFQYPPGNRIVVSFLDDGSNMTELIRKMATQMVAAQLASMVWS 350
Query: 173 KGALQSLTK----ALAQATSLLRSAGLST-------DSRFISRL---------------- 205
+ Q + A +QA + L + ++ RL
Sbjct: 351 TTSQQQFLQYGGNAASQAPQIQTDVVLPSCKKKAPPETPVKERLFVVFNPHPLPLDVLED 410
Query: 206 ---RLDDFIYYILV-----------------EFSQTLHGAEMYGSRLKVMEADPPKGDRN 245
R + I LV E TLHG + G RLKVM AD P+ + +
Sbjct: 411 IFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSPR-EES 469
Query: 246 RKRQR 250
+KRQR
Sbjct: 470 KKRQR 474
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 18 DEPPHSRLFILCGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+ P RLF++ + D L F FGN+ E+ V +N G Y++++ A
Sbjct: 387 ETPVKERLFVVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVG------YVKYADRKSA 440
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIA 100
+A+ ++G+ L + +KV++A
Sbjct: 441 NEAITTLHGKIL--NGVRLKVMLA 462
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG+I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 186 SSEPITVKFAA 196
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 263 GQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNG 318
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDR-----------NTGESKGVAYIRFSKTSEAAKA 79
+++T+D+LR FS G ++ + ++D+ + G S G ++ + +A +A
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERA 88
Query: 80 VEEMNGEFLPNHSKPIKVLIA 100
+ +NG L SK IKV A
Sbjct: 89 INTLNG--LRLQSKTIKVSFA 107
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG+I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 252 GQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNG 307
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG--LRL 86
Query: 91 HSKPIKVLIA 100
SK IKV A
Sbjct: 87 QSKTIKVSFA 96
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 252 GQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNG 307
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG--LRL 86
Query: 91 HSKPIKVLIA 100
SK IKV +A
Sbjct: 87 QSKTIKVSVA 96
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG--LRL 86
Query: 91 HSKPIKV 97
SK IKV
Sbjct: 87 QSKTIKV 93
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG--LRL 86
Query: 91 HSKPIKV 97
SK IKV
Sbjct: 87 QSKTIKV 93
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 37 DLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
DL + FS G ++++R + DRN+ SKG+AY+ F S A+
Sbjct: 168 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 211
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 37 DLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
DL + FS G ++++R + DRN+ SKG+AY+ F S A+
Sbjct: 168 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 211
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 37 DLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
DL + FS G ++++R + DRN+ SKG+AY+ F S A+
Sbjct: 168 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 211
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI + +E L FS FG I E+ +KDR T +S+G A++ + +A A E
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFK 106
MNG+ L KPIKV A K +F+
Sbjct: 69 MNGKPL--DGKPIKVEQATKPQFE 90
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+++M G++L
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 172
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 27 ILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+ CG +TE +RQ FSPFG I EIR D KG +++RFS AA A+ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269
Query: 84 NGEFLPNH 91
NG + H
Sbjct: 270 NGTTIEGH 277
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ E L F +G I E+ +KDR T +S+G A+I F ++A AV +MNG+ L
Sbjct: 18 ETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSL--D 75
Query: 92 SKPIKVLIAAKLEFKEGYRG 111
K IKV A K F+ G RG
Sbjct: 76 GKAIKVAQATKPAFESGRRG 95
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+++M G++L
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 172
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 5 YRINTHDRSR-EYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTG 60
Y NT S E ++ S + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 248
Query: 61 ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 249 --KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 222 ATEPITVKFA 231
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 316 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 7 INTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT-GESKG 64
IN N E + L + +++T+++L+ F G I+ + V+D+ T G+S G
Sbjct: 50 INCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLG 109
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97
++ + +A KA+ +NG L +K IKV
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRL--QTKTIKV 140
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 222 ATEPITVKFA 231
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 302 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 355
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++L+ F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 76 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 133
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 134 QTKTIKV 140
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++L+ F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 48 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 105
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 106 QTKTIKV 112
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++L+ F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 48 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 105
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 106 QTKTIKV 112
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 287 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++L+ F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 48 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 105
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 106 QTKTIKV 112
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 286 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++L+ F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 48 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 105
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 106 QTKTIKV 112
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
M+R ++ D D +LF+ + GK T++D+R+ F PFGNI E ++ +
Sbjct: 77 MNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD- 131
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
G SKG A+++F +EA A+ ++G LP S + V+ A E + G R Q+++ Q
Sbjct: 132 GTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSL-VVKFADTEKERGLRRMQQVANQ 190
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LFI +++ E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
++ T+ ++ Q F PFGN+ + DR T +SK ++ F A A++ MNG
Sbjct: 386 QEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNG 440
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 273 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 331
Query: 92 SKPIKV 97
+P++V
Sbjct: 332 -RPMRV 336
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 DLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
DL FS G ++++R + DRN+ SKG+AY+ F + A+
Sbjct: 181 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 224
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+ ++ LR+ FSPFG I + + + G SKG ++ FS EA KAV EMNG + +
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 93 KPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147
KP+ V +A + E ++ Y ++ +Y Q A R + A P G M VP
Sbjct: 361 KPLYVALAQRKEERQAY-----LTNEYM--QRMASVRAVPNQRAPPSGYFMTAVP 408
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G I IR +D T S AY+ F T +A A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVI--K 78
Query: 92 SKPIKVLIAAK 102
KP++++ + +
Sbjct: 79 GKPVRIMWSQR 89
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
G+D+ ++ L+ F FG ++ + D +G+SKG ++ F + +A KAV+EMNG+ L
Sbjct: 199 GEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
K + L S FGNI V D N SKG ++ F A +A+++MNG L
Sbjct: 108 KSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLL 163
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 27 ILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+ CG +T+ +RQ FSPFG I EIR + KG +++RFS AA A+ +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277
Query: 84 NGEFLPNH 91
NG + H
Sbjct: 278 NGTTIEGH 285
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 146
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 147 NKLDAENAIVHMGGQWL 163
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 27 ILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+ CG +T+ +RQ FSPFG I EIR + KG +++RFS AA A+ +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260
Query: 84 NGEFLPNH 91
NG + H
Sbjct: 261 NGTTIEGH 268
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+D+L + F +GNI + ++D+ TG+ +GVA++RF+K EA +A+ +N
Sbjct: 180 RTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEG 239
Query: 91 HSKPIKVLIA 100
S+P+ V +A
Sbjct: 240 ASQPLTVRLA 249
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+D+T+ +L F G I R +KD TG S G A++ F+ +A A++ +NG + N
Sbjct: 94 QDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRN 153
Query: 91 HSKPIKVLIA 100
K +KV A
Sbjct: 154 --KRLKVSYA 161
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+D+L + F +GNI + ++D+ TG +GVA++RF+K EA +A+ +N
Sbjct: 197 RTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEG 256
Query: 91 HSKPIKVLIA 100
S+P+ V +A
Sbjct: 257 ASQPLTVRLA 266
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+D+T+ +L F G I R +KD TG S G A++ F+ +A A++ +NG + N
Sbjct: 111 QDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRN 170
Query: 91 HSKPIKVLIA 100
K +KV A
Sbjct: 171 --KRLKVSYA 178
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+NTG+SKG A+I F + +AA+A+ ++G
Sbjct: 221 EDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSG 275
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI + E L F +G I E+ +KDR T +S+G A++ F ++A A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
MNG+ L K IKV A K F+ G RG
Sbjct: 69 MNGKSL--DGKAIKVEQATKPSFESGRRG 95
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L++ D +DD LR FSP+GNI + + D G SKG ++ F+ SEA AV E+
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 348 NGRVV--GSKPLYVALAQRKEERKAHLASQ 375
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+DV E L FS G + IR +D T S G AY+ F + ++A +A++ MN + + N
Sbjct: 11 QDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRN 70
Query: 91 HSKPIKVLIAAK 102
KPI+++ + +
Sbjct: 71 --KPIRIMWSQR 80
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
+D ++ L++ F P+G I + V + G+SKG ++ F T A AV+ +NG+
Sbjct: 192 EDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEAAEAAVQALNGK 246
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 42 FSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
FS FGNI + D G SKG ++ F A +++++NG L
Sbjct: 110 FSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLL 155
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI + E L F +G I E+ +KDR T +S+G A++ F ++A A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
MNG+ L K IKV A K F+ G RG
Sbjct: 69 MNGKSL--DGKAIKVEQATKPSFESGRRG 95
>sp|O57406|CEL1A_XENLA CUGBP Elav-like family member 1-A OS=Xenopus laevis GN=cugbp1-a
PE=1 SV=1
Length = 489
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 15 EYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
E N+ +LFI + K+ E+D+R FSPFG I+E R ++ + G S+G A++ F+
Sbjct: 100 EKNNAVEDRKLFIGMVSKNCNENDIRAMFSPFGQIEECRILRGPD-GMSRGCAFVTFTTR 158
Query: 74 SEAAKAVEEMN-GEFLPNHSKPIKVLIAAKLEFKEGYR 110
S A A++ M+ + + S PI V A + KE R
Sbjct: 159 SMAQMAIKSMHQAQTMEGCSSPIVVKFADTQKDKEQKR 196
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAK 78
P + LFI ++ + DL Q F PFGN+ + D+ T SK ++ + A
Sbjct: 401 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSSKVFIDKQTNLSKCFGFVSYDNPVSAQA 460
Query: 79 AVEEMNG 85
A++ MNG
Sbjct: 461 AIQSMNG 467
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 13 SREYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDR--NTGESKGVAY 67
+ ++ D P + + G + +E +LR+ F +G + EI ++DR N +SKG +
Sbjct: 4 TMDHPDHPDPDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 63
Query: 68 IRFSKTSEAAKAVEEM-NGEFLPNHSKPIKV 97
I F A +A + N + LP PI++
Sbjct: 64 ITFYTRKAALEAQNALHNMKVLPGMHHPIQM 94
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
M+R ++ D D +LF+ + GK T++D+R+ F PFG I E ++ +
Sbjct: 77 MNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD- 131
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
G SKG A+++F +EA A+ ++ LP S + V+ A E + G R Q+++ Q
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSL-VVKFADTEKERGLRRMQQVATQ 190
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LF+ + + E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
++ T+ ++ Q F PFG++ + DR T +SK ++ F + A A++ MNG
Sbjct: 389 QEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG 443
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 23/150 (15%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L++ D +DD LR F FG I + ++D ++G S+G ++ +S EA KAV EM
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEM 390
Query: 84 NGEFLPNHSKPIKVLIAAK-------LEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFA 136
NG+ + +KP+ V +A + LE + R Q++ P Y +G
Sbjct: 391 NGKMI--GTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYG-- 446
Query: 137 YP---------PGIPMVVVPDFSY-GLPRN 156
YP PG+P V P Y G P+N
Sbjct: 447 YPPMPGYGQPMPGMPPVRGPMMGYPGAPQN 476
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 38 LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97
L F+ FG+I + D N G+S+G A++ +S A A++ +NG L + KV
Sbjct: 150 LHDTFAAFGDILSCKVGTDEN-GKSRGFAFVHYSTGEAADAAIKAVNGMLLNDK----KV 204
Query: 98 LIAAKLEFKEGYRGGQKISVQYTS 121
+ + KE +++ Q+T+
Sbjct: 205 YVGHHVGKKERLSKVEELRAQFTN 228
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
VTE L + F+ G + IR +D T S G AY+ + ++ +A+E +N + S
Sbjct: 57 VTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQS 116
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 23/150 (15%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L++ D +DD LR F FG I + ++D ++G S+G ++ +S EA KAV EM
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEM 390
Query: 84 NGEFLPNHSKPIKVLIAAK-------LEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFA 136
NG+ + +KP+ V +A + LE + R Q++ P Y +G
Sbjct: 391 NGKMI--GTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYG-- 446
Query: 137 YP---------PGIPMVVVPDFSY-GLPRN 156
YP PG+P V P Y G P+N
Sbjct: 447 YPPMPGYGQPMPGMPPVRGPMMGYPGAPQN 476
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 38 LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97
L F+ FG+I + D N G+S+G A++ +S A A++ +NG L + KV
Sbjct: 150 LHDTFAAFGDILSCKVGTDEN-GKSRGFAFVHYSTGEAADAAIKAVNGMLLNDK----KV 204
Query: 98 LIAAKLEFKEGYRGGQKISVQYTS 121
+ + KE +++ Q+T+
Sbjct: 205 YVGHHVGKKERLSKVEELRAQFTN 228
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
VTE L + F+ G + IR +D T S G AY+ + ++ +A+E +N + S
Sbjct: 57 VTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQS 116
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
M+R ++ D D +LF+ + GK T++D+R+ F PFG I E ++ +
Sbjct: 77 MNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD- 131
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
G SKG A+++F +EA A+ ++ LP S + V+ A E + G R Q+++ Q
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSL-VVKFADTEKERGLRRMQQVATQ 190
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LF+ + + E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
++ T+ ++ Q F PFG++ + DR T +SK ++ F + A A++ MNG
Sbjct: 385 QEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG 439
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
V ++ L++ FS +GN+ + + + + G S+G ++ +S EA A++EMNG+ +
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMI--GR 409
Query: 93 KPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGF-AYPPGIPM 143
KP+ V +A + E ++ + Q + Q SP + + GF +PPG PM
Sbjct: 410 KPLYVALAQRKEERQAHL--QSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 459
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 7 INTHDRSR-EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+ DR+R E P + +++ K++T+D+L++ F +G+I +KD+ +G S+
Sbjct: 222 VRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRS 280
Query: 65 VAYIRFSKTSEAAKAVEEMNG 85
++ F AA AVE+MNG
Sbjct: 281 FGFVNFVSPEAAAVAVEKMNG 301
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 38 LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
L + FS FG I + D G SKG +++F K A A++++NG L
Sbjct: 162 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI + E L F +G + E+ +KDR T +S+G A++ F ++A A E
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSP 122
+NG+ L KPIKV A K F R G S + P
Sbjct: 69 LNGKAL--DGKPIKVEQATKPSFSTPSRRGPPTSPRSRGP 106
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 201 ATEPITVKFA 210
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 307 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++ R F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 55 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 112
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 113 QTKTIKV 119
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A A ++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 68 MNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 146 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 206 ATEPITVKFA 215
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 312 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++ R F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 60 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 117
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 118 QTKTIKV 124
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIV--GSKPLYVALAQRKEERKAHLTNQ 381
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D N G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--K 78
Query: 92 SKPIKVLIAAK 102
KPI+++ + +
Sbjct: 79 GKPIRIMWSQR 89
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
K + L FS FGNI + V D N SKG A++ F A KA+E+MNG L
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLL 163
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 300 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++ R F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 48 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 105
Query: 91 HSKPIKV 97
+K IKV
Sbjct: 106 QTKTIKV 112
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A A ++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 68 MNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A A ++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 68 MNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A A ++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 68 MNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A A ++
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 83 MNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 68 MNGKSL--HGKAIKVEQAQKPSFQSGGRRRPPASSRNRSPSGS 108
>sp|A4QNI8|ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1
Length = 400
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 175 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 234
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 235 AAEPITVKFA 244
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 327 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
>sp|Q7SZT7|ELAV4_XENLA ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1
Length = 400
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 175 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 234
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 235 AAEPITVKFA 244
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 327 DSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,128,421
Number of Sequences: 539616
Number of extensions: 3741754
Number of successful extensions: 9913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 8795
Number of HSP's gapped (non-prelim): 1184
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)