Query psy882
Match_columns 253
No_of_seqs 152 out of 2427
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0145|consensus 100.0 2.9E-35 6.3E-40 237.4 18.6 214 22-238 41-356 (360)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.6E-34 7.7E-39 252.9 21.6 219 21-243 2-351 (352)
3 KOG0117|consensus 100.0 5.8E-34 1.3E-38 244.7 16.8 216 19-248 80-338 (506)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 7.2E-30 1.6E-34 234.0 19.9 207 20-240 56-307 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-27 2.5E-32 223.6 16.0 232 1-243 68-366 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 4.3E-27 9.4E-32 219.7 18.0 205 24-243 2-263 (562)
7 KOG0144|consensus 99.9 2.1E-26 4.5E-31 197.5 16.6 135 16-150 28-205 (510)
8 TIGR01622 SF-CC1 splicing fact 99.9 7.6E-25 1.6E-29 199.9 19.7 128 18-149 85-264 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7E-25 1.5E-29 200.9 19.1 211 21-239 1-350 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6E-24 1.3E-28 194.8 20.3 232 2-238 67-478 (481)
11 KOG0148|consensus 99.9 4.5E-24 9.7E-29 173.5 13.2 143 4-150 42-237 (321)
12 TIGR01659 sex-lethal sex-letha 99.9 1.9E-23 4.1E-28 182.7 17.8 133 16-151 101-275 (346)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.6E-23 5.6E-28 192.2 18.6 213 16-238 169-500 (509)
14 KOG0127|consensus 99.9 7.1E-23 1.5E-27 180.4 13.9 217 23-243 6-380 (678)
15 KOG0146|consensus 99.9 2.5E-23 5.5E-28 168.9 8.9 236 1-243 1-367 (371)
16 TIGR01645 half-pint poly-U bin 99.9 1.7E-22 3.7E-27 186.0 15.1 128 20-150 105-283 (612)
17 KOG0123|consensus 99.9 4.6E-22 9.9E-27 175.0 11.2 222 2-243 64-351 (369)
18 KOG0148|consensus 99.9 1.5E-21 3.2E-26 158.9 10.2 207 20-239 4-237 (321)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9.2E-21 2E-25 167.4 16.1 98 2-102 72-170 (352)
20 KOG0123|consensus 99.8 1.2E-19 2.6E-24 159.8 15.0 199 23-239 2-245 (369)
21 KOG0145|consensus 99.8 1.5E-19 3.3E-24 146.6 11.1 143 3-149 111-356 (360)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 4.7E-19 1E-23 163.8 15.2 125 21-148 294-499 (509)
23 TIGR01622 SF-CC1 splicing fact 99.8 2.7E-18 5.8E-23 156.8 15.8 80 20-101 184-264 (457)
24 KOG0131|consensus 99.8 8.3E-19 1.8E-23 135.3 10.4 127 21-150 8-176 (203)
25 KOG0124|consensus 99.8 1.6E-19 3.4E-24 152.7 6.9 123 22-147 113-286 (544)
26 KOG0117|consensus 99.8 3.8E-18 8.2E-23 147.6 12.1 133 18-151 160-331 (506)
27 TIGR01648 hnRNP-R-Q heterogene 99.8 8.7E-18 1.9E-22 154.7 15.1 131 20-151 136-307 (578)
28 PLN03134 glycine-rich RNA-bind 99.7 4.3E-17 9.2E-22 125.8 12.0 82 20-103 32-114 (144)
29 KOG0144|consensus 99.7 1E-17 2.3E-22 144.3 8.9 98 2-102 106-205 (510)
30 KOG0109|consensus 99.7 1.6E-16 3.4E-21 130.9 8.8 117 23-150 3-149 (346)
31 KOG0147|consensus 99.7 1.8E-17 4E-22 146.8 3.5 126 18-147 175-354 (549)
32 KOG0110|consensus 99.7 8.6E-16 1.9E-20 139.7 12.7 205 18-239 381-692 (725)
33 TIGR01659 sex-lethal sex-letha 99.6 3.1E-15 6.8E-20 131.1 11.4 100 1-103 175-275 (346)
34 KOG0122|consensus 99.6 3.9E-15 8.4E-20 120.1 9.0 82 20-103 187-269 (270)
35 PF00076 RRM_1: RNA recognitio 99.6 7.2E-15 1.6E-19 99.0 8.9 69 25-96 1-70 (70)
36 KOG0110|consensus 99.6 8.3E-15 1.8E-19 133.4 10.4 126 22-150 515-692 (725)
37 TIGR01645 half-pint poly-U bin 99.6 2.2E-14 4.7E-19 132.7 11.6 80 21-102 203-283 (612)
38 KOG0149|consensus 99.6 7.9E-15 1.7E-19 117.8 6.8 81 19-102 9-90 (247)
39 KOG0121|consensus 99.6 1.3E-14 2.9E-19 106.0 7.2 82 18-101 32-114 (153)
40 KOG0113|consensus 99.5 2.8E-14 6.1E-19 118.1 9.9 83 18-102 97-180 (335)
41 KOG0147|consensus 99.5 3.1E-14 6.6E-19 126.5 10.4 82 19-102 275-357 (549)
42 KOG1190|consensus 99.5 2E-14 4.3E-19 123.5 8.4 122 21-148 27-225 (492)
43 PF14259 RRM_6: RNA recognitio 99.5 1.8E-13 4E-18 92.4 9.1 69 25-96 1-70 (70)
44 KOG0107|consensus 99.5 1E-13 2.2E-18 106.7 7.4 76 21-103 9-85 (195)
45 KOG0127|consensus 99.5 3E-13 6.4E-18 120.1 11.0 78 22-102 117-195 (678)
46 KOG1456|consensus 99.5 6.5E-13 1.4E-17 113.1 12.4 130 15-150 24-198 (494)
47 PLN03120 nucleic acid binding 99.5 5.1E-13 1.1E-17 110.7 10.1 75 22-102 4-79 (260)
48 KOG0111|consensus 99.4 1.3E-13 2.9E-18 109.6 4.9 86 20-107 8-94 (298)
49 KOG0125|consensus 99.4 6.4E-13 1.4E-17 111.4 8.4 79 21-103 95-174 (376)
50 PLN03213 repressor of silencin 99.4 1.1E-12 2.3E-17 115.4 9.7 78 19-102 7-87 (759)
51 KOG0126|consensus 99.4 4.2E-14 9.1E-19 109.4 0.7 80 20-101 33-113 (219)
52 KOG4207|consensus 99.4 4.1E-13 8.9E-18 105.9 6.1 85 16-102 7-92 (256)
53 KOG0131|consensus 99.4 6.3E-13 1.4E-17 102.9 6.0 98 2-103 78-177 (203)
54 KOG4206|consensus 99.4 6E-12 1.3E-16 101.0 11.8 125 19-148 6-219 (221)
55 KOG0114|consensus 99.4 4E-12 8.7E-17 89.7 9.5 77 21-102 17-94 (124)
56 KOG0130|consensus 99.4 1.4E-12 2.9E-17 96.3 7.3 85 16-102 66-151 (170)
57 smart00362 RRM_2 RNA recogniti 99.4 2.6E-12 5.7E-17 85.9 8.2 70 24-97 1-71 (72)
58 KOG4205|consensus 99.4 6.2E-13 1.3E-17 113.8 6.0 126 21-151 5-176 (311)
59 smart00360 RRM RNA recognition 99.3 4.2E-12 9.1E-17 84.5 7.6 70 27-98 1-71 (71)
60 KOG0108|consensus 99.3 2.8E-12 6.1E-17 114.4 8.3 79 23-103 19-98 (435)
61 COG0724 RNA-binding proteins ( 99.3 1.2E-11 2.5E-16 104.1 10.8 78 22-101 115-193 (306)
62 PLN03121 nucleic acid binding 99.3 1.1E-11 2.5E-16 101.2 10.0 76 20-101 3-79 (243)
63 KOG4212|consensus 99.3 4.8E-11 1E-15 103.7 13.9 81 19-102 41-123 (608)
64 KOG0105|consensus 99.3 1.4E-11 3.1E-16 95.7 8.7 123 20-147 4-186 (241)
65 cd00590 RRM RRM (RNA recogniti 99.3 2.8E-11 6.1E-16 81.3 9.3 73 24-99 1-74 (74)
66 KOG1548|consensus 99.3 8E-11 1.7E-15 99.6 13.2 124 21-148 133-349 (382)
67 smart00361 RRM_1 RNA recogniti 99.3 1.9E-11 4.2E-16 82.6 7.2 61 35-97 2-69 (70)
68 PF13893 RRM_5: RNA recognitio 99.3 3E-11 6.5E-16 77.9 7.4 56 38-100 1-56 (56)
69 KOG0415|consensus 99.2 1.7E-11 3.7E-16 103.9 6.8 86 15-102 232-318 (479)
70 KOG4208|consensus 99.2 9.4E-11 2E-15 92.8 8.5 84 18-103 45-130 (214)
71 KOG0124|consensus 99.2 1.5E-10 3.3E-15 98.6 9.5 80 21-102 209-289 (544)
72 KOG0106|consensus 99.2 4.5E-11 9.8E-16 96.7 5.7 114 23-147 2-167 (216)
73 KOG0132|consensus 99.1 1.1E-10 2.3E-15 107.8 8.1 116 21-147 420-541 (894)
74 KOG0146|consensus 99.1 7.2E-11 1.6E-15 96.8 6.1 87 16-104 279-366 (371)
75 KOG0120|consensus 99.1 1.4E-10 3E-15 104.4 8.4 123 22-147 289-488 (500)
76 KOG1190|consensus 99.1 1.9E-09 4.2E-14 93.2 11.9 122 22-150 297-490 (492)
77 KOG0109|consensus 99.0 6.3E-10 1.4E-14 92.3 4.3 108 112-238 36-148 (346)
78 KOG0153|consensus 98.9 5.6E-09 1.2E-13 88.6 7.7 81 15-102 221-302 (377)
79 KOG4211|consensus 98.9 2.7E-08 5.8E-13 88.1 11.7 118 22-147 10-178 (510)
80 KOG1456|consensus 98.8 7.4E-07 1.6E-11 76.7 19.3 216 16-238 114-489 (494)
81 KOG1457|consensus 98.8 4.4E-08 9.6E-13 78.6 10.9 82 21-102 33-117 (284)
82 KOG0120|consensus 98.8 3.8E-08 8.3E-13 88.8 10.7 123 17-149 170-367 (500)
83 KOG4661|consensus 98.7 4E-08 8.6E-13 88.4 8.3 85 19-105 402-487 (940)
84 KOG4212|consensus 98.7 2.9E-08 6.2E-13 86.7 6.8 77 17-100 531-608 (608)
85 KOG4205|consensus 98.7 2.8E-08 6.1E-13 85.4 6.4 82 21-105 96-178 (311)
86 PF04059 RRM_2: RNA recognitio 98.6 4.7E-07 1E-11 64.6 9.2 80 23-102 2-86 (97)
87 KOG0226|consensus 98.6 4.3E-08 9.4E-13 80.1 3.5 79 21-101 189-268 (290)
88 KOG0533|consensus 98.5 3.6E-07 7.9E-12 75.7 8.5 84 19-105 80-164 (243)
89 KOG4660|consensus 98.5 1.1E-07 2.4E-12 85.4 5.2 71 19-96 72-143 (549)
90 PLN03134 glycine-rich RNA-bind 98.5 2.8E-07 6E-12 71.1 6.0 76 166-242 27-115 (144)
91 KOG0111|consensus 98.4 2.5E-07 5.5E-12 74.2 3.7 73 172-244 9-94 (298)
92 KOG0151|consensus 98.4 6.3E-07 1.4E-11 82.7 6.6 82 19-102 171-256 (877)
93 KOG4209|consensus 98.4 7.6E-07 1.6E-11 73.8 6.3 83 17-102 96-179 (231)
94 KOG4454|consensus 98.4 2.2E-07 4.8E-12 74.5 2.5 113 21-137 8-150 (267)
95 KOG0116|consensus 98.3 1.6E-06 3.4E-11 77.5 7.2 79 21-102 287-366 (419)
96 PF13893 RRM_5: RNA recognitio 98.3 1.5E-06 3.3E-11 55.7 4.3 36 112-148 21-56 (56)
97 smart00361 RRM_1 RNA recogniti 98.0 6.3E-06 1.4E-10 55.4 3.9 34 111-145 36-69 (70)
98 KOG4206|consensus 98.0 2.9E-05 6.3E-10 62.8 7.7 79 17-101 141-220 (221)
99 KOG4211|consensus 98.0 2.5E-05 5.5E-10 69.6 7.4 93 8-104 89-183 (510)
100 KOG0106|consensus 97.9 3.2E-05 6.9E-10 62.9 5.8 124 111-238 34-169 (216)
101 KOG4207|consensus 97.8 8.7E-06 1.9E-10 64.9 1.6 69 170-238 10-91 (256)
102 PF08777 RRM_3: RNA binding mo 97.7 0.00015 3.3E-09 52.7 7.2 72 22-99 1-76 (105)
103 KOG0122|consensus 97.7 3.9E-05 8.5E-10 62.7 4.4 38 112-150 231-268 (270)
104 KOG1457|consensus 97.7 3.6E-05 7.8E-10 62.2 3.9 66 20-89 208-274 (284)
105 KOG1995|consensus 97.7 4.9E-05 1.1E-09 65.4 4.6 84 17-102 61-153 (351)
106 KOG0112|consensus 97.7 2.1E-05 4.6E-10 74.6 2.2 131 18-152 368-532 (975)
107 PF11608 Limkain-b1: Limkain b 97.6 0.00042 9E-09 47.6 7.3 67 23-101 3-75 (90)
108 PF00076 RRM_1: RNA recognitio 97.6 4.9E-05 1.1E-09 50.4 2.8 33 111-144 38-70 (70)
109 KOG0130|consensus 97.6 6.9E-05 1.5E-09 55.9 3.6 41 112-153 114-154 (170)
110 KOG4210|consensus 97.6 8.8E-05 1.9E-09 63.6 4.4 83 21-106 183-267 (285)
111 KOG0107|consensus 97.6 7.2E-05 1.6E-09 58.3 3.3 37 112-149 47-83 (195)
112 PLN03213 repressor of silencin 97.5 4.8E-05 1E-09 68.0 2.5 65 173-239 10-87 (759)
113 KOG0125|consensus 97.5 7.5E-05 1.6E-09 63.5 3.4 70 173-243 96-176 (376)
114 COG5175 MOT2 Transcriptional r 97.5 0.00027 5.8E-09 60.4 6.6 79 22-102 114-202 (480)
115 KOG0108|consensus 97.4 9.4E-05 2E-09 66.7 3.1 66 174-239 19-97 (435)
116 KOG2193|consensus 97.4 4.1E-05 8.8E-10 67.1 0.2 117 23-147 2-153 (584)
117 KOG1365|consensus 97.4 0.0027 5.8E-08 55.4 11.1 175 27-238 166-360 (508)
118 KOG0129|consensus 97.4 0.0009 2E-08 60.3 8.4 61 21-82 258-325 (520)
119 KOG2314|consensus 97.4 0.00034 7.3E-09 63.6 5.6 80 21-102 57-143 (698)
120 KOG0128|consensus 97.3 1.8E-05 3.9E-10 74.7 -2.8 125 20-147 665-811 (881)
121 smart00360 RRM RNA recognition 97.3 0.00043 9.2E-09 45.1 4.2 36 110-146 36-71 (71)
122 KOG0121|consensus 97.3 0.0003 6.5E-09 52.1 3.6 36 112-148 78-113 (153)
123 KOG4849|consensus 97.2 0.00033 7.2E-09 60.1 3.3 80 20-101 78-160 (498)
124 KOG1548|consensus 97.1 0.0014 3.1E-08 56.3 6.9 88 9-102 252-351 (382)
125 PF08675 RNA_bind: RNA binding 97.1 0.0041 8.8E-08 42.7 7.3 54 24-85 11-64 (87)
126 smart00362 RRM_2 RNA recogniti 97.1 0.00076 1.7E-08 44.0 3.8 36 110-146 37-72 (72)
127 PF14259 RRM_6: RNA recognitio 97.0 0.00057 1.2E-08 45.4 2.8 34 110-144 37-70 (70)
128 cd00590 RRM RRM (RNA recogniti 97.0 0.0014 3E-08 43.0 4.4 37 110-147 38-74 (74)
129 PLN03120 nucleic acid binding 97.0 0.0016 3.5E-08 54.5 5.6 53 91-151 28-80 (260)
130 KOG0129|consensus 96.9 0.003 6.5E-08 57.0 7.3 67 16-82 364-432 (520)
131 KOG0226|consensus 96.9 0.00075 1.6E-08 55.7 3.1 105 39-147 117-266 (290)
132 PF15023 DUF4523: Protein of u 96.9 0.0082 1.8E-07 45.4 8.1 76 16-101 80-160 (166)
133 KOG4208|consensus 96.9 0.0011 2.4E-08 53.0 3.6 52 92-147 75-126 (214)
134 KOG3152|consensus 96.8 0.0011 2.3E-08 54.9 2.9 70 21-90 73-155 (278)
135 KOG4210|consensus 96.7 0.0015 3.1E-08 56.1 3.7 127 20-150 86-263 (285)
136 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0048 1E-07 38.9 5.0 51 23-80 2-53 (53)
137 KOG4307|consensus 96.6 0.0072 1.6E-07 56.5 7.4 77 21-99 865-943 (944)
138 KOG1855|consensus 96.5 0.0038 8.3E-08 55.2 4.7 70 16-85 225-308 (484)
139 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.011 2.4E-07 42.5 6.1 77 22-101 6-90 (100)
140 PF08952 DUF1866: Domain of un 96.4 0.02 4.3E-07 43.8 7.6 77 16-103 21-107 (146)
141 KOG2416|consensus 96.4 0.0042 9.2E-08 57.0 4.6 68 16-89 438-507 (718)
142 KOG0114|consensus 96.4 0.0062 1.3E-07 43.6 4.2 35 112-147 57-91 (124)
143 KOG0126|consensus 96.3 0.00026 5.5E-09 55.6 -3.1 64 174-237 36-112 (219)
144 KOG0105|consensus 96.3 0.032 6.9E-07 44.2 8.3 69 22-97 115-184 (241)
145 KOG0113|consensus 96.3 0.0038 8.2E-08 52.7 3.3 67 171-237 99-178 (335)
146 KOG0112|consensus 96.2 0.0093 2E-07 57.3 5.9 79 18-102 451-530 (975)
147 COG0724 RNA-binding proteins ( 96.0 0.0085 1.8E-07 49.8 4.2 37 112-149 157-193 (306)
148 KOG1996|consensus 96.0 0.021 4.6E-07 48.3 6.1 71 35-107 300-371 (378)
149 KOG0128|consensus 95.9 0.0037 8.1E-08 59.6 1.5 78 22-102 736-814 (881)
150 PF11608 Limkain-b1: Limkain b 95.9 0.017 3.6E-07 39.8 4.2 37 111-148 38-74 (90)
151 KOG4307|consensus 95.7 0.012 2.6E-07 55.2 4.0 83 17-102 429-513 (944)
152 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.038 8.3E-07 44.0 6.1 82 21-102 6-97 (176)
153 KOG0149|consensus 95.5 0.0045 9.7E-08 50.6 0.6 65 174-238 13-89 (247)
154 KOG2202|consensus 95.5 0.0084 1.8E-07 49.7 1.9 68 37-107 84-152 (260)
155 PF07576 BRAP2: BRCA1-associat 95.2 0.32 6.9E-06 35.6 9.4 67 21-89 11-80 (110)
156 KOG1365|consensus 95.2 0.12 2.6E-06 45.4 8.1 78 27-107 65-143 (508)
157 KOG0804|consensus 94.8 0.12 2.6E-06 46.4 7.3 66 22-89 74-141 (493)
158 PLN03121 nucleic acid binding 94.7 0.066 1.4E-06 44.4 5.2 52 91-150 29-80 (243)
159 KOG0415|consensus 94.5 0.027 5.8E-07 48.8 2.6 37 112-149 281-317 (479)
160 KOG0151|consensus 94.3 0.05 1.1E-06 51.2 3.9 37 112-149 219-255 (877)
161 PF10309 DUF2414: Protein of u 93.8 0.35 7.5E-06 31.5 6.1 52 23-83 6-62 (62)
162 KOG4676|consensus 93.6 0.094 2E-06 46.2 4.0 110 24-143 9-122 (479)
163 KOG0153|consensus 93.5 0.076 1.6E-06 46.0 3.3 39 112-150 264-302 (377)
164 KOG0115|consensus 93.1 0.16 3.4E-06 42.4 4.4 78 22-100 31-111 (275)
165 KOG0132|consensus 92.7 0.16 3.4E-06 48.6 4.3 38 112-150 457-494 (894)
166 PF04847 Calcipressin: Calcipr 92.2 0.3 6.5E-06 39.2 4.9 61 34-102 8-70 (184)
167 KOG2068|consensus 91.8 0.09 2E-06 45.4 1.6 79 22-102 77-162 (327)
168 KOG4574|consensus 90.5 0.21 4.6E-06 48.1 2.8 75 25-105 301-376 (1007)
169 KOG4209|consensus 89.9 0.4 8.6E-06 40.0 3.7 35 111-147 142-176 (231)
170 KOG2135|consensus 89.5 0.19 4.1E-06 45.3 1.6 79 17-104 367-447 (526)
171 PF03880 DbpA: DbpA RNA bindin 89.3 2 4.4E-05 28.8 6.3 66 24-100 2-74 (74)
172 PF04059 RRM_2: RNA recognitio 88.7 0.97 2.1E-05 32.2 4.5 39 111-149 44-85 (97)
173 KOG4661|consensus 88.5 0.48 1E-05 43.9 3.4 38 112-150 447-484 (940)
174 KOG1996|consensus 88.4 0.45 9.7E-06 40.5 3.0 32 115-147 332-363 (378)
175 COG5175 MOT2 Transcriptional r 88.4 2 4.4E-05 37.4 6.9 96 44-149 102-201 (480)
176 KOG4660|consensus 88.0 0.82 1.8E-05 42.1 4.6 79 23-101 389-471 (549)
177 KOG2202|consensus 86.4 0.57 1.2E-05 39.1 2.5 37 112-149 110-146 (260)
178 KOG2591|consensus 85.6 2.3 4.9E-05 39.5 6.0 70 21-99 174-248 (684)
179 KOG2253|consensus 85.5 0.8 1.7E-05 43.1 3.2 72 15-97 33-105 (668)
180 KOG2314|consensus 84.6 1.2 2.7E-05 41.2 3.9 53 91-147 88-140 (698)
181 KOG4285|consensus 84.3 2.2 4.9E-05 36.5 5.1 59 36-102 211-269 (350)
182 KOG2193|consensus 78.6 1.4 3.1E-05 39.4 2.1 103 109-237 34-154 (584)
183 KOG0533|consensus 77.6 3.3 7.1E-05 34.7 3.8 37 112-149 124-160 (243)
184 KOG4454|consensus 76.7 1.5 3.3E-05 35.8 1.6 51 91-147 33-83 (267)
185 PF11767 SET_assoc: Histone ly 74.6 17 0.00036 23.9 5.8 50 31-89 10-59 (66)
186 PF08952 DUF1866: Domain of un 69.4 5.4 0.00012 30.6 3.0 43 92-147 61-103 (146)
187 PF03880 DbpA: DbpA RNA bindin 64.1 5.3 0.00011 26.7 1.8 25 213-237 50-74 (74)
188 KOG1995|consensus 63.8 2.9 6.4E-05 36.6 0.7 68 172-239 65-153 (351)
189 PF11767 SET_assoc: Histone ly 60.3 10 0.00022 25.0 2.6 32 112-144 33-64 (66)
190 KOG4410|consensus 58.2 38 0.00082 29.0 6.2 50 19-74 327-378 (396)
191 KOG4676|consensus 56.2 2.1 4.7E-05 37.9 -1.5 61 23-88 152-213 (479)
192 KOG0116|consensus 54.1 11 0.00023 34.4 2.5 36 112-149 330-365 (419)
193 PF15023 DUF4523: Protein of u 49.9 32 0.0007 26.4 4.1 35 112-148 125-159 (166)
194 PF05172 Nup35_RRM: Nup53/35/4 47.2 31 0.00067 24.7 3.5 37 109-147 51-88 (100)
195 PF08777 RRM_3: RNA binding mo 43.4 22 0.00048 25.6 2.4 24 112-135 37-60 (105)
196 smart00596 PRE_C2HC PRE_C2HC d 41.9 34 0.00074 22.7 2.8 61 36-101 2-63 (69)
197 PF07530 PRE_C2HC: Associated 40.9 42 0.0009 22.1 3.2 61 36-101 2-63 (68)
198 PF04847 Calcipressin: Calcipr 39.6 25 0.00055 28.2 2.4 34 115-149 34-69 (184)
199 KOG2416|consensus 38.9 44 0.00096 31.6 4.0 36 112-147 481-518 (718)
200 PRK14548 50S ribosomal protein 38.5 1.3E+02 0.0029 20.7 5.5 55 25-82 23-80 (84)
201 KOG4483|consensus 34.1 1.1E+02 0.0025 27.6 5.6 54 22-82 391-446 (528)
202 KOG1295|consensus 33.3 55 0.0012 29.2 3.6 69 21-89 6-78 (376)
203 PF03439 Spt5-NGN: Early trans 31.4 81 0.0018 21.5 3.6 26 62-87 43-68 (84)
204 KOG4019|consensus 30.1 42 0.00091 26.8 2.1 71 24-102 12-89 (193)
205 KOG0115|consensus 29.9 1.7E+02 0.0036 24.9 5.7 92 122-238 4-112 (275)
206 KOG2068|consensus 29.7 17 0.00037 31.7 -0.1 58 92-150 105-162 (327)
207 PF07576 BRAP2: BRCA1-associat 29.3 88 0.0019 22.8 3.6 24 114-137 56-79 (110)
208 TIGR03636 L23_arch archaeal ri 28.7 1.9E+02 0.0041 19.6 5.5 55 25-82 16-73 (77)
209 PF13689 DUF4154: Domain of un 27.9 67 0.0015 24.3 3.0 43 196-240 20-63 (145)
210 KOG2591|consensus 27.5 80 0.0017 29.8 3.7 43 92-145 202-246 (684)
211 PF15513 DUF4651: Domain of un 24.6 1.7E+02 0.0038 18.9 3.9 18 36-53 9-26 (62)
212 PF11411 DNA_ligase_IV: DNA li 22.6 56 0.0012 18.7 1.2 17 31-47 19-35 (36)
213 KOG2295|consensus 22.4 13 0.00028 34.7 -2.2 69 20-88 229-298 (648)
214 PF02714 DUF221: Domain of unk 22.2 1.2E+02 0.0026 26.2 3.8 33 66-102 1-33 (325)
215 PRK11901 hypothetical protein; 21.5 1.9E+02 0.0041 25.4 4.7 62 25-87 245-308 (327)
216 PF11823 DUF3343: Protein of u 20.9 1.2E+02 0.0026 19.9 2.8 25 113-137 2-26 (73)
217 PF10567 Nab6_mRNP_bdg: RNA-re 20.7 1.9E+02 0.0041 25.1 4.4 60 17-76 10-77 (309)
218 PRK01178 rps24e 30S ribosomal 20.6 2.2E+02 0.0049 20.3 4.2 47 32-79 30-81 (99)
No 1
>KOG0145|consensus
Probab=100.00 E-value=2.9e-35 Score=237.37 Aligned_cols=214 Identities=20% Similarity=0.202 Sum_probs=176.2
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.+.|.|. ||..+|+++|+.+|+..|+|.+|++++|+.+|++.||+||.|..++||++|+..|||..+ ..+.|+|.|+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVSyA 118 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVSYA 118 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEEEec
Confidence 4678899 999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cccc--cCc--Cccc-----------------------------------CcEEEEEcCCHHHHHHHHHhhCCCcCCCC-
Q psy882 101 AKLE--FKE--GYRG-----------------------------------GQKISVQYTSPQSAAYARDKFHGFAYPPG- 140 (253)
Q Consensus 101 ~~~~--~~~--~~v~-----------------------------------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g- 140 (253)
.|.. .+. .||+ ||.|||.|..+.+|+.|+..|||... .|
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~g~ 197 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-SGC 197 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC-CCC
Confidence 9821 221 3332 99999999999999999999999876 55
Q ss_pred -CcEEEEecCCCCCCCC------------C--------------------------CCCC---------CCCcccccccc
Q psy882 141 -IPMVVVPDFSYGLPRN------------G--------------------------ASAL---------GGNAALSVVDS 172 (253)
Q Consensus 141 -~~l~v~~~~~~~~~~~------------~--------------------------~~~~---------~~~~~~~~~~~ 172 (253)
.+|.|+|+.+++.... . +..+ .+...+.-+..
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 6999999655411000 0 0000 11111223445
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh--HHH-HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY--YIL-VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~--~~~-~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
+||+||+||. ++++..||| |++|++ |..+.+.+|||||.. +.. ..||.+|||+.+++|.|+|+|..
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 6999999999 999999999 999955 666667779998866 444 99999999999999999999976
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.6e-34 Score=252.87 Aligned_cols=219 Identities=18% Similarity=0.177 Sum_probs=172.1
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||..+++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 46889999 999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred cccccc-------------------------Cc-Ccc-------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC
Q psy882 100 AAKLEF-------------------------KE-GYR-------------GGQKISVQYTSPQSAAYARDKFHGFAYPPG 140 (253)
Q Consensus 100 a~~~~~-------------------------~~-~~v-------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g 140 (253)
+.+..- .. |.+ .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 80 a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~-~g 158 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP-SG 158 (352)
T ss_pred ecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc-CC
Confidence 876211 10 111 278999999999999999999999888 66
Q ss_pred --CcEEEEecCCCCCCC---------------CCCCC-------------------------------------------
Q psy882 141 --IPMVVVPDFSYGLPR---------------NGASA------------------------------------------- 160 (253)
Q Consensus 141 --~~l~v~~~~~~~~~~---------------~~~~~------------------------------------------- 160 (253)
.+|.|.|+..+.... ..+..
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 678888854332000 00000
Q ss_pred -------C-----------CCCcccccccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh
Q psy882 161 -------L-----------GGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY 212 (253)
Q Consensus 161 -------~-----------~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~ 212 (253)
+ .+.........+.+++|.||+ +++++.|+. |..|+. |..++..+|||||.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0 000000001222469999999 788888888 888844 666778889999888
Q ss_pred -HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 213 -YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 213 -~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
... .+||.+|||..|+||+|+|+|+. +|+.
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~-~~~~ 351 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNRVLQVSFKT-NKAY 351 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEcc-CCCC
Confidence 433 99999999999999999999998 6654
No 3
>KOG0117|consensus
Probab=100.00 E-value=5.8e-34 Score=244.68 Aligned_cols=216 Identities=25% Similarity=0.297 Sum_probs=175.4
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.+.+|.|||+ ||.++.|++|.-+|++.|+|.++++|+|+.+|.+||||||.|.+.++|+.||+.||+..|. .|+.|.|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGV 158 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEE
Confidence 3668999999 9999999999999999999999999999999999999999999999999999999999998 6999999
Q ss_pred EEcccc-------------------ccCc---Ccc-------------cCcEEEEEcCCHHHHHHHHHhhC-C-CcCCCC
Q psy882 98 LIAAKL-------------------EFKE---GYR-------------GGQKISVQYTSPQSAAYARDKFH-G-FAYPPG 140 (253)
Q Consensus 98 ~~a~~~-------------------~~~~---~~v-------------~~g~~fv~f~~~~~A~~A~~~l~-g-~~~~~g 140 (253)
+.+... ++++ |.+ +||||||+|.++..|.+|.++|- | ..+ +|
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl-wg 237 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL-WG 237 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee-cC
Confidence 887761 1111 222 29999999999999999999885 4 556 99
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCCCCChhhhccccchhhhhH---HH
Q psy882 141 IPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLSTDSRFISRLRLDDFIYY---IL 215 (253)
Q Consensus 141 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~~---~~ 215 (253)
+.+.|.|+++...+... +++.+ ..++|.||+ +++++.|-. |..+..-..+.....||||+|. +.
T Consensus 238 n~~tVdWAep~~e~ded--------~ms~V---KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~da 306 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDED--------TMSKV---KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDA 306 (506)
T ss_pred CcceeeccCcccCCChh--------hhhhe---eeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHH
Confidence 99999998764333221 11111 358999999 666666555 8888665555566789988882 23
Q ss_pred HHHHHHhcCceecCeEEEEEecCCCCCcccccc
Q psy882 216 VEFSQTLHGAEMYGSRLKVMEADPPKGDRNRKR 248 (253)
Q Consensus 216 ~~Ai~~lnG~~i~G~~l~v~~a~~p~~~~~~k~ 248 (253)
.+|++.|||++|.|..|.|++|||+.++ ++.|
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k~-k~~r 338 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDKK-KKER 338 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhhh-ccch
Confidence 9999999999999999999999966555 4443
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=7.2e-30 Score=233.99 Aligned_cols=207 Identities=23% Similarity=0.236 Sum_probs=164.6
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
...++|||+ ||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|+.||+.|++..+. .++.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccccc
Confidence 346999999 9999999999999999999999999999 69999999999999999999999999998885 47777777
Q ss_pred Eccc-------------------cccCc---Cc-------------ccCcEEEEEcCCHHHHHHHHHhhCC--CcCCCCC
Q psy882 99 IAAK-------------------LEFKE---GY-------------RGGQKISVQYTSPQSAAYARDKFHG--FAYPPGI 141 (253)
Q Consensus 99 ~a~~-------------------~~~~~---~~-------------v~~g~~fv~f~~~~~A~~A~~~l~g--~~~~~g~ 141 (253)
++.. +.|.. +. .++|||||+|.++++|.+|+..|+. ..+ .|+
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l-~Gr 212 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGH 212 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe-cCc
Confidence 6643 12222 11 1289999999999999999998864 346 899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCC--CCChhhhccccchhhhh-HHH-
Q psy882 142 PMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGL--STDSRFISRLRLDDFIY-YIL- 215 (253)
Q Consensus 142 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~--~~~~~~~~~~~fg~v~~-~~~- 215 (253)
.|.|.|+........ ........|+|.||+ .++++.|.+ |..+ ..-..+...++||||.| ...
T Consensus 213 ~I~VdwA~p~~~~d~-----------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~ 281 (578)
T TIGR01648 213 VIAVDWAEPEEEVDE-----------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDRED 281 (578)
T ss_pred eEEEEeecccccccc-----------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHH
Confidence 999999654311110 001122569999999 777777777 8888 44334445668998888 333
Q ss_pred -HHHHHHhcCceecCeEEEEEecCCC
Q psy882 216 -VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 216 -~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
++|++.|||.+|+|++|+|+||+|+
T Consensus 282 A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 282 AVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCC
Confidence 9999999999999999999999943
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.2e-27 Score=223.58 Aligned_cols=232 Identities=20% Similarity=0.191 Sum_probs=178.1
Q ss_pred CCCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 1 MDRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
.++++++.|....... ......+|||+ ||.++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|+.|
T Consensus 68 ~gk~i~i~~s~~~~~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 68 GGKPIRIMWSQRDPSL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred CCeeEEeecccccccc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH
Confidence 3678899987653322 22235679999 99999999999999999999999999985 888999999999999999999
Q ss_pred HHHhCCcccCCCCCcEEEEEcccc---------ccCcCccc----------------------------------CcEEE
Q psy882 80 VEEMNGEFLPNHSKPIKVLIAAKL---------EFKEGYRG----------------------------------GQKIS 116 (253)
Q Consensus 80 i~~l~~~~~~~~g~~i~v~~a~~~---------~~~~~~v~----------------------------------~g~~f 116 (253)
++.++|..+ .++.|.|...... .+...||. +||||
T Consensus 146 i~~lng~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~af 223 (562)
T TIGR01628 146 IQKVNGMLL--NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAF 223 (562)
T ss_pred HHHhcccEe--cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEE
Confidence 999999998 6999998765431 11112221 78999
Q ss_pred EEcCCHHHHHHHHHhhCCCcCCC----CCcEEEEecCCCCCCCCCCCCCCCCc------ccccccccccccccchh-hHH
Q psy882 117 VQYTSPQSAAYARDKFHGFAYPP----GIPMVVVPDFSYGLPRNGASALGGNA------ALSVVDSKGALQSLTKA-LAQ 185 (253)
Q Consensus 117 v~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~n~~-~~~ 185 (253)
|+|.+.++|.+|+..|+|..+ . |+.|.|.++.... .+....... ..........++|.|++ +.+
T Consensus 224 V~F~~~e~A~~Av~~l~g~~i-~~~~~g~~l~v~~a~~k~----er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~ 298 (562)
T TIGR01628 224 VNFEKHEDAAKAVEEMNGKKI-GLAKEGKKLYVGRAQKRA----EREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVT 298 (562)
T ss_pred EEECCHHHHHHHHHHhCCcEe-cccccceeeEeecccChh----hhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccC
Confidence 999999999999999999999 8 9999999854321 110000000 00112334679999999 667
Q ss_pred HHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 186 ATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 186 ~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
+..|.. |..|+. | ..+...|||||.| ... .+|+..|||..|+|++|.|.+|. ++++
T Consensus 299 ~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~-~k~~ 366 (562)
T TIGR01628 299 DEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ-RKEQ 366 (562)
T ss_pred HHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc-CcHH
Confidence 777777 777743 3 3456779999888 333 99999999999999999999999 6665
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4.3e-27 Score=219.74 Aligned_cols=205 Identities=20% Similarity=0.221 Sum_probs=164.0
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccc
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
+|||+ ||.++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.+++..+ .|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 69999 999999999999999999999999999999999999999999999999999999999988 699999999864
Q ss_pred cccC------cCcc----------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCc
Q psy882 103 LEFK------EGYR----------------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIP 142 (253)
Q Consensus 103 ~~~~------~~~v----------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~ 142 (253)
+... .+|| ++|||||+|.+.++|.+|+..|||..+ .|+.
T Consensus 80 ~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~-~~~~ 158 (562)
T TIGR01628 80 DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL-NDKE 158 (562)
T ss_pred cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe-cCce
Confidence 2110 0111 278999999999999999999999999 9999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCCCC-------Chhhhccccchhhhh-
Q psy882 143 MVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLST-------DSRFISRLRLDDFIY- 212 (253)
Q Consensus 143 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~-------~~~~~~~~~fg~v~~- 212 (253)
|.|.+.... ..+. .........++|.|++ +.+++.|.. |..|+. ....+...|||||.+
T Consensus 159 i~v~~~~~~----~~~~-------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 159 VYVGRFIKK----HERE-------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred EEEeccccc----cccc-------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 999873321 1110 0111223468999999 666666666 776632 112355678998888
Q ss_pred HHH--HHHHHHhcCceec----CeEEEEEecCCCCCc
Q psy882 213 YIL--VEFSQTLHGAEMY----GSRLKVMEADPPKGD 243 (253)
Q Consensus 213 ~~~--~~Ai~~lnG~~i~----G~~l~v~~a~~p~~~ 243 (253)
... .+|++.|||..|. |+.|.|.++. ++.+
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~-~k~e 263 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ-KRAE 263 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeeccc-Chhh
Confidence 333 9999999999999 9999999998 5544
No 7
>KOG0144|consensus
Probab=99.94 E-value=2.1e-26 Score=197.50 Aligned_cols=135 Identities=27% Similarity=0.433 Sum_probs=117.8
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc-cCCCCC
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF-LPNHSK 93 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~-~~~~g~ 93 (253)
++++...-+|||+ +|+.|+|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++.. +++..+
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 4445678899999 99999999999999999999999999999999999999999999999999999998764 666789
Q ss_pred cEEEEEccccccC-----cCccc----------------------------------CcEEEEEcCCHHHHHHHHHhhCC
Q psy882 94 PIKVLIAAKLEFK-----EGYRG----------------------------------GQKISVQYTSPQSAAYARDKFHG 134 (253)
Q Consensus 94 ~i~v~~a~~~~~~-----~~~v~----------------------------------~g~~fv~f~~~~~A~~A~~~l~g 134 (253)
+|.|.+++.+..+ ++||+ ||||||.|.+++.|..|++.|||
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 9999999985443 12332 99999999999999999999999
Q ss_pred CcCCCC--CcEEEEecCC
Q psy882 135 FAYPPG--IPMVVVPDFS 150 (253)
Q Consensus 135 ~~~~~g--~~l~v~~~~~ 150 (253)
...-.| .+|.|.|++.
T Consensus 188 ~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADT 205 (510)
T ss_pred ceeeccCCCceEEEeccc
Confidence 664377 5999999654
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=7.6e-25 Score=199.88 Aligned_cols=128 Identities=30% Similarity=0.466 Sum_probs=111.7
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
.+.+.++|||+ ||..+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|.+|+. |+|..+ .|++|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~--~g~~i~ 161 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML--LGRPII 161 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE--CCeeeE
Confidence 34567899999 99999999999999999999999999999999999999999999999999996 899998 699999
Q ss_pred EEEcccccc----------------CcCccc-----------------------------------CcEEEEEcCCHHHH
Q psy882 97 VLIAAKLEF----------------KEGYRG-----------------------------------GQKISVQYTSPQSA 125 (253)
Q Consensus 97 v~~a~~~~~----------------~~~~v~-----------------------------------~g~~fv~f~~~~~A 125 (253)
|.++..+.. ..+||. +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 987643100 111221 68999999999999
Q ss_pred HHHHHhhCCCcCCCCCcEEEEecC
Q psy882 126 AYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 126 ~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.+|+..|||..+ .|++|+|.|+.
T Consensus 242 ~~A~~~l~g~~i-~g~~i~v~~a~ 264 (457)
T TIGR01622 242 KEALEVMNGFEL-AGRPIKVGYAQ 264 (457)
T ss_pred HHHHHhcCCcEE-CCEEEEEEEcc
Confidence 999999999999 99999999943
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=7e-25 Score=200.91 Aligned_cols=211 Identities=17% Similarity=0.167 Sum_probs=156.6
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCcccCCCCCcEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM--NGEFLPNHSKPIKV 97 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l--~~~~~~~~g~~i~v 97 (253)
|+++|||+ ||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|+.|++.+ ++..+ .|+.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 57899999 9999999999999999999999999865 689999999999999999875 56677 7999999
Q ss_pred EEccccccC----------------cCccc-------------------------------CcEEEEEcCCHHHHHHHHH
Q psy882 98 LIAAKLEFK----------------EGYRG-------------------------------GQKISVQYTSPQSAAYARD 130 (253)
Q Consensus 98 ~~a~~~~~~----------------~~~v~-------------------------------~g~~fv~f~~~~~A~~A~~ 130 (253)
.|+..+... ..+|. .++|||+|.+.++|.+|+.
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKA 152 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHH
Confidence 998642200 01211 3589999999999999999
Q ss_pred hhCCCcCCCC-CcEEEEecCCCC-----------------CCCC----------CCCCC----------------C----
Q psy882 131 KFHGFAYPPG-IPMVVVPDFSYG-----------------LPRN----------GASAL----------------G---- 162 (253)
Q Consensus 131 ~l~g~~~~~g-~~l~v~~~~~~~-----------------~~~~----------~~~~~----------------~---- 162 (253)
.|||..+.+| ++|+|.|+.... .++. .+... .
T Consensus 153 ~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (481)
T TIGR01649 153 ALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPL 232 (481)
T ss_pred HhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCC
Confidence 9999999544 689998855321 0000 00000 0
Q ss_pred ---------C---------------Cc---c-----cccccccccccccchh-h-HHHHHhhh-hcCCCCChhh---hcc
Q psy882 163 ---------G---------------NA---A-----LSVVDSKGALQSLTKA-L-AQATSLLR-SAGLSTDSRF---ISR 204 (253)
Q Consensus 163 ---------~---------------~~---~-----~~~~~~~~~~~v~n~~-~-~~~~~l~~-~~~~~~~~~~---~~~ 204 (253)
+ .. . .........++|.||+ . .++..|+. |..|+.-..+ ..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~ 312 (481)
T TIGR01649 233 APLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK 312 (481)
T ss_pred CcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 0 00 0 0001234689999998 3 67777888 8888652211 123
Q ss_pred ccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 205 LRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 205 ~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
.|||+|.+ ... ..|++.|||..|.|++|+|++++.
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 58998888 443 999999999999999999999975
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=6e-24 Score=194.76 Aligned_cols=232 Identities=18% Similarity=0.160 Sum_probs=163.7
Q ss_pred CCcccccCCCCCCCCC-------CCC--CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEec
Q psy882 2 DRNYRINTHDRSREYN-------DEP--PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~-------~~~--~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~ 71 (253)
+|+++++++....... ... .-.+|||+ |++.+++++|+++|+.||.|.+|.+++++. +|+|||+|.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~ 142 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFE 142 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEEC
Confidence 5677787764322111 111 22478999 999999999999999999999999988742 479999999
Q ss_pred CHHHHHHHHHHhCCcccCCCCCcEEEEEcccccc---------------------------------C------------
Q psy882 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEF---------------------------------K------------ 106 (253)
Q Consensus 72 ~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~---------------------------------~------------ 106 (253)
+.++|.+|++.|||..+.+.+..|+|.|+.+... .
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGH 222 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCC
Confidence 9999999999999999964346788888764100 0
Q ss_pred ---------------------------------------------------c---Cccc---------------------
Q psy882 107 ---------------------------------------------------E---GYRG--------------------- 111 (253)
Q Consensus 107 ---------------------------------------------------~---~~v~--------------------- 111 (253)
. +||+
T Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~ 302 (481)
T TIGR01649 223 DGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN 302 (481)
T ss_pred cccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC
Confidence 0 1111
Q ss_pred ----------CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCC--CCC-----CCC-------CCCCCcc-
Q psy882 112 ----------GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGL--PRN-----GAS-------ALGGNAA- 166 (253)
Q Consensus 112 ----------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~--~~~-----~~~-------~~~~~~~- 166 (253)
+|||||+|.+.++|..|+..|||..+ .|++|+|.++..... +.. ... ....+..
T Consensus 303 V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l-~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ 381 (481)
T TIGR01649 303 VERVKFMKNKKETALIEMADPYQAQLALTHLNGVKL-FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKK 381 (481)
T ss_pred eEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE-CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCC
Confidence 78999999999999999999999999 999999999643211 000 000 0000000
Q ss_pred ------cccccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCcee
Q psy882 167 ------LSVVDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEM 227 (253)
Q Consensus 167 ------~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i 227 (253)
.........++|.||+ ..+++.|.. |..++. .....++.+||+|.+ ... .+|+..|||.+|
T Consensus 382 ~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 382 PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 0011234678999999 666666766 666543 011123468998887 333 999999999999
Q ss_pred cCeE------EEEEecC
Q psy882 228 YGSR------LKVMEAD 238 (253)
Q Consensus 228 ~G~~------l~v~~a~ 238 (253)
.|+. |+|+||+
T Consensus 462 ~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 462 NEPNGSAPYHLKVSFST 478 (481)
T ss_pred CCCCCCccceEEEEecc
Confidence 9995 9999999
No 11
>KOG0148|consensus
Probab=99.91 E-value=4.5e-24 Score=173.53 Aligned_cols=143 Identities=23% Similarity=0.427 Sum_probs=123.8
Q ss_pred cccccCCCCCCCCCCCCC---CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 4 NYRINTHDRSREYNDEPP---HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~---~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
|++++|+... ..+..+. +--+||+ |...++.+.|++.|.+||+|.+++|++|..|++++||+||.|.+.++|+.|
T Consensus 42 e~~v~wa~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 42 ELKVNWATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred hhccccccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 6788888765 2333332 4568999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccCCCCCcEEEEEccccccCc--------------------Cccc----------------------------
Q psy882 80 VEEMNGEFLPNHSKPIKVLIAAKLEFKE--------------------GYRG---------------------------- 111 (253)
Q Consensus 80 i~~l~~~~~~~~g~~i~v~~a~~~~~~~--------------------~~v~---------------------------- 111 (253)
|+.|||..+ .+|.|+-.||..+.... .|++
T Consensus 121 I~~MnGqWl--G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 121 IQQMNGQWL--GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred HHHhCCeee--ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 999999999 58999999998733111 1211
Q ss_pred -CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 -GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 -~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+||+||.|.++++|.+||-.||+.++ .|+.+++.|.+.
T Consensus 199 ~qGYaFVrF~tkEaAahAIv~mNntei-~G~~VkCsWGKe 237 (321)
T KOG0148|consen 199 DQGYAFVRFETKEAAAHAIVQMNNTEI-GGQLVRCSWGKE 237 (321)
T ss_pred ccceEEEEecchhhHHHHHHHhcCcee-CceEEEEecccc
Confidence 99999999999999999999999999 999999999554
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=1.9e-23 Score=182.74 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=115.9
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
..+....++|||+ ||+++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|+.|++.|++..+ .++.
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~ 178 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKR 178 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCce
Confidence 3455678999999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEcccccc--C--cCccc-----------------------------------CcEEEEEcCCHHHHHHHHHhhCCC
Q psy882 95 IKVLIAAKLEF--K--EGYRG-----------------------------------GQKISVQYTSPQSAAYARDKFHGF 135 (253)
Q Consensus 95 i~v~~a~~~~~--~--~~~v~-----------------------------------~g~~fv~f~~~~~A~~A~~~l~g~ 135 (253)
|+|.++.+..- . .+||. ++||||+|.+.++|++|++.||+.
T Consensus 179 i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 179 LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred eeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 99999876211 0 12221 589999999999999999999999
Q ss_pred cCCCC--CcEEEEecCCC
Q psy882 136 AYPPG--IPMVVVPDFSY 151 (253)
Q Consensus 136 ~~~~g--~~l~v~~~~~~ 151 (253)
.+ .+ ++|+|.|++..
T Consensus 259 ~~-~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 259 IP-EGGSQPLTVRLAEEH 275 (346)
T ss_pred cc-CCCceeEEEEECCcc
Confidence 88 54 79999996643
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=2.6e-23 Score=192.20 Aligned_cols=213 Identities=11% Similarity=0.064 Sum_probs=145.5
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCC------------CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPF------------GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~------------G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~ 82 (253)
+......++|||+ ||+.+|+++|+++|..+ +.|..+.+. ..+|||||+|.+.++|..|+ .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-c
Confidence 3445678999999 99999999999999864 345555443 34899999999999999999 4
Q ss_pred hCCcccCCCCCcEEEEEcccc--------------------cc-------------CcCccc------------------
Q psy882 83 MNGEFLPNHSKPIKVLIAAKL--------------------EF-------------KEGYRG------------------ 111 (253)
Q Consensus 83 l~~~~~~~~g~~i~v~~a~~~--------------------~~-------------~~~~v~------------------ 111 (253)
|+|..+ .|+.|+|.....- .+ ..+||+
T Consensus 242 l~g~~~--~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 242 LDSIIY--SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCCeEe--eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 999988 6899998643210 00 012221
Q ss_pred -----------------CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCC-C---CCCCcccc--
Q psy882 112 -----------------GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGAS-A---LGGNAALS-- 168 (253)
Q Consensus 112 -----------------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~-~---~~~~~~~~-- 168 (253)
+|||||+|.+.++|..|+..|||..+ .|+.|.|.++.....+..... . +.......
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~-~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT-GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALS 398 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEECccCCCCCCccccccccccccccccch
Confidence 79999999999999999999999999 999999999643211110000 0 00000000
Q ss_pred ------cccccccccccchhhHHH-----------HHhhh-hcCCCC-----------Chhhhccccchhhhh-HHH--H
Q psy882 169 ------VVDSKGALQSLTKALAQA-----------TSLLR-SAGLST-----------DSRFISRLRLDDFIY-YIL--V 216 (253)
Q Consensus 169 ------~~~~~~~~~v~n~~~~~~-----------~~l~~-~~~~~~-----------~~~~~~~~~fg~v~~-~~~--~ 216 (253)
......++++.|+....+ +.|.+ |..|+. +...+..+||+||.| ... .
T Consensus 399 ~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 399 QSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred hhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 011235567777752211 12333 554422 222234468888888 333 9
Q ss_pred HHHHHhcCceecCeEEEEEecC
Q psy882 217 EFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 217 ~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
+|+.+|||.+|+|++|.|+|..
T Consensus 479 ~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 479 KAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHcCCCEECCeEEEEEEeC
Confidence 9999999999999999999976
No 14
>KOG0127|consensus
Probab=99.89 E-value=7.1e-23 Score=180.37 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=167.1
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
.+|||+ ||++++.++|.++|+..|+|..|.++.++.++.++||+||+|...++++.|+..+.+..+ .|+.|.|..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceeccccccc
Confidence 899999 999999999999999999999999999999999999999999999999999999999999 69999999987
Q ss_pred ccccCc----------------------------------------------------Cccc------------CcEEEE
Q psy882 102 KLEFKE----------------------------------------------------GYRG------------GQKISV 117 (253)
Q Consensus 102 ~~~~~~----------------------------------------------------~~v~------------~g~~fv 117 (253)
...-.+ |.|- .|||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEE
Confidence 711100 1110 799999
Q ss_pred EcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCC------------------------CCC--------------
Q psy882 118 QYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRN------------------------GAS-------------- 159 (253)
Q Consensus 118 ~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~------------------------~~~-------------- 159 (253)
+|.+..+|..|+..|||..| .|++|-|.|+-++..... ...
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i-~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede 242 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKI-DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE 242 (678)
T ss_pred EEeeHHHHHHHHHhccCcee-cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc
Confidence 99999999999999999999 999999999221100000 000
Q ss_pred ---C-----------------CCCCcc----------cc------cccccccccccchh-hHHHHHhhh-hcCCC-----
Q psy882 160 ---A-----------------LGGNAA----------LS------VVDSKGALQSLTKA-LAQATSLLR-SAGLS----- 196 (253)
Q Consensus 160 ---~-----------------~~~~~~----------~~------~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~----- 196 (253)
+ .+.... .+ ..+.+.++||.||+ +++++.|.+ |.-|+
T Consensus 243 Ee~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 243 EETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYA 322 (678)
T ss_pred ccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeE
Confidence 0 000000 00 01123789999999 888887766 55552
Q ss_pred ---CChhhhccccchhhhh-HHH--HHHHHHh-----cC-ceecCeEEEEEecCCCCCc
Q psy882 197 ---TDSRFISRLRLDDFIY-YIL--VEFSQTL-----HG-AEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 197 ---~~~~~~~~~~fg~v~~-~~~--~~Ai~~l-----nG-~~i~G~~l~v~~a~~p~~~ 243 (253)
-|..++..+|-|||.| ... .+||.+. .| ..+.||.|+|..|. +|.+
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av-~Rke 380 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAV-TRKE 380 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeecc-chHH
Confidence 2778888888888888 433 7777776 34 78999999999999 5544
No 15
>KOG0146|consensus
Probab=99.89 E-value=2.5e-23 Score=168.94 Aligned_cols=236 Identities=23% Similarity=0.234 Sum_probs=166.6
Q ss_pred CCCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 1 MDRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
|+|+|.+.++.. .+...+.++|||+ |.+.-.|+|++.+|..||.|.+|.+++.+ .|.++|++||.|.+..+|..|
T Consensus 1 mnrpiqvkpads---esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaA 76 (371)
T KOG0146|consen 1 MNRPIQVKPADS---ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAA 76 (371)
T ss_pred CCCCcccccccc---ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHH
Confidence 899999988832 2223367999999 99999999999999999999999999997 799999999999999999999
Q ss_pred HHHhCCcc-cCCCCCcEEEEEccccccCc-----------Cccc------------------------------------
Q psy882 80 VEEMNGEF-LPNHSKPIKVLIAAKLEFKE-----------GYRG------------------------------------ 111 (253)
Q Consensus 80 i~~l~~~~-~~~~g~~i~v~~a~~~~~~~-----------~~v~------------------------------------ 111 (253)
|..|+|.. +.+....|.|.+++.++.+. |..+
T Consensus 77 I~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~ 156 (371)
T KOG0146|consen 77 INALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMA 156 (371)
T ss_pred HHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhh
Confidence 99999964 66677899999999854433 1000
Q ss_pred -------------------------------------------------CcE-EEEEcCCHHHHHHHHHhhCCCcCCCCC
Q psy882 112 -------------------------------------------------GQK-ISVQYTSPQSAAYARDKFHGFAYPPGI 141 (253)
Q Consensus 112 -------------------------------------------------~g~-~fv~f~~~~~A~~A~~~l~g~~~~~g~ 141 (253)
+|| +...+..-+.|..++- -||...+.-.
T Consensus 157 ~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy-~ng~~pypaQ 235 (371)
T KOG0146|consen 157 AFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVY-ANGLHPYPAQ 235 (371)
T ss_pred hhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHh-hcCCccCCCC
Confidence 445 5556666666666552 3333221111
Q ss_pred -cEEEEe-----cCCC---CCCCCCCCCCCC----Ccc------cccccccccccccchh-hHHHHHhhh-hcCCCC---
Q psy882 142 -PMVVVP-----DFSY---GLPRNGASALGG----NAA------LSVVDSKGALQSLTKA-LAQATSLLR-SAGLST--- 197 (253)
Q Consensus 142 -~l~v~~-----~~~~---~~~~~~~~~~~~----~~~------~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--- 197 (253)
+-..+. +... .... ..+.++. ... ....+.+..+|+|.|| +-.+.+|++ |.+|+.
T Consensus 236 sp~va~~lq~a~~g~~~Y~Aayp-aays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivS 314 (371)
T KOG0146|consen 236 SPTVADPLQQAYAGVQQYAAAYP-AAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVS 314 (371)
T ss_pred CccccchhhhhhhhHHHHhhhcc-hhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceee
Confidence 111111 0000 0000 0000000 000 1123445889999999 666777888 888843
Q ss_pred -----Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 198 -----DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 198 -----~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
|..++..++||||.+ +.. ..||++|||..|+-++|+|.+.. ||++
T Consensus 315 aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR-Pkda 367 (371)
T KOG0146|consen 315 AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR-PKDA 367 (371)
T ss_pred eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC-cccc
Confidence 888889999998888 444 99999999999999999999988 6665
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=1.7e-22 Score=185.95 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=114.1
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
...++|||+ ||+.+++++|+++|++||+|.+|+++.|+.||+++|||||+|.+.++|+.|++.|||..+ .|+.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 457899999 999999999999999999999999999999999999999999999999999999999999 69999998
Q ss_pred Ecccc---------------ccCcCccc-----------------------------------CcEEEEEcCCHHHHHHH
Q psy882 99 IAAKL---------------EFKEGYRG-----------------------------------GQKISVQYTSPQSAAYA 128 (253)
Q Consensus 99 ~a~~~---------------~~~~~~v~-----------------------------------~g~~fv~f~~~~~A~~A 128 (253)
++... .+..+||+ ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 75431 11122222 89999999999999999
Q ss_pred HHhhCCCcCCCCCcEEEEecCC
Q psy882 129 RDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 129 ~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+..|||..+ +|+.|+|.++..
T Consensus 263 I~amNg~el-gGr~LrV~kAi~ 283 (612)
T TIGR01645 263 IASMNLFDL-GGQYLRVGKCVT 283 (612)
T ss_pred HHHhCCCee-CCeEEEEEecCC
Confidence 999999999 999999999654
No 17
>KOG0123|consensus
Probab=99.87 E-value=4.6e-22 Score=174.99 Aligned_cols=222 Identities=23% Similarity=0.242 Sum_probs=171.4
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
|++||+.|..+.+.- |||. |+++++..+|+++|+.||.|.+|+++.+. .| ++|| ||+|.+++.|++|+
T Consensus 64 ~~~~rim~s~rd~~~--------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 64 GKPIRIMWSQRDPSL--------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAI 132 (369)
T ss_pred CcEEEeehhccCCce--------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHH
Confidence 678999998774422 9999 99999999999999999999999999996 55 8999 99999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEccccccCc------------Ccc----------------------------------cCcE
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAKLEFKE------------GYR----------------------------------GGQK 114 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~~~~~~------------~~v----------------------------------~~g~ 114 (253)
+.+||..+ .++.|.|.....++... .++ .++|
T Consensus 133 ~~~ng~ll--~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~ 210 (369)
T KOG0123|consen 133 EKLNGMLL--NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGF 210 (369)
T ss_pred HHhcCccc--CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCc
Confidence 99999999 69999998777622211 010 1899
Q ss_pred EEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCc------ccccccccccccccchh-hHHHH
Q psy882 115 ISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNA------ALSVVDSKGALQSLTKA-LAQAT 187 (253)
Q Consensus 115 ~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~n~~-~~~~~ 187 (253)
+||.|.++++|..|+..|++..+ .+..+.|..+... ..+....... ..........+++.|+. .....
T Consensus 211 gfv~f~~~e~a~~av~~l~~~~~-~~~~~~V~~aqkk----~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e 285 (369)
T KOG0123|consen 211 GFVNFENPEDAKKAVETLNGKIF-GDKELYVGRAQKK----SEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDE 285 (369)
T ss_pred cceeecChhHHHHHHHhccCCcC-Cccceeecccccc----hhhHHHHhhhhHhhhhhccccccccccccccCccccchh
Confidence 99999999999999999999998 8899999885431 1111111111 01112334567888877 44444
Q ss_pred Hhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 188 SLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 188 ~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
.|.. |..+.. +.. +...|||+|.+ ... .+|+..+||..++|++|.|.++. .+++
T Consensus 286 ~L~~~f~~~GeI~s~kv~~~~~-g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q-r~~~ 351 (369)
T KOG0123|consen 286 KLRKIFSSFGEITSAKVMVDEN-GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ-RKED 351 (369)
T ss_pred HHHHHHhcccceeeEEEEeccC-CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh-hhcc
Confidence 4444 777633 333 57779998888 433 99999999999999999999999 7777
No 18
>KOG0148|consensus
Probab=99.86 E-value=1.5e-21 Score=158.89 Aligned_cols=207 Identities=11% Similarity=0.023 Sum_probs=133.2
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCC--------CCCcc------cEEEEEecCHH----HHHHHH
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN--------TGESK------GVAYIRFSKTS----EAAKAV 80 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~--------tg~~~------g~~fV~f~~~~----~A~~ai 80 (253)
..-++|||+ |...+||+-|-.+|+++|+|+.|+|+.+.. ..+++ =.-||.+-+.+ +-+.|.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF 83 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF 83 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHh
Confidence 345899999 999999999999999999999999988730 00010 11222222111 111111
Q ss_pred HHhCCcccCCCCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCC
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASA 160 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~ 160 (253)
..+ |.. ...+|-... .---+||||||.|.++++|+.||..|||.+| ++|.||-.|+..+.. +.+...
T Consensus 84 ~pF-Gev-----S~akvirD~-----~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl-G~R~IRTNWATRKp~-e~n~~~ 150 (321)
T KOG0148|consen 84 APF-GEV-----SDAKVIRDM-----NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL-GRRTIRTNWATRKPS-EMNGKP 150 (321)
T ss_pred ccc-ccc-----ccceEeecc-----cCCcccceeEEeccchHHHHHHHHHhCCeee-ccceeeccccccCcc-ccCCCC
Confidence 100 000 000000000 0112399999999999999999999999999 999999999765420 000000
Q ss_pred -CCCCcccccccccccccccchhh-HHHHHhhh-hcCCCCChhh--hccccchhhhh--HHH-HHHHHHhcCceecCeEE
Q psy882 161 -LGGNAALSVVDSKGALQSLTKAL-AQATSLLR-SAGLSTDSRF--ISRLRLDDFIY--YIL-VEFSQTLHGAEMYGSRL 232 (253)
Q Consensus 161 -~~~~~~~~~~~~~~~~~v~n~~~-~~~~~l~~-~~~~~~~~~~--~~~~~fg~v~~--~~~-~~Ai~~lnG~~i~G~~l 232 (253)
-.....-+..+.+..+++.|++. ..+..+.+ |++|..-.++ =+..||+||.| ++. .+||..|||.+|+|..|
T Consensus 151 ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~V 230 (321)
T KOG0148|consen 151 LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLV 230 (321)
T ss_pred ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEE
Confidence 00001122234457789999984 44555566 9999764443 34449998888 444 99999999999999999
Q ss_pred EEEecCC
Q psy882 233 KVMEADP 239 (253)
Q Consensus 233 ~v~~a~~ 239 (253)
+|+|.+.
T Consensus 231 kCsWGKe 237 (321)
T KOG0148|consen 231 RCSWGKE 237 (321)
T ss_pred EEecccc
Confidence 9999995
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=9.2e-21 Score=167.37 Aligned_cols=98 Identities=33% Similarity=0.534 Sum_probs=83.9
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.. ..+....++|||+ ||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|+.|+
T Consensus 72 g~~i~v~~a~~---~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai 148 (352)
T TIGR01661 72 NKTIKVSYARP---SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAI 148 (352)
T ss_pred CeeEEEEeecc---cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 56677776643 2233456789999 9999999999999999999999999999888999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEccc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
+.|+|..+.+.+..|.|.++..
T Consensus 149 ~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 149 KTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred HHhCCCccCCCceeEEEEECCC
Confidence 9999998865557899988753
No 20
>KOG0123|consensus
Probab=99.83 E-value=1.2e-19 Score=159.77 Aligned_cols=199 Identities=25% Similarity=0.254 Sum_probs=152.3
Q ss_pred cEEEEEcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccc
Q psy882 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 23 ~~lfv~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
..|||| +++||.+|++.|+++|+|.++++.+|. | +.|||||.|.++.+|++|++.+|...+ .|++|++.|+..
T Consensus 2 ~sl~vg--~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG--PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQR 74 (369)
T ss_pred CceecC--CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhcc
Confidence 458887 899999999999999999999999997 6 999999999999999999999999999 799999999887
Q ss_pred cccC-------c--------------Cc-----------ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 103 LEFK-------E--------------GY-----------RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 103 ~~~~-------~--------------~~-----------v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+.-. . |. ..+|| ||+|.+.++|.+|+..|||..+ .|+.|.|.....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll-~~kki~vg~~~~ 152 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL-NGKKIYVGLFER 152 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc-CCCeeEEeeccc
Confidence 2211 0 11 13899 9999999999999999999999 999999988433
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HH
Q psy882 151 YGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VE 217 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~ 217 (253)
...+..+... ..+.. ..+++.|.+ +..+..+.. |..++ .+.. +...+||||.+ ... ..
T Consensus 153 ----~~er~~~~~~-~~~~~---t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~ 223 (369)
T KOG0123|consen 153 ----KEEREAPLGE-YKKRF---TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKK 223 (369)
T ss_pred ----hhhhcccccc-hhhhh---hhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHH
Confidence 2222222222 21111 235566666 333333333 44442 2333 55679998888 433 99
Q ss_pred HHHHhcCceecCeEEEEEecCC
Q psy882 218 FSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 218 Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
|++.|||..+.|..+.|.-+..
T Consensus 224 av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 224 AVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred HHHhccCCcCCccceeeccccc
Confidence 9999999999999999998883
No 21
>KOG0145|consensus
Probab=99.81 E-value=1.5e-19 Score=146.55 Aligned_cols=143 Identities=29% Similarity=0.392 Sum_probs=122.8
Q ss_pred CcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy882 3 RNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81 (253)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~ 81 (253)
+.||+..+.. +++.-....|||. ||+.+|..+|+++|++||.|..-+|+-|..||.++|.+||.|...++|+.||.
T Consensus 111 KTIKVSyARP---Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 111 KTIKVSYARP---SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred ceEEEEeccC---ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 3455555533 4555667889999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccCCCCCcEEEEEccccccCc--------------Cccc------------------------------------
Q psy882 82 EMNGEFLPNHSKPIKVLIAAKLEFKE--------------GYRG------------------------------------ 111 (253)
Q Consensus 82 ~l~~~~~~~~g~~i~v~~a~~~~~~~--------------~~v~------------------------------------ 111 (253)
.|||..-.++..+|.|.++.....+. .|.+
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~ 267 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLA 267 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceee
Confidence 99999988888999999987721111 0000
Q ss_pred ----------------------------------------------------CcEEEEEcCCHHHHHHHHHhhCCCcCCC
Q psy882 112 ----------------------------------------------------GQKISVQYTSPQSAAYARDKFHGFAYPP 139 (253)
Q Consensus 112 ----------------------------------------------------~g~~fv~f~~~~~A~~A~~~l~g~~~~~ 139 (253)
+|||||...+.++|.+|+..|||..+ +
T Consensus 268 ~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l-g 346 (360)
T KOG0145|consen 268 GVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL-G 346 (360)
T ss_pred eeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc-c
Confidence 89999999999999999999999999 9
Q ss_pred CCcEEEEecC
Q psy882 140 GIPMVVVPDF 149 (253)
Q Consensus 140 g~~l~v~~~~ 149 (253)
++.|.|.|..
T Consensus 347 ~rvLQVsFKt 356 (360)
T KOG0145|consen 347 DRVLQVSFKT 356 (360)
T ss_pred ceEEEEEEec
Confidence 9999999954
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.81 E-value=4.7e-19 Score=163.82 Aligned_cols=125 Identities=24% Similarity=0.342 Sum_probs=110.1
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~~ 371 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQR 371 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEE
Confidence 45799999 999999999999999999999999999999999999999999999999999999999999 699999998
Q ss_pred ccccc---------------------------------------------------------------cCc-Ccc-----
Q psy882 100 AAKLE---------------------------------------------------------------FKE-GYR----- 110 (253)
Q Consensus 100 a~~~~---------------------------------------------------------------~~~-~~v----- 110 (253)
+.... |.. |.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 74300 000 111
Q ss_pred -----------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 -----------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 -----------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
+.|++||+|.+.++|.+|+..|||..+ .|+.|.+.|-
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~-~gr~v~~~~~ 499 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF-NDRVVVAAFY 499 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEEe
Confidence 047899999999999999999999999 9999999993
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=2.7e-18 Score=156.84 Aligned_cols=80 Identities=41% Similarity=0.668 Sum_probs=75.7
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+..++|||+ ||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~ 261 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVG 261 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEE
Confidence 447899999 999999999999999999999999999999999999999999999999999999999988 69999999
Q ss_pred Ecc
Q psy882 99 IAA 101 (253)
Q Consensus 99 ~a~ 101 (253)
|+.
T Consensus 262 ~a~ 264 (457)
T TIGR01622 262 YAQ 264 (457)
T ss_pred Ecc
Confidence 953
No 24
>KOG0131|consensus
Probab=99.79 E-value=8.3e-19 Score=135.31 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=112.4
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
...+|||+ |+..++++-|.++|-+.|+|.++++++|+.+...+||||++|.++++|+-|++.||...+ .|++|+|..
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv~k 85 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRVNK 85 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEEEe
Confidence 45789999 999999999999999999999999999999999999999999999999999999998888 599999999
Q ss_pred ccccccCc-----Ccc------------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCC
Q psy882 100 AAKLEFKE-----GYR------------------------------------GGQKISVQYTSPQSAAYARDKFHGFAYP 138 (253)
Q Consensus 100 a~~~~~~~-----~~v------------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~ 138 (253)
+....-+- .+| .++||||.|.+.+.+.+|+..|||..+
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 88411000 111 178999999999999999999999999
Q ss_pred CCCcEEEEecCC
Q psy882 139 PGIPMVVVPDFS 150 (253)
Q Consensus 139 ~g~~l~v~~~~~ 150 (253)
..+++.|.++..
T Consensus 165 ~nr~itv~ya~k 176 (203)
T KOG0131|consen 165 CNRPITVSYAFK 176 (203)
T ss_pred cCCceEEEEEEe
Confidence 999999999553
No 25
>KOG0124|consensus
Probab=99.79 E-value=1.6e-19 Score=152.65 Aligned_cols=123 Identities=28% Similarity=0.418 Sum_probs=114.0
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
+|+|||| +.++..|+.|+..|..||+|++|.+..|+.|++++|||||+|.-++.|..|++.+||..+ .||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccCC
Confidence 6899999 999999999999999999999999999999999999999999999999999999999999 5999999877
Q ss_pred cc---------------cccCcCccc-----------------------------------CcEEEEEcCCHHHHHHHHH
Q psy882 101 AK---------------LEFKEGYRG-----------------------------------GQKISVQYTSPQSAAYARD 130 (253)
Q Consensus 101 ~~---------------~~~~~~~v~-----------------------------------~g~~fv~f~~~~~A~~A~~ 130 (253)
.. +.|...||. ||||||+|.+.++-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 65 344445543 9999999999999999999
Q ss_pred hhCCCcCCCCCcEEEEe
Q psy882 131 KFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 131 ~l~g~~~~~g~~l~v~~ 147 (253)
.||-+.+ +|..|+|.-
T Consensus 271 sMNlFDL-GGQyLRVGk 286 (544)
T KOG0124|consen 271 SMNLFDL-GGQYLRVGK 286 (544)
T ss_pred hcchhhc-ccceEeccc
Confidence 9999999 999999987
No 26
>KOG0117|consensus
Probab=99.77 E-value=3.8e-18 Score=147.60 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=113.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc-eEEEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN-IQEIRCVKDRN-TGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~-v~~i~i~~~~~-tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
-+-.+|+|||+ +|+++++++|.+.+++.++ |.+|.+..++. ..++||||||+|.++..|..|-++|-...|..-|+.
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 34568999999 9999999999999998775 67887777763 457899999999999999999998876665557999
Q ss_pred EEEEEcccccc---------CcCccc---------------------------CcEEEEEcCCHHHHHHHHHhhCCCcCC
Q psy882 95 IKVLIAAKLEF---------KEGYRG---------------------------GQKISVQYTSPQSAAYARDKFHGFAYP 138 (253)
Q Consensus 95 i~v~~a~~~~~---------~~~~v~---------------------------~g~~fv~f~~~~~A~~A~~~l~g~~~~ 138 (253)
+.|.||.++.- +.+||. |.||||+|.++++|.+|++.|||+.|
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkel- 318 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKEL- 318 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCcee-
Confidence 99999999322 224443 88999999999999999999999999
Q ss_pred CCCcEEEEecCCC
Q psy882 139 PGIPMVVVPDFSY 151 (253)
Q Consensus 139 ~g~~l~v~~~~~~ 151 (253)
.|..|.|.++++.
T Consensus 319 dG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 319 DGSPIEVTLAKPV 331 (506)
T ss_pred cCceEEEEecCCh
Confidence 9999999997764
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.77 E-value=8.7e-18 Score=154.66 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=105.4
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCc-eEEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGN-IQEIRCV-KDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~-v~~i~i~-~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...++|||+ ||+++++++|.+.|++++. +.++.+. .....++++|||||+|.++++|..|++.|+...+...|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 346899999 9999999999999999864 4444433 333457889999999999999999999886543222699999
Q ss_pred EEEcccccc---------CcCccc-----------------------------CcEEEEEcCCHHHHHHHHHhhCCCcCC
Q psy882 97 VLIAAKLEF---------KEGYRG-----------------------------GQKISVQYTSPQSAAYARDKFHGFAYP 138 (253)
Q Consensus 97 v~~a~~~~~---------~~~~v~-----------------------------~g~~fv~f~~~~~A~~A~~~l~g~~~~ 138 (253)
|.|+.++.. +.+||. ++||||+|.+.++|.+|+..|||..|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i- 294 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKEL- 294 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEE-
Confidence 999887321 112221 88999999999999999999999999
Q ss_pred CCCcEEEEecCCC
Q psy882 139 PGIPMVVVPDFSY 151 (253)
Q Consensus 139 ~g~~l~v~~~~~~ 151 (253)
.|+.|+|.|+.+.
T Consensus 295 ~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 295 EGSEIEVTLAKPV 307 (578)
T ss_pred CCEEEEEEEccCC
Confidence 9999999997654
No 28
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=4.3e-17 Score=125.83 Aligned_cols=82 Identities=29% Similarity=0.539 Sum_probs=77.8
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
..+++|||+ ||+.++|++|+++|++||.|.+|.++.++.|++++|||||+|.+.++|+.|++.|++..+ .|+.|+|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 346889999 999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred Ecccc
Q psy882 99 IAAKL 103 (253)
Q Consensus 99 ~a~~~ 103 (253)
++..+
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 99764
No 29
>KOG0144|consensus
Probab=99.73 E-value=1e-17 Score=144.32 Aligned_cols=98 Identities=29% Similarity=0.498 Sum_probs=83.2
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
.-++++.++.... +.-...++|||+ |+..+||.+++++|++||.|.+|.|++|. .+.+||||||.|.+.+-|..||
T Consensus 106 ~~pvqvk~Ad~E~--er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 106 HHPVQVKYADGER--ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred Ccceeecccchhh--hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 3345555553322 222457899999 99999999999999999999999999996 7899999999999999999999
Q ss_pred HHhCCc-ccCCCCCcEEEEEccc
Q psy882 81 EEMNGE-FLPNHSKPIKVLIAAK 102 (253)
Q Consensus 81 ~~l~~~-~~~~~g~~i~v~~a~~ 102 (253)
+.|||. .+.++..+|.|.||++
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred HhhccceeeccCCCceEEEeccc
Confidence 999996 4666889999999999
No 30
>KOG0109|consensus
Probab=99.68 E-value=1.6e-16 Score=130.92 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=104.7
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
-+|||+ ||..+++.+|+.+|++||.|.+|.|+.+ ||||..++...|+-||..|+|..+ .|..|.|+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 469999 9999999999999999999999999966 999999999999999999999999 79999999988
Q ss_pred cccc--Cc---Ccc------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 102 KLEF--KE---GYR------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 102 ~~~~--~~---~~v------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+.- -+ |.+ -|+|+||+|...++|..|++.|++..+ .|++|.|..+.+
T Consensus 73 sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~-~gk~m~vq~sts 149 (346)
T KOG0109|consen 73 SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEF-QGKRMHVQLSTS 149 (346)
T ss_pred ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhccccccc-ccceeeeeeecc
Confidence 7411 11 222 199999999999999999999999999 999999999654
No 31
>KOG0147|consensus
Probab=99.67 E-value=1.8e-17 Score=146.80 Aligned_cols=126 Identities=24% Similarity=0.416 Sum_probs=111.0
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+++..+++|+- |+...++.+|+++|+.+|.|.+|+++.|+.++.++|.|||+|.+.+..-.|| .|.|..+ .|.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 45567999999 9999999999999999999999999999999999999999999999999998 5899988 599999
Q ss_pred EEEccccccCc------------------Cccc-----------------------------------CcEEEEEcCCHH
Q psy882 97 VLIAAKLEFKE------------------GYRG-----------------------------------GQKISVQYTSPQ 123 (253)
Q Consensus 97 v~~a~~~~~~~------------------~~v~-----------------------------------~g~~fv~f~~~~ 123 (253)
|..+..++-.. .||+ +|||||+|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 98766511100 1222 899999999999
Q ss_pred HHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 124 SAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 124 ~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+|..|+..|||.+| .|+.|+|..
T Consensus 332 ~ar~a~e~lngfel-AGr~ikV~~ 354 (549)
T KOG0147|consen 332 DARKALEQLNGFEL-AGRLIKVSV 354 (549)
T ss_pred HHHHHHHHhcccee-cCceEEEEE
Confidence 99999999999999 999999987
No 32
>KOG0110|consensus
Probab=99.66 E-value=8.6e-16 Score=139.74 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=152.3
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCccc-EEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG-VAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g-~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
..+..+.++|+ ||..+..++|..+|..||+|..+.++ + .| .++|+|.+..+|..|...|....+ ..-++
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-----~G~~aiv~fl~p~eAr~Afrklaysr~--k~~pl 451 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-----GGTGAIVEFLNPLEARKAFRKLAYSRF--KSAPL 451 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-----ccceeeeeecCccchHHHHHHhchhhh--ccCcc
Confidence 55667889999 99999999999999999999988443 3 33 499999999999999999998888 57788
Q ss_pred EEEEccccccCc------------------------------------------------------Ccc-----------
Q psy882 96 KVLIAAKLEFKE------------------------------------------------------GYR----------- 110 (253)
Q Consensus 96 ~v~~a~~~~~~~------------------------------------------------------~~v----------- 110 (253)
++.|+..+.|.. .|+
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 888876633330 011
Q ss_pred ---------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCC
Q psy882 111 ---------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGG 163 (253)
Q Consensus 111 ---------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 163 (253)
+.|||||+|.+.++|..|++.|+|..+ .|+.|.|.++.+. ...-++
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl-dGH~l~lk~S~~k------~~~~~g 604 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL-DGHKLELKISENK------PASTVG 604 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee-cCceEEEEeccCc------cccccc
Confidence 049999999999999999999999999 9999999996521 011111
Q ss_pred Ccccccccccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh---HHHHHHHHHhcCceecCe
Q psy882 164 NAALSVVDSKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY---YILVEFSQTLHGAEMYGS 230 (253)
Q Consensus 164 ~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~---~~~~~Ai~~lnG~~i~G~ 230 (253)
...+.. .....|.|.|+| ...-..+.+ |..| |.........|||||.+ ....+|+.+|.++.+.||
T Consensus 605 K~~~~k-k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 605 KKKSKK-KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred cccccc-cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceech
Confidence 111111 114578999999 433333344 5555 33323233458897777 334999999999999999
Q ss_pred EEEEEecCC
Q psy882 231 RLKVMEADP 239 (253)
Q Consensus 231 ~l~v~~a~~ 239 (253)
+|-+.||+.
T Consensus 684 rLVLEwA~~ 692 (725)
T KOG0110|consen 684 RLVLEWAKS 692 (725)
T ss_pred hhheehhcc
Confidence 999999983
No 33
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=3.1e-15 Score=131.09 Aligned_cols=100 Identities=24% Similarity=0.481 Sum_probs=86.4
Q ss_pred CCCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 1 MDRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
+++++++.++.... +....++|||+ ||+.+++++|+++|++||.|..++|++++.+++++|||||+|.+.++|++|
T Consensus 175 ~gr~i~V~~a~p~~---~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 175 RNKRLKVSYARPGG---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred CCceeeeecccccc---cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 36777887764322 23356789999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccCCCCCcEEEEEcccc
Q psy882 80 VEEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 80 i~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
|+.|++..+.+.+++|+|.++...
T Consensus 252 i~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHhCCCccCCCceeEEEEECCcc
Confidence 999999988544579999998753
No 34
>KOG0122|consensus
Probab=99.60 E-value=3.9e-15 Score=120.05 Aligned_cols=82 Identities=29% Similarity=0.499 Sum_probs=78.5
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.+.++|=|. ||.+++|.+|+++|.+||.|..+.|.+|+.||.++|||||.|.+.++|.+||+.|||.-+ ++-.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEE
Confidence 367889999 999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred Ecccc
Q psy882 99 IAAKL 103 (253)
Q Consensus 99 ~a~~~ 103 (253)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=7.2e-15 Score=98.97 Aligned_cols=69 Identities=39% Similarity=0.744 Sum_probs=65.0
Q ss_pred EEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
|||+ ||.++++++|+++|++||.|..+.++.+ .++.++|+|||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 7999 9999999999999999999999999998 5889999999999999999999999999999 588775
No 36
>KOG0110|consensus
Probab=99.58 E-value=8.3e-15 Score=133.41 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=106.9
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTG---ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg---~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.++|||. |++.++.++|..+|...|.|.++.|...+.-. .|.|||||+|.+.++|+.|++.|+|..+ +|+.|.|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH~l~l 592 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL--DGHKLEL 592 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee--cCceEEE
Confidence 4559999 99999999999999999999999887665321 3559999999999999999999999999 8999999
Q ss_pred EEccccccC-------------cCcc-----------------------------------cCcEEEEEcCCHHHHHHHH
Q psy882 98 LIAAKLEFK-------------EGYR-----------------------------------GGQKISVQYTSPQSAAYAR 129 (253)
Q Consensus 98 ~~a~~~~~~-------------~~~v-----------------------------------~~g~~fv~f~~~~~A~~A~ 129 (253)
.++....-. ++.| .||||||.|.++++|..|+
T Consensus 593 k~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 593 KISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred EeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 998820000 0000 1899999999999999999
Q ss_pred HhhCCCcCCCCCcEEEEecCC
Q psy882 130 DKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 130 ~~l~g~~~~~g~~l~v~~~~~ 150 (253)
..|.+..| .||+|.++|+.+
T Consensus 673 ~al~STHl-yGRrLVLEwA~~ 692 (725)
T KOG0110|consen 673 DALGSTHL-YGRRLVLEWAKS 692 (725)
T ss_pred Hhhcccce-echhhheehhcc
Confidence 99999999 999999999764
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=2.2e-14 Score=132.69 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=76.8
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
..++|||+ ||+++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|..|++.||+..+ .|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEe
Confidence 45799999 999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
+.+
T Consensus 281 Ai~ 283 (612)
T TIGR01645 281 CVT 283 (612)
T ss_pred cCC
Confidence 886
No 38
>KOG0149|consensus
Probab=99.55 E-value=7.9e-15 Score=117.81 Aligned_cols=81 Identities=23% Similarity=0.489 Sum_probs=72.5
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
+-.-++|||+ |+|.+..++|++.|++||+|.+..|+.|+.||+|+|||||+|.+.+.|++|++. ..-.| +||...|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piI--dGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPII--DGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcc--ccccccc
Confidence 3456899999 999999999999999999999999999999999999999999999999999975 34455 7888888
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
..|.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 87754
No 39
>KOG0121|consensus
Probab=99.55 E-value=1.3e-14 Score=105.95 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=77.3
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
....+++|||+ |++.++|+.|+++|+.+|+|..|.+-.|+.+....|||||+|.+.++|+.|+.-++|..+ +.++|+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir 109 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIR 109 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--ccccee
Confidence 35678999999 999999999999999999999999999998888899999999999999999999999999 799999
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
+.|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99975
No 40
>KOG0113|consensus
Probab=99.55 E-value=2.8e-14 Score=118.10 Aligned_cols=83 Identities=30% Similarity=0.511 Sum_probs=78.5
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...|-+||||+ |+.+++|..|+..|+.||+|..|+||+|+.||+++|||||+|..+-+-..|-+..+|..| +|+.|-
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I--dgrri~ 174 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI--DGRRIL 174 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee--cCcEEE
Confidence 34578999999 999999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.+-..
T Consensus 175 VDvERg 180 (335)
T KOG0113|consen 175 VDVERG 180 (335)
T ss_pred EEeccc
Confidence 988665
No 41
>KOG0147|consensus
Probab=99.54 E-value=3.1e-14 Score=126.53 Aligned_cols=82 Identities=39% Similarity=0.621 Sum_probs=75.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..|...|||+ |-+++++++|+.+|++||.|..|.+++|..||.++|||||+|.+.++|.+|++.|||..+ .|+.|+|
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV 352 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKV 352 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEE
Confidence 4566679999 999999999999999999999999999999999999999999999999999999999666 8999999
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
.....
T Consensus 353 ~~v~~ 357 (549)
T KOG0147|consen 353 SVVTE 357 (549)
T ss_pred EEeee
Confidence 76544
No 42
>KOG1190|consensus
Probab=99.54 E-value=2e-14 Score=123.46 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=97.3
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+++.|.++ ||++++|.+|.+++.+||.|..+.+... +..||++|.+.+.|-..+..+....--..|++|.|.|
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 78999999 9999999999999999999999988766 3489999999999877554433332222688888888
Q ss_pred ccccccCc------------------------------------------------------------------Cccc--
Q psy882 100 AAKLEFKE------------------------------------------------------------------GYRG-- 111 (253)
Q Consensus 100 a~~~~~~~------------------------------------------------------------------~~v~-- 111 (253)
+....++. |+|-
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 66522221 1110
Q ss_pred ------CcE-EEEEcCCHHHHHHHHHhhCCCcCCCC-CcEEEEec
Q psy882 112 ------GQK-ISVQYTSPQSAAYARDKFHGFAYPPG-IPMVVVPD 148 (253)
Q Consensus 112 ------~g~-~fv~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~~ 148 (253)
.+| |+|+|.+.+.|..|...|+|..|+.| |+|+|.|+
T Consensus 181 iTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 181 ITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 667 99999999999999999999999888 79999993
No 43
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.8e-13 Score=92.40 Aligned_cols=69 Identities=33% Similarity=0.698 Sum_probs=62.8
Q ss_pred EEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
|||+ ||+++++++|+++|+.+|.|..+++..++. +.++|+|||+|.+.++|..|++.+++..+ .|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 7999 999999999999999999999999999986 89999999999999999999999988988 687764
No 44
>KOG0107|consensus
Probab=99.48 E-value=1e-13 Score=106.67 Aligned_cols=76 Identities=20% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
-.++|||+ |+..+++.+|+..|..||+|.+|+|.+.+ .|||||+|.+.-+|+.|+..|+|..+ +|..|+|+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEEe
Confidence 47899999 99999999999999999999999998887 89999999999999999999999999 899999999
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+...
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 8864
No 45
>KOG0127|consensus
Probab=99.48 E-value=3e-13 Score=120.12 Aligned_cols=78 Identities=31% Similarity=0.490 Sum_probs=72.7
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.-+|.|+ ||+.|...+|+.+|+.||.|.+|.|++.+ .|+..|||||.|....+|..|++.+|+..| .|++|-|.||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5679999 99999999999999999999999999877 455569999999999999999999999999 7999999999
Q ss_pred cc
Q psy882 101 AK 102 (253)
Q Consensus 101 ~~ 102 (253)
-+
T Consensus 194 V~ 195 (678)
T KOG0127|consen 194 VD 195 (678)
T ss_pred cc
Confidence 88
No 46
>KOG1456|consensus
Probab=99.47 E-value=6.5e-13 Score=113.09 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=104.3
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
++...+++-.|.|+ |-..++|.+|.+.++.||+|..+.++.. +..+.|+|.+.+.|+.|+.---...+...|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCc
Confidence 55666788999999 9999999999999999999999877765 5689999999999999987544444444677
Q ss_pred cEEEEEccccccCc-----------------------------------Ccc-------cCcE-EEEEcCCHHHHHHHHH
Q psy882 94 PIKVLIAAKLEFKE-----------------------------------GYR-------GGQK-ISVQYTSPQSAAYARD 130 (253)
Q Consensus 94 ~i~v~~a~~~~~~~-----------------------------------~~v-------~~g~-~fv~f~~~~~A~~A~~ 130 (253)
..-+.++..+.... |.| ++|. |.|+|.+.+.|++|..
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHh
Confidence 77778875532222 000 1554 9999999999999999
Q ss_pred hhCCCcCCCC-CcEEEEecCC
Q psy882 131 KFHGFAYPPG-IPMVVVPDFS 150 (253)
Q Consensus 131 ~l~g~~~~~g-~~l~v~~~~~ 150 (253)
.|||..|+.| ++|+|+|+++
T Consensus 178 alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred hcccccccccceeEEEEecCc
Confidence 9999999888 7999999554
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=5.1e-13 Score=110.66 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=69.6
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.++|||+ ||+.+++++|+++|+.||.|.+|.|++++. ++|||||+|.+.++|+.|+. |+|..+ .|+.|.|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee--CCceEEEEec
Confidence 5799999 999999999999999999999999999863 57999999999999999995 999999 6999999998
Q ss_pred cc
Q psy882 101 AK 102 (253)
Q Consensus 101 ~~ 102 (253)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 74
No 48
>KOG0111|consensus
Probab=99.43 E-value=1.3e-13 Score=109.61 Aligned_cols=86 Identities=29% Similarity=0.527 Sum_probs=81.4
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
-..++|||+ |..+++|.-|...|=+||.|.+|+++.|-.++++||||||+|...++|..||..+|+..+ .|+.|+|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 356899999 999999999999999999999999999999999999999999999999999999999999 69999999
Q ss_pred EccccccCc
Q psy882 99 IAAKLEFKE 107 (253)
Q Consensus 99 ~a~~~~~~~ 107 (253)
+|.|...+.
T Consensus 86 ~AkP~kike 94 (298)
T KOG0111|consen 86 LAKPEKIKE 94 (298)
T ss_pred ecCCccccC
Confidence 999966655
No 49
>KOG0125|consensus
Probab=99.42 E-value=6.4e-13 Score=111.44 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=73.0
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.-++|+|. ||+..-|-||+.+|++||.|.+|.|+.+ -.-|||||||+|.+.+||++|-++|+|..+ .||+|.|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkIEVn~ 170 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVV--EGRKIEVNN 170 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhccee--eceEEEEec
Confidence 34789999 9999999999999999999999998877 346799999999999999999999999999 799999999
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8873
No 50
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=1.1e-12 Score=115.42 Aligned_cols=78 Identities=28% Similarity=0.448 Sum_probs=72.1
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCH--HHHHHHHHHhCCcccCCCCCcE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT--SEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~--~~A~~ai~~l~~~~~~~~g~~i 95 (253)
.....+|||| |++.+++++|..+|+.||.|.+|.|++. +| ||||||+|... .++.+||..|||..+ .|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCcee
Confidence 3456889999 9999999999999999999999999955 77 99999999987 789999999999999 79999
Q ss_pred EEEEccc
Q psy882 96 KVLIAAK 102 (253)
Q Consensus 96 ~v~~a~~ 102 (253)
+|..|.+
T Consensus 81 KVNKAKP 87 (759)
T PLN03213 81 RLEKAKE 87 (759)
T ss_pred EEeeccH
Confidence 9999988
No 51
>KOG0126|consensus
Probab=99.40 E-value=4.2e-14 Score=109.38 Aligned_cols=80 Identities=28% Similarity=0.475 Sum_probs=76.0
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.++.-|||| ||+..||.+|.-+|++||+|.+|.+++|+.||+|+||||+.|.+.-..-.|+..|||..+ .|+.|+|.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 457889999 999999999999999999999999999999999999999999999999999999999999 69999998
Q ss_pred Ecc
Q psy882 99 IAA 101 (253)
Q Consensus 99 ~a~ 101 (253)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 765
No 52
>KOG4207|consensus
Probab=99.40 E-value=4.1e-13 Score=105.93 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+.+...+..|-|- |-..++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|++.|+|.++ +|+.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRe 84 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRE 84 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccce
Confidence 3445567889999 999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEEccc
Q psy882 95 IKVLIAAK 102 (253)
Q Consensus 95 i~v~~a~~ 102 (253)
|+|+.|.-
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99988763
No 53
>KOG0131|consensus
Probab=99.38 E-value=6.3e-13 Score=102.94 Aligned_cols=98 Identities=29% Similarity=0.470 Sum_probs=87.5
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE-EEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE-IRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~-i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
||+||+|.++....+. +-+.+|||+ |.++++|..|+.+|+.||.+.. -.++++++||+++|+|||.|.+.+.+.+|
T Consensus 78 grpIrv~kas~~~~nl--~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 78 GRPIRVNKASAHQKNL--DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred CceeEEEecccccccc--cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 7899999998544333 344899999 9999999999999999999865 48999999999999999999999999999
Q ss_pred HHHhCCcccCCCCCcEEEEEcccc
Q psy882 80 VEEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 80 i~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
+.++||..+ +.++|.|.++..+
T Consensus 156 i~s~ngq~l--~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 156 IGSMNGQYL--CNRPITVSYAFKK 177 (203)
T ss_pred HHHhccchh--cCCceEEEEEEec
Confidence 999999999 7999999998653
No 54
>KOG4206|consensus
Probab=99.38 E-value=6e-12 Score=100.98 Aligned_cols=125 Identities=25% Similarity=0.414 Sum_probs=104.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHH----hhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQ----GFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~----~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
..++.+|||. |+..+.-++|++ +|++||.|.+|..... .+.+|.|||.|.+.+.|..|+..|+|..+ .|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK 80 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPF--YGK 80 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcc--cCc
Confidence 3455599999 999999999887 9999999999876654 58899999999999999999999999999 499
Q ss_pred cEEEEEcccc--ccCc---------------------------C--c-----------------------c---------
Q psy882 94 PIKVLIAAKL--EFKE---------------------------G--Y-----------------------R--------- 110 (253)
Q Consensus 94 ~i~v~~a~~~--~~~~---------------------------~--~-----------------------v--------- 110 (253)
++++.||..+ .+.+ | + +
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 9999999871 0000 0 0 0
Q ss_pred ---------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 ---------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ---------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
..+.|||+|.+...|..|...++|..+.....|.|.++
T Consensus 161 e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 07789999999999999999999998866888888874
No 55
>KOG0114|consensus
Probab=99.38 E-value=4e-12 Score=89.69 Aligned_cols=77 Identities=22% Similarity=0.414 Sum_probs=70.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
-++-|||. ||+.+|.++.+++|.+||.|..|+|-..+ ..+|-|||.|++..+|++|+++|+|..+ +++.+.|.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~vly 91 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLVVLY 91 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCceEEEEe
Confidence 36889999 99999999999999999999999987766 5599999999999999999999999999 799999988
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
..+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 875
No 56
>KOG0130|consensus
Probab=99.38 E-value=1.4e-12 Score=96.35 Aligned_cols=85 Identities=26% Similarity=0.399 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
|+.+-.+-.|||. +-..++|++|.+.|..||+|++|++-.|+.||..+|||+|+|.+.++|+.|+..+||..+ .|..
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~ 143 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQN 143 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCc
Confidence 3344456789999 999999999999999999999999999999999999999999999999999999999998 5999
Q ss_pred EEEEEccc
Q psy882 95 IKVLIAAK 102 (253)
Q Consensus 95 i~v~~a~~ 102 (253)
|.|.|+..
T Consensus 144 v~VDw~Fv 151 (170)
T KOG0130|consen 144 VSVDWCFV 151 (170)
T ss_pred eeEEEEEe
Confidence 99999854
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.6e-12 Score=85.89 Aligned_cols=70 Identities=43% Similarity=0.747 Sum_probs=64.8
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
+|||+ ||..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.++|+.|++.+++..+ .|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 48999 99999999999999999999999999886 77889999999999999999999999888 5888876
No 58
>KOG4205|consensus
Probab=99.37 E-value=6.2e-13 Score=113.83 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=105.2
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
..++|||+ |+|+++++.|++.|++||+|.+|.+++|+.+++++||+||+|.+.+....++.. .-+.+ +|+.|.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCcccccee
Confidence 67999999 999999999999999999999999999999999999999999999999988764 33445 699999998
Q ss_pred ccccccCc----------Cccc-----------------------------------CcEEEEEcCCHHHHHHHHHhhCC
Q psy882 100 AAKLEFKE----------GYRG-----------------------------------GQKISVQYTSPQSAAYARDKFHG 134 (253)
Q Consensus 100 a~~~~~~~----------~~v~-----------------------------------~g~~fv~f~~~~~A~~A~~~l~g 134 (253)
+.+..... .+|+ ++|+||.|.+.+++++++ ...-
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f 160 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKF 160 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccce
Confidence 88833222 1111 999999999999999887 4456
Q ss_pred CcCCCCCcEEEEecCCC
Q psy882 135 FAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 135 ~~~~~g~~l~v~~~~~~ 151 (253)
..| .|+.+.|..+.+.
T Consensus 161 ~~~-~gk~vevkrA~pk 176 (311)
T KOG4205|consen 161 HDF-NGKKVEVKRAIPK 176 (311)
T ss_pred eee-cCceeeEeeccch
Confidence 667 8999999885543
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.2e-12 Score=84.55 Aligned_cols=70 Identities=44% Similarity=0.768 Sum_probs=64.6
Q ss_pred EE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 27 IL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 27 v~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
|+ ||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+ .|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEeC
Confidence 46 899999999999999999999999999987899999999999999999999999999888 58888763
No 60
>KOG0108|consensus
Probab=99.34 E-value=2.8e-12 Score=114.41 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=76.7
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
+.|||| +|+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.++|+.|++.|||..+ .|+.|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 899999 999999999999999999999999999999999999999999999999999999999999 59999999987
Q ss_pred cc
Q psy882 102 KL 103 (253)
Q Consensus 102 ~~ 103 (253)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 63
No 61
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=104.14 Aligned_cols=78 Identities=42% Similarity=0.738 Sum_probs=75.4
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.++|||+ ||..+++++|+++|.+||.+..+.+..++.++.++|+|||+|.+.++|..|++.+++..+ .|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 6999999 999999999999999999999999999998999999999999999999999999999999 7999999997
Q ss_pred c
Q psy882 101 A 101 (253)
Q Consensus 101 ~ 101 (253)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 5
No 62
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=1.1e-11 Score=101.17 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=68.8
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+.+.+|||+ |++.+|+++|+++|+.||.|.+|+|+++. .++++|||+|.+.++|+.|+ .|+|..+ .++.|.|.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It 76 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCIT 76 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEE
Confidence 456899999 99999999999999999999999999985 44689999999999999998 5999999 59999998
Q ss_pred Ecc
Q psy882 99 IAA 101 (253)
Q Consensus 99 ~a~ 101 (253)
.+.
T Consensus 77 ~~~ 79 (243)
T PLN03121 77 RWG 79 (243)
T ss_pred eCc
Confidence 765
No 63
>KOG4212|consensus
Probab=99.31 E-value=4.8e-11 Score=103.73 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhc-CCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFS-PFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~-~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
....+.+||+ ||+++...+|++++. +-|+|..|.++.|. +|+++|+|.|+|+++|.+++|++.||.+.+ .|++|.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~ 117 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELV 117 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEE
Confidence 3345779999 999999999999996 68999999999995 999999999999999999999999999999 799999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.-...
T Consensus 118 vKEd~d 123 (608)
T KOG4212|consen 118 VKEDHD 123 (608)
T ss_pred EeccCc
Confidence 987655
No 64
>KOG0105|consensus
Probab=99.29 E-value=1.4e-11 Score=95.72 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
..+++|||+ ||.++-|.+|+.+|-+||.|.+|.+...+ ...+||||+|.+.-+|+-||.--+|..+ +|..|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccccc--CcceEEEE
Confidence 457899999 99999999999999999999998765443 3367999999999999999999899999 79999999
Q ss_pred EccccccCc------------------------------Ccc----------------------------cCcEEEEEcC
Q psy882 99 IAAKLEFKE------------------------------GYR----------------------------GGQKISVQYT 120 (253)
Q Consensus 99 ~a~~~~~~~------------------------------~~v----------------------------~~g~~fv~f~ 120 (253)
++..-.-.. ..| ..|++.|+|.
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~ 158 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYL 158 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeee
Confidence 987711000 000 1678999999
Q ss_pred CHHHHHHHHHhhCCCcCC-CCCcEEEEe
Q psy882 121 SPQSAAYARDKFHGFAYP-PGIPMVVVP 147 (253)
Q Consensus 121 ~~~~A~~A~~~l~g~~~~-~g~~l~v~~ 147 (253)
..++-..|+.+|....+. .|.+..+..
T Consensus 159 r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred ehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999875542 454444443
No 65
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.8e-11 Score=81.26 Aligned_cols=73 Identities=42% Similarity=0.755 Sum_probs=66.7
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+|+|+ ||..+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+ .|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 48999 9999999999999999999999999988744 7789999999999999999999999988 689888864
No 66
>KOG1548|consensus
Probab=99.28 E-value=8e-11 Score=99.61 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQ--------EIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~--------~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
-++.|||. ||.++|-+++.++|+++|-|. .|++.++. .|.-+|-|++.|...+.++.|++.|++..+ .
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~--r 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL--R 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc--c
Confidence 35779999 999999999999999999874 37888886 599999999999999999999999999999 6
Q ss_pred CCcEEEEEccccccCc----------------------------------------------------------------
Q psy882 92 SKPIKVLIAAKLEFKE---------------------------------------------------------------- 107 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~---------------------------------------------------------------- 107 (253)
|+.|+|+.|.-+.-..
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999987610000
Q ss_pred -----------Cccc---------CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 108 -----------GYRG---------GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 108 -----------~~v~---------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
|-|. .|.+-|.|.+.++|++++..|+|..+ .||.|..+..
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f-dgRql~A~i~ 349 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF-DGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee-cceEEEEEEe
Confidence 0000 77899999999999999999999999 9999998773
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.9e-11 Score=82.62 Aligned_cols=61 Identities=28% Similarity=0.641 Sum_probs=55.0
Q ss_pred HHHHHHhhc----CCCceEEEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 35 EDDLRQGFS----PFGNIQEIR-CVKDRNT--GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 35 e~~l~~~f~----~~G~v~~i~-i~~~~~t--g~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
+++|+++|+ +||.|.++. ++.++.+ +.++|+|||+|.+.++|..|++.|||..+ .|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 578888888 999999995 7777767 89999999999999999999999999999 7998876
No 68
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=3e-11 Score=77.93 Aligned_cols=56 Identities=36% Similarity=0.726 Sum_probs=50.8
Q ss_pred HHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 38 LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 38 l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
|+++|++||.|..+.+...+ +++|||+|.+.++|+.|++.|||..+ .|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999987763 69999999999999999999999999 6999999986
No 69
>KOG0415|consensus
Probab=99.23 E-value=1.7e-11 Score=103.89 Aligned_cols=86 Identities=28% Similarity=0.482 Sum_probs=81.3
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
+..-.||-+.|||. |.+-+++++|.-+|+.||.|.+|.|++|..||.+.-||||+|.+.+.+++|.-.|++..| +.+
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDr 309 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDR 309 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccc
Confidence 45567899999999 999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|.|.++++
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999999874
No 70
>KOG4208|consensus
Probab=99.19 E-value=9.4e-11 Score=92.79 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=76.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCC-CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPF-GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~-G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
.......+|+. +|....+.++...|.++ |.|+.+++-|++.||+|+|||||+|.+++.|+-|.+.||+..+ .++.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL 122 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLL 122 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhhee
Confidence 34456778999 99999999999999987 7888888889999999999999999999999999999999999 59999
Q ss_pred EEEEcccc
Q psy882 96 KVLIAAKL 103 (253)
Q Consensus 96 ~v~~a~~~ 103 (253)
.|.+-.++
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987765
No 71
>KOG0124|consensus
Probab=99.17 E-value=1.5e-10 Score=98.60 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.-.+|||. +-++.+|+||+.+|+.||+|..|.+.+++..+.++||+|++|.+...-..|+..+|=..+ .|.-++|..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEeccc
Confidence 45899999 999999999999999999999999999998889999999999999999999999987777 588999977
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
+..
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 655
No 72
>KOG0106|consensus
Probab=99.16 E-value=4.5e-11 Score=96.69 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=96.9
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
..+||+ ||+.+.+.+|..+|..||.+.++.+. .||+||+|.+.-+|.-|+..|++..+ ++..+.|+|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l--~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKEL--CGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCcee--cceeeeeeccc
Confidence 579999 99999999999999999999888653 56899999999999999999999999 46569999988
Q ss_pred cccc-------------Cc---------------------------------Ccc-----cCcEEEEEcCCHHHHHHHHH
Q psy882 102 KLEF-------------KE---------------------------------GYR-----GGQKISVQYTSPQSAAYARD 130 (253)
Q Consensus 102 ~~~~-------------~~---------------------------------~~v-----~~g~~fv~f~~~~~A~~A~~ 130 (253)
...- .. |-+ .++++||+|...++|.+|+.
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcch
Confidence 4100 00 101 17899999999999999999
Q ss_pred hhCCCcCCCCCcEEEEe
Q psy882 131 KFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 131 ~l~g~~~~~g~~l~v~~ 147 (253)
.|+|..+ .++.|.+..
T Consensus 152 ~l~~~~~-~~~~l~~~~ 167 (216)
T KOG0106|consen 152 KLDGKKL-NGRRISVEK 167 (216)
T ss_pred hccchhh-cCceeeecc
Confidence 9999999 999999955
No 73
>KOG0132|consensus
Probab=99.15 E-value=1.1e-10 Score=107.77 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.++||||+ |+..++|.+|..+|+.||+|.+|.++.. +|||||......+|.+|+.+|....+ .++.|+|.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc--cceeeEEee
Confidence 36999999 9999999999999999999999988766 89999999999999999999998888 799999999
Q ss_pred cccccc----Cc-CcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 100 AAKLEF----KE-GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 100 a~~~~~----~~-~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+...-- +. -.++.|+.+|-+....++..|+ +-|-.+ ++.++-+.|
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~--~egam~-d~~t~~p~~ 541 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAW--CEGAML-DGTTGPPEW 541 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHh--hhhcee-cCccCCccc
Confidence 987433 33 2356899999999988887765 346666 777777777
No 74
>KOG0146|consensus
Probab=99.14 E-value=7.2e-11 Score=96.76 Aligned_cols=87 Identities=29% Similarity=0.470 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
..+.|++|.|||- ||.+..+.+|..+|-.||.|.+.++..|+.|+.|+-|+||.|.+...|+.||..+||..| .-+.
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI--GMKR 356 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI--GMKR 356 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh--hhhh
Confidence 4467889999999 999999999999999999999999999999999999999999999999999999999999 4788
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|..-.++.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 8888776643
No 75
>KOG0120|consensus
Probab=99.14 E-value=1.4e-10 Score=104.43 Aligned_cols=123 Identities=25% Similarity=0.385 Sum_probs=108.2
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.+++||+ ||...++.++.+++..||++....++.+..+|.++||||.+|.+......|+..|||..+ .++.|.|..|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lvvq~A 366 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLVVQRA 366 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh--cCceeEeehh
Confidence 4789999 999999999999999999999999999999999999999999999999999999999999 4799999887
Q ss_pred ccccc------C--c----------------------------------------------------Ccc----------
Q psy882 101 AKLEF------K--E----------------------------------------------------GYR---------- 110 (253)
Q Consensus 101 ~~~~~------~--~----------------------------------------------------~~v---------- 110 (253)
..... . + |.|
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 76110 0 0 000
Q ss_pred ------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 111 ------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 111 ------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+-|-.||+|.+.++|++|.+.|+|..+ .++++...|
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF-~nRtVvtsY 488 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKF-ANRTVVASY 488 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCcee-CCcEEEEEe
Confidence 044599999999999999999999999 999999998
No 76
>KOG1190|consensus
Probab=99.07 E-value=1.9e-09 Score=93.16 Aligned_cols=122 Identities=23% Similarity=0.259 Sum_probs=103.9
Q ss_pred CcEEEEE-c-CCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 22 HSRLFIL-C-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 22 ~~~lfv~-L-p~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
++.|.|. | +..+|.+.|..+|+.||.|..|+|+..+ +.-|+|.|.+...|+.|++.|+|..+ .|+.|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhccee--cCceEEEee
Confidence 5778888 6 7889999999999999999999999886 57899999999999999999999999 599999999
Q ss_pred ccc------------------------cccCc--------Ccc-------------------------------------
Q psy882 100 AAK------------------------LEFKE--------GYR------------------------------------- 110 (253)
Q Consensus 100 a~~------------------------~~~~~--------~~v------------------------------------- 110 (253)
++. ..|++ +|.
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~ 449 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ 449 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC
Confidence 887 12211 111
Q ss_pred -cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 -GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 -~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+.++++++.+.++|..|+-.|+...+..+..|+|+|+++
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 0668999999999999999999999984557999999654
No 77
>KOG0109|consensus
Probab=98.95 E-value=6.3e-10 Score=92.29 Aligned_cols=108 Identities=16% Similarity=0.067 Sum_probs=87.9
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhh
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLL 190 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~ 190 (253)
|+||||+-++...|..|+.+|||..| .|-.|.|+=+++++.+. ..++|.|+. .++..++.
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtL-hg~nInVeaSksKsk~s------------------tkl~vgNis~tctn~ElR 96 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTL-HGVNINVEASKSKSKAS------------------TKLHVGNISPTCTNQELR 96 (346)
T ss_pred cccceEEeecccccHHHHhhccccee-cceEEEEEeccccCCCc------------------cccccCCCCccccCHHHh
Confidence 79999999999999999999999999 99999999977642222 347888988 66666556
Q ss_pred h-hcCCCCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 191 R-SAGLSTDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 191 ~-~~~~~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
. |..+.+-.+-.-.++|+||.+ ... ..||..|||++|.|++|+|..+.
T Consensus 97 a~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 97 AKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred hhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 6 888866444344568887777 433 99999999999999999999987
No 78
>KOG0153|consensus
Probab=98.88 E-value=5.6e-09 Score=88.65 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=71.1
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
++.++...++|||+ |-..++|.+|+++|.+||+|.+++++.. +++|||+|.+.+.|+.|.+.+-...+- .|.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI-~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVI-NGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeee-cce
Confidence 45555667999999 9889999999999999999999999877 679999999999999999986664433 899
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|+|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999987
No 79
>KOG4211|consensus
Probab=98.87 E-value=2.7e-08 Score=88.11 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=87.2
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
.-.|=++ |||++|+++|.++|+.++ |.++.+.+. +|+..|=|||+|.+.+++++|++ .+...+ ..+-|.|-.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~RYIEVf~~ 83 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHRYIEVFTA 83 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHh--CCceEEEEcc
Confidence 3445557 999999999999999985 777666665 89999999999999999999997 477777 4788888777
Q ss_pred cccccCc-------------Cccc-------------------------------------CcEEEEEcCCHHHHHHHHH
Q psy882 101 AKLEFKE-------------GYRG-------------------------------------GQKISVQYTSPQSAAYARD 130 (253)
Q Consensus 101 ~~~~~~~-------------~~v~-------------------------------------~g~~fv~f~~~~~A~~A~~ 130 (253)
...+... +.|. -|=|||+|.+.++|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 5521111 1111 3449999999999999995
Q ss_pred hhCCCcCCCCCcEEEEe
Q psy882 131 KFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 131 ~l~g~~~~~g~~l~v~~ 147 (253)
.. ...| +-+-|.|-.
T Consensus 164 rh-re~i-GhRYIEvF~ 178 (510)
T KOG4211|consen 164 RH-RENI-GHRYIEVFR 178 (510)
T ss_pred HH-HHhh-ccceEEeeh
Confidence 43 3333 445555543
No 80
>KOG1456|consensus
Probab=98.85 E-value=7.4e-07 Score=76.65 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=143.1
Q ss_pred CCCCCCCcEEEEE-cC--CCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 16 YNDEPPHSRLFIL-CG--KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp--~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
++...++..|.+. |. ..+|-+-|+.+....|+|..|.|++. + .-.|+|+|.+.+.|++|...|||..|+..=
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccc
Confidence 3344566777778 74 45788899999999999999988876 2 347999999999999999999999998433
Q ss_pred CcEEEEEccccccCc-----------------------------------------------Cccc--------------
Q psy882 93 KPIKVLIAAKLEFKE-----------------------------------------------GYRG-------------- 111 (253)
Q Consensus 93 ~~i~v~~a~~~~~~~-----------------------------------------------~~v~-------------- 111 (253)
..|+|+||++..... +|-+
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 689999999911100 0000
Q ss_pred --------------------------------------------------------CcEEEEEcCCHHHHHHHHHhhCCC
Q psy882 112 --------------------------------------------------------GQKISVQYTSPQSAAYARDKFHGF 135 (253)
Q Consensus 112 --------------------------------------------------------~g~~fv~f~~~~~A~~A~~~l~g~ 135 (253)
.|-|.|+..|....++|+..||+.
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC
Confidence 678999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCC--------------------CCCCCCCCCCC-Ccccccccccccccccchh-hHHHHHhhh-h
Q psy882 136 AYPPGIPMVVVPDFSYG--------------------LPRNGASALGG-NAALSVVDSKGALQSLTKA-LAQATSLLR-S 192 (253)
Q Consensus 136 ~~~~g~~l~v~~~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~ 192 (253)
.+ .|.+|.|.+++-.. ...++|-.... ...-........+..+|-| ..+++.|+. +
T Consensus 349 ~l-fG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 349 PL-FGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred cc-ccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 99 99999998844321 11111111100 0001111222556677777 555555555 2
Q ss_pred cCC---CC-----Chhhhccccch--hhhh-HHHHHHHHHhcCceecCe------EEEEEecC
Q psy882 193 AGL---ST-----DSRFISRLRLD--DFIY-YILVEFSQTLHGAEMYGS------RLKVMEAD 238 (253)
Q Consensus 193 ~~~---~~-----~~~~~~~~~fg--~v~~-~~~~~Ai~~lnG~~i~G~------~l~v~~a~ 238 (253)
... ++ ... .++..-| .+.. .....|+..+|...|.|. .|++-|+.
T Consensus 428 nek~v~~~svkvFp~k-serSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLK-SERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred hhcCCCcceEEeeccc-ccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 221 11 111 2333334 2333 333889999999999874 67777776
No 81
>KOG1457|consensus
Probab=98.84 E-value=4.4e-08 Score=78.63 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC-CCCcEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCV-KDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN-HSKPIKV 97 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~-~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~-~g~~i~v 97 (253)
.-++|||. ||.++...+|+.+|..|--...+.+. .++.....+.+||++|.+...|..|+..|||..|.- ++..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 36999999 99999999999999987655555443 333222345899999999999999999999998853 6789999
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
+.++.
T Consensus 113 ElAKS 117 (284)
T KOG1457|consen 113 ELAKS 117 (284)
T ss_pred eehhc
Confidence 98877
No 82
>KOG0120|consensus
Probab=98.80 E-value=3.8e-08 Score=88.84 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=93.4
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCC-----------C-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPF-----------G-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~-----------G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l 83 (253)
+-......+||+ +|+.++++....+|..- | ++..+.+-.. +.++|++|.+.++|..|+. +
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~-~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA-L 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-c
Confidence 334457889999 99999999998888753 2 2555555444 7899999999999999975 6
Q ss_pred CCcccCCCCCcEEEEEcccc--------cc------Cc--------------------C---------------------
Q psy882 84 NGEFLPNHSKPIKVLIAAKL--------EF------KE--------------------G--------------------- 108 (253)
Q Consensus 84 ~~~~~~~~g~~i~v~~a~~~--------~~------~~--------------------~--------------------- 108 (253)
++..+ .|.++++...... .. .. +
T Consensus 243 ~~~~f--~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~ 320 (500)
T KOG0120|consen 243 DGIIF--EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR 320 (500)
T ss_pred cchhh--CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhe
Confidence 77776 6777776544330 00 00 0
Q ss_pred -------cccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 109 -------YRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 109 -------~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
+.++||+|.+|-+......|++.|||..+ ++..|.|..+-
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l-gd~~lvvq~A~ 367 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL-GDKKLVVQRAI 367 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhh-cCceeEeehhh
Confidence 11289999999999999999999999999 99999998843
No 83
>KOG4661|consensus
Probab=98.73 E-value=4e-08 Score=88.39 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=77.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..-++.|||. |...+--.+|+.+|++||.|...+|+.+-.+.-.+-|+||++.+.++|.+||+.|+.+.+ .|+.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 3457899999 999999999999999999999999999876777788999999999999999999999999 7999999
Q ss_pred EEcccccc
Q psy882 98 LIAAKLEF 105 (253)
Q Consensus 98 ~~a~~~~~ 105 (253)
..+..+.-
T Consensus 480 EkaKNEp~ 487 (940)
T KOG4661|consen 480 EKAKNEPG 487 (940)
T ss_pred eecccCcc
Confidence 99988544
No 84
>KOG4212|consensus
Probab=98.72 E-value=2.9e-08 Score=86.72 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
-..+..|+|||+ ||.++|.+.|++-|..||.|.+..|+. .|+++| .|.|.++++|+.|+..++|..+ .|+.|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l--~Gr~I 603 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRL--DGRNI 603 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcc--cCcee
Confidence 346778999999 999999999999999999999988843 467777 8999999999999999999999 79999
Q ss_pred EEEEc
Q psy882 96 KVLIA 100 (253)
Q Consensus 96 ~v~~a 100 (253)
+|.|.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99874
No 85
>KOG4205|consensus
Probab=98.71 E-value=2.8e-08 Score=85.37 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=74.4
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
...++||+ ||.++++++|++.|++||.|..+.++.|..+..++||+||.|..++.+++++. ...+.+ +++.+.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~--~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF--NGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee--cCceeeEee
Confidence 45699999 99999999999999999999999999999999999999999999999999975 356666 799999999
Q ss_pred cccccc
Q psy882 100 AAKLEF 105 (253)
Q Consensus 100 a~~~~~ 105 (253)
|.++..
T Consensus 173 A~pk~~ 178 (311)
T KOG4205|consen 173 AIPKEV 178 (311)
T ss_pred ccchhh
Confidence 999544
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=4.7e-07 Score=64.57 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=69.2
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcC--CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC--CCCcEEE
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSP--FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN--HSKPIKV 97 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~--~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~--~g~~i~v 97 (253)
++|.|+ ||...|.++|.+++.. .|..-.+-++.|..++.+.|||||.|.+.+.|....+.++|..+.. ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999 9999999999988864 5667778889998899999999999999999999999999988752 4677888
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 87
>KOG0226|consensus
Probab=98.57 E-value=4.3e-08 Score=80.07 Aligned_cols=79 Identities=32% Similarity=0.636 Sum_probs=72.8
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
..-+||.+ |-.+++++-|-..|.+|-.....++++|+.||+++||+||.|.+..++..|+..++|.-+ ..++|++..
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhhh
Confidence 45779999 999999999999999999999999999999999999999999999999999999999999 478888765
Q ss_pred cc
Q psy882 100 AA 101 (253)
Q Consensus 100 a~ 101 (253)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 54
No 88
>KOG0533|consensus
Probab=98.55 E-value=3.6e-07 Score=75.69 Aligned_cols=84 Identities=27% Similarity=0.479 Sum_probs=73.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
+....+|+|. ||..+++++|+++|..||.+..+.+-.++ +|.+.|.|-|.|...++|..|++.|++..+ +|+++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc--CCceeee
Confidence 3344789999 99999999999999999988887777775 899999999999999999999999999666 7999999
Q ss_pred EEcccccc
Q psy882 98 LIAAKLEF 105 (253)
Q Consensus 98 ~~a~~~~~ 105 (253)
....+...
T Consensus 157 ~~i~~~~~ 164 (243)
T KOG0533|consen 157 EIISSPSQ 164 (243)
T ss_pred EEecCccc
Confidence 88776443
No 89
>KOG4660|consensus
Probab=98.53 E-value=1.1e-07 Score=85.45 Aligned_cols=71 Identities=25% Similarity=0.506 Sum_probs=63.5
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
.-+..+|+|- ||..+++++|.++|+.||+|+.|+.- ...+|.+||+|.+.-+|+.|++.|++..+ .|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREI--AGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHh--hhhhhc
Confidence 4467899999 99999999999999999999997543 34589999999999999999999999999 588777
No 90
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.49 E-value=2.8e-07 Score=71.15 Aligned_cols=76 Identities=14% Similarity=-0.008 Sum_probs=58.8
Q ss_pred ccccccccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEE
Q psy882 166 ALSVVDSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRL 232 (253)
Q Consensus 166 ~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l 232 (253)
..........++|.||+ +.++..|.. |..+. .|..++..++||||.+ ... ++|++.|||.+|+|++|
T Consensus 27 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33333344679999999 777777777 77773 3666677889998888 333 99999999999999999
Q ss_pred EEEecCCCCC
Q psy882 233 KVMEADPPKG 242 (253)
Q Consensus 233 ~v~~a~~p~~ 242 (253)
+|+++. ++.
T Consensus 107 ~V~~a~-~~~ 115 (144)
T PLN03134 107 RVNPAN-DRP 115 (144)
T ss_pred EEEeCC-cCC
Confidence 999998 443
No 91
>KOG0111|consensus
Probab=98.39 E-value=2.5e-07 Score=74.16 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=60.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|..|. ++.+..|-. |.|| |.|-+..+..+||||.+ ... .+||..||+.++.||+|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34678999999 777777766 8888 55777778889998877 322 99999999999999999999999
Q ss_pred CCCCcc
Q psy882 239 PPKGDR 244 (253)
Q Consensus 239 ~p~~~~ 244 (253)
|+|..+
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 877653
No 92
>KOG0151|consensus
Probab=98.39 E-value=6.3e-07 Score=82.66 Aligned_cols=82 Identities=18% Similarity=0.397 Sum_probs=72.7
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecC---CCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDR---NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~---~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.|..+.|||+ |++.++++.|-..|+.||+|..++|+.-+ .....+-++||.|.+..+|+.|+..|+|..+ .+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 6678999999 99999999999999999999999888654 1234457999999999999999999999999 6999
Q ss_pred EEEEEccc
Q psy882 95 IKVLIAAK 102 (253)
Q Consensus 95 i~v~~a~~ 102 (253)
+++.|..+
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999865
No 93
>KOG4209|consensus
Probab=98.38 E-value=7.6e-07 Score=73.82 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
....+...+||+ +.+.++-+++...|+.||.+..+.++.|+.+|.++||+||+|.+.+.+..++. |++..+ .++.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i 172 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAI 172 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccc
Confidence 456678999999 99999999999999999999999999999999999999999999999999998 999999 69999
Q ss_pred EEEEccc
Q psy882 96 KVLIAAK 102 (253)
Q Consensus 96 ~v~~a~~ 102 (253)
.|.+...
T Consensus 173 ~vt~~r~ 179 (231)
T KOG4209|consen 173 EVTLKRT 179 (231)
T ss_pred eeeeeee
Confidence 9988764
No 94
>KOG4454|consensus
Probab=98.36 E-value=2.2e-07 Score=74.48 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=91.5
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
..++|||+ +-..++|+-|.++|-+.|+|..+.|..++ .++.+ ||||.|.++-....|++.+||..+ .+.++.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDL--EEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchh--ccchhhccc
Confidence 45889999 99999999999999999999999988886 45556 999999999999999999999998 478877766
Q ss_pred ccccccCc------------Ccc-----------------cCcEEEEEcCCHHHHHHHHHhhCCCcC
Q psy882 100 AAKLEFKE------------GYR-----------------GGQKISVQYTSPQSAAYARDKFHGFAY 137 (253)
Q Consensus 100 a~~~~~~~------------~~v-----------------~~g~~fv~f~~~~~A~~A~~~l~g~~~ 137 (253)
-....-.. ++. ++.++|+.+-.......|+....+.++
T Consensus 84 r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 84 RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 44421111 000 167899998888888888888888776
No 95
>KOG0116|consensus
Probab=98.31 E-value=1.6e-06 Score=77.47 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
....|||+ ||.++++.+|+++|.+||.|....|......++...||||+|.+.++++.||++ +-..+ .++.+.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i--g~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI--GGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc--CCeeEEEEe
Confidence 34669999 999999999999999999999887766532344458999999999999999986 43444 688898876
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
-.+
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 553
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.26 E-value=1.5e-06 Score=55.66 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=34.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
+++|||+|.+.++|..|+..|||..+ .|++|+|.|+
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~-~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQF-NGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEE-TTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEEEC
Confidence 48999999999999999999999999 9999999984
No 97
>smart00361 RRM_1 RNA recognition motif.
Probab=98.03 E-value=6.3e-06 Score=55.41 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=32.0
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEE
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVV 145 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v 145 (253)
.+|||||+|.+.++|.+|+..|||..+ .|+.|++
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~~~-~gr~l~~ 69 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGRYF-DGRTVKA 69 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEe
Confidence 479999999999999999999999999 9999876
No 98
>KOG4206|consensus
Probab=97.99 E-value=2.9e-05 Score=62.81 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...+++..||+. ||.+++.+.|..+|.+|+-...++++... .+.|||+|.+...|..|.+.|++..+- +.+.+
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it-~~~~m 214 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKIT-KKNTM 214 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceec-cCceE
Confidence 346788999999 99999999999999999999999998876 789999999999999999999999885 57888
Q ss_pred EEEEcc
Q psy882 96 KVLIAA 101 (253)
Q Consensus 96 ~v~~a~ 101 (253)
.|.++.
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 887764
No 99
>KOG4211|consensus
Probab=97.96 E-value=2.5e-05 Score=69.62 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=69.7
Q ss_pred cCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 8 NTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE-IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 8 ~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~-i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
.|...+..++.......|=++ ||++||+++|.++|+..-.+.. |.++.++ .+++.|=|||+|.+.+.|+.|+.. +.
T Consensus 89 d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 89 DWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred cccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HH
Confidence 344444444444556678788 9999999999999998655544 5566665 677889999999999999999874 66
Q ss_pred cccCCCCCcEEEEEccccc
Q psy882 86 EFLPNHSKPIKVLIAAKLE 104 (253)
Q Consensus 86 ~~~~~~g~~i~v~~a~~~~ 104 (253)
..| ..+-|.|-.+...+
T Consensus 167 e~i--GhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 167 ENI--GHRYIEVFRSSRAE 183 (510)
T ss_pred Hhh--ccceEEeehhHHHH
Confidence 667 47788887776633
No 100
>KOG0106|consensus
Probab=97.86 E-value=3.2e-05 Score=62.94 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=78.3
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCC----cccccc---cccccccccchh-
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGN----AALSVV---DSKGALQSLTKA- 182 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~v~n~~- 182 (253)
..||+||+|.+..+|..|+..+|+..+ .|..+.+.|+... ...+..+.+. +..... -+...+.+-|+.
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l-~~e~~vve~~r~~---~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~ 109 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKEL-CGERLVVEHARGK---RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSL 109 (216)
T ss_pred ecccceeccCchhhhhcccchhcCcee-cceeeeeeccccc---ccccCCCCCCCccchhhccCCcccccceeeeccchh
Confidence 388999999999999999999999999 8866999996532 0000111111 111111 122455666666
Q ss_pred hHHHHHhhh-hcCCCCChhhhccccchhhhh-HH--HHHHHHHhcCceecCeEEEEEecC
Q psy882 183 LAQATSLLR-SAGLSTDSRFISRLRLDDFIY-YI--LVEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 183 ~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~--~~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
......|-. |.+++.-.......+|++|.| .. ..+|++.|+|..+.|+.|.+.+.-
T Consensus 110 r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 110 RVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 332232222 444432222222558886766 22 399999999999999999995554
No 101
>KOG4207|consensus
Probab=97.80 E-value=8.7e-06 Score=64.92 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=55.7
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh---HHHHHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY---YILVEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~---~~~~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......+.|.||. -+..+.|.. |..| |-|..+.+..||+||-| ..++.|+++|+|..++|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3445678899999 556666666 7666 55888888999999988 333999999999999999999999
Q ss_pred cC
Q psy882 237 AD 238 (253)
Q Consensus 237 a~ 238 (253)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 87
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.74 E-value=0.00015 Score=52.71 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=43.6
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc---ccCCCCCcEEE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE---FLPNHSKPIKV 97 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~---~~~~~g~~i~v 97 (253)
++.|++. ++..++.++|++.|++||.|..|.+.+. ..-|||.|.+.+.|+.|++.+... .+-..+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678898 9999999999999999999999876655 347999999999999999977544 22225666655
Q ss_pred EE
Q psy882 98 LI 99 (253)
Q Consensus 98 ~~ 99 (253)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 103
>KOG0122|consensus
Probab=97.73 E-value=3.9e-05 Score=62.73 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=36.0
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
||||||.|.++++|.+|+..|||.-+ +.--|+|+|+++
T Consensus 231 kGFAFVtF~sRddA~rAI~~LnG~gy-d~LILrvEwskP 268 (270)
T KOG0122|consen 231 KGFAFVTFESRDDAARAIADLNGYGY-DNLILRVEWSKP 268 (270)
T ss_pred cceEEEEEecHHHHHHHHHHccCccc-ceEEEEEEecCC
Confidence 99999999999999999999999998 889999999764
No 104
>KOG1457|consensus
Probab=97.71 E-value=3.6e-05 Score=62.16 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=54.7
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
+...+|||. |..+|+|++|+.+|+.|....-++|-.. ..-..||++|...+.|..|+..|+|..+.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 346789999 9999999999999999987766655332 12348999999999999999999998874
No 105
>KOG1995|consensus
Probab=97.69 E-value=4.9e-05 Score=65.38 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQ--------EIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~--------~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
.+.....+|||- ||..+++.+|.++|.++|.|. .|.+-+++.|+..+|=|.|.|.+...|+.|+.-+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 345667889999 999999999999999999883 37788999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEccc
Q psy882 88 LPNHSKPIKVLIAAK 102 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~ 102 (253)
+ ++..|+|..+..
T Consensus 141 f--~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 141 F--CGNTIKVSLAER 153 (351)
T ss_pred c--cCCCchhhhhhh
Confidence 9 789999988764
No 106
>KOG0112|consensus
Probab=97.66 E-value=2.1e-05 Score=74.61 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=100.8
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+...+.+||++ |+..+++.+|+..|..+|.|.+|.|-+-+ -+...-|+||.|.+...+-.|+..+.+..|.. -.++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~--g~~r 444 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGN--GTHR 444 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCcccc--Cccc
Confidence 45568999999 99999999999999999999988776553 33444699999999999999999998888752 2333
Q ss_pred EEEccc-----------------------cccCc-Cccc-------CcEEEEEcCCHHHHHHHHHhhCCCcCCCC--CcE
Q psy882 97 VLIAAK-----------------------LEFKE-GYRG-------GQKISVQYTSPQSAAYARDKFHGFAYPPG--IPM 143 (253)
Q Consensus 97 v~~a~~-----------------------~~~~~-~~v~-------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g--~~l 143 (253)
+.+..+ ..|.. |.+. --|++|+|.+...|++|...|-|..+ +| ++|
T Consensus 445 ~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~-G~P~~r~ 523 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPL-GGPPRRL 523 (975)
T ss_pred ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcC-CCCCccc
Confidence 333321 11111 2222 45899999999999999999999999 66 789
Q ss_pred EEEecCCCC
Q psy882 144 VVVPDFSYG 152 (253)
Q Consensus 144 ~v~~~~~~~ 152 (253)
+|.++...+
T Consensus 524 rvdla~~~~ 532 (975)
T KOG0112|consen 524 RVDLASPPG 532 (975)
T ss_pred ccccccCCC
Confidence 999966553
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.61 E-value=0.00042 Score=47.58 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=45.9
Q ss_pred cEEEEE-cCCCCCHHHH----HHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 23 SRLFIL-CGKDVTEDDL----RQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l----~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+.|||. ||.+.+-..+ +++...+| .|.+|. .+.|+|.|.+.+.|..|...|.|..++ |+.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVf--G~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVF--GNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SS--SS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccc--cceEE
Confidence 569999 9999998665 46666665 555541 578999999999999999999999985 99999
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
|.+..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 99874
No 108
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.61 E-value=4.9e-05 Score=50.36 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.5
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEE
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMV 144 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~ 144 (253)
.+++|||+|.+.++|.+|+..|+|..+ .|+.|+
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~-~~~~ir 70 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNGKKI-NGRKIR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEE
T ss_pred ccceEEEEEcCHHHHHHHHHHcCCCEE-CccCcC
Confidence 378999999999999999999999999 998875
No 109
>KOG0130|consensus
Probab=97.60 E-value=6.9e-05 Score=55.91 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=37.5
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGL 153 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~ 153 (253)
+||++|+|.+.++|+.|+..|||..| .|.+|.|.|....+.
T Consensus 114 KGYaLvEYet~keAq~A~~~~Ng~~l-l~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 114 KGYALVEYETLKEAQAAIDALNGAEL-LGQNVSVDWCFVKGP 154 (170)
T ss_pred cceeeeehHhHHHHHHHHHhccchhh-hCCceeEEEEEecCC
Confidence 89999999999999999999999999 999999999655433
No 110
>KOG4210|consensus
Probab=97.56 E-value=8.8e-05 Score=63.59 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCcEEE-EE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 21 PHSRLF-IL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 21 ~~~~lf-v~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+..++| |+ |+.++++++|+..|..+|.|..+++..++.++..+|+++|.|.....+..++.. +...+ .++++.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCcccccc
Confidence 344455 89 999999999999999999999999999999999999999999999999999876 66777 58899999
Q ss_pred EccccccC
Q psy882 99 IAAKLEFK 106 (253)
Q Consensus 99 ~a~~~~~~ 106 (253)
+..+....
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 88775443
No 111
>KOG0107|consensus
Probab=97.55 E-value=7.2e-05 Score=58.27 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=35.3
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.|||||+|.++.+|+.|+..|+|..| .|..|+|+++.
T Consensus 47 PGfAFVEFed~RDA~DAvr~LDG~~~-cG~r~rVE~S~ 83 (195)
T KOG0107|consen 47 PGFAFVEFEDPRDAEDAVRYLDGKDI-CGSRIRVELST 83 (195)
T ss_pred CCceEEeccCcccHHHHHhhcCCccc-cCceEEEEeec
Confidence 79999999999999999999999999 99999999954
No 112
>PLN03213 repressor of silencing 3; Provisional
Probab=97.54 E-value=4.8e-05 Score=68.00 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC------Chhhhccccchhhhh-HH----HHHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST------DSRFISRLRLDDFIY-YI----LVEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~------~~~~~~~~~fg~v~~-~~----~~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
.+.+||.||+ .+.+..|.. |+.|+. -.+++ .|||||.+ .. ..+||..|||.+++|++|+|..|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 4789999999 777777777 988844 12222 69998877 43 3999999999999999999999994
No 113
>KOG0125|consensus
Probab=97.52 E-value=7.5e-05 Score=63.54 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--Chh--h--hccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--DSR--F--ISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPK 241 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~--~--~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~ 241 (253)
-..+.|.|+| .--+..|.. |..|+. |.+ + ...+|||||.+ ... ++|-++|||..|.||+|+|.-|. ++
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT-ar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT-AR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc-hh
Confidence 3678999999 444444555 655533 211 1 24569999988 554 99999999999999999999999 66
Q ss_pred Cc
Q psy882 242 GD 243 (253)
Q Consensus 242 ~~ 243 (253)
-.
T Consensus 175 V~ 176 (376)
T KOG0125|consen 175 VH 176 (376)
T ss_pred hc
Confidence 55
No 114
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.51 E-value=0.00027 Score=60.44 Aligned_cols=79 Identities=22% Similarity=0.481 Sum_probs=61.6
Q ss_pred CcEEEEE-cCCCCCHHH----H--HHhhcCCCceEEEEEeecCCCC-CcccEE--EEEecCHHHHHHHHHHhCCcccCCC
Q psy882 22 HSRLFIL-CGKDVTEDD----L--RQGFSPFGNIQEIRCVKDRNTG-ESKGVA--YIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~----l--~~~f~~~G~v~~i~i~~~~~tg-~~~g~~--fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
..-+||- ||+.+..++ | .++|++||.|..|.|-+...+- ...+.+ ||+|...++|..||...+|..+ +
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 4568997 877766665 2 4899999999998766553122 223444 9999999999999999999999 7
Q ss_pred CCcEEEEEccc
Q psy882 92 SKPIKVLIAAK 102 (253)
Q Consensus 92 g~~i~v~~a~~ 102 (253)
|+-|+..|-..
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988766
No 115
>KOG0108|consensus
Probab=97.44 E-value=9.4e-05 Score=66.65 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=53.4
Q ss_pred ccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
..++|.|++ +..++.|.. |... ..|.+++..+||||+.+ ... ..|++.|||.+++||+|+|.|+.-
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 678999999 655555555 5544 33889999999997777 433 999999999999999999999884
No 116
>KOG2193|consensus
Probab=97.39 E-value=4.1e-05 Score=67.15 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=89.6
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
+++|++ |.+.++..+|+.+|...-.-.+-.++.. .||+||.+.+...|.+|++.++|..-. .|+.+.|..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~el-qGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVEL-QGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhh-cCceeeccchh
Confidence 579999 9999999999999986411111112222 589999999999999999999998755 79999999988
Q ss_pred ccccCc------------------------Cccc----------CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 102 KLEFKE------------------------GYRG----------GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 102 ~~~~~~------------------------~~v~----------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
++.... |.+. -..--|.|...+.+.+|+.+++|..+ ....+++.|
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~-en~~~k~~Y 153 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQL-ENQHLKVGY 153 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHh-hhhhhhccc
Confidence 743322 1111 11234578899999999999999999 889999999
No 117
>KOG1365|consensus
Probab=97.38 E-value=0.0027 Score=55.38 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=106.3
Q ss_pred EE-cCCCCCHHHHHHhhcCC----CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 27 IL-CGKDVTEDDLRQGFSPF----GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 27 v~-Lp~~~te~~l~~~f~~~----G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
++ ||+++++.++.++|.+- |....|-++..+ .|+..|-|||.|..+++|+.|+.+ +...++ -|-|.+-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG--qRYIElFR-- 239 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIG--QRYIELFR-- 239 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHh--HHHHHHHH--
Confidence 36 99999999999999742 234556666665 688899999999999999999975 444552 22222222
Q ss_pred ccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccch
Q psy882 102 KLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTK 181 (253)
Q Consensus 102 ~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~ 181 (253)
.+..+.++++.......+..+.. ++..++.. .... +......|+-+.+|
T Consensus 240 ------------------STaaEvqqvlnr~~s~pLi~~~~-------sp~~p~~p-----~~~~-p~~~~kdcvRLRGL 288 (508)
T KOG1365|consen 240 ------------------STAAEVQQVLNREVSEPLIPGLT-------SPLLPGGP-----ARLV-PPTRSKDCVRLRGL 288 (508)
T ss_pred ------------------HhHHHHHHHHHhhccccccCCCC-------CCCCCCCc-----cccC-CCCCCCCeeEecCC
Confidence 24777888887766544422221 00111000 0000 11112468889999
Q ss_pred h-hHHHHHhhh-hcCCCCChhh----------hccccchhhhhHHH---HHHHHHhcCceecCeEEEEEecC
Q psy882 182 A-LAQATSLLR-SAGLSTDSRF----------ISRLRLDDFIYYIL---VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 182 ~-~~~~~~l~~-~~~~~~~~~~----------~~~~~fg~v~~~~~---~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
| ...-+.+.. +..|.++..+ +.+.|=+||.+.+. ..|.+..+...+.+|=|+|--|.
T Consensus 289 Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 289 PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9 655555555 4555332222 45558887777444 55566666666778888876554
No 118
>KOG0129|consensus
Probab=97.37 E-value=0.0009 Score=60.32 Aligned_cols=61 Identities=18% Similarity=0.392 Sum_probs=46.8
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCC---CCccc---EEEEEecCHHHHHHHHHH
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT---GESKG---VAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~t---g~~~g---~~fV~f~~~~~A~~ai~~ 82 (253)
=+++|||| ||++++|+.|...|..||++ .+.+...... -..+| |+|+.|+.+..+..-+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 47999999 99999999999999999987 3344422111 12456 999999999988776654
No 119
>KOG2314|consensus
Probab=97.36 E-value=0.00034 Score=63.59 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=64.5
Q ss_pred CCcEEEEE-cCCCCCH------HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 21 PHSRLFIL-CGKDVTE------DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te------~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
-.+.|+|. +|---.. .-|.++|+++|++....++.+..+| ++||.|++|.+..+|+.|++.|||..+. ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld-knH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD-KNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec-ccc
Confidence 34678887 7743322 3356899999999999998887555 8999999999999999999999999997 678
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
...|..-..
T Consensus 135 tf~v~~f~d 143 (698)
T KOG2314|consen 135 TFFVRLFKD 143 (698)
T ss_pred eEEeehhhh
Confidence 888865443
No 120
>KOG0128|consensus
Probab=97.33 E-value=1.8e-05 Score=74.69 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=94.4
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
...+++||+ |+..+.+.+|...|..+|.+..+++....+.+.-+|+||++|...+.+.+|+....++.++ ...+.+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--K~~v~i~ 742 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--KISVAIS 742 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh--hhhhhee
Confidence 456889999 9999999999999999999988887766678899999999999999999999876666652 2222222
Q ss_pred Eccc---cccCc------Ccc------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 99 IAAK---LEFKE------GYR------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 99 ~a~~---~~~~~------~~v------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
-... +.+.. |.+ .+|.++|.|.+..+|.+++..++...+ ..+.+.+.-
T Consensus 743 g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~-rE~~~~v~v 811 (881)
T KOG0128|consen 743 GPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK-RENNGEVQV 811 (881)
T ss_pred CCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh-hhcCccccc
Confidence 2111 01111 221 178899999999999999998888777 666655555
No 121
>smart00360 RRM RNA recognition motif.
Probab=97.28 E-value=0.00043 Score=45.09 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=32.1
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEE
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVV 146 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 146 (253)
..+++|||+|.+.++|..|+..|++..+ .|+.|+|.
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~~~~~-~~~~~~v~ 71 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALNGKEL-DGRPLKVK 71 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcCCCee-CCcEEEeC
Confidence 3478999999999999999999999998 89888763
No 122
>KOG0121|consensus
Probab=97.28 E-value=0.0003 Score=52.10 Aligned_cols=36 Identities=22% Similarity=0.099 Sum_probs=34.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
-||+||+|.+.++|..|++.++|..+ ..++|++.|+
T Consensus 78 CGFCFVeyy~~~dA~~AlryisgtrL-ddr~ir~D~D 113 (153)
T KOG0121|consen 78 CGFCFVEYYSRDDAEDALRYISGTRL-DDRPIRIDWD 113 (153)
T ss_pred cceEEEEEecchhHHHHHHHhccCcc-cccceeeecc
Confidence 68999999999999999999999999 9999999994
No 123
>KOG4849|consensus
Probab=97.17 E-value=0.00033 Score=60.15 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCC--ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFG--NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G--~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...-.+||+ |-|.+|+++|.+.+..-| .+.++++..++.+|+++|||+|...+....++.++.|....+ .|..-.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i--HGQ~P~ 155 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI--HGQSPT 155 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee--cCCCCe
Confidence 344568999 999999999999998766 356778888999999999999999999999999999999888 576666
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
|....
T Consensus 156 V~~~N 160 (498)
T KOG4849|consen 156 VLSYN 160 (498)
T ss_pred eeccc
Confidence 64433
No 124
>KOG1548|consensus
Probab=97.15 E-value=0.0014 Score=56.31 Aligned_cols=88 Identities=14% Similarity=0.316 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCCcEEEEE-c--C--CCCC-------HHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHH
Q psy882 9 THDRSREYNDEPPHSRLFIL-C--G--KDVT-------EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76 (253)
Q Consensus 9 ~~~~~~~~~~~~~~~~lfv~-L--p--~~~t-------e~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A 76 (253)
|.+....++.....++|.+. + | ...+ .++|.+-.++||.|..|.|.-. .+.|.+-|.|.+.++|
T Consensus 252 w~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA 327 (382)
T KOG1548|consen 252 WRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEA 327 (382)
T ss_pred cCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHH
Confidence 44444344445566777776 4 2 2233 2556677889999999876533 4489999999999999
Q ss_pred HHHHHHhCCcccCCCCCcEEEEEccc
Q psy882 77 AKAVEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 77 ~~ai~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
..||+.|+|..+ .|+.|.......
T Consensus 328 ~~ciq~m~GR~f--dgRql~A~i~DG 351 (382)
T KOG1548|consen 328 DQCIQTMDGRWF--DGRQLTASIWDG 351 (382)
T ss_pred HHHHHHhcCeee--cceEEEEEEeCC
Confidence 999999999999 799999887764
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.09 E-value=0.0041 Score=42.71 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=41.7
Q ss_pred EEEEEcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 24 RLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 24 ~lfv~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
..||+.|..|...||.++|+.||.| .|.++.|. -|||...+.+.|..++..+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3455599999999999999999997 56666663 699999999999999988753
No 126
>smart00362 RRM_2 RNA recognition motif.
Probab=97.07 E-value=0.00076 Score=44.05 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.0
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEE
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVV 146 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 146 (253)
..+++|||+|.+.++|.+|+..++|..+ .|++|.|.
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~~~~-~~~~i~v~ 72 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNGTKL-GGRPLRVE 72 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCCcEE-CCEEEeeC
Confidence 3468999999999999999999999988 88888763
No 127
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.03 E-value=0.00057 Score=45.42 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=30.8
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEE
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMV 144 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~ 144 (253)
..+++|||+|.+.++|.+|+..++|..+ .|+.|+
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~~~~~-~g~~l~ 70 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLNGKEI-DGRKLR 70 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEE
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCCCcEE-CCEEcC
Confidence 4578999999999999999999999999 998874
No 128
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.98 E-value=0.0014 Score=43.00 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=33.6
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
..+++|||+|.+.++|..|+..+++..+ .|+++.|.|
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~-~~~~~~v~~ 74 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKEL-GGRPLRVEF 74 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEeC
Confidence 4478999999999999999999999988 999998875
No 129
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.97 E-value=0.0016 Score=54.52 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
+|....|....... .+|||||+|.+.++|..|+ .|+|..| .|+.|.|.++.+.
T Consensus 28 ~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~Al-lLnG~~l-~gr~V~Vt~a~~~ 80 (260)
T PLN03120 28 SGDIEYVEMQSENE------RSQIAYVTFKDPQGAETAL-LLSGATI-VDQSVTITPAEDY 80 (260)
T ss_pred cCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHH-HhcCCee-CCceEEEEeccCC
Confidence 46666666544321 4789999999999999999 5999999 9999999997654
No 130
>KOG0129|consensus
Probab=96.93 E-value=0.003 Score=57.04 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhc-CCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFS-PFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~-~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~ 82 (253)
++.-.+.+||||| ||.-++-++|-.+|+ -||.|..+-|-.|+.-+..+|-|=|+|.+...--+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3345578999999 999999999999999 699999999999988999999999999999999999874
No 131
>KOG0226|consensus
Probab=96.91 E-value=0.00075 Score=55.67 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=74.1
Q ss_pred HHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccc--------------cc
Q psy882 39 RQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK--------------LE 104 (253)
Q Consensus 39 ~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~--------------~~ 104 (253)
...|+.+-.+....++++. -+..++.+|+.|.....-.++-..-++..+ ...+++...... ..
T Consensus 117 ~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~a~gtswedPsl~ew~~~DfRI 193 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRLAAGTSWEDPSLAEWDEDDFRI 193 (290)
T ss_pred hhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceeeccccccCCcccccCcccccee
Confidence 7788888888777888875 466789999999877776666555555555 233354433222 11
Q ss_pred cCcCc---c----------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 105 FKEGY---R----------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 105 ~~~~~---v----------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
|...+ | ++||+||-|.+..++.+|++.|+|..+ +.++|++.-
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV-gsrpiklRk 266 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV-GSRPIKLRK 266 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc-ccchhHhhh
Confidence 11100 0 189999999999999999999999999 888887643
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.88 E-value=0.0082 Score=45.43 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=60.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCH-HHHH---HhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 16 YNDEPPHSRLFIL-CGKDVTE-DDLR---QGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te-~~l~---~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
...+||..+|-|+ |..++.. +||+ ..++.||+|.++...- +--|.|.|.+...|=+|+.+++....
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~p-- 150 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAP-- 150 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCC--
Confidence 4458899999999 9888765 4444 5567899999986543 33699999999999999999887554
Q ss_pred CCCcEEEEEcc
Q psy882 91 HSKPIKVLIAA 101 (253)
Q Consensus 91 ~g~~i~v~~a~ 101 (253)
|..+.+.|..
T Consensus 151 -gtm~qCsWqq 160 (166)
T PF15023_consen 151 -GTMFQCSWQQ 160 (166)
T ss_pred -CceEEeeccc
Confidence 8899998865
No 133
>KOG4208|consensus
Probab=96.86 E-value=0.0011 Score=53.04 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=42.4
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
|...++..+.... --.++|||||+|.+.+.|..|-..||++.+ .|+.|.|.+
T Consensus 75 g~v~r~rlsRnkr---TGNSKgYAFVEFEs~eVA~IaAETMNNYLl-~e~lL~c~v 126 (214)
T KOG4208|consen 75 GTVTRFRLSRNKR---TGNSKGYAFVEFESEEVAKIAAETMNNYLL-MEHLLECHV 126 (214)
T ss_pred CeeEEEEeecccc---cCCcCceEEEEeccHHHHHHHHHHhhhhhh-hhheeeeEE
Confidence 5556666654322 123599999999999999999999999999 999999999
No 134
>KOG3152|consensus
Probab=96.78 E-value=0.0011 Score=54.85 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=59.6
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHHHHhCCcc
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT--------GESKG----VAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~t--------g~~~g----~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
..-.||++ ||+.++..-|+++|+.||.|-.|.+-....+ |.+.. =|.|+|.+...|+.+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 55789999 9999999999999999999998888776555 33222 27899999999999999999999
Q ss_pred cCC
Q psy882 88 LPN 90 (253)
Q Consensus 88 ~~~ 90 (253)
|++
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 963
No 135
>KOG4210|consensus
Probab=96.75 E-value=0.0015 Score=56.15 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+..+++|++ +.+.+.+.+...++..+|.+..........+..++|++++.|...+.+..|+......... +..+...
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~--~~~~~~d 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD--GNKGEKD 163 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc--cccccCc
Confidence 457899999 9999999988999999998888777666668889999999999999999999853322321 2222211
Q ss_pred Eccc--------------------------------c----ccCc--------------CcccCcEEEEEcCCHHHHHHH
Q psy882 99 IAAK--------------------------------L----EFKE--------------GYRGGQKISVQYTSPQSAAYA 128 (253)
Q Consensus 99 ~a~~--------------------------------~----~~~~--------------~~v~~g~~fv~f~~~~~A~~A 128 (253)
.... + .|.. ..+.+|+++|.|....++..|
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 1111 0 0000 011189999999999999999
Q ss_pred HHhhCCCcCCCCCcEEEEecCC
Q psy882 129 RDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 129 ~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+.. +...+ .++++.+..++.
T Consensus 244 ~~~-~~~~~-~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 244 LND-QTRSI-GGRPLRLEEDEP 263 (285)
T ss_pred hhc-ccCcc-cCcccccccCCC
Confidence 977 77888 999999999553
No 136
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.71 E-value=0.0048 Score=38.93 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=38.6
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
+.|=|. .|.+..+ .+...|.+||+|..+.+... ..+.+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 345566 6665554 45668889999999877622 568999999999999984
No 137
>KOG4307|consensus
Probab=96.62 E-value=0.0072 Score=56.54 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=64.5
Q ss_pred CCc-EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 21 PHS-RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 21 ~~~-~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+++ .|-+. .|+.++-+||.++|.-|-.+-.-.+++..+.|...|=|.|.|.+.++|..|...|++..| ..+.+++.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEEE
Confidence 445 66677 999999999999999998775544455556899999999999999999999999999999 47887775
Q ss_pred E
Q psy882 99 I 99 (253)
Q Consensus 99 ~ 99 (253)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 138
>KOG1855|consensus
Probab=96.50 E-value=0.0038 Score=55.17 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=58.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeec---CCCCC----------cccEEEEEecCHHHHHHHHH
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKD---RNTGE----------SKGVAYIRFSKTSEAAKAVE 81 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~---~~tg~----------~~g~~fV~f~~~~~A~~ai~ 81 (253)
+.++-++++|.+. ||.+-.-+-|.++|+.+|.|..|+|+.- +.+.+ .+-+|+|+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 3445689999999 9999999999999999999999999876 43321 25689999999999999998
Q ss_pred HhCC
Q psy882 82 EMNG 85 (253)
Q Consensus 82 ~l~~ 85 (253)
.++.
T Consensus 305 ~~~~ 308 (484)
T KOG1855|consen 305 LLNP 308 (484)
T ss_pred hhch
Confidence 7754
No 139
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.46 E-value=0.011 Score=42.47 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=49.1
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEe-ecC------CCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCV-KDR------NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~-~~~------~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+-|-|- .|+. ....+.+.|++||.|.+..-+ ++. .......+-.|.|.+..+|.+|+. .||..+. ..-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS-GSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET-TCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc-CcE
Confidence 3456665 7777 567788999999999776411 110 011235699999999999999997 5999984 133
Q ss_pred cEEEEEcc
Q psy882 94 PIKVLIAA 101 (253)
Q Consensus 94 ~i~v~~a~ 101 (253)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55566653
No 140
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.43 E-value=0.02 Score=43.80 Aligned_cols=77 Identities=19% Similarity=0.418 Sum_probs=53.7
Q ss_pred CCCCCCCcEEEEE-cC-----CCCCHH----HHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 16 YNDEPPHSRLFIL-CG-----KDVTED----DLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp-----~~~te~----~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
....||..+|.|. +. .....+ +|.+.|..||.+.=+|++.+ .-+|+|...+.|-+|+. ++|
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg 91 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDG 91 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCC
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCC
Confidence 3457788889999 76 223333 66788889999887777765 58999999999999986 899
Q ss_pred cccCCCCCcEEEEEcccc
Q psy882 86 EFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 86 ~~~~~~g~~i~v~~a~~~ 103 (253)
..+ .|+.|+|..-.++
T Consensus 92 ~~v--~g~~l~i~LKtpd 107 (146)
T PF08952_consen 92 IQV--NGRTLKIRLKTPD 107 (146)
T ss_dssp SEE--TTEEEEEEE----
T ss_pred cEE--CCEEEEEEeCCcc
Confidence 999 7999999887763
No 141
>KOG2416|consensus
Probab=96.42 E-value=0.0042 Score=57.00 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=56.6
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcC-CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSP-FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~-~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
+...+.++.|||. |-.-.|.-.|++++.. .|.|.+.+|-+- +..|||.|.+.++|-....+|+|..++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccC
Confidence 3345678999999 9999999999999995 666766633222 779999999999999999999999886
No 142
>KOG0114|consensus
Probab=96.35 E-value=0.0062 Score=43.59 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=33.9
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+|.|||.|.+..+|.+|+..|+|..+ .++.|.|.+
T Consensus 57 rGTAFVVYedi~dAk~A~dhlsg~n~-~~ryl~vly 91 (124)
T KOG0114|consen 57 RGTAFVVYEDIFDAKKACDHLSGYNV-DNRYLVVLY 91 (124)
T ss_pred CceEEEEehHhhhHHHHHHHhccccc-CCceEEEEe
Confidence 89999999999999999999999999 999999988
No 143
>KOG0126|consensus
Probab=96.35 E-value=0.00026 Score=55.59 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=49.2
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.-+++.+|+ +-.+..++- |+.|+. |..+++.+||+|+.. ... ..|+..|||..|.||.|+|+..
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 347888888 444444444 777732 888999999997777 333 9999999999999999999643
No 144
>KOG0105|consensus
Probab=96.31 E-value=0.032 Score=44.17 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=57.4
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.-.|.|. ||.+.+.++|+.+..+.|.|-...+.+| |++.|+|...++-+-|+..|....+...|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 4568899 9999999999999999999977777666 4899999999999999999988877444443333
No 145
>KOG0113|consensus
Probab=96.29 E-value=0.0038 Score=52.75 Aligned_cols=67 Identities=15% Similarity=-0.001 Sum_probs=55.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
++-.++||.-|. ++.+..|.. |..|. .|..++.++|||||++ ... ..|-+..+|..|+|+.|-|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 344678888888 777877776 77763 3888999999998887 555 9999999999999999999984
No 146
>KOG0112|consensus
Probab=96.24 E-value=0.0093 Score=57.29 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+++.+|++ |+.++.-..|...|..||+|..|.+-.. ..|++|.|.+...|+.|+..+-|..+++-.+.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 45678999999 9999999999999999999988754322 5699999999999999999999999987778899
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.++.+
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 999887
No 147
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.02 E-value=0.0085 Score=49.84 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=35.5
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
+|||||+|.+.++|..|+..|+|..+ .|++|.|.+..
T Consensus 157 ~g~~~v~f~~~~~~~~a~~~~~~~~~-~~~~~~v~~~~ 193 (306)
T COG0724 157 RGFAFVEFESEESAEKAIEELNGKEL-EGRPLRVQKAQ 193 (306)
T ss_pred CceEEEEecCHHHHHHHHHHcCCCeE-CCceeEeeccc
Confidence 89999999999999999999999999 99999999954
No 148
>KOG1996|consensus
Probab=95.95 E-value=0.021 Score=48.25 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCCCcc-cEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccccccCc
Q psy882 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESK-GVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKE 107 (253)
Q Consensus 35 e~~l~~~f~~~G~v~~i~i~~~~~tg~~~-g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~~~ 107 (253)
++++.+.+++||.|..|.|..++...... ---||+|...+.|.+|+-.|||..| .|+.+...+...++|+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACFYNLEKFSN 371 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeeheeccHHhhhh
Confidence 36678899999999999888887544444 3589999999999999999999999 59998888877666643
No 149
>KOG0128|consensus
Probab=95.87 E-value=0.0037 Score=59.56 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=68.1
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
...|||. .|+..|.++|+.++..+|.+++++++..+ .|+.+|.++|.|.++.+|..++.+.....+ ..+.+.|..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~--rE~~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGK--RENNGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhh--hhcCcccccc
Confidence 4679999 99999999999999999999999988886 799999999999999999999887766666 5667777776
Q ss_pred cc
Q psy882 101 AK 102 (253)
Q Consensus 101 ~~ 102 (253)
.+
T Consensus 813 np 814 (881)
T KOG0128|consen 813 NP 814 (881)
T ss_pred CC
Confidence 65
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.86 E-value=0.017 Score=39.84 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.4
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
..+.|.|.|.+.+.|.+|.+.|+|... .|+.|.|.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdV-fG~kI~v~~~ 74 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDV-FGNKISVSFS 74 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--S-SSS--EEESS
T ss_pred eCCEEEEEeCCHHHHHHHHHhhccccc-ccceEEEEEc
Confidence 357799999999999999999999999 9999999994
No 151
>KOG4307|consensus
Probab=95.69 E-value=0.012 Score=55.17 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE-IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~-i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
..-+.+..|||. ||..+++.++.+.|...-.|.+ |.|.+.+ +++.++-|||.|..++++..|..--+..-+ ..+.
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~--G~r~ 505 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYP--GHRI 505 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccccccc--CceE
Confidence 444567899999 9999999999999998667766 6666665 778899999999999998888753333333 4688
Q ss_pred EEEEEccc
Q psy882 95 IKVLIAAK 102 (253)
Q Consensus 95 i~v~~a~~ 102 (253)
|+|.....
T Consensus 506 irv~si~~ 513 (944)
T KOG4307|consen 506 IRVDSIAD 513 (944)
T ss_pred EEeechhh
Confidence 88877555
No 152
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.58 E-value=0.038 Score=44.02 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=50.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcC-CCce---EEEEE-eecCCCCC-cccEEEEEecCHHHHHHHHHHhCCcccCC-CC
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSP-FGNI---QEIRC-VKDRNTGE-SKGVAYIRFSKTSEAAKAVEEMNGEFLPN-HS 92 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~-~G~v---~~i~i-~~~~~tg~-~~g~~fV~f~~~~~A~~ai~~l~~~~~~~-~g 92 (253)
...+|-|+ ||+..||+++.+.++. ++.- ..+.- ..+..... .-.-|||.|.+.+++...+..++|..+.. .|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 45689999 9999999999998887 6655 34431 12222222 23569999999999999999999987742 12
Q ss_pred --CcEEEEEccc
Q psy882 93 --KPIKVLIAAK 102 (253)
Q Consensus 93 --~~i~v~~a~~ 102 (253)
....|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2445555543
No 153
>KOG0149|consensus
Probab=95.54 E-value=0.0045 Score=50.64 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=49.9
Q ss_pred ccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhhHHHHHHHHHhcC--ceecCeEEEEEecC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIYYILVEFSQTLHG--AEMYGSRLKVMEAD 238 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~~~~~~Ai~~lnG--~~i~G~~l~v~~a~ 238 (253)
..+||.+|+ .+..+.|.+ |..| .+|..++..+|||||.|.+.+.|..++.. -.|+||+-.|.+|.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 468999999 666666666 6666 45888899999998888666666666654 48999999987765
No 154
>KOG2202|consensus
Probab=95.45 E-value=0.0084 Score=49.69 Aligned_cols=68 Identities=22% Similarity=0.528 Sum_probs=53.0
Q ss_pred HHHHhhc-CCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccccccCc
Q psy882 37 DLRQGFS-PFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKE 107 (253)
Q Consensus 37 ~l~~~f~-~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~~~ 107 (253)
++...|+ +||+|.++.|.... .-.-.|=.||.|..+++|++|++.||+..+ .|++|...++....|..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecCcCchhh
Confidence 3334444 89999888555441 223468899999999999999999999999 69999999987755555
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.22 E-value=0.32 Score=35.60 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=48.2
Q ss_pred CCcEEEEE-cC-CCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 21 PHSRLFIL-CG-KDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 21 ~~~~lfv~-Lp-~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
..+.|.|- .| ..++-++|..+.+.+- .|..++|++|. ..++=.+.+.|.+.++|......+||..+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34555554 44 4455556665555543 46778898883 345668999999999999999999999874
No 156
>KOG1365|consensus
Probab=95.16 E-value=0.12 Score=45.44 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=55.3
Q ss_pred EE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcccccc
Q psy882 27 IL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEF 105 (253)
Q Consensus 27 v~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~ 105 (253)
.+ |||..++.+|-.+|.---...-.+.+-....|...|.+.|.|.+.+.-+.|++. +...+ .++.|.|-.+..++|
T Consensus 65 aRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryievYka~ge~f 141 (508)
T KOG1365|consen 65 ARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIEVYKATGEEF 141 (508)
T ss_pred ecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCceeeeccCchhh
Confidence 35 999999999999997532222222222223456679999999999999999875 56666 489999988888555
Q ss_pred Cc
Q psy882 106 KE 107 (253)
Q Consensus 106 ~~ 107 (253)
-.
T Consensus 142 ~~ 143 (508)
T KOG1365|consen 142 LK 143 (508)
T ss_pred eE
Confidence 43
No 157
>KOG0804|consensus
Probab=94.84 E-value=0.12 Score=46.36 Aligned_cols=66 Identities=27% Similarity=0.364 Sum_probs=56.8
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcC-CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSP-FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~-~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
++.|+|- .|..++-.||-.++.. .-.|.++++++|. -.++=..+|.|.+.++|...-+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 8899998 9999999999999976 4457899999974 233557999999999999999999999874
No 158
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.72 E-value=0.066 Score=44.41 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=40.4
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+|....|......+ .+++|||+|.+.++|+.|+ .|+|..| .+++|.|.....
T Consensus 29 ~G~I~~V~I~~D~e------t~gfAfVtF~d~~aaetAl-lLnGa~l-~d~~I~It~~~~ 80 (243)
T PLN03121 29 CGAIEHVEIIRSGE------YACTAYVTFKDAYALETAV-LLSGATI-VDQRVCITRWGQ 80 (243)
T ss_pred cCCeEEEEEecCCC------cceEEEEEECCHHHHHHHH-hcCCCee-CCceEEEEeCcc
Confidence 56666666554321 1479999999999999999 8999999 999999988443
No 159
>KOG0415|consensus
Probab=94.54 E-value=0.027 Score=48.85 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=34.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
=.||||+|.+.+++++|+-+|++..| ..++|.|.|+.
T Consensus 281 LqyaFiEFen~escE~AyFKMdNvLI-DDrRIHVDFSQ 317 (479)
T KOG0415|consen 281 LQYAFIEFENKESCEQAYFKMDNVLI-DDRRIHVDFSQ 317 (479)
T ss_pred hheeeeeecchhhHHHHHhhhcceee-ccceEEeehhh
Confidence 35899999999999999999999999 99999999944
No 160
>KOG0151|consensus
Probab=94.29 E-value=0.05 Score=51.24 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=35.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
+.+|||.|.++.+|++|++.|+|+.+ .+..|++.|++
T Consensus 219 r~cgfvafmnR~D~era~k~lqg~iv-~~~e~K~gWgk 255 (877)
T KOG0151|consen 219 RNCGFVAFMNRADAERALKELQGIIV-MEYEMKLGWGK 255 (877)
T ss_pred cccceeeehhhhhHHHHHHHhcceee-eeeeeeecccc
Confidence 78999999999999999999999999 99999999964
No 161
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.83 E-value=0.35 Score=31.47 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=42.9
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCC----CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPF----GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~----G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l 83 (253)
.+|+|. + .+.+.++|+.+|..| + ...|.++-|. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 568998 8 568889999999988 4 4588888884 4888999999999998754
No 162
>KOG4676|consensus
Probab=93.57 E-value=0.094 Score=46.15 Aligned_cols=110 Identities=13% Similarity=0.182 Sum_probs=78.4
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT---GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~t---g~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.|-|. |.++++.++++.+|...|.|.+++++..... ......|||.|.+...+..| +.|.+..+ -++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvf--vdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVF--VDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhcccee--eeeeEEEEe
Confidence 78899 9999999999999999999999998874322 23356899999999999888 56777776 377666655
Q ss_pred ccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcE
Q psy882 100 AAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPM 143 (253)
Q Consensus 100 a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l 143 (253)
.-. +.+.--+||+.|.+......++ ..+|..+ ...+|
T Consensus 86 ~~~-----~~~p~r~af~~l~~~navprll-~pdg~Lp-~~~~l 122 (479)
T KOG4676|consen 86 YGD-----EVIPDRFAFVELADQNAVPRLL-PPDGVLP-GDRPL 122 (479)
T ss_pred cCC-----CCCccHHHHHhcCccccccccc-CCCCccC-CCCcc
Confidence 432 2223334777777766665544 3456554 44555
No 163
>KOG0153|consensus
Probab=93.46 E-value=0.076 Score=46.00 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=34.4
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+++|||+|.++.+|+.|..+.-...+..|.+|.|.|+.+
T Consensus 264 ~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 264 KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 889999999999999999888776655999999999655
No 164
>KOG0115|consensus
Probab=93.10 E-value=0.16 Score=42.35 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=60.4
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC--CCCcEEEE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN--HSKPIKVL 98 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~--~g~~i~v~ 98 (253)
...|||. |+..++-+.|.+-|+.||+|....++-| +.++..+=++|.|.+.-.|.+|+..+.-.-+++ .+.+.-|.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 3779999 9999999999999999999976655555 367888899999999999999998874433321 34554444
Q ss_pred Ec
Q psy882 99 IA 100 (253)
Q Consensus 99 ~a 100 (253)
..
T Consensus 110 P~ 111 (275)
T KOG0115|consen 110 PM 111 (275)
T ss_pred hh
Confidence 43
No 165
>KOG0132|consensus
Probab=92.66 E-value=0.16 Score=48.56 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=36.0
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
|++|||....+++|.+|+.+|+...+ .++.|+|.|+-.
T Consensus 457 R~cAfI~M~~RqdA~kalqkl~n~kv-~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 457 RGCAFIKMVRRQDAEKALQKLSNVKV-ADKTIKIAWAVG 494 (894)
T ss_pred CceeEEEEeehhHHHHHHHHHhcccc-cceeeEEeeecc
Confidence 99999999999999999999999998 999999999654
No 166
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.15 E-value=0.3 Score=39.16 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred CHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CcccCCCCCcEEEEEccc
Q psy882 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN--GEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 34 te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~--~~~~~~~g~~i~v~~a~~ 102 (253)
....|+++|..++.+..+..++. -+-..|.|.+.+.|..|...|+ +..+ .|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEccc
Confidence 34789999999999988877765 5668999999999999999998 8888 688999988865
No 167
>KOG2068|consensus
Probab=91.77 E-value=0.09 Score=45.38 Aligned_cols=79 Identities=15% Similarity=0.399 Sum_probs=59.1
Q ss_pred CcEEEEE-cCCCCCHHHHH---HhhcCCCceEEEEEeecCC--CCCcc-cEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 22 HSRLFIL-CGKDVTEDDLR---QGFSPFGNIQEIRCVKDRN--TGESK-GVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~---~~f~~~G~v~~i~i~~~~~--tg~~~-g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.+-+||- |+....++.+. +.|.+||.|..|.+-+++. ++... --++|+|...++|..||..-+|... +|+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhh
Confidence 3567887 87776655543 7888999999998888762 12111 1399999999999999999988888 7888
Q ss_pred EEEEEccc
Q psy882 95 IKVLIAAK 102 (253)
Q Consensus 95 i~v~~a~~ 102 (253)
++..+..+
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 77776655
No 168
>KOG4574|consensus
Probab=90.47 E-value=0.21 Score=48.13 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=64.0
Q ss_pred EEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcccc
Q psy882 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
.++. .+-..+...|-.+++.||.|.+++.+++ ..+|.|+|...+.|-.|.++|+|..+...|-+.+|.++++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444 4556777889999999999999998888 56899999999999999999999988767889999999885
Q ss_pred cc
Q psy882 104 EF 105 (253)
Q Consensus 104 ~~ 105 (253)
.+
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 44
No 169
>KOG4209|consensus
Probab=89.85 E-value=0.4 Score=39.95 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=33.3
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
.+||+||+|.+.+.++.|+. |+|..+ .|+.+.+.|
T Consensus 142 ~k~~~yvef~~~~~~~~ay~-l~gs~i-~~~~i~vt~ 176 (231)
T KOG4209|consen 142 PKGFAYVEFSSYELVEEAYK-LDGSEI-PGPAIEVTL 176 (231)
T ss_pred cceeEEEecccHhhhHHHhh-cCCccc-ccccceeee
Confidence 48999999999999999998 999999 999999988
No 170
>KOG2135|consensus
Probab=89.47 E-value=0.19 Score=45.33 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEE-cCCCCCH-HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 17 NDEPPHSRLFIL-CGKDVTE-DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te-~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.-..+++.|-+. .|+..+. .+|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|-. ..+..+ .++.
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avl--nnr~ 437 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVL--NNRF 437 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-ccccee--cCce
Confidence 344566777777 7777665 679999999999999976433 4479999999999977643 578888 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.|-.+..
T Consensus 438 iKl~whnps~ 447 (526)
T KOG2135|consen 438 IKLFWHNPSP 447 (526)
T ss_pred eEEEEecCCc
Confidence 9999988733
No 171
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.33 E-value=2 Score=28.77 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=39.1
Q ss_pred EEEEE--cCCCCCHHHHHHhhcCCCce-----EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 24 RLFIL--CGKDVTEDDLRQGFSPFGNI-----QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 24 ~lfv~--Lp~~~te~~l~~~f~~~G~v-----~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
++||. --..++..+|..++...+.| -.|.|... |+||+-. .+.|+.+++.|++..+ .|+.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~-~~~a~~v~~~l~~~~~--~gk~v~ 70 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVP-EEVAEKVLEALNGKKI--KGKKVR 70 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--S--SS----
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEEC-HHHHHHHHHHhcCCCC--CCeeEE
Confidence 46664 45678888888888776543 45666544 8998876 5578889999999999 799999
Q ss_pred EEEc
Q psy882 97 VLIA 100 (253)
Q Consensus 97 v~~a 100 (253)
|+.|
T Consensus 71 ve~A 74 (74)
T PF03880_consen 71 VERA 74 (74)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9865
No 172
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=88.69 E-value=0.97 Score=32.25 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=31.7
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCC---CCcEEEEecC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPP---GIPMVVVPDF 149 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~~~ 149 (253)
+.|||||-|.+++.|.+-...++|...+. .+...|.||.
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 48999999999999999999999977631 2456677754
No 173
>KOG4661|consensus
Probab=88.51 E-value=0.48 Score=43.90 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=35.9
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
|+|+||.+.+..+|.++|..||..+| .|+-|.|.-+++
T Consensus 447 RCYGfVTMSts~eAtkCI~hLHrTEL-HGrmISVEkaKN 484 (940)
T KOG4661|consen 447 RCYGFVTMSTSAEATKCIEHLHRTEL-HGRMISVEKAKN 484 (940)
T ss_pred ceeEEEEecchHHHHHHHHHhhhhhh-cceeeeeeeccc
Confidence 88999999999999999999999999 999999998654
No 174
>KOG1996|consensus
Probab=88.41 E-value=0.45 Score=40.48 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=30.8
Q ss_pred EEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 115 ISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 115 ~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
-||+|...++|.+|+-.|||..+ +|+.++..|
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyF-GGr~v~A~F 363 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYF-GGRVVSACF 363 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCcee-cceeeehee
Confidence 89999999999999999999999 999999888
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.41 E-value=2 Score=37.36 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH-HHHhCCcccCC-CCCcEEEEEccccccCcCcccC-cE-EEEEc
Q psy882 44 PFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA-VEEMNGEFLPN-HSKPIKVLIAAKLEFKEGYRGG-QK-ISVQY 119 (253)
Q Consensus 44 ~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a-i~~l~~~~~~~-~g~~i~v~~a~~~~~~~~~v~~-g~-~fv~f 119 (253)
.-+.+..++|+.. ..+||.--...-|..- +..|.+..+++ .|+.+++-.-....- ...-. .+ .||.|
T Consensus 102 nrkhlsniRVvQK-------NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s--~nst~~h~gvYITy 172 (480)
T COG5175 102 NRKHLSNIRVVQK-------NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSS--LNSTASHAGVYITY 172 (480)
T ss_pred cccccccceeeec-------ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccc--cccccccceEEEEe
Confidence 3445566666543 3667665444443322 23466666654 455544433221110 01111 23 59999
Q ss_pred CCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 120 TSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 120 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.+.++|.+++...+|..+ +|+.|+..|..
T Consensus 173 ~~kedAarcIa~vDgs~~-DGr~lkatYGT 201 (480)
T COG5175 173 STKEDAARCIAEVDGSLL-DGRVLKATYGT 201 (480)
T ss_pred cchHHHHHHHHHhccccc-cCceEeeecCc
Confidence 999999999999999999 99999999943
No 176
>KOG4660|consensus
Probab=87.99 E-value=0.82 Score=42.15 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=51.5
Q ss_pred cEEEEE-cCCCCCHHHHHHhhc-CCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC--CCCcEEEE
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFS-PFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN--HSKPIKVL 98 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~-~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~--~g~~i~v~ 98 (253)
+++.|. +|...|...|...-+ ..|.-..+-++.|-.+..+-|||||.|.+.+++..+.++++|..+.. ..+.+.+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 334444 444444444433322 25666667777776667788999999999999999999999987521 23444444
Q ss_pred Ecc
Q psy882 99 IAA 101 (253)
Q Consensus 99 ~a~ 101 (253)
||.
T Consensus 469 YAr 471 (549)
T KOG4660|consen 469 YAR 471 (549)
T ss_pred hhh
Confidence 443
No 177
>KOG2202|consensus
Probab=86.36 E-value=0.57 Score=39.06 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=34.0
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.|=.+|+|...++|+.|+..||+.++ .|++|...+..
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~-~G~pi~ae~~p 146 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWY-NGRPIHAELSP 146 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccc-cCCcceeeecC
Confidence 56689999999999999999999999 99999999943
No 178
>KOG2591|consensus
Probab=85.59 E-value=2.3 Score=39.48 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcC--CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc--ccCCCCCcE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSP--FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE--FLPNHSKPI 95 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~--~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~--~~~~~g~~i 95 (253)
.-|.|.++ ||..+-.++++.+|.. +.++.+|.+--.. -=||+|.+..||+.|...|... .| .|++|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~f--qgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTF--QGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhh--cCcch
Confidence 34667778 9999999999999975 8888898765442 2589999999999998876543 23 56666
Q ss_pred EEEE
Q psy882 96 KVLI 99 (253)
Q Consensus 96 ~v~~ 99 (253)
..+.
T Consensus 245 mARI 248 (684)
T KOG2591|consen 245 MARI 248 (684)
T ss_pred hhhh
Confidence 5544
No 179
>KOG2253|consensus
Probab=85.51 E-value=0.8 Score=43.10 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
..++.|+..++||+ +...+.++-+..++..+|.|.++.. + -|||..|.....+..|+..++...+ .|.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~-------~fgf~~f~~~~~~~ra~r~~t~~~~--~~~ 101 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D-------KFGFCEFLKHIGDLRASRLLTELNI--DDQ 101 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h-------hhcccchhhHHHHHHHHHHhcccCC--Ccc
Confidence 45567788999999 9999999999999999999877642 2 2999999999999999998887777 455
Q ss_pred cEEE
Q psy882 94 PIKV 97 (253)
Q Consensus 94 ~i~v 97 (253)
.+.+
T Consensus 102 kl~~ 105 (668)
T KOG2253|consen 102 KLIE 105 (668)
T ss_pred hhhc
Confidence 4444
No 180
>KOG2314|consensus
Probab=84.57 E-value=1.2 Score=41.24 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=40.9
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
.|+...+.++..++= | .+||.|++|.+..+|+.|++.|||+.|...++..|..
T Consensus 88 ~gk~vn~~~P~~e~g--g--tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 88 AGKIVNMYYPIDEEG--G--TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred hccccceeeccCccC--C--eeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 366555655543322 2 6899999999999999999999999995668888765
No 181
>KOG4285|consensus
Probab=84.35 E-value=2.2 Score=36.51 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccc
Q psy882 36 DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 36 ~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
..|..+|++||.|.+... +.+..+-+|.|.+..+|++|+. .+|..|. ..-.|-|..+..
T Consensus 211 s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~-g~vmiGVkpCtD 269 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIID-GDVMIGVKPCTD 269 (350)
T ss_pred hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeec-cceEEeeeecCC
Confidence 456789999999977642 2335699999999999999997 5899884 234555555443
No 182
>KOG2193|consensus
Probab=78.65 E-value=1.4 Score=39.38 Aligned_cols=103 Identities=19% Similarity=0.087 Sum_probs=65.4
Q ss_pred cccCcEEEEEcCCHHHHHHHHHhhCC-CcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchhhHH-H
Q psy882 109 YRGGQKISVQYTSPQSAAYARDKFHG-FAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKALAQ-A 186 (253)
Q Consensus 109 ~v~~g~~fv~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~~~~-~ 186 (253)
.+.-||+||.+.+..-|.+|+..++| .++ .|.++.+..+-.+ ..++ ..+.+.|++-.. -
T Consensus 34 l~k~gyafvd~pdq~wa~kaie~~sgk~el-qGkr~e~~~sv~k----kqrs--------------rk~Qirnippql~w 94 (584)
T KOG2193|consen 34 LVKSGYAFVDCPDQQWANKAIETLSGKVEL-QGKRQEVEHSVPK----KQRS--------------RKIQIRNIPPQLQW 94 (584)
T ss_pred eeecceeeccCCchhhhhhhHHhhchhhhh-cCceeeccchhhH----HHHh--------------hhhhHhcCCHHHHH
Confidence 45579999999999999999999999 456 8999999884321 1111 124555555111 1
Q ss_pred HHhhh-hcCC---------CCChhhhccccchhhhh--HHH----HHHHHHhcCceecCeEEEEEec
Q psy882 187 TSLLR-SAGL---------STDSRFISRLRLDDFIY--YIL----VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 187 ~~l~~-~~~~---------~~~~~~~~~~~fg~v~~--~~~----~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
+.+-. .+-| .+|.++ + |+. +.. ..||..|||..+....++|+|-
T Consensus 95 evld~Ll~qyg~ve~~eqvnt~~et------a-vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 95 EVLDSLLAQYGTVENCEQVNTDSET------A-VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHhccCCHhHhhhhccchHH------H-HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 10001 1111 123332 1 222 222 8999999999999999999993
No 183
>KOG0533|consensus
Probab=77.56 E-value=3.3 Score=34.72 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=33.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.|.|-|.|...++|.+|+..+||..+ .|++|.+....
T Consensus 124 ~Gta~v~~~r~~DA~~avk~~~gv~l-dG~~mk~~~i~ 160 (243)
T KOG0533|consen 124 LGTADVSFNRRDDAERAVKKYNGVAL-DGRPMKIEIIS 160 (243)
T ss_pred CccceeeecchHhHHHHHHHhcCccc-CCceeeeEEec
Confidence 57899999999999999999999999 99999988843
No 184
>KOG4454|consensus
Probab=76.72 E-value=1.5 Score=35.84 Aligned_cols=51 Identities=14% Similarity=-0.061 Sum_probs=40.1
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
.|-.++|...+.+.- +..||||.|.+.-+..-|+..|||..+ .++.+.+.+
T Consensus 33 aGPV~kv~ip~~~d~-----~~kFa~v~f~~E~sv~~a~~L~ng~~l-~~~e~q~~~ 83 (267)
T KOG4454|consen 33 AGPVYKVGIPSGQDQ-----EQKFAYVFFPNENSVQLAGQLENGDDL-EEDEEQRTL 83 (267)
T ss_pred cCceEEEeCCCCccC-----CCceeeeecccccchhhhhhhcccchh-ccchhhccc
Confidence 456667766653221 122899999999999999999999999 999888888
No 185
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.58 E-value=17 Score=23.94 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 31 ~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
..++-++++..+..|+-. +|..++ .| -||.|.+..+|++|....+|..++
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 456778999999999742 344553 33 588899999999999998888774
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=69.43 E-value=5.4 Score=30.64 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.7
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
|..+-|++.. +--.|.|.+-++|.+|+ .|+|..+ .|+.|.|..
T Consensus 61 GevvLvRfv~-----------~~mwVTF~dg~sALaal-s~dg~~v-~g~~l~i~L 103 (146)
T PF08952_consen 61 GEVVLVRFVG-----------DTMWVTFRDGQSALAAL-SLDGIQV-NGRTLKIRL 103 (146)
T ss_dssp S-ECEEEEET-----------TCEEEEESSCHHHHHHH-HGCCSEE-TTEEEEEEE
T ss_pred CceEEEEEeC-----------CeEEEEECccHHHHHHH-ccCCcEE-CCEEEEEEe
Confidence 5555565554 34679999999999998 6999999 999999988
No 187
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.06 E-value=5.3 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCceecCeEEEEEec
Q psy882 213 YILVEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 213 ~~~~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....+++.|++..+.|++|+|..|
T Consensus 50 ~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 50 EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4449999999999999999999865
No 188
>KOG1995|consensus
Probab=63.78 E-value=2.9 Score=36.58 Aligned_cols=68 Identities=12% Similarity=-0.030 Sum_probs=49.8
Q ss_pred ccccccccchh-hHHHHHhhh-hcCC----------------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCe
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGL----------------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGS 230 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~----------------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~ 230 (253)
....++|+.++ .+....++. |... .+|.++...++=+.|.+ ... ..||.-++++.|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34678999999 455555555 4333 23667777777786666 333 999999999999999
Q ss_pred EEEEEecCC
Q psy882 231 RLKVMEADP 239 (253)
Q Consensus 231 ~l~v~~a~~ 239 (253)
+|+|++|+.
T Consensus 145 ~ikvs~a~~ 153 (351)
T KOG1995|consen 145 TIKVSLAER 153 (351)
T ss_pred Cchhhhhhh
Confidence 999999983
No 189
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.35 E-value=10 Score=24.99 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=25.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEE
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMV 144 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~ 144 (253)
+.-=||.|.+..+|.++....+|..+ .+-.|.
T Consensus 33 ~tGfYIvF~~~~Ea~rC~~~~~~~~~-f~y~m~ 64 (66)
T PF11767_consen 33 RTGFYIVFNDSKEAERCFRAEDGTLF-FTYRMQ 64 (66)
T ss_pred CCEEEEEECChHHHHHHHHhcCCCEE-EEEEEE
Confidence 33458999999999999999999887 554444
No 190
>KOG4410|consensus
Probab=58.18 E-value=38 Score=29.04 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=37.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCce-EEEEEeecCCCCCcccEEEEEecCHH
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTS 74 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v-~~i~i~~~~~tg~~~g~~fV~f~~~~ 74 (253)
-+..+-||++ ||.++--.+|+..+.+-|.+ .++.|.- +.|-||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 3445779999 99999999999999887654 4444432 3788999997643
No 191
>KOG4676|consensus
Probab=56.15 E-value=2.1 Score=37.93 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=50.7
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCccc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~ 88 (253)
++++|. |+..|...++-++|..+|.|...++... ....+|.++|........|+. .+|..+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 779999 9999999999999999999988766533 345688899999999999987 466665
No 192
>KOG0116|consensus
Probab=54.08 E-value=11 Score=34.40 Aligned_cols=36 Identities=11% Similarity=-0.033 Sum_probs=30.0
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.+||||+|.+..+++.|+.+- -..+ ++++|.|+-..
T Consensus 330 ~~fgFV~f~~~~~~~~~i~As-p~~i-g~~kl~Veek~ 365 (419)
T KOG0116|consen 330 PCFGFVEFENAAAVQNAIEAS-PLEI-GGRKLNVEEKR 365 (419)
T ss_pred CceEEEEEeecchhhhhhhcC-cccc-CCeeEEEEecc
Confidence 379999999999999999765 5556 88999998833
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=49.94 E-value=32 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=31.3
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
|.-|.|.|.+..+|=.|+.+++... .|..+.+.|.
T Consensus 125 rqsavVvF~d~~SAC~Av~Af~s~~--pgtm~qCsWq 159 (166)
T PF15023_consen 125 RQSAVVVFKDITSACKAVSAFQSRA--PGTMFQCSWQ 159 (166)
T ss_pred CceEEEEehhhHHHHHHHHhhcCCC--CCceEEeecc
Confidence 7789999999999999999998844 7999999993
No 194
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=47.20 E-value=31 Score=24.71 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=28.9
Q ss_pred cccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCc-EEEEe
Q psy882 109 YRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIP-MVVVP 147 (253)
Q Consensus 109 ~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~-l~v~~ 147 (253)
..+.+.-.|+|.++.+|.+|| .-||..+ .|.. +-|.|
T Consensus 51 ~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~-~g~~mvGV~~ 88 (100)
T PF05172_consen 51 PSGGNWIHITYDNPLSAQRAL-QKNGTIF-SGSLMVGVKP 88 (100)
T ss_dssp -CCTTEEEEEESSHHHHHHHH-TTTTEEE-TTCEEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHH-HhCCeEE-cCcEEEEEEE
Confidence 345778999999999999999 5789888 7754 44666
No 195
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=43.45 E-value=22 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=16.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGF 135 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~ 135 (253)
..-|+|.|.+.++|+.|+..+.-.
T Consensus 37 ~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 37 DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -SEEEEEESS---HHHHHHHHHHT
T ss_pred CCEEEEEECCcchHHHHHHHHHhc
Confidence 345999999999999999887543
No 196
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.91 E-value=34 Score=22.68 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 36 DDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 36 ~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
.+|.+-|...| ++.+++-+..+.++..-.+-+|+.....+... .|+=..+ ++..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~L--g~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTL--GGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhh--CCeeEEEecCc
Confidence 46777788777 57888888888777767788888876654333 2333444 68888887654
No 197
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.90 E-value=42 Score=22.13 Aligned_cols=61 Identities=13% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 36 DDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 36 ~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
++|.+-|...| +|.+++-+..+.++.....-||+.....+...+ ++=..+ ++..++|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l--~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTL--CGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhh--CCeEEEEecCC
Confidence 46677777666 578888888876777778999998877663333 333444 57888888765
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=39.55 E-value=25 Score=28.17 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=26.7
Q ss_pred EEEEcCCHHHHHHHHHhhC--CCcCCCCCcEEEEecC
Q psy882 115 ISVQYTSPQSAAYARDKFH--GFAYPPGIPMVVVPDF 149 (253)
Q Consensus 115 ~fv~f~~~~~A~~A~~~l~--g~~~~~g~~l~v~~~~ 149 (253)
..|.|.+.++|..|...|+ +..+ .|..+++.|+.
T Consensus 34 i~v~f~~~~~A~~~r~~l~~~~~~~-~g~~l~~yf~~ 69 (184)
T PF04847_consen 34 IRVVFESPESAQRARQLLHWDGTSF-NGKRLRVYFGQ 69 (184)
T ss_dssp EEEE-SSTTHHHHHHHTST--TSEE-TTEE-EEE---
T ss_pred EEEEeCCHHHHHHHHHHhccccccc-CCCceEEEEcc
Confidence 5678999999999999999 8888 99999999953
No 199
>KOG2416|consensus
Probab=38.87 E-value=44 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.9
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCC--CCcEEEEe
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPP--GIPMVVVP 147 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~ 147 (253)
+.-|||.|.+.++|.....+|||..-+. ++.|.+.|
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 6789999999999999999999955443 47899988
No 200
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.54 E-value=1.3e+02 Score=20.74 Aligned_cols=55 Identities=11% Similarity=0.359 Sum_probs=39.4
Q ss_pred EEEE-cCCCCCHHHHHHhhcC-CC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy882 25 LFIL-CGKDVTEDDLRQGFSP-FG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~-~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~ 82 (253)
-|+- .+...+-.++++.++. || .|.+|..+.-+ ...-=|||.+...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 4555 8889999999988887 55 46777666654 1122499999999888776544
No 201
>KOG4483|consensus
Probab=34.13 E-value=1.1e+02 Score=27.58 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=45.1
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCce-EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v-~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~ 82 (253)
-..|=|. .|.....+||...|+.|+.- -+|+||-|. ++|..|.+..-|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4667777 99999999999999998764 467788775 899999999999999863
No 202
>KOG1295|consensus
Probab=33.26 E-value=55 Score=29.21 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=48.3
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCc-eEEEEEe-ecCCCCC-cccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGN-IQEIRCV-KDRNTGE-SKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~-v~~i~i~-~~~~tg~-~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
..++|-|. ||+..++.+|.+....+-. +....+. .+..... -.+.+||.|...++.......++|+.+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34677788 9999999999888877543 2222222 1111111 1478999999999999988889998875
No 203
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.42 E-value=81 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.4
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 62 SKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 62 ~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
-+||-||+=.+.+++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 49999999999999999987665544
No 204
>KOG4019|consensus
Probab=30.06 E-value=42 Score=26.81 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=48.9
Q ss_pred EEEEE-cCCCCCH-----HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC-cEE
Q psy882 24 RLFIL-CGKDVTE-----DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK-PIK 96 (253)
Q Consensus 24 ~lfv~-Lp~~~te-----~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~-~i~ 96 (253)
++.+. ++..+.. .....+|.+|-+....++++. .+.--|.|.+.+.|..|.-.+++..+. |+ .++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~--~~~~~k 83 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFN--GKNELK 83 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccC--CCceEE
Confidence 35555 5544433 223466667766655555554 567788999999999999999999984 54 777
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
.-++++
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777765
No 205
>KOG0115|consensus
Probab=29.88 E-value=1.7e+02 Score=24.86 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCCCC--
Q psy882 122 PQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLST-- 197 (253)
Q Consensus 122 ~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~-- 197 (253)
..-|..|...|++... .|+.|+|.|+.. ..+.|.|+. -+..+.+-+ |..|..
T Consensus 4 rt~ae~ak~eLd~~~~-~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFP-KGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred ccHHHHHHHhcCCCCC-CCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 4567888889999998 999999999642 347788887 344443444 554421
Q ss_pred ------Chhhhccccchhhhh---HHHHHHHHHhc----CceecCeEEEEEecC
Q psy882 198 ------DSRFISRLRLDDFIY---YILVEFSQTLH----GAEMYGSRLKVMEAD 238 (253)
Q Consensus 198 ------~~~~~~~~~fg~v~~---~~~~~Ai~~ln----G~~i~G~~l~v~~a~ 238 (253)
|.. ++..+=|.|-+ -...+|...++ |.+..|++.-|.-+.
T Consensus 60 ~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 60 RAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred hheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 222 34445553444 22277777774 345566766665444
No 206
>KOG2068|consensus
Probab=29.65 E-value=17 Score=31.69 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
|...+|..........+--.-.-++|.|...++|..|+...+|..+ .|+.|+..+...
T Consensus 105 gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~-dg~~lka~~gtt 162 (327)
T KOG2068|consen 105 GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD-DGRALKASLGTT 162 (327)
T ss_pred ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh-hhhhhHHhhCCC
Confidence 6666666555332111111111299999999999999999999998 999888887444
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=29.28 E-value=88 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=22.5
Q ss_pred EEEEEcCCHHHHHHHHHhhCCCcC
Q psy882 114 KISVQYTSPQSAAYARDKFHGFAY 137 (253)
Q Consensus 114 ~~fv~f~~~~~A~~A~~~l~g~~~ 137 (253)
-+.++|.+.++|+.-...+||+.+
T Consensus 56 mVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 56 MVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEEECCHHHHHHHHHHhCCCcc
Confidence 399999999999999999999987
No 208
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.67 E-value=1.9e+02 Score=19.57 Aligned_cols=55 Identities=11% Similarity=0.347 Sum_probs=38.7
Q ss_pred EEEE-cCCCCCHHHHHHhhcC-CC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy882 25 LFIL-CGKDVTEDDLRQGFSP-FG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~-~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~ 82 (253)
-|+- .+..++-.+|++.++. || .|..|..+.-+ ...-=|||.+...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 4555 8899999999988876 55 46677665554 1122499999888887766543
No 209
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=27.86 E-value=67 Score=24.32 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCChhhhccccchhhhh-HHHHHHHHHhcCceecCeEEEEEecCCC
Q psy882 196 STDSRFISRLRLDDFIY-YILVEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 196 ~~~~~~~~~~~fg~v~~-~~~~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
|... ......++ |.- .....++..|.|..+.|++|+|..-..+
T Consensus 20 P~~~-~~~~~~ic-v~g~~~~~~~L~~l~~~~~~~~~i~v~~~~~~ 63 (145)
T PF13689_consen 20 PDSA-PSSPFRIC-VLGDDPFAEALSTLAGKQVGGRPIRVRRLSSP 63 (145)
T ss_pred CCCC-CCCCeEEE-EECChHHHHHHHHhhhcccCCCcEEEEECCCC
Confidence 4443 24455566 555 5567899999999999999999875433
No 210
>KOG2591|consensus
Probab=27.49 E-value=80 Score=29.79 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCC--CcCCCCCcEEE
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG--FAYPPGIPMVV 145 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g--~~~~~g~~l~v 145 (253)
-+.|.++++..+ -.||.|.+..||+.|...|.. +.| -|++|..
T Consensus 202 Pk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~f-qgKpImA 246 (684)
T KOG2591|consen 202 PKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTF-QGKPIMA 246 (684)
T ss_pred CCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhh-cCcchhh
Confidence 567777777643 469999999999999988753 344 5555543
No 211
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.62 E-value=1.7e+02 Score=18.94 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.3
Q ss_pred HHHHHhhcCCCceEEEEE
Q psy882 36 DDLRQGFSPFGNIQEIRC 53 (253)
Q Consensus 36 ~~l~~~f~~~G~v~~i~i 53 (253)
.+|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999865543
No 212
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.56 E-value=56 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=10.4
Q ss_pred CCCCHHHHHHhhcCCCc
Q psy882 31 KDVTEDDLRQGFSPFGN 47 (253)
Q Consensus 31 ~~~te~~l~~~f~~~G~ 47 (253)
..+++++|++.|.+++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36788999999988653
No 213
>KOG2295|consensus
Probab=22.38 E-value=13 Score=34.66 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCccc
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~ 88 (253)
...|.||+. +++..+-.+|..+++.+.-+..+.+-.+....+-...++|+|.-.-+-..|+.+||+..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 346889999 999999999999999987666655443322233456889999988888888889998876
No 214
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.18 E-value=1.2e+02 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccc
Q psy882 66 AYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 66 ~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
|||+|.+..+|..|++.+.... .+.+.+..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCC
No 215
>PRK11901 hypothetical protein; Reviewed
Probab=21.53 E-value=1.9e+02 Score=25.45 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=41.4
Q ss_pred EEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcc-cEEEEEecCHHHHHHHHHHhCCcc
Q psy882 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESK-GVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 25 lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~-g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
-|.= |--..+++.|..+..+.+ +..+++......|+.- ..-+-.|.+.++|..|+..|....
T Consensus 245 ~YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3443 555667888888888775 4556666654444422 234457999999999999886543
No 216
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.89 E-value=1.2e+02 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=21.5
Q ss_pred cEEEEEcCCHHHHHHHHHhhCCCcC
Q psy882 113 QKISVQYTSPQSAAYARDKFHGFAY 137 (253)
Q Consensus 113 g~~fv~f~~~~~A~~A~~~l~g~~~ 137 (253)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999998876655
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.73 E-value=1.9e+02 Score=25.07 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=43.6
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCC-------CCCcccEEEEEecCHHHH
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN-------TGESKGVAYIRFSKTSEA 76 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~-------tg~~~g~~fV~f~~~~~A 76 (253)
.+.=.++.|... +..+++-..+...|-+||+|.+|.++.+.. ..+..-...+.|-+.+.+
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 344456778888 888888888999999999999999987751 112234567777777664
No 218
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.60 E-value=2.2e+02 Score=20.28 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=27.3
Q ss_pred CCCHHHHHHhhcC-CCceEEEEEeecCCC----CCcccEEEEEecCHHHHHHH
Q psy882 32 DVTEDDLRQGFSP-FGNIQEIRCVKDRNT----GESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 32 ~~te~~l~~~f~~-~G~v~~i~i~~~~~t----g~~~g~~fV~f~~~~~A~~a 79 (253)
..+-.+|++-+.+ ++.=.+..++..-.| |.+.|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677888766654 664334444433222 466778877 6666665543
Done!