Query psy882
Match_columns 253
No_of_seqs 152 out of 2427
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:03:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 9.1E-31 3.1E-35 224.0 16.3 209 16-241 35-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 3.4E-30 1.2E-34 219.6 16.2 200 19-243 19-266 (284)
3 4f02_A Polyadenylate-binding p 99.9 1.7E-26 5.7E-31 189.1 13.7 130 18-150 11-180 (213)
4 1b7f_A Protein (SXL-lethal pro 99.9 1E-24 3.4E-29 171.1 14.2 125 21-148 2-168 (168)
5 1fxl_A Paraneoplastic encephal 99.9 2.2E-24 7.5E-29 168.7 15.6 125 21-148 1-167 (167)
6 3md3_A Nuclear and cytoplasmic 99.9 2.8E-24 9.4E-29 168.0 13.6 123 23-149 1-165 (166)
7 2qfj_A FBP-interacting repress 99.9 4.3E-24 1.5E-28 174.2 14.4 129 20-151 26-205 (216)
8 1l3k_A Heterogeneous nuclear r 99.9 3.1E-24 1.1E-28 172.5 13.0 132 15-151 6-183 (196)
9 3nmr_A Cugbp ELAV-like family 99.9 1.1E-23 3.8E-28 166.0 15.9 129 21-149 2-175 (175)
10 2cjk_A Nuclear polyadenylated 99.9 7E-24 2.4E-28 166.2 10.3 124 21-150 2-165 (167)
11 3smz_A Protein raver-1, ribonu 99.9 1.1E-22 3.8E-27 173.0 14.9 128 20-150 93-263 (284)
12 1fje_B Nucleolin RBD12, protei 99.9 1.6E-23 5.6E-28 165.5 7.2 129 17-150 8-173 (175)
13 3pgw_A U1-A; protein-RNA compl 99.9 4.4E-22 1.5E-26 169.1 16.0 81 17-102 4-89 (282)
14 2adc_A Polypyrimidine tract-bi 99.9 6.4E-22 2.2E-26 163.5 14.5 128 15-150 27-227 (229)
15 3tyt_A Heterogeneous nuclear r 99.9 1.4E-21 4.8E-26 158.9 14.1 120 20-147 2-203 (205)
16 1qm9_A Polypyrimidine tract-bi 99.9 1.8E-21 6.3E-26 156.8 11.7 121 22-150 3-196 (198)
17 2yh0_A Splicing factor U2AF 65 99.9 4.8E-21 1.6E-25 154.0 13.5 170 20-243 2-196 (198)
18 2g4b_A Splicing factor U2AF 65 99.9 1.3E-21 4.5E-26 153.8 10.0 119 20-148 2-171 (172)
19 4fxv_A ELAV-like protein 1; RN 99.9 3.1E-21 1.1E-25 138.9 10.9 82 19-102 16-98 (99)
20 2ghp_A U4/U6 snRNA-associated 99.8 8.2E-21 2.8E-25 162.1 11.4 125 21-150 116-290 (292)
21 3sde_A Paraspeckle component 1 99.8 1.5E-20 5.3E-25 158.2 12.8 124 18-150 18-178 (261)
22 3s8s_A Histone-lysine N-methyl 99.8 5.2E-20 1.8E-24 135.0 11.5 82 19-102 3-85 (110)
23 2lkz_A RNA-binding protein 5; 99.8 4.3E-20 1.5E-24 131.8 7.9 84 17-102 4-94 (95)
24 2jrs_A RNA-binding protein 39; 99.8 4.5E-19 1.5E-23 129.6 12.7 86 16-103 20-106 (108)
25 2la6_A RNA-binding protein FUS 99.8 6.3E-19 2.2E-23 126.6 12.2 85 15-101 6-99 (99)
26 1p27_B RNA-binding protein 8A; 99.8 4E-19 1.4E-23 129.1 11.1 90 12-103 13-103 (106)
27 2cqc_A Arginine/serine-rich sp 99.8 4.6E-19 1.6E-23 126.1 10.9 86 15-102 8-94 (95)
28 2lxi_A RNA-binding protein 10; 99.8 3.2E-20 1.1E-24 131.5 4.7 81 22-104 1-84 (91)
29 2e5h_A Zinc finger CCHC-type a 99.8 5.8E-19 2E-23 125.4 11.3 85 15-101 9-94 (94)
30 3bs9_A Nucleolysin TIA-1 isofo 99.8 4E-19 1.4E-23 124.4 10.2 82 19-102 3-85 (87)
31 2dnz_A Probable RNA-binding pr 99.8 8.4E-19 2.9E-23 124.8 12.0 84 19-104 2-86 (95)
32 2cq0_A Eukaryotic translation 99.8 7.6E-19 2.6E-23 127.0 11.9 88 15-104 8-96 (103)
33 2dgs_A DAZ-associated protein 99.8 1.1E-18 3.8E-23 125.3 12.6 87 16-105 4-91 (99)
34 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.3E-23 125.2 12.7 87 15-104 10-97 (100)
35 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.8E-23 127.9 10.6 87 15-103 6-93 (103)
36 3md1_A Nuclear and cytoplasmic 99.8 7.7E-19 2.6E-23 121.8 11.1 80 22-103 1-81 (83)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.1E-19 1.4E-23 123.8 9.6 82 18-101 3-85 (85)
38 1x5u_A Splicing factor 3B subu 99.8 7.6E-19 2.6E-23 127.4 11.3 88 15-104 8-96 (105)
39 1whw_A Hypothetical protein ri 99.8 9.2E-19 3.1E-23 125.6 11.0 86 17-104 3-89 (99)
40 3ns6_A Eukaryotic translation 99.8 1.6E-19 5.4E-24 130.1 6.9 82 19-102 3-92 (100)
41 2x1f_A MRNA 3'-END-processing 99.8 7.6E-19 2.6E-23 125.4 10.2 82 21-104 1-83 (96)
42 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-18 1E-22 124.3 13.4 87 16-105 9-99 (105)
43 2dgo_A Cytotoxic granule-assoc 99.8 1.5E-18 5.1E-23 128.0 11.9 87 15-103 8-95 (115)
44 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-19 2.6E-23 129.6 10.2 88 15-104 18-106 (115)
45 1x4h_A RNA-binding protein 28; 99.8 1.7E-18 5.7E-23 126.8 11.9 88 15-104 8-102 (111)
46 1oo0_B CG8781-PA, drosophila Y 99.8 6.9E-19 2.3E-23 128.8 9.7 91 12-104 16-107 (110)
47 2cph_A RNA binding motif prote 99.8 1.7E-18 5.8E-23 125.9 11.5 88 15-104 8-98 (107)
48 2khc_A Testis-specific RNP-typ 99.8 1.3E-18 4.5E-23 128.9 10.9 85 15-101 33-118 (118)
49 3s7r_A Heterogeneous nuclear r 99.8 2.1E-18 7.2E-23 120.8 10.8 82 16-100 5-87 (87)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.1E-23 125.7 9.8 88 16-105 6-94 (102)
51 2div_A TRNA selenocysteine ass 99.8 9.6E-19 3.3E-23 125.5 9.2 84 18-103 5-94 (99)
52 2d9p_A Polyadenylate-binding p 99.8 3.7E-18 1.3E-22 123.4 12.3 87 14-104 7-94 (103)
53 3p5t_L Cleavage and polyadenyl 99.8 3.5E-19 1.2E-23 125.7 6.6 79 23-103 2-83 (90)
54 1x5t_A Splicing factor 3B subu 99.8 8.1E-19 2.8E-23 125.1 8.2 84 19-104 2-87 (96)
55 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-18 5.7E-23 125.0 9.9 87 16-104 6-93 (102)
56 3ex7_B RNA-binding protein 8A; 99.8 1.9E-18 6.5E-23 129.5 10.4 91 13-105 13-104 (126)
57 1p1t_A Cleavage stimulation fa 99.8 5.4E-19 1.9E-23 127.9 7.0 86 16-103 2-88 (104)
58 2dng_A Eukaryotic translation 99.8 3.6E-18 1.2E-22 123.5 11.3 86 15-104 8-94 (103)
59 2kxn_B Transformer-2 protein h 99.8 2E-18 7E-23 130.1 10.2 86 16-103 40-126 (129)
60 2ywk_A Putative RNA-binding pr 99.8 2E-18 7E-23 122.8 9.6 85 15-102 9-94 (95)
61 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-18 7.5E-23 125.2 9.8 90 15-104 6-97 (106)
62 1x4e_A RNA binding motif, sing 99.8 6.6E-19 2.3E-23 122.8 6.6 81 19-101 2-83 (85)
63 2cpe_A RNA-binding protein EWS 99.8 2.7E-18 9.2E-23 126.2 10.1 88 15-104 8-104 (113)
64 3ulh_A THO complex subunit 4; 99.8 4.2E-18 1.4E-22 123.9 11.0 83 16-101 23-106 (107)
65 2cpf_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 124.0 8.7 84 19-104 2-89 (98)
66 1s79_A Lupus LA protein; RRM, 99.8 1.8E-18 6.2E-23 125.2 8.8 81 18-102 7-88 (103)
67 3r27_A HnRNP L, heterogeneous 99.8 2.3E-18 8E-23 123.2 9.2 84 15-104 14-98 (100)
68 1u6f_A Tcubp1, RNA-binding pro 99.8 5.3E-18 1.8E-22 129.2 11.7 88 18-107 38-126 (139)
69 2cqd_A RNA-binding region cont 99.8 3.5E-18 1.2E-22 126.2 10.3 85 15-102 10-95 (116)
70 4f25_A Polyadenylate-binding p 99.8 2.8E-18 9.5E-23 126.7 9.7 79 21-103 4-83 (115)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-18 1.4E-22 123.5 10.3 86 15-104 8-95 (104)
72 2dhg_A TRNA selenocysteine ass 99.8 3.1E-18 1.1E-22 124.0 9.2 85 17-104 4-91 (104)
73 2m2b_A RNA-binding protein 10; 99.8 7.2E-19 2.5E-23 132.9 6.0 90 11-103 12-108 (131)
74 2cq3_A RNA-binding protein 9; 99.8 1.6E-17 5.5E-22 120.0 12.7 88 14-105 7-95 (103)
75 4a8x_A RNA-binding protein wit 99.8 3E-18 1E-22 120.0 8.6 82 20-103 2-85 (88)
76 2dgv_A HnRNP M, heterogeneous 99.8 5.6E-18 1.9E-22 119.8 10.0 83 17-103 3-86 (92)
77 2cqp_A RNA-binding protein 12; 99.8 2.9E-18 1E-22 122.8 8.6 85 17-103 10-95 (98)
78 2fy1_A RNA-binding motif prote 99.8 5.8E-18 2E-22 125.2 10.3 84 19-105 4-88 (116)
79 3n9u_C Cleavage and polyadenyl 99.7 4.4E-18 1.5E-22 132.3 9.7 81 21-103 54-137 (156)
80 2ek1_A RNA-binding protein 12; 99.7 2.1E-18 7.2E-23 122.7 7.2 84 17-102 10-94 (95)
81 2do0_A HnRNP M, heterogeneous 99.7 1.5E-17 5.3E-22 122.3 12.1 85 15-102 8-93 (114)
82 1x5o_A RNA binding motif, sing 99.7 2.8E-17 9.7E-22 120.9 13.5 86 16-102 19-111 (114)
83 3ucg_A Polyadenylate-binding p 99.7 6.1E-18 2.1E-22 118.8 9.5 80 21-103 5-85 (89)
84 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-17 4E-22 120.7 11.2 86 15-104 8-94 (103)
85 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-17 3.8E-22 123.7 10.9 85 15-107 24-111 (119)
86 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.1E-22 119.7 11.6 87 14-104 7-94 (103)
87 1wex_A Hypothetical protein (r 99.7 1.8E-17 6E-22 120.2 11.5 87 14-106 7-94 (104)
88 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-17 4E-22 129.9 11.2 86 17-104 34-120 (156)
89 2dh8_A DAZ-associated protein 99.7 3.8E-18 1.3E-22 123.7 7.9 87 15-104 9-96 (105)
90 2cq1_A PTB-like protein L; RRM 99.7 2.5E-17 8.4E-22 118.7 11.9 84 15-106 8-94 (101)
91 2cq4_A RNA binding motif prote 99.7 3.2E-18 1.1E-22 126.0 7.2 79 21-102 24-103 (114)
92 2mss_A Protein (musashi1); RNA 99.7 3.3E-18 1.1E-22 116.4 6.7 74 24-100 1-75 (75)
93 2rs2_A Musashi-1, RNA-binding 99.7 8.3E-18 2.8E-22 123.0 9.2 86 16-104 19-105 (109)
94 2err_A Ataxin-2-binding protei 99.7 8.8E-18 3E-22 122.8 9.2 87 13-103 20-107 (109)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-18 1E-22 123.4 6.4 85 15-103 12-98 (100)
96 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-17 4.6E-22 130.8 10.7 87 15-103 65-152 (165)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.5E-17 5.1E-22 126.6 10.5 83 16-100 57-140 (140)
98 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.1E-18 1.4E-22 116.4 6.6 75 23-100 1-76 (77)
99 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-17 4.1E-22 119.2 9.3 81 18-103 5-90 (96)
100 1sjq_A Polypyrimidine tract-bi 99.7 5.1E-18 1.7E-22 122.7 7.2 80 19-106 13-95 (105)
101 2kt5_A RNA and export factor-b 99.7 2.6E-17 8.8E-22 123.0 11.4 83 18-103 31-114 (124)
102 2cpi_A CCR4-NOT transcription 99.7 2.1E-17 7.4E-22 121.1 10.6 85 18-104 11-102 (111)
103 1wg5_A Heterogeneous nuclear r 99.7 3E-17 1E-21 119.0 11.2 86 16-105 9-96 (104)
104 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.6E-22 129.1 10.2 85 17-103 65-150 (158)
105 2dis_A Unnamed protein product 99.7 1.1E-17 3.8E-22 122.0 8.6 84 19-104 5-93 (109)
106 2nlw_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 121.3 8.6 82 17-102 10-99 (105)
107 1x4b_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 124.9 7.2 83 19-104 24-107 (116)
108 2ki2_A SS-DNA binding protein 99.7 3.6E-18 1.2E-22 120.4 5.6 78 23-103 2-80 (90)
109 3md3_A Nuclear and cytoplasmic 99.7 4.4E-17 1.5E-21 126.8 12.0 97 2-101 68-165 (166)
110 1x4d_A Matrin 3; structural ge 99.7 1.1E-17 3.9E-22 120.6 7.8 77 18-102 11-91 (102)
111 2dgw_A Probable RNA-binding pr 99.7 4.6E-17 1.6E-21 114.9 10.6 82 18-104 6-88 (91)
112 2lea_A Serine/arginine-rich sp 99.7 6.3E-18 2.1E-22 128.4 6.4 86 16-103 41-127 (135)
113 1wez_A HnRNP H', FTP-3, hetero 99.7 4.2E-17 1.5E-21 117.8 10.5 83 17-104 10-93 (102)
114 2a3j_A U1 small nuclear ribonu 99.7 2.8E-17 9.7E-22 123.3 9.7 83 16-103 23-110 (127)
115 1x4a_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 118.5 10.8 85 15-104 15-100 (109)
116 2cpy_A RNA-binding protein 12; 99.7 1.8E-17 6.1E-22 122.1 8.1 83 17-103 10-94 (114)
117 2jwn_A Embryonic polyadenylate 99.7 3.6E-17 1.2E-21 122.2 9.7 79 21-102 35-114 (124)
118 1wel_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 124.1 7.8 84 18-104 21-105 (124)
119 2cpj_A Non-POU domain-containi 99.7 6.7E-17 2.3E-21 115.9 10.6 82 15-104 8-90 (99)
120 2ytc_A PRE-mRNA-splicing facto 99.7 4.9E-17 1.7E-21 113.1 9.7 79 15-101 5-85 (85)
121 1wf1_A RNA-binding protein RAL 99.7 3.9E-17 1.3E-21 119.5 9.5 91 2-102 7-99 (110)
122 2wbr_A GW182, gawky, LD47780P; 99.7 3.1E-17 1.1E-21 113.7 8.2 75 20-102 5-80 (89)
123 2db1_A Heterogeneous nuclear r 99.7 3E-17 1E-21 121.7 8.7 82 17-102 12-97 (118)
124 2fc9_A NCL protein; structure 99.7 7.4E-17 2.5E-21 116.0 10.5 84 15-104 8-92 (101)
125 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.4E-22 124.8 8.5 82 18-103 40-125 (136)
126 1why_A Hypothetical protein ri 99.7 1E-16 3.5E-21 114.5 10.9 83 16-104 11-94 (97)
127 2fc8_A NCL protein; structure 99.7 1E-16 3.4E-21 115.5 11.0 84 16-104 9-93 (102)
128 1x4f_A Matrin 3; structural ge 99.7 6.2E-17 2.1E-21 118.4 9.3 78 18-103 21-102 (112)
129 3q2s_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 134.9 9.0 81 21-103 67-150 (229)
130 2dnq_A RNA-binding protein 4B; 99.7 1.5E-16 5.1E-21 112.0 10.6 77 18-104 4-81 (90)
131 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.5E-21 117.5 10.7 80 19-103 5-85 (115)
132 2g4b_A Splicing factor U2AF 65 99.7 1E-16 3.4E-21 125.8 10.6 95 2-101 77-172 (172)
133 2cpx_A Hypothetical protein FL 99.7 1.8E-17 6E-22 122.1 5.8 88 15-104 18-106 (115)
134 2krb_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 114.0 5.9 72 22-97 1-80 (81)
135 2lmi_A GRSF-1, G-rich sequence 99.7 3E-17 1E-21 119.5 6.4 83 17-103 6-92 (107)
136 1b7f_A Protein (SXL-lethal pro 99.7 3.2E-16 1.1E-20 122.3 12.4 96 2-100 72-168 (168)
137 2lcw_A RNA-binding protein FUS 99.5 2.3E-18 7.9E-23 127.2 0.0 86 17-104 2-96 (116)
138 1fj7_A Nucleolin RBD1, protein 99.7 8.6E-18 3E-22 121.0 3.0 83 18-104 13-96 (101)
139 1nu4_A U1A RNA binding domain; 99.7 4.2E-17 1.4E-21 116.4 6.5 81 18-103 4-89 (97)
140 2e5j_A Methenyltetrahydrofolat 99.7 2.1E-16 7.2E-21 112.9 9.8 79 18-103 15-94 (97)
141 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.2E-21 112.7 10.0 78 15-102 15-94 (97)
142 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6E-22 112.7 3.8 74 24-100 1-75 (75)
143 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.8E-21 117.3 8.3 79 19-105 7-86 (111)
144 1x4c_A Splicing factor, argini 99.7 3.2E-16 1.1E-20 114.2 10.6 78 17-103 10-93 (108)
145 2xs2_A Deleted in azoospermia- 99.7 3.9E-17 1.3E-21 117.7 5.2 81 18-103 5-86 (102)
146 2i2y_A Fusion protein consists 99.7 1.7E-16 5.9E-21 122.4 9.3 81 16-103 67-148 (150)
147 2yh0_A Splicing factor U2AF 65 99.7 2.6E-16 8.9E-21 126.2 10.6 83 20-104 112-195 (198)
148 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 116.3 8.2 78 21-103 15-93 (109)
149 2la4_A Nuclear and cytoplasmic 99.7 1.1E-16 3.7E-21 115.2 7.5 77 18-102 23-100 (101)
150 2jvo_A Nucleolar protein 3; nu 99.7 2.1E-16 7.2E-21 115.3 8.8 79 15-103 24-103 (108)
151 2f3j_A RNA and export factor b 99.7 2.1E-16 7.3E-21 125.3 9.5 83 18-103 84-167 (177)
152 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-16 7.1E-21 115.4 8.6 78 18-103 21-99 (109)
153 2kvi_A Nuclear polyadenylated 99.7 3.4E-16 1.1E-20 111.6 9.1 77 17-103 5-83 (96)
154 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-16 4E-21 113.9 6.5 82 16-104 10-92 (96)
155 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5.3E-21 116.4 7.3 78 19-102 25-104 (111)
156 1fxl_A Paraneoplastic encephal 99.7 6.3E-16 2.1E-20 120.3 11.0 96 2-100 71-167 (167)
157 2qfj_A FBP-interacting repress 99.7 5.2E-16 1.8E-20 126.1 11.0 82 20-103 123-205 (216)
158 2dgt_A RNA-binding protein 30; 99.7 7.3E-16 2.5E-20 108.9 10.2 79 16-104 4-83 (92)
159 2hgm_A HNRPF protein, heteroge 99.7 1.9E-16 6.6E-21 118.4 7.2 84 17-105 37-123 (126)
160 2e44_A Insulin-like growth fac 99.6 7.4E-16 2.5E-20 109.7 9.8 80 19-104 12-93 (96)
161 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-15 4.6E-20 109.0 10.9 80 15-104 8-90 (99)
162 2j8a_A Histone-lysine N-methyl 99.6 3.1E-16 1.1E-20 115.9 7.6 78 23-102 3-95 (136)
163 2cjk_A Nuclear polyadenylated 99.6 1.1E-16 3.7E-21 124.9 5.6 96 2-103 70-166 (167)
164 2hvz_A Splicing factor, argini 99.6 2.3E-16 8E-21 113.4 6.8 75 23-104 1-76 (101)
165 2dgu_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 111.3 9.3 79 16-104 5-84 (103)
166 2dnp_A RNA-binding protein 14; 99.6 6.4E-16 2.2E-20 108.7 8.5 78 17-104 4-82 (90)
167 1l3k_A Heterogeneous nuclear r 99.6 8.6E-16 3E-20 122.9 10.2 100 2-104 81-184 (196)
168 3egn_A RNA-binding protein 40; 99.6 1.5E-16 5.1E-21 121.8 5.0 84 17-102 40-129 (143)
169 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4E-20 107.4 8.6 80 16-104 5-85 (89)
170 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-15 4.1E-20 137.1 10.9 85 19-105 99-184 (437)
171 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.6E-20 108.0 8.8 80 18-105 4-84 (94)
172 4f02_A Polyadenylate-binding p 99.6 4.8E-16 1.7E-20 126.7 7.4 97 2-103 84-181 (213)
173 3nmr_A Cugbp ELAV-like family 99.6 1.9E-15 6.4E-20 118.6 10.5 84 17-101 90-175 (175)
174 1wg1_A KIAA1579 protein, homol 99.6 1.3E-15 4.3E-20 106.9 8.4 76 20-104 3-79 (88)
175 2cq2_A Hypothetical protein LO 99.6 5E-16 1.7E-20 113.7 6.5 79 18-102 21-105 (114)
176 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.6E-21 120.9 4.0 83 18-105 42-125 (139)
177 2cqh_A IGF-II mRNA-binding pro 99.6 5.7E-16 2E-20 109.7 6.5 78 18-104 4-84 (93)
178 1x5p_A Negative elongation fac 99.6 4.3E-15 1.5E-19 106.0 11.1 79 16-104 9-88 (97)
179 2dha_A FLJ20171 protein; RRM d 99.6 4.7E-16 1.6E-20 115.9 6.1 80 19-102 20-104 (123)
180 2e5i_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 109.6 12.2 80 19-104 20-103 (124)
181 2pe8_A Splicing factor 45; RRM 99.6 2.2E-15 7.4E-20 109.3 9.2 86 20-107 6-98 (105)
182 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.3E-20 112.1 8.0 64 19-83 5-72 (114)
183 1fje_B Nucleolin RBD12, protei 99.6 2.9E-15 1E-19 117.8 9.4 94 2-103 80-174 (175)
184 3zzy_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 110.1 10.5 78 23-105 29-108 (130)
185 1sjr_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 115.0 9.9 79 22-104 46-125 (164)
186 3beg_B Splicing factor, argini 99.6 3.3E-15 1.1E-19 110.1 8.2 74 20-102 14-93 (115)
187 2diu_A KIAA0430 protein; struc 99.6 6.6E-15 2.3E-19 103.0 9.2 73 18-102 4-83 (96)
188 2hzc_A Splicing factor U2AF 65 99.6 2.8E-15 9.6E-20 104.6 6.8 72 19-99 3-86 (87)
189 2bz2_A Negative elongation fac 99.6 8.2E-15 2.8E-19 109.0 9.4 79 16-104 33-112 (121)
190 2voo_A Lupus LA protein; RNA-b 99.5 2.8E-14 9.7E-19 114.6 10.1 78 21-102 108-186 (193)
191 3u1l_A PRE-mRNA-splicing facto 99.5 3.8E-14 1.3E-18 116.9 9.8 79 18-102 130-228 (240)
192 1wf0_A TDP-43, TAR DNA-binding 99.5 2.1E-14 7.1E-19 100.5 6.6 76 20-104 3-79 (88)
193 2adc_A Polypyrimidine tract-bi 99.5 1.5E-13 5.2E-18 113.1 11.9 77 19-102 148-227 (229)
194 1qm9_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 112.8 8.9 78 19-102 117-196 (198)
195 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-13 5.1E-18 116.3 10.8 79 17-101 202-281 (282)
196 3ue2_A Poly(U)-binding-splicin 99.5 6E-14 2.1E-18 103.7 6.6 86 20-107 18-113 (118)
197 2dit_A HIV TAT specific factor 99.5 3.5E-13 1.2E-17 98.7 10.2 82 16-103 9-102 (112)
198 3sde_A Paraspeckle component 1 99.5 2.1E-13 7.2E-18 114.5 10.1 92 2-103 85-179 (261)
199 3v4m_A Splicing factor U2AF 65 99.5 9.6E-14 3.3E-18 100.5 6.8 85 20-106 3-100 (105)
200 3tyt_A Heterogeneous nuclear r 99.4 1.7E-13 5.9E-18 111.1 8.3 79 20-100 121-204 (205)
201 1jmt_A Splicing factor U2AF 35 99.4 4.6E-14 1.6E-18 102.0 4.1 71 27-100 20-103 (104)
202 2kn4_A Immunoglobulin G-bindin 99.4 1.2E-13 4.2E-18 107.1 4.6 121 111-241 12-151 (158)
203 2i2y_A Fusion protein consists 99.4 6E-14 2E-18 108.0 1.7 127 112-240 13-148 (150)
204 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.4E-12 1.5E-16 90.8 10.5 75 21-104 9-91 (100)
205 3tht_A Alkylated DNA repair pr 99.3 7E-12 2.4E-16 108.7 9.0 110 18-133 14-133 (345)
206 3s6e_A RNA-binding protein 39; 99.2 1.1E-11 3.7E-16 90.9 5.3 80 21-106 6-96 (114)
207 2dnr_A Synaptojanin-1; RRM dom 99.2 1.3E-10 4.3E-15 80.6 8.3 75 18-103 3-86 (91)
208 1owx_A Lupus LA protein, SS-B, 99.0 1.7E-09 6E-14 79.5 10.4 79 16-102 12-95 (121)
209 2lea_A Serine/arginine-rich sp 99.0 1.4E-10 4.9E-15 87.5 3.7 111 114-242 6-129 (135)
210 3dxb_A Thioredoxin N-terminall 99.0 1.4E-09 4.8E-14 88.8 8.0 74 32-107 140-217 (222)
211 1ufw_A Synaptojanin 2; RNP dom 98.9 1.5E-09 5.1E-14 75.5 6.0 75 16-101 9-93 (95)
212 1rk8_A CG8781-PA, CG8781-PA pr 98.9 6E-10 2.1E-14 86.9 2.7 126 117-243 11-154 (165)
213 4fxv_A ELAV-like protein 1; RN 98.9 7.5E-10 2.6E-14 78.9 2.9 67 173-240 19-98 (99)
214 3s8s_A Histone-lysine N-methyl 98.7 5.6E-09 1.9E-13 75.9 2.7 70 173-243 6-88 (110)
215 2cqb_A Peptidyl-prolyl CIS-tra 98.7 3E-08 1E-12 70.6 5.9 72 171-242 10-94 (102)
216 2lkz_A RNA-binding protein 5; 98.7 8.3E-09 2.8E-13 72.9 2.8 65 174-238 10-93 (95)
217 3pgw_S U1-70K; protein-RNA com 98.7 4.2E-09 1.4E-13 94.5 1.4 67 173-239 102-181 (437)
218 3md1_A Nuclear and cytoplasmic 98.7 1.6E-08 5.4E-13 69.1 3.8 68 174-242 2-82 (83)
219 3p5t_L Cleavage and polyadenyl 98.6 7.3E-09 2.5E-13 72.3 1.2 68 174-241 2-84 (90)
220 2lxi_A RNA-binding protein 10; 98.6 1E-08 3.4E-13 71.8 1.7 69 174-243 2-85 (91)
221 2e5h_A Zinc finger CCHC-type a 98.6 4.9E-08 1.7E-12 68.3 5.3 70 169-238 12-94 (94)
222 2cpz_A CUG triplet repeat RNA- 98.6 5.9E-08 2E-12 70.7 5.5 71 172-243 24-107 (115)
223 2fc8_A NCL protein; structure 98.6 3.3E-08 1.1E-12 70.3 4.0 72 171-243 13-94 (102)
224 1x4h_A RNA-binding protein 28; 98.6 6.2E-08 2.1E-12 70.0 4.9 73 170-243 12-103 (111)
225 1whw_A Hypothetical protein ri 98.6 5.9E-08 2E-12 68.7 4.6 70 173-243 8-90 (99)
226 2jrs_A RNA-binding protein 39; 98.6 4.2E-08 1.4E-12 70.9 3.8 71 171-242 24-107 (108)
227 1x5u_A Splicing factor 3B subu 98.5 5E-08 1.7E-12 69.8 4.1 72 170-241 12-96 (105)
228 2dgo_A Cytotoxic granule-assoc 98.5 8E-08 2.7E-12 69.9 5.2 72 171-243 13-97 (115)
229 4f25_A Polyadenylate-binding p 98.5 6.1E-08 2.1E-12 70.8 4.4 39 111-150 44-82 (115)
230 2cq0_A Eukaryotic translation 98.5 8.4E-08 2.9E-12 68.4 5.0 72 171-243 13-97 (103)
231 2cqh_A IGF-II mRNA-binding pro 98.5 6.9E-08 2.4E-12 67.5 4.1 70 173-243 8-85 (93)
232 3mdf_A Peptidyl-prolyl CIS-tra 98.5 5.1E-08 1.7E-12 66.9 3.3 67 172-238 6-85 (85)
233 3bs9_A Nucleolysin TIA-1 isofo 98.5 4E-08 1.4E-12 67.7 2.8 66 173-238 6-84 (87)
234 4a8x_A RNA-binding protein wit 98.5 5.2E-08 1.8E-12 67.2 3.4 68 174-241 5-86 (88)
235 2dgu_A Heterogeneous nuclear r 98.5 6.5E-08 2.2E-12 69.1 3.9 70 173-242 11-85 (103)
236 1oo0_B CG8781-PA, drosophila Y 98.5 5.4E-08 1.8E-12 70.3 3.4 72 171-243 24-108 (110)
237 2x1f_A MRNA 3'-END-processing 98.5 7.8E-08 2.7E-12 67.7 4.2 68 174-242 3-83 (96)
238 2dgs_A DAZ-associated protein 98.5 9.4E-08 3.2E-12 67.6 4.6 70 172-243 9-91 (99)
239 2dnm_A SRP46 splicing factor; 98.5 1.1E-07 3.7E-12 67.8 4.9 72 172-243 12-96 (103)
240 1x5t_A Splicing factor 3B subu 98.5 1E-07 3.4E-12 67.0 4.7 70 173-243 5-88 (96)
241 2cpd_A Apobec-1 stimulating pr 98.5 1.3E-07 4.3E-12 67.0 5.0 69 173-241 15-90 (99)
242 2fc9_A NCL protein; structure 98.5 2.1E-07 7.3E-12 66.0 6.0 69 171-240 13-91 (101)
243 1x4c_A Splicing factor, argini 98.5 1.1E-07 3.8E-12 68.5 4.5 71 172-243 14-96 (108)
244 2cqc_A Arginine/serine-rich sp 98.5 1E-07 3.4E-12 66.8 4.2 69 170-238 12-93 (95)
245 2wbr_A GW182, gawky, LD47780P; 98.5 9.6E-08 3.3E-12 66.0 3.9 37 111-148 42-78 (89)
246 2cqp_A RNA-binding protein 12; 98.5 1E-07 3.6E-12 67.2 4.2 69 172-240 14-95 (98)
247 1wf1_A RNA-binding protein RAL 98.5 6E-08 2.1E-12 70.1 3.0 70 174-243 28-103 (110)
248 3r27_A HnRNP L, heterogeneous 98.5 5.3E-08 1.8E-12 69.2 2.6 66 173-238 21-95 (100)
249 1x5s_A Cold-inducible RNA-bind 98.5 4.9E-08 1.7E-12 69.5 2.3 72 171-243 10-94 (102)
250 2d9p_A Polyadenylate-binding p 98.5 1.3E-07 4.4E-12 67.4 4.5 69 172-243 14-95 (103)
251 2do4_A Squamous cell carcinoma 98.5 2E-07 6.9E-12 66.0 5.4 69 172-242 16-97 (100)
252 2cpe_A RNA-binding protein EWS 98.5 2.8E-07 9.4E-12 66.8 6.0 72 171-243 13-105 (113)
253 1x4a_A Splicing factor, argini 98.4 2.8E-07 9.5E-12 66.4 5.7 70 171-240 20-99 (109)
254 1nu4_A U1A RNA binding domain; 98.4 9.7E-08 3.3E-12 67.2 3.1 70 173-242 8-91 (97)
255 2dng_A Eukaryotic translation 98.4 1.2E-07 4.3E-12 67.5 3.7 70 172-243 14-95 (103)
256 2cph_A RNA binding motif prote 98.4 2E-07 6.9E-12 66.8 4.8 72 171-243 13-99 (107)
257 1wi8_A EIF-4B, eukaryotic tran 98.4 3.2E-07 1.1E-11 65.5 5.6 69 173-243 15-96 (104)
258 2kxn_B Transformer-2 protein h 98.4 1.1E-07 3.7E-12 71.0 3.1 70 170-239 43-125 (129)
259 2e5j_A Methenyltetrahydrofolat 98.4 2.3E-07 7.8E-12 65.4 4.4 68 172-239 18-93 (97)
260 1p27_B RNA-binding protein 8A; 98.4 8E-08 2.7E-12 68.8 2.1 70 172-242 22-104 (106)
261 2jvr_A Nucleolar protein 3; RN 98.4 8.4E-08 2.9E-12 69.7 2.1 71 172-242 27-107 (111)
262 1sjq_A Polypyrimidine tract-bi 98.4 5.6E-08 1.9E-12 69.8 1.0 71 172-243 15-94 (105)
263 3ex7_B RNA-binding protein 8A; 98.4 1.1E-07 3.9E-12 70.3 2.7 68 172-239 21-101 (126)
264 2khc_A Testis-specific RNP-typ 98.4 2.3E-07 8E-12 67.7 4.4 68 171-238 38-118 (118)
265 2jvo_A Nucleolar protein 3; nu 98.4 2.1E-07 7.1E-12 67.2 3.9 71 172-243 30-105 (108)
266 2hvz_A Splicing factor, argini 98.4 6.2E-07 2.1E-11 63.6 6.1 40 111-151 36-75 (101)
267 2dgt_A RNA-binding protein 30; 98.4 3E-07 1E-11 64.1 4.4 68 172-239 9-81 (92)
268 2dgw_A Probable RNA-binding pr 98.4 3.1E-07 1E-11 63.9 4.3 68 172-242 9-88 (91)
269 2cq3_A RNA-binding protein 9; 98.4 5E-07 1.7E-11 64.3 5.5 70 171-243 13-95 (103)
270 1h2v_Z 20 kDa nuclear CAP bind 98.4 2.3E-07 7.8E-12 71.3 3.9 72 172-243 38-122 (156)
271 1p1t_A Cleavage stimulation fa 98.4 5.8E-08 2E-12 69.3 0.5 69 174-243 9-90 (104)
272 2la4_A Nuclear and cytoplasmic 98.4 1.1E-07 3.7E-12 67.5 1.9 67 172-238 26-99 (101)
273 2ad9_A Polypyrimidine tract-bi 98.4 2.5E-07 8.7E-12 67.9 3.7 71 172-243 30-109 (119)
274 2dnp_A RNA-binding protein 14; 98.4 1.9E-07 6.3E-12 64.9 2.9 69 172-240 8-81 (90)
275 2diu_A KIAA0430 protein; struc 98.3 1E-06 3.5E-11 61.5 6.4 38 113-151 47-84 (96)
276 2dgp_A Bruno-like 4, RNA bindi 98.3 1.9E-07 6.6E-12 66.8 2.9 71 171-241 11-97 (106)
277 2err_A Ataxin-2-binding protei 98.3 3.2E-07 1.1E-11 66.2 4.0 70 171-241 27-107 (109)
278 3egn_A RNA-binding protein 40; 98.3 2.7E-07 9.3E-12 69.8 3.6 67 173-239 45-129 (143)
279 2rs2_A Musashi-1, RNA-binding 98.3 3.8E-07 1.3E-11 65.8 4.2 71 171-243 23-106 (109)
280 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.3 5.1E-07 1.7E-11 67.8 5.1 68 170-237 60-140 (140)
281 2a3j_A U1 small nuclear ribonu 98.3 5.4E-07 1.8E-11 67.0 5.1 39 111-150 71-109 (127)
282 1x5o_A RNA binding motif, sing 98.3 6.5E-07 2.2E-11 64.9 5.5 69 172-241 24-113 (114)
283 2dhg_A TRNA selenocysteine ass 98.3 9.2E-08 3.2E-12 68.3 0.9 70 172-243 8-92 (104)
284 2dnq_A RNA-binding protein 4B; 98.3 1.2E-06 4.2E-11 60.7 6.7 39 112-151 42-80 (90)
285 2dnz_A Probable RNA-binding pr 98.3 1.4E-06 4.7E-11 60.9 7.0 40 111-151 46-85 (95)
286 2jwn_A Embryonic polyadenylate 98.3 2.4E-07 8.4E-12 68.2 3.2 71 172-243 35-118 (124)
287 2dgx_A KIAA0430 protein; RRM d 98.3 5.1E-07 1.8E-11 63.5 4.6 38 112-150 52-89 (96)
288 1fj7_A Nucleolin RBD1, protein 98.3 1E-07 3.5E-12 67.7 0.9 69 173-243 17-97 (101)
289 1u6f_A Tcubp1, RNA-binding pro 98.3 4E-07 1.4E-11 68.5 4.2 72 171-243 40-124 (139)
290 2fy1_A RNA-binding motif prote 98.3 1.3E-06 4.6E-11 63.7 7.0 40 111-151 47-86 (116)
291 1wex_A Hypothetical protein (r 98.3 3.2E-07 1.1E-11 65.8 3.4 71 172-243 14-93 (104)
292 2cq1_A PTB-like protein L; RRM 98.3 7.7E-07 2.6E-11 63.4 5.1 70 173-243 15-93 (101)
293 1x4b_A Heterogeneous nuclear r 98.3 7.7E-07 2.6E-11 64.8 5.3 71 171-243 25-108 (116)
294 2m2b_A RNA-binding protein 10; 98.3 3.8E-07 1.3E-11 68.0 3.7 68 172-239 22-107 (131)
295 2cqi_A Nucleolysin TIAR; RNA r 98.3 1E-06 3.6E-11 62.6 5.8 40 111-151 54-93 (103)
296 2dnh_A Bruno-like 5, RNA bindi 98.3 5.3E-07 1.8E-11 64.4 4.2 69 173-243 15-99 (105)
297 2ek1_A RNA-binding protein 12; 98.3 2.5E-07 8.5E-12 64.8 2.4 66 173-238 15-93 (95)
298 2cpi_A CCR4-NOT transcription 98.3 8.6E-07 2.9E-11 64.1 5.3 60 91-151 42-101 (111)
299 3n9u_C Cleavage and polyadenyl 98.3 2.2E-07 7.6E-12 71.6 2.3 68 172-239 54-136 (156)
300 3ucg_A Polyadenylate-binding p 98.3 2.6E-07 9E-12 63.8 2.4 66 174-240 7-85 (89)
301 2j76_E EIF-4B, EIF4B, eukaryot 98.3 1.6E-07 5.3E-12 66.7 1.2 71 170-242 16-99 (100)
302 2hgl_A HNRPF protein, heteroge 98.3 1.4E-07 4.8E-12 71.0 0.9 72 169-243 40-127 (136)
303 1x4g_A Nucleolysin TIAR; struc 98.3 1.2E-06 4.1E-11 63.0 5.7 39 112-151 61-99 (109)
304 2dh8_A DAZ-associated protein 98.3 4E-07 1.4E-11 65.1 3.1 72 170-243 13-97 (105)
305 2ywk_A Putative RNA-binding pr 98.3 3E-07 1E-11 64.3 2.4 67 171-238 14-93 (95)
306 2e5i_A Heterogeneous nuclear r 98.3 9.6E-07 3.3E-11 65.3 5.2 67 174-240 26-102 (124)
307 2cpf_A RNA binding motif prote 98.3 1.1E-06 3.6E-11 61.9 5.2 41 110-151 48-88 (98)
308 2do0_A HnRNP M, heterogeneous 98.3 1.4E-06 4.9E-11 63.0 6.0 67 172-239 14-93 (114)
309 2cqd_A RNA-binding region cont 98.3 8.8E-07 3E-11 64.4 4.8 68 171-239 15-95 (116)
310 2dis_A Unnamed protein product 98.3 1.8E-06 6.3E-11 61.9 6.5 41 110-151 50-92 (109)
311 1x5p_A Negative elongation fac 98.3 1.4E-06 4.7E-11 61.3 5.5 40 111-151 48-87 (97)
312 1wg1_A KIAA1579 protein, homol 98.2 1.2E-06 4.2E-11 60.5 5.1 40 110-150 38-77 (88)
313 2cpx_A Hypothetical protein FL 98.2 2.4E-06 8.1E-11 61.9 6.8 40 111-151 66-105 (115)
314 1why_A Hypothetical protein ri 98.2 1.7E-06 5.9E-11 60.8 5.8 38 112-150 53-92 (97)
315 1x4f_A Matrin 3; structural ge 98.2 6E-07 2.1E-11 65.2 3.4 69 170-238 22-100 (112)
316 3ulh_A THO complex subunit 4; 98.2 6.1E-07 2.1E-11 64.3 3.4 67 171-238 27-106 (107)
317 2kt5_A RNA and export factor-b 98.2 1.2E-06 4.1E-11 64.5 5.1 69 170-239 32-113 (124)
318 2cq4_A RNA binding motif prote 98.2 6.7E-07 2.3E-11 64.9 3.6 70 172-243 24-106 (114)
319 2kvi_A Nuclear polyadenylated 98.2 1.1E-06 3.7E-11 61.8 4.5 40 111-151 44-83 (96)
320 1wel_A RNA-binding protein 12; 98.2 5E-07 1.7E-11 66.7 2.8 70 171-242 23-105 (124)
321 2cpj_A Non-POU domain-containi 98.2 2.4E-06 8.3E-11 60.2 6.1 38 112-150 51-88 (99)
322 2la6_A RNA-binding protein FUS 98.2 1.5E-06 5.1E-11 61.3 4.8 37 111-148 62-98 (99)
323 3ns6_A Eukaryotic translation 98.2 1.7E-06 5.7E-11 61.4 5.1 54 92-149 37-91 (100)
324 2dgv_A HnRNP M, heterogeneous 98.2 1.3E-06 4.6E-11 60.6 4.5 40 111-151 47-86 (92)
325 1jmt_A Splicing factor U2AF 35 98.2 8E-07 2.7E-11 63.7 3.2 53 91-148 51-103 (104)
326 2ytc_A PRE-mRNA-splicing facto 98.2 8.1E-07 2.8E-11 60.7 2.9 67 172-238 11-85 (85)
327 2dit_A HIV TAT specific factor 98.2 2.6E-06 9E-11 61.6 5.8 39 111-150 63-101 (112)
328 2pe8_A Splicing factor 45; RRM 98.2 1.3E-06 4.6E-11 62.6 4.2 55 92-149 38-92 (105)
329 2xnq_A Nuclear polyadenylated 98.2 1.8E-06 6.3E-11 60.8 4.7 39 111-150 56-94 (97)
330 3zzy_A Polypyrimidine tract-bi 98.2 9.3E-07 3.2E-11 65.8 3.1 70 172-241 27-107 (130)
331 1fjc_A Nucleolin RBD2, protein 98.1 1.6E-06 5.5E-11 60.7 4.0 39 111-150 52-90 (96)
332 1whx_A Hypothetical protein ri 98.1 3.2E-06 1.1E-10 61.1 5.7 39 111-150 45-83 (111)
333 2dnn_A RNA-binding protein 12; 98.1 1.6E-06 5.5E-11 62.6 3.8 65 172-238 15-91 (109)
334 2div_A TRNA selenocysteine ass 98.1 2E-06 6.8E-11 60.6 4.1 40 111-151 51-94 (99)
335 3v4m_A Splicing factor U2AF 65 98.1 2E-06 6.8E-11 61.7 4.0 57 91-149 39-95 (105)
336 2bz2_A Negative elongation fac 98.1 3.9E-06 1.3E-10 61.7 5.7 39 111-150 72-110 (121)
337 2db1_A Heterogeneous nuclear r 98.1 1.7E-06 5.7E-11 63.3 3.7 70 170-242 14-99 (118)
338 2nlw_A Eukaryotic translation 98.1 1.6E-06 5.4E-11 62.0 3.3 40 110-150 59-99 (105)
339 2cqg_A TDP-43, TAR DNA-binding 98.1 3.3E-06 1.1E-10 60.0 4.7 69 172-243 14-95 (103)
340 2lcw_A RNA-binding protein FUS 97.4 4.6E-07 1.6E-11 66.0 0.0 70 173-243 7-97 (116)
341 1wg5_A Heterogeneous nuclear r 98.1 2.4E-06 8.2E-11 61.0 3.7 70 171-243 13-96 (104)
342 2mss_A Protein (musashi1); RNA 98.1 3.2E-06 1.1E-10 56.3 4.1 36 111-148 40-75 (75)
343 3s6e_A RNA-binding protein 39; 98.1 2.5E-06 8.7E-11 62.1 3.7 49 92-148 42-90 (114)
344 1x4d_A Matrin 3; structural ge 98.1 3.2E-06 1.1E-10 60.3 4.1 38 112-150 52-91 (102)
345 2krb_A Eukaryotic translation 98.0 1.9E-06 6.4E-11 58.5 2.5 35 110-145 45-80 (81)
346 3s7r_A Heterogeneous nuclear r 98.0 2.3E-06 7.8E-11 58.7 2.9 65 172-237 10-87 (87)
347 2cpy_A RNA-binding protein 12; 98.0 4.6E-06 1.6E-10 60.5 4.6 69 171-242 13-95 (114)
348 1sjr_A Polypyrimidine tract-bi 98.0 6E-06 2.1E-10 63.8 5.4 40 111-151 83-124 (164)
349 1x4e_A RNA binding motif, sing 98.0 4.2E-07 1.4E-11 62.3 -1.0 66 173-238 5-83 (85)
350 1wez_A HnRNP H', FTP-3, hetero 98.0 2.2E-06 7.7E-11 61.0 2.7 69 171-241 13-93 (102)
351 3q2s_C Cleavage and polyadenyl 98.0 7.9E-07 2.7E-11 72.9 0.2 68 172-239 67-149 (229)
352 2l9w_A U4/U6 snRNA-associated- 98.0 2.7E-05 9.1E-10 55.3 7.9 71 22-100 21-97 (117)
353 2ki2_A SS-DNA binding protein 98.0 3.2E-06 1.1E-10 58.4 3.2 38 111-150 42-79 (90)
354 2cq2_A Hypothetical protein LO 98.0 2.4E-06 8.3E-11 62.1 2.6 67 173-239 25-105 (114)
355 3lqv_A PRE-mRNA branch site pr 98.0 6.5E-06 2.2E-10 59.6 4.9 37 112-149 47-83 (115)
356 3ue2_A Poly(U)-binding-splicin 98.0 4.3E-06 1.5E-10 61.2 3.5 56 92-148 50-106 (118)
357 1s79_A Lupus LA protein; RRM, 97.9 8.2E-06 2.8E-10 58.2 4.3 51 92-148 36-86 (103)
358 2hgn_A Heterogeneous nuclear r 97.9 2.8E-06 9.5E-11 64.1 1.5 70 171-243 44-125 (139)
359 2hzc_A Splicing factor U2AF 65 97.9 7.3E-06 2.5E-10 56.1 3.4 34 112-147 53-86 (87)
360 3beg_B Splicing factor, argini 97.9 2.6E-06 9E-11 61.9 1.0 66 173-239 16-93 (115)
361 2d9o_A DNAJ (HSP40) homolog, s 97.9 2.6E-05 8.8E-10 55.3 6.1 37 111-150 53-89 (100)
362 1uaw_A Mouse-musashi-1; RNP-ty 97.9 8.4E-06 2.9E-10 54.4 3.3 36 111-148 41-76 (77)
363 2j8a_A Histone-lysine N-methyl 97.8 5.7E-06 2E-10 61.1 2.0 65 174-238 3-94 (136)
364 3u1l_A PRE-mRNA-splicing facto 97.8 9.5E-06 3.2E-10 66.7 3.1 68 172-239 133-228 (240)
365 2lmi_A GRSF-1, G-rich sequence 97.8 1.4E-05 4.8E-10 57.2 3.5 37 111-149 54-90 (107)
366 2f3j_A RNA and export factor b 97.7 3.1E-05 1.1E-09 60.7 4.8 39 111-150 128-166 (177)
367 2e44_A Insulin-like growth fac 97.7 6.3E-05 2.2E-09 52.3 5.6 36 114-150 56-91 (96)
368 2e5g_A U6 snRNA-specific termi 97.7 3E-05 1E-09 53.9 3.7 35 114-150 47-81 (94)
369 3d2w_A TAR DNA-binding protein 97.7 2.5E-05 8.6E-10 54.0 3.1 71 171-243 9-86 (89)
370 2hgm_A HNRPF protein, heteroge 97.6 3.7E-06 1.3E-10 62.3 -1.4 69 171-242 40-122 (126)
371 1iqt_A AUF1, heterogeneous nuc 97.6 2.3E-05 7.7E-10 52.0 2.6 36 111-148 40-75 (75)
372 1uw4_A UPF3X; nonsense mediate 97.6 0.00055 1.9E-08 47.3 9.5 67 23-89 2-71 (91)
373 2dha_A FLJ20171 protein; RRM d 97.5 9.1E-06 3.1E-10 59.9 -0.9 68 172-242 22-106 (123)
374 2xs2_A Deleted in azoospermia- 97.4 1.4E-05 4.9E-10 56.4 -0.6 66 174-243 10-88 (102)
375 2voo_A Lupus LA protein; RNA-b 97.4 9.7E-05 3.3E-09 58.7 4.2 109 121-239 63-186 (193)
376 1whv_A Poly(A)-specific ribonu 97.4 0.00074 2.5E-08 46.9 7.5 54 23-84 16-70 (100)
377 1wf0_A TDP-43, TAR DNA-binding 97.4 0.00014 4.8E-09 49.8 3.9 68 174-243 6-80 (88)
378 3dxb_A Thioredoxin N-terminall 97.3 0.00019 6.5E-09 58.0 4.5 36 112-148 175-210 (222)
379 2dnr_A Synaptojanin-1; RRM dom 97.3 0.00018 6.1E-09 49.6 3.1 45 92-149 40-84 (91)
380 1wey_A Calcipressin 1; structu 97.2 0.00044 1.5E-08 48.7 5.0 72 23-102 6-83 (104)
381 2dnl_A Cytoplasmic polyadenyla 97.1 0.0004 1.4E-08 50.0 4.0 63 174-238 9-86 (114)
382 1ufw_A Synaptojanin 2; RNP dom 97.0 0.00034 1.2E-08 48.5 2.6 31 115-147 61-91 (95)
383 3ctr_A Poly(A)-specific ribonu 97.0 0.0022 7.4E-08 44.7 6.3 52 25-84 9-60 (101)
384 2l08_A Regulator of nonsense t 96.7 0.0028 9.4E-08 44.2 5.4 69 21-89 8-79 (97)
385 3tht_A Alkylated DNA repair pr 96.7 0.0011 3.6E-08 57.4 3.9 38 111-148 55-96 (345)
386 2dhx_A Poly (ADP-ribose) polym 96.4 0.044 1.5E-06 38.4 10.0 73 19-102 5-83 (104)
387 1wwh_A Nucleoporin 35, nucleop 96.0 0.026 9E-07 40.7 7.2 75 18-101 20-95 (119)
388 3pq1_A Poly(A) RNA polymerase; 95.8 0.0047 1.6E-07 55.3 3.2 55 22-81 53-107 (464)
389 2l9w_A U4/U6 snRNA-associated- 95.2 0.018 6.1E-07 40.9 3.7 35 112-147 62-96 (117)
390 3d45_A Poly(A)-specific ribonu 92.1 0.41 1.4E-05 43.3 7.8 55 23-85 441-495 (507)
391 3p3d_A Nucleoporin 53; structu 90.0 0.16 5.5E-06 37.2 2.3 74 24-101 9-97 (132)
392 1wey_A Calcipressin 1; structu 87.8 0.58 2E-05 32.8 3.9 34 115-149 49-82 (104)
393 1owx_A Lupus LA protein, SS-B, 87.8 0.78 2.7E-05 33.1 4.7 35 112-147 55-92 (121)
394 1wwh_A Nucleoporin 35, nucleop 49.8 16 0.00053 26.1 3.5 59 73-147 34-93 (119)
395 3p3d_A Nucleoporin 53; structu 47.8 19 0.00066 26.1 3.7 37 109-147 59-95 (132)
396 2g0c_A ATP-dependent RNA helic 44.7 42 0.0014 21.2 4.8 67 24-101 2-75 (76)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=9.1e-31 Score=223.96 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=161.2
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....+++++|||+ ||+++++++|+++|+.||+|.+|++++++.+ ++|||||+|.+.++|..|++ ++|..+ .|+.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~ 109 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNE 109 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcE
Confidence 3446678999999 9999999999999999999999999998633 58999999999999999995 899999 6999
Q ss_pred EEEEEccc---------------------cccC-c---Ccc-------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCc
Q psy882 95 IKVLIAAK---------------------LEFK-E---GYR-------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIP 142 (253)
Q Consensus 95 i~v~~a~~---------------------~~~~-~---~~v-------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~ 142 (253)
|.|.++.. ..+. . ..+ .+|||||+|.+.++|.+|+..|||..+ .|++
T Consensus 110 i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~ 188 (292)
T 2ghp_A 110 IIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI-EGYT 188 (292)
T ss_dssp CEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE-TTEE
T ss_pred EEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe-CCcE
Confidence 99999876 1121 1 011 389999999999999999999999999 9999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-h-HHHHHhhh-hcCCCC--------Chh-hhccccchhh
Q psy882 143 MVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-L-AQATSLLR-SAGLST--------DSR-FISRLRLDDF 210 (253)
Q Consensus 143 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~-~~~~~l~~-~~~~~~--------~~~-~~~~~~fg~v 210 (253)
|.|.|+.+....... .........++|.||+ . .++..|.. |..|+. +.. ++...|||||
T Consensus 189 l~v~~a~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV 259 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFM 259 (292)
T ss_dssp CEEEECCCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEE
T ss_pred EEEEECCCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEE
Confidence 999996643111100 1223345789999999 6 77777777 777633 333 3677899988
Q ss_pred hh-HHH--HHHHHHhcCceecCeEEEEEecCCCC
Q psy882 211 IY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPK 241 (253)
Q Consensus 211 ~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~ 241 (253)
.| ... .+|+ .|||..|+|++|+|+||+ ||
T Consensus 260 ~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~-~k 291 (292)
T 2ghp_A 260 VFENKDSAERAL-QMNRSLLGNREISVSLAD-KK 291 (292)
T ss_dssp EESSHHHHHHHG-GGTTEEETTEEEEEEECC-CC
T ss_pred EeCCHHHHHHHH-HhcCCEECCcEEEEEEec-CC
Confidence 88 333 9999 999999999999999999 65
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.4e-30 Score=219.58 Aligned_cols=200 Identities=17% Similarity=0.122 Sum_probs=162.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..++++|||+ ||+++++++|+++|+.|| |.+|.+ +.++|||||+|.+.++|..|++.|+|..+ .|+.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v 89 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSV 89 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEE
Confidence 3467999999 999999999999999999 999887 35689999999999999999999999999 6999999
Q ss_pred EEcccc-------------------ccCc-Ccc-------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEE
Q psy882 98 LIAAKL-------------------EFKE-GYR-------------GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMV 144 (253)
Q Consensus 98 ~~a~~~-------------------~~~~-~~v-------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~ 144 (253)
.++.+. .|.. |.| .+|||||+|.+.++|.+|+..|+|..+ .|++|.
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~i~ 168 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL-GPRTLY 168 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECE
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CCcEEE
Confidence 997761 1111 111 178999999999999999999999999 999999
Q ss_pred EEecCCCCCCCCCCCCCCCCcccccccccccccccchh-h-HHHHHhhh-hcCCCC--------Chhhhccccchhhhh-
Q psy882 145 VVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-L-AQATSLLR-SAGLST--------DSRFISRLRLDDFIY- 212 (253)
Q Consensus 145 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~-~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~- 212 (253)
|.|+...... .......+++|.|+| . +++..|.. |..++. +. .+...|||||.+
T Consensus 169 v~~a~~~~~~-------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 234 (284)
T 3smz_A 169 VHWTDAGQLT-------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYE 234 (284)
T ss_dssp EEECCGGGCC-------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECS
T ss_pred EEECCCCCCC-------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeC
Confidence 9996542111 111234679999999 5 46677777 888743 22 355679998888
Q ss_pred HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 213 YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 213 ~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
... .+|+..|||..|+|++|+|+||+ |++.
T Consensus 235 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~-~~~~ 266 (284)
T 3smz_A 235 TAEMAEEAQQQADGLSLGGSHLRVSFCA-PGPP 266 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECC-SSSC
T ss_pred CHHHHHHHHHHhCCCccCCeEEEEEEec-CCCc
Confidence 333 99999999999999999999999 6666
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=1.7e-26 Score=189.11 Aligned_cols=130 Identities=26% Similarity=0.349 Sum_probs=114.0
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+..|+++|||+ ||+++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|..|++.+++..+ .|+.|+
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~ 88 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVR 88 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccc
Confidence 44578999999 999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred EEEccccccC------cCcc---------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcC
Q psy882 97 VLIAAKLEFK------EGYR---------------------------------GGQKISVQYTSPQSAAYARDKFHGFAY 137 (253)
Q Consensus 97 v~~a~~~~~~------~~~v---------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~ 137 (253)
+.++...... .+|| ++|||||+|.+.++|.+|+..|||..+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 9998762110 1111 288999999999999999999999999
Q ss_pred CCCCcEEEEecCC
Q psy882 138 PPGIPMVVVPDFS 150 (253)
Q Consensus 138 ~~g~~l~v~~~~~ 150 (253)
.|++|.|.|+.+
T Consensus 169 -~g~~i~V~~a~~ 180 (213)
T 4f02_A 169 -NDRKVFVGRFKS 180 (213)
T ss_dssp -TTEECEEEECCC
T ss_pred -CCEEEEEEEcCC
Confidence 999999999653
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=1e-24 Score=171.06 Aligned_cols=125 Identities=24% Similarity=0.314 Sum_probs=112.0
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
++++|||+ ||+++++++|+++|++||+|.+|++++++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 56899999 999999999999999999999999999998999999999999999999999999999999 699999999
Q ss_pred ccccccCc--------------------------Ccc-------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC
Q psy882 100 AAKLEFKE--------------------------GYR-------------GGQKISVQYTSPQSAAYARDKFHGFAYPPG 140 (253)
Q Consensus 100 a~~~~~~~--------------------------~~v-------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g 140 (253)
+.+..-.. |.| .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 158 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP-EG 158 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC-TT
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe-cC
Confidence 88632111 111 158999999999999999999999998 77
Q ss_pred --CcEEEEec
Q psy882 141 --IPMVVVPD 148 (253)
Q Consensus 141 --~~l~v~~~ 148 (253)
++|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999984
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=2.2e-24 Score=168.69 Aligned_cols=125 Identities=24% Similarity=0.359 Sum_probs=111.0
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
++++|||+ ||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEe
Confidence 46899999 999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred ccccccCc--------------------------Ccc-------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC
Q psy882 100 AAKLEFKE--------------------------GYR-------------GGQKISVQYTSPQSAAYARDKFHGFAYPPG 140 (253)
Q Consensus 100 a~~~~~~~--------------------------~~v-------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g 140 (253)
+.+..-.. |.| .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 157 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP-SG 157 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC-TT
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc-CC
Confidence 88622111 111 168999999999999999999999999 88
Q ss_pred C--cEEEEec
Q psy882 141 I--PMVVVPD 148 (253)
Q Consensus 141 ~--~l~v~~~ 148 (253)
+ +|+|.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 5 5888884
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.8e-24 Score=167.95 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=109.1
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
++|||+ ||.++++++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 589999 99999999999999999999999999997 578999999999999999999999999999 69999999987
Q ss_pred ccccCc------Ccc-----------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC
Q psy882 102 KLEFKE------GYR-----------------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPPG 140 (253)
Q Consensus 102 ~~~~~~------~~v-----------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g 140 (253)
+..-.. .+| .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 78 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 156 (166)
T 3md3_A 78 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NG 156 (166)
T ss_dssp CCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TT
T ss_pred CCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-CC
Confidence 622111 111 177999999999999999999999999 99
Q ss_pred CcEEEEecC
Q psy882 141 IPMVVVPDF 149 (253)
Q Consensus 141 ~~l~v~~~~ 149 (253)
++|+|.|++
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999964
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.91 E-value=4.3e-24 Score=174.24 Aligned_cols=129 Identities=26% Similarity=0.318 Sum_probs=111.8
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.++++|||+ ||.++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|..|++.|++..+ .|+.|.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 356899999 999999999999999999999999999998999999999999999999999999999998 69999999
Q ss_pred EccccccC---------------cCccc-----------------------------------CcEEEEEcCCHHHHHHH
Q psy882 99 IAAKLEFK---------------EGYRG-----------------------------------GQKISVQYTSPQSAAYA 128 (253)
Q Consensus 99 ~a~~~~~~---------------~~~v~-----------------------------------~g~~fv~f~~~~~A~~A 128 (253)
++...... .+||. +|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 87652210 11111 68999999999999999
Q ss_pred HHhhCCCcCCCCCcEEEEecCCC
Q psy882 129 RDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 129 ~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
+..|||..+ .|++|+|.|+..+
T Consensus 184 ~~~l~g~~~-~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 184 VSSMNLFDL-GGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHTTCBC-SSSBCEEEECSSC
T ss_pred HHHccCCEe-CCcEEEEEEecCC
Confidence 999999999 9999999997654
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.91 E-value=3.1e-24 Score=172.51 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=111.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+.+..+.++|||+ ||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|..|++. ++..+ .|+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~ 82 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGR 82 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCE
Confidence 45556678999999 999999999999999999999999999999999999999999999999999975 88888 699
Q ss_pred cEEEEEccccccC----------cCcc-----------------------------------cCcEEEEEcCCHHHHHHH
Q psy882 94 PIKVLIAAKLEFK----------EGYR-----------------------------------GGQKISVQYTSPQSAAYA 128 (253)
Q Consensus 94 ~i~v~~a~~~~~~----------~~~v-----------------------------------~~g~~fv~f~~~~~A~~A 128 (253)
.|.|.++.+.... .+|| .+|||||+|.+.++|.+|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 9999998762211 1111 178999999999999999
Q ss_pred HHhhCCCcCCCCCcEEEEecCCC
Q psy882 129 RDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 129 ~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
+.. +|..+ .|+.|.|.|+.+.
T Consensus 163 ~~~-~~~~~-~G~~i~v~~a~~k 183 (196)
T 1l3k_A 163 VIQ-KYHTV-NGHNCEVRKALSK 183 (196)
T ss_dssp HHC-SCCEE-TTEECEEEECC--
T ss_pred HHh-CCcEE-CCEEEEEEecCCh
Confidence 986 79998 9999999996653
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=1.1e-23 Score=165.99 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=110.8
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhCCcccC-CCCCcEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTG--ESKGVAYIRFSKTSEAAKAVEEMNGEFLP-NHSKPIK 96 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg--~~~g~~fV~f~~~~~A~~ai~~l~~~~~~-~~g~~i~ 96 (253)
++++|||+ ||+++++++|+++|++||+|.+|++++++.++ .++|||||+|.+.++|+.|++.|++..+. +.++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999 99999999999999999999999999999887 89999999999999999999999997763 2478899
Q ss_pred EEEccccccCc-----Ccc----------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcC
Q psy882 97 VLIAAKLEFKE-----GYR----------------------------------GGQKISVQYTSPQSAAYARDKFHGFAY 137 (253)
Q Consensus 97 v~~a~~~~~~~-----~~v----------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~ 137 (253)
+.++.+..... .|| .+|||||+|.+.++|.+|+..|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 98887632211 111 178999999999999999999999877
Q ss_pred CC--CCcEEEEecC
Q psy882 138 PP--GIPMVVVPDF 149 (253)
Q Consensus 138 ~~--g~~l~v~~~~ 149 (253)
.. |++|+|.|++
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 44 3999999963
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=7e-24 Score=166.16 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=107.8
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
++++|||+ ||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|+.|++. +..+ .|+.|.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 57899999 999999999999999999999999999999999999999999999999999984 5566 689999988
Q ss_pred ccccc-------------------------cCc-Ccc-------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC
Q psy882 100 AAKLE-------------------------FKE-GYR-------------GGQKISVQYTSPQSAAYARDKFHGFAYPPG 140 (253)
Q Consensus 100 a~~~~-------------------------~~~-~~v-------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g 140 (253)
+.+.. |.. |.| .+|||||+|.+.++|.+|+. ++|..+ .|
T Consensus 78 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-~g 155 (167)
T 2cjk_A 78 AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF-KD 155 (167)
T ss_dssp CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS-SS
T ss_pred ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe-CC
Confidence 87611 111 111 16899999999999999997 899999 99
Q ss_pred CcEEEEecCC
Q psy882 141 IPMVVVPDFS 150 (253)
Q Consensus 141 ~~l~v~~~~~ 150 (253)
++|+|.|+.+
T Consensus 156 ~~i~V~~a~p 165 (167)
T 2cjk_A 156 RKIEIKRAEP 165 (167)
T ss_dssp SCEEEEECCC
T ss_pred eEEEEeecCC
Confidence 9999999754
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=1.1e-22 Score=173.01 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=115.1
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
++.++|||+ ||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~ 170 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVH 170 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 456899999 999999999999999999999999999999999999999999999999999999999999 69999999
Q ss_pred EccccccCc------------------------------Ccc------------cCcEEEEEcCCHHHHHHHHHhhCCCc
Q psy882 99 IAAKLEFKE------------------------------GYR------------GGQKISVQYTSPQSAAYARDKFHGFA 136 (253)
Q Consensus 99 ~a~~~~~~~------------------------------~~v------------~~g~~fv~f~~~~~A~~A~~~l~g~~ 136 (253)
++.+..... |.| .+|||||+|.+.++|.+|+..|||..
T Consensus 171 ~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 171 WTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp ECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 998733211 111 17899999999999999999999999
Q ss_pred CCCCCcEEEEecCC
Q psy882 137 YPPGIPMVVVPDFS 150 (253)
Q Consensus 137 ~~~g~~l~v~~~~~ 150 (253)
+ .|++|+|.|+.+
T Consensus 251 ~-~g~~l~v~~a~~ 263 (284)
T 3smz_A 251 L-GGSHLRVSFCAP 263 (284)
T ss_dssp E-TTEECEEEECCS
T ss_pred c-CCeEEEEEEecC
Confidence 9 999999999654
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.89 E-value=1.6e-23 Score=165.49 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=110.3
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
.+..+.++|||+ ||+++++++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|..|++ |+|..+ .|+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEI 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE--TTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEe--CCeEE
Confidence 455678999999 9999999999999999998866 344555688999999999999999999995 999999 69999
Q ss_pred EEEEccccccCc------Ccc------------------------------cCcEEEEEcCCHHHHHHHHHhhCCCcCCC
Q psy882 96 KVLIAAKLEFKE------GYR------------------------------GGQKISVQYTSPQSAAYARDKFHGFAYPP 139 (253)
Q Consensus 96 ~v~~a~~~~~~~------~~v------------------------------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~ 139 (253)
.|.++.+..-.. .|| .+|||||+|.+.++|.+|+..|||..+ .
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~ 162 (175)
T 1fje_B 84 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI-D 162 (175)
T ss_dssp EEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE-T
T ss_pred EEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEE-C
Confidence 999988622211 111 279999999999999999999999999 9
Q ss_pred CCcEEEEecCC
Q psy882 140 GIPMVVVPDFS 150 (253)
Q Consensus 140 g~~l~v~~~~~ 150 (253)
|++|+|.|+.+
T Consensus 163 g~~i~v~~a~~ 173 (175)
T 1fje_B 163 GRSVSLYYTGE 173 (175)
T ss_dssp TEEEEEEECSS
T ss_pred CeEEEEEecCC
Confidence 99999999654
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.88 E-value=4.4e-22 Score=169.12 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHH----HhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLR----QGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~----~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
.+.+++++|||+ ||+++++++|+ ++|++||.|.+|++++ +|+++|||||+|.+.++|+.|++.|+|..+ .
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~ 78 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--Y 78 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--C
Confidence 345779999999 99999999966 8999999999998876 678999999999999999999999999999 6
Q ss_pred CCcEEEEEccc
Q psy882 92 SKPIKVLIAAK 102 (253)
Q Consensus 92 g~~i~v~~a~~ 102 (253)
|+.|+|.|+..
T Consensus 79 g~~l~v~~a~~ 89 (282)
T 3pgw_A 79 DKPMRIQYAKT 89 (282)
T ss_pred CcEEEEEEecc
Confidence 99999999866
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=6.4e-22 Score=163.52 Aligned_cols=128 Identities=22% Similarity=0.274 Sum_probs=111.8
Q ss_pred CCCCCCCCcEEEEE-cCC-CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGK-DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~-~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.....+++++|||+ ||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|+.|++.|+|..+ .|
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g 99 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HG 99 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SS
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CC
Confidence 44556788999999 999 99999999999999999999999986 89999999999999999999999999 69
Q ss_pred CcEEEEEccccc------------------------c---------------Cc----------------------C-cc
Q psy882 93 KPIKVLIAAKLE------------------------F---------------KE----------------------G-YR 110 (253)
Q Consensus 93 ~~i~v~~a~~~~------------------------~---------------~~----------------------~-~v 110 (253)
+.|.|.++.... + .. | .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 999999886420 0 00 2 11
Q ss_pred --------cCcEEEEEcCCHHHHHHHHHhhCCCcCCC-CCcEEEEecCC
Q psy882 111 --------GGQKISVQYTSPQSAAYARDKFHGFAYPP-GIPMVVVPDFS 150 (253)
Q Consensus 111 --------~~g~~fv~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~~~~~ 150 (253)
++|||||+|.+.++|.+|+..|||..+ . |++|+|.|+.+
T Consensus 180 ~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBS-SSSCBCEEEECSS
T ss_pred eEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCcc-CCCCeEEEEEecC
Confidence 289999999999999999999999999 7 99999999764
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.87 E-value=1.4e-21 Score=158.93 Aligned_cols=120 Identities=13% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCCcEEEEE-cC-CCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 20 PPHSRLFIL-CG-KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 20 ~~~~~lfv~-Lp-~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
+++++|||+ || +.+++++|+++|++||.|.+|++++++ +|||||+|.+.++|+.|++.|||..+ .|+.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEE
Confidence 568999999 99 899999999999999999999998774 89999999999999999999999999 6999999
Q ss_pred EEccccc--------------------------cC---------------cCccc-------------------------
Q psy882 98 LIAAKLE--------------------------FK---------------EGYRG------------------------- 111 (253)
Q Consensus 98 ~~a~~~~--------------------------~~---------------~~~v~------------------------- 111 (253)
.++..+. |. .+||.
T Consensus 75 ~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 75 CVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS 154 (205)
T ss_dssp EECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE
T ss_pred EEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE
Confidence 9975210 10 01121
Q ss_pred ----------CcEEEEEcCCHHHHHHHHHhhCCCcCCCCC----cEEEEe
Q psy882 112 ----------GQKISVQYTSPQSAAYARDKFHGFAYPPGI----PMVVVP 147 (253)
Q Consensus 112 ----------~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~~ 147 (253)
+|||||+|.+.++|.+|+..|||..+ .|+ ++.|+|
T Consensus 155 v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~-~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 155 VKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM-KNPNGPYPYTLKL 203 (205)
T ss_dssp EEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE-CCSSSSSCEECEE
T ss_pred EEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc-cCCCCCcceEEEe
Confidence 48999999999999999999999998 654 677766
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=156.84 Aligned_cols=121 Identities=23% Similarity=0.319 Sum_probs=107.0
Q ss_pred CcEEEEE-cCC-CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 22 HSRLFIL-CGK-DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 22 ~~~lfv~-Lp~-~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+++|||+ ||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|+.|++.|+|..+ .|+.|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEE
Confidence 5899999 999 99999999999999999999999886 89999999999999999999999999 699999999
Q ss_pred ccccc------------------------c--------------Cc-----------------------C-cc-------
Q psy882 100 AAKLE------------------------F--------------KE-----------------------G-YR------- 110 (253)
Q Consensus 100 a~~~~------------------------~--------------~~-----------------------~-~v------- 110 (253)
+.... + .. | .|
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 86420 0 00 2 11
Q ss_pred -cCcEEEEEcCCHHHHHHHHHhhCCCcCCC-CCcEEEEecCC
Q psy882 111 -GGQKISVQYTSPQSAAYARDKFHGFAYPP-GIPMVVVPDFS 150 (253)
Q Consensus 111 -~~g~~fv~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~~~~~ 150 (253)
++|||||+|.+.++|.+|+..|||..+ . |++|+|.|+.+
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVSFSKS 196 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCC-SSCCSCCEEEECC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCeEEEEeecc
Confidence 279999999999999999999999999 7 99999999764
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=4.8e-21 Score=154.03 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=123.0
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCC----C-------ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPF----G-------NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
..+++|||+ ||+++++++|+++|++| | .|.++.+ +.++|||||+|.+.++|+.|+ .|+|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999 99999999999999999 5 5666654 345899999999999999999 899999
Q ss_pred cCCCCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCccc
Q psy882 88 LPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAAL 167 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
+ .|+.|.|.++....-..+. ....- ....+....
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~-----------------------~~~~~---------------------~~~~~~~~~ 108 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGM-----------------------SENPS---------------------VYVPGVVST 108 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCS-----------------------SSCSS---------------------CCCTTSSCC
T ss_pred E--cCceEEEeCCCCCCCCCCC-----------------------cCCCc---------------------CCCCCCccC
Confidence 9 6999999998753211110 00000 000001111
Q ss_pred ccccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh---HHHHHHHHHhcCceecCeEEEE
Q psy882 168 SVVDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY---YILVEFSQTLHGAEMYGSRLKV 234 (253)
Q Consensus 168 ~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~---~~~~~Ai~~lnG~~i~G~~l~v 234 (253)
........++|.||+ ..++..|.. |..++. +..++...|||||.+ ....+|++.|||..|+|++|+|
T Consensus 109 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 109 VVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 223445789999999 666666777 777643 444566679998887 3339999999999999999999
Q ss_pred EecCCCCCc
Q psy882 235 MEADPPKGD 243 (253)
Q Consensus 235 ~~a~~p~~~ 243 (253)
+||+ |+..
T Consensus 189 ~~a~-~~~~ 196 (198)
T 2yh0_A 189 QRAS-VGAK 196 (198)
T ss_dssp EESC-CCCC
T ss_pred EECC-CCCC
Confidence 9999 5443
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.86 E-value=1.3e-21 Score=153.84 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=102.7
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCC----C-------ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPF----G-------NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
.++++|||+ ||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|+.|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999 99999999999999999 6 7777776544 899999999999999999 899999
Q ss_pred cCCCCCcEEEEEccccccC----cCcc-----------------------------------cCcEEEEEcCCHHHHHHH
Q psy882 88 LPNHSKPIKVLIAAKLEFK----EGYR-----------------------------------GGQKISVQYTSPQSAAYA 128 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~~~~~----~~~v-----------------------------------~~g~~fv~f~~~~~A~~A 128 (253)
+ .|+.|.|.++....-. ..+| ++|||||+|.+.++|.+|
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp E--TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred e--cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9 6999999998763211 1111 168999999999999999
Q ss_pred HHhhCCCcCCCCCcEEEEec
Q psy882 129 RDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 129 ~~~l~g~~~~~g~~l~v~~~ 148 (253)
+..|||..+ .|++|+|.|+
T Consensus 153 ~~~l~g~~~-~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQL-GDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEE-TTEECEEEEC
T ss_pred HHHcCCCEE-CCeEEEEEeC
Confidence 999999999 9999999995
No 19
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=138.91 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=78.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
...+++|||+ ||+++|+++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|++|++.|||..+ .|+.|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V 93 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKV 93 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3467899999 999999999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
.||.|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99976
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.84 E-value=8.2e-21 Score=162.05 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=104.3
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+.++|||+ ||+.+++++|+++|++|| .|.+|+++.++. |.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 47899999 999999999999999999 999999999874 88999999999999999999999999999 69999999
Q ss_pred EccccccC------------------------c----------Ccc--------------cCcEEEEEcCCHHHHHHHHH
Q psy882 99 IAAKLEFK------------------------E----------GYR--------------GGQKISVQYTSPQSAAYARD 130 (253)
Q Consensus 99 ~a~~~~~~------------------------~----------~~v--------------~~g~~fv~f~~~~~A~~A~~ 130 (253)
++.+..-. . |.| .+|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 98652110 0 111 1589999999999999999
Q ss_pred hhCCCcCCCCCcEEEEecCC
Q psy882 131 KFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 131 ~l~g~~~~~g~~l~v~~~~~ 150 (253)
.|||..+ .|++|.|.|+.+
T Consensus 272 ~l~g~~~-~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 QMNRSLL-GNREISVSLADK 290 (292)
T ss_dssp GGTTEEE-TTEEEEEEECCC
T ss_pred HhcCCEE-CCcEEEEEEecC
Confidence 9999999 999999999764
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.84 E-value=1.5e-20 Score=158.21 Aligned_cols=124 Identities=25% Similarity=0.391 Sum_probs=105.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|..|+..|+|..+ .|+.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 34567899999 9999999999999999999999998755 89999999999999999999999999 699999
Q ss_pred EEEcccc-------------------ccCc-Ccc------------cCcEEEEEcCCHHHHHHHHHhhCC-CcCCC---C
Q psy882 97 VLIAAKL-------------------EFKE-GYR------------GGQKISVQYTSPQSAAYARDKFHG-FAYPP---G 140 (253)
Q Consensus 97 v~~a~~~-------------------~~~~-~~v------------~~g~~fv~f~~~~~A~~A~~~l~g-~~~~~---g 140 (253)
|.++.+. .|.. |.| .+|||||+|.+.++|.+|+..||+ ..+ . +
T Consensus 90 v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~-~~~~~ 168 (261)
T 3sde_A 90 IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL-LTTTP 168 (261)
T ss_dssp EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE-SSSSC
T ss_pred eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE-ecCCC
Confidence 9998761 1111 111 278999999999999999999955 443 3 8
Q ss_pred CcEEEEecCC
Q psy882 141 IPMVVVPDFS 150 (253)
Q Consensus 141 ~~l~v~~~~~ 150 (253)
++|.|.|+..
T Consensus 169 r~i~v~~~~~ 178 (261)
T 3sde_A 169 RPVIVEPMEQ 178 (261)
T ss_dssp CBCEEEECCC
T ss_pred ceEEEeeccc
Confidence 9999999553
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=134.99 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=78.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.++.++|||+ ||+.+++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|+.|++.|||..+ .|+.|+|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V 80 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHA 80 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 3678999999 999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
.++..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 99874
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=131.77 Aligned_cols=84 Identities=19% Similarity=0.404 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc--eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc----cC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN--IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF----LP 89 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~--v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~----~~ 89 (253)
.......+|||+ ||+++|+++|+++|++||. +.+|++++|+.||.++|||||+|.+.++|++|++.|||.. +
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i- 82 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI- 82 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE-
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE-
Confidence 345678999999 9999999999999999995 6799999999999999999999999999999999999974 5
Q ss_pred CCCCcEEEEEccc
Q psy882 90 NHSKPIKVLIAAK 102 (253)
Q Consensus 90 ~~g~~i~v~~a~~ 102 (253)
+|++|.|.||.+
T Consensus 83 -~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 -DGKTIGVDFAKS 94 (95)
T ss_dssp -TTEEEEEEECCC
T ss_pred -CCEEEEEEEccC
Confidence 799999999874
No 24
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=129.57 Aligned_cols=86 Identities=37% Similarity=0.531 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+...++.++|||+ ||..+++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~ 97 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRP 97 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 4456678999999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.++
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998763
No 25
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=126.57 Aligned_cols=85 Identities=28% Similarity=0.471 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE--------IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~--------i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
.+...++.++|||+ ||.++++++|+++|++||.|.. |+++.++.+|.++|||||+|.+.++|+.|++.|+|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 45566788999999 9999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEEcc
Q psy882 86 EFLPNHSKPIKVLIAA 101 (253)
Q Consensus 86 ~~~~~~g~~i~v~~a~ 101 (253)
..+ .|+.|+|.+|+
T Consensus 86 ~~~--~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEF--SGNPIKVSFAT 99 (99)
T ss_dssp CBS--SSSBCEEEECC
T ss_pred CEe--CCcEEEEEecC
Confidence 999 69999999974
No 26
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=129.14 Aligned_cols=90 Identities=28% Similarity=0.390 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 12 RSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 12 ~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
..+.+....++++|||+ ||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|+.|++.|+|..+
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-- 90 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-- 90 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--
Confidence 33445556678999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcccc
Q psy882 91 HSKPIKVLIAAKL 103 (253)
Q Consensus 91 ~g~~i~v~~a~~~ 103 (253)
.|+.|.|.++.++
T Consensus 91 ~g~~l~V~~a~~~ 103 (106)
T 1p27_B 91 MGQPISVDWCFVR 103 (106)
T ss_dssp SSSBCEEEESEES
T ss_pred CCcEEEEEeecCC
Confidence 6999999998764
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=126.13 Aligned_cols=86 Identities=29% Similarity=0.442 Sum_probs=80.3
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
...+.++.++|||+ ||+.+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 85 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGR 85 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCE
Confidence 34456678999999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|+|.++.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=131.52 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=74.5
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-cccCCCCCcEEEE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG-EFLPNHSKPIKVL 98 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~-~~~~~~g~~i~v~ 98 (253)
+++|||+ ||+++||++|+++|++|| .|.+|+|++++.||.++|||||+|.+.++|++|++.+++ ..+ .|+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 5789999 999999999999999999 899999999999999999999999999999999998754 456 69999999
Q ss_pred Eccccc
Q psy882 99 IAAKLE 104 (253)
Q Consensus 99 ~a~~~~ 104 (253)
++.++.
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 998743
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=125.42 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=79.5
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.....++.++|||+ ||..+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 86 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGR 86 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCc
Confidence 44456678999999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEcc
Q psy882 94 PIKVLIAA 101 (253)
Q Consensus 94 ~i~v~~a~ 101 (253)
.|+|.+++
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=124.38 Aligned_cols=82 Identities=30% Similarity=0.575 Sum_probs=75.9
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.++.++|||+ ||.++++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRT 80 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 3567899999 999999999999999999999999999998999999999999999999999999999999 7999999
Q ss_pred EEccc
Q psy882 98 LIAAK 102 (253)
Q Consensus 98 ~~a~~ 102 (253)
.++.+
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 99875
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=124.83 Aligned_cols=84 Identities=37% Similarity=0.538 Sum_probs=79.4
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.+++++|||+ ||..+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+.|+|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 79 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRV 79 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEE
Confidence 3578999999 999999999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred EEccccc
Q psy882 98 LIAAKLE 104 (253)
Q Consensus 98 ~~a~~~~ 104 (253)
.++.++.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9998743
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=127.02 Aligned_cols=88 Identities=30% Similarity=0.444 Sum_probs=81.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
...+..+.++|||+ ||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 85 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHL 85 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCc
Confidence 34456678999999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=125.25 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=80.5
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
..+..+.++|||+ ||..+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++ |++..+ .|+.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~ 80 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKK 80 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeE
Confidence 4455678999999 99999999999999999999999999999999999999999999999999998 999998 6999
Q ss_pred EEEEEcccccc
Q psy882 95 IKVLIAAKLEF 105 (253)
Q Consensus 95 i~v~~a~~~~~ 105 (253)
|+|.++.++.-
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987543
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=125.20 Aligned_cols=87 Identities=29% Similarity=0.505 Sum_probs=80.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
......+.++|||+ ||..+++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 86 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KEN 86 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCE
Confidence 44556678999999 99999999999999999999999999998 999999999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=127.93 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=81.4
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+.+..+.++|||+ ||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 83 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGR 83 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTB
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCc
Confidence 34556678999999 999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dnm_A 84 ELRVQVARYG 93 (103)
T ss_dssp CCEEEECSSC
T ss_pred EEEEEECCcC
Confidence 9999999864
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=7.7e-19 Score=121.80 Aligned_cols=80 Identities=29% Similarity=0.517 Sum_probs=76.4
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
+.+|||+ ||.++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred ccc
Q psy882 101 AKL 103 (253)
Q Consensus 101 ~~~ 103 (253)
.++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 864
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.1e-19 Score=123.79 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=77.6
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
..++.++|||+ ||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 80 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 80 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 34678999999 999999999999999999999999999988999999999999999999999999999999 699999
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
|.++.
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=127.43 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=82.0
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+.+..+.++|||+ ||+.+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 85 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGK 85 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCe
Confidence 44556678999999 999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.++.
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.2e-19 Score=125.63 Aligned_cols=86 Identities=27% Similarity=0.442 Sum_probs=80.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
....+.++|||+ ||+.+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRML 80 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEE
Confidence 345678999999 999999999999999999999999999998999999999999999999999999999999 69999
Q ss_pred EEEEccccc
Q psy882 96 KVLIAAKLE 104 (253)
Q Consensus 96 ~v~~a~~~~ 104 (253)
+|.++.++.
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 999998754
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.6e-19 Score=130.14 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=77.6
Q ss_pred CCCCcEEEEE-cCC------CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 19 EPPHSRLFIL-CGK------DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~------~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
+..+++|||+ ||. .+++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|+.|++.|||..+ .
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~ 80 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--D 80 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--C
Confidence 3457899999 999 999999999999999999999999999999999999999999999999999999999 6
Q ss_pred C-CcEEEEEccc
Q psy882 92 S-KPIKVLIAAK 102 (253)
Q Consensus 92 g-~~i~v~~a~~ 102 (253)
| +.|+|.++.+
T Consensus 81 g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHRLFLYTMKD 92 (100)
T ss_dssp SSCBCEEEESHH
T ss_pred CCeEEEEEECch
Confidence 7 9999999976
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=7.6e-19 Score=125.45 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=78.1
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
|+++|||+ ||..+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 57899999 999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred ccccc
Q psy882 100 AAKLE 104 (253)
Q Consensus 100 a~~~~ 104 (253)
+.+..
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98743
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3e-18 Score=124.29 Aligned_cols=87 Identities=28% Similarity=0.439 Sum_probs=79.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC--
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS-- 92 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g-- 92 (253)
....++.++|||+ ||..+++++|+++|++||.|..|+|+.++ +|.++|||||+|.+.++|+.|++.|++..+ .|
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~ 85 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGA 85 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCC
Confidence 3345678999999 99999999999999999999999999998 899999999999999999999999999998 45
Q ss_pred -CcEEEEEcccccc
Q psy882 93 -KPIKVLIAAKLEF 105 (253)
Q Consensus 93 -~~i~v~~a~~~~~ 105 (253)
+.|+|.++.++.-
T Consensus 86 ~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 86 SSSLVVKFADTDKE 99 (105)
T ss_dssp SSCCEEEESCSSCC
T ss_pred CccEEEEECccCcc
Confidence 9999999987543
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.5e-18 Score=128.01 Aligned_cols=87 Identities=31% Similarity=0.610 Sum_probs=81.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
...+..+.++|||+ ||+.+++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 85 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGR 85 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCE
Confidence 45556688999999 999999999999999999999999999998999999999999999999999999999999 699
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|+|.++.+.
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999999874
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=7.6e-19 Score=129.63 Aligned_cols=88 Identities=27% Similarity=0.452 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+...++.++|||+ ||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 95 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMK 95 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTE
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCE
Confidence 34456678999999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.++.
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999998743
No 45
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=126.83 Aligned_cols=88 Identities=26% Similarity=0.374 Sum_probs=81.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC------Ccc
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN------GEF 87 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~------~~~ 87 (253)
.+.+..+.++|||+ ||+.+++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|+.|++.|+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34556678999999 99999999999999999999999999999999999999999999999999999999 888
Q ss_pred cCCCCCcEEEEEccccc
Q psy882 88 LPNHSKPIKVLIAAKLE 104 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~~~ 104 (253)
+ .|+.|+|.++.++.
T Consensus 88 ~--~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 88 L--DGRQLKVDLAVTRD 102 (111)
T ss_dssp S--SSCEEEEECCCCCC
T ss_pred E--cCEEEEEEECCCCc
Confidence 8 79999999998754
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.9e-19 Score=128.79 Aligned_cols=91 Identities=25% Similarity=0.338 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 12 RSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 12 ~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
....+....++++|||+ ||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|+.|++.|+|..+
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 93 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-- 93 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--
Confidence 33455666788999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccccc
Q psy882 91 HSKPIKVLIAAKLE 104 (253)
Q Consensus 91 ~g~~i~v~~a~~~~ 104 (253)
.|+.|+|.++.++.
T Consensus 94 ~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 94 MGQTIQVDWCFVKG 107 (110)
T ss_dssp TTEECEEEESEESS
T ss_pred CCcEEEEEEcccCC
Confidence 69999999997643
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=125.93 Aligned_cols=88 Identities=19% Similarity=0.380 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-CCcccCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKD-RNTGESKGVAYIRFSKTSEAAKAVEEM-NGEFLPNH 91 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~-~~tg~~~g~~fV~f~~~~~A~~ai~~l-~~~~~~~~ 91 (253)
.+...++.++|||+ ||+.+++++|+++|++||.|..|+++.+ +.++.++|||||+|.+.++|+.|++.| ++..+ .
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~ 85 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--Y 85 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--S
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--C
Confidence 45566788999999 9999999999999999999999999999 789999999999999999999999999 99999 6
Q ss_pred CCcEEEEEccccc
Q psy882 92 SKPIKVLIAAKLE 104 (253)
Q Consensus 92 g~~i~v~~a~~~~ 104 (253)
|+.|+|.++.++.
T Consensus 86 g~~l~v~~a~~~~ 98 (107)
T 2cph_A 86 GRRLVLEWADSEV 98 (107)
T ss_dssp SCBCEEEECCCCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998754
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.3e-18 Score=128.86 Aligned_cols=85 Identities=29% Similarity=0.484 Sum_probs=78.9
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+.+.++.++|||+ ||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 110 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTK 110 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCE
Confidence 34456678999999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEcc
Q psy882 94 PIKVLIAA 101 (253)
Q Consensus 94 ~i~v~~a~ 101 (253)
.|+|.+++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999874
No 49
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.1e-18 Score=120.77 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+.+..+.++|||+ ||+.+++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|++|++ +++..+ .|+.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~ 81 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRV 81 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEE
Confidence 4456678999999 99999999999999999999999999999999999999999999999999996 578887 7999
Q ss_pred EEEEEc
Q psy882 95 IKVLIA 100 (253)
Q Consensus 95 i~v~~a 100 (253)
|.|.+|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999886
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=125.68 Aligned_cols=88 Identities=26% Similarity=0.472 Sum_probs=81.5
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||+.+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 83 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRT 83 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcE
Confidence 3345678999999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEcccccc
Q psy882 95 IKVLIAAKLEF 105 (253)
Q Consensus 95 i~v~~a~~~~~ 105 (253)
|+|.++.+..-
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987543
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.6e-19 Score=125.52 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceE-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc-
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQ-EIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP- 94 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~-~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~- 94 (253)
...++++|||+ ||+++++++|+++|++||.|. +|++++++.++.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~ 82 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATP 82 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCc
Confidence 45678999999 999999999999999999999 999999999999999999999999999999999999999 6888
Q ss_pred ---EEEEEcccc
Q psy882 95 ---IKVLIAAKL 103 (253)
Q Consensus 95 ---i~v~~a~~~ 103 (253)
|+|.|+.+.
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999999864
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=123.36 Aligned_cols=87 Identities=33% Similarity=0.592 Sum_probs=80.2
Q ss_pred CCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 14 REYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 14 ~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.+.....+.++|||+ ||+.+++++|+++|++||.|..|+++.+ ++.++|||||+|.+.++|+.|++.|++..+ .|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g 82 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 82 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CC
Confidence 344556688999999 9999999999999999999999999998 899999999999999999999999999999 79
Q ss_pred CcEEEEEccccc
Q psy882 93 KPIKVLIAAKLE 104 (253)
Q Consensus 93 ~~i~v~~a~~~~ 104 (253)
+.|.|.++.++.
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2d9p_A 83 KPLYVALAQRKE 94 (103)
T ss_dssp SBCEEEECSSCC
T ss_pred cEEEEEEecccc
Confidence 999999998754
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.5e-19 Score=125.75 Aligned_cols=79 Identities=27% Similarity=0.370 Sum_probs=71.4
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCC--ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFG--NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G--~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.+|||+ ||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|+|..+ .|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 479999 999999999999999999 999999999999999999999999999999999999999999 799999999
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=125.14 Aligned_cols=84 Identities=36% Similarity=0.573 Sum_probs=79.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEI-RCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i-~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
++++++|||+ ||..+++++|+++|++||.|.++ ++++++.++.++|||||+|.+.++|+.|++.|++..+ .|+.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 79 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPIT 79 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 3578999999 99999999999999999999999 9999988999999999999999999999999999999 799999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++.+..
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 99998754
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=124.96 Aligned_cols=87 Identities=32% Similarity=0.493 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 83 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQ 83 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 3445678999999 999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.+..
T Consensus 84 l~v~~a~~~~ 93 (102)
T 1x5s_A 84 IRVDQAGKSS 93 (102)
T ss_dssp CEEEEEECCC
T ss_pred EEEEECCCCC
Confidence 9999998743
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.9e-18 Score=129.50 Aligned_cols=91 Identities=27% Similarity=0.370 Sum_probs=83.2
Q ss_pred CCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 13 ~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
.+.+....++++|||+ ||+.+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|+.|++.|+|..+ .
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~ 90 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--M 90 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--C
Confidence 3445667778999999 999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCcEEEEEcccccc
Q psy882 92 SKPIKVLIAAKLEF 105 (253)
Q Consensus 92 g~~i~v~~a~~~~~ 105 (253)
|+.|.|.++.+..-
T Consensus 91 g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 91 GQPISVDWCFVRGP 104 (126)
T ss_dssp SSBCEEEESEESSS
T ss_pred CeEEEEEEecCCCC
Confidence 99999999987443
No 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=127.92 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+....+.++|||+ ||..+++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 79 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRA 79 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSC
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcE
Confidence 3444567899999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.++
T Consensus 80 l~v~~a~~~ 88 (104)
T 1p1t_A 80 LRVDNAASE 88 (104)
T ss_dssp BEEEETTCT
T ss_pred EEEEeCCCc
Confidence 999999874
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.6e-18 Score=123.50 Aligned_cols=86 Identities=21% Similarity=0.387 Sum_probs=79.4
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+....+.++|||+ ||+.+++++|+++|++|| |.+|++++++.++.++|||||+|.+.++|+.|+ .|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~ 83 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDR 83 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTE
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCe
Confidence 44556678999999 999999999999999997 999999999999999999999999999999999 8999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999998743
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=2e-18 Score=130.06 Aligned_cols=86 Identities=29% Similarity=0.440 Sum_probs=80.4
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+.+.++.++|||+ ||+.+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~ 117 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRR 117 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 4455678999999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.++
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999998764
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=122.81 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+...++.++|||+ ||+.+++++|+++|++||.|.+|+++.++. |.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 85 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGR 85 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCC
Confidence 34556678999999 999999999999999999999999999985 99999999999999999999999999999 699
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|+|.++..
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999863
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.2e-18 Score=125.18 Aligned_cols=90 Identities=30% Similarity=0.456 Sum_probs=81.4
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCccc-CCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL-PNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~-~~~g 92 (253)
.+...++.++|||+ ||..+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|++.|++..+ .+.|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 34566788999999 999999999999999999999999999999999999999999999999999999999875 2248
Q ss_pred CcEEEEEccccc
Q psy882 93 KPIKVLIAAKLE 104 (253)
Q Consensus 93 ~~i~v~~a~~~~ 104 (253)
+.|+|.++.++.
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998754
No 62
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-19 Score=122.81 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.+++++|||+ ||+.+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~ 79 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQ 79 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEee
Confidence 3578999999 999999999999999999999999999999999999999999999999999999999999 6999888
Q ss_pred EEcc
Q psy882 98 LIAA 101 (253)
Q Consensus 98 ~~a~ 101 (253)
.++.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7764
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=126.22 Aligned_cols=88 Identities=27% Similarity=0.414 Sum_probs=81.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQ--------EIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~--------~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
.+.+..+.++|||+ ||..+++++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|+.|++.|++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 45567788999999 999999999999999999998 699999998999999999999999999999999999
Q ss_pred cccCCCCCcEEEEEccccc
Q psy882 86 EFLPNHSKPIKVLIAAKLE 104 (253)
Q Consensus 86 ~~~~~~g~~i~v~~a~~~~ 104 (253)
..+ .|+.|+|.++.+..
T Consensus 88 ~~~--~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 88 KDF--QGSKLKVSLARKKP 104 (113)
T ss_dssp CEE--TTEECEEECSSCCC
T ss_pred Ccc--CCCEEEEEECCCCC
Confidence 999 69999999998743
No 64
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=4.2e-18 Score=123.90 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+....+.++|||+ ||+.+++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|++|++.|+|..+ .|+.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 99 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRP 99 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 4455678999999 99999999999999999999999999998 999999999999999999999999999999 7999
Q ss_pred EEEEEcc
Q psy882 95 IKVLIAA 101 (253)
Q Consensus 95 i~v~~a~ 101 (253)
|+|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=123.97 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=78.0
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN---TGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~---tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+++.++|||+ ||+++++++|+++|++||.|..|+++.++. |+.++|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 79 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHK 79 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeE
Confidence 3578999999 999999999999999999999999999886 668999999999999999999999999999 6999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|.|.++.+..
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999998743
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=125.21 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++|+++|+++|++||+|.+|++++++. |.++|||||+|.+.++|+.|+. +++..+ .|+.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~ 82 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLL 82 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEE
Confidence 34567899999 999999999999999999999999999986 9999999999999999999998 899998 799999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.++..
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 999765
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=123.24 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
+....+|+++|||+ ||+.+++++|+++|++||.|.+++++++ +|+|||+|.+.++|..|++.|++..+...|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 44566789999999 9999999999999999999999999865 8999999999999999999999876322699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
+|+|.++..++
T Consensus 88 ~i~V~~S~~k~ 98 (100)
T 3r27_A 88 PAFVNYSTSQK 98 (100)
T ss_dssp EEEEEECSCSC
T ss_pred EEEEEeccccc
Confidence 99999998754
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=129.19 Aligned_cols=88 Identities=30% Similarity=0.438 Sum_probs=81.4
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+..+.++|||+ ||.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|++|++.|+|..+ .|+.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 44567999999 999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred EEEccccccCc
Q psy882 97 VLIAAKLEFKE 107 (253)
Q Consensus 97 v~~a~~~~~~~ 107 (253)
|.++.+..-..
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998855443
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=126.23 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=79.4
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+....+.++|||+ ||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.+++ .+ .|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~ 86 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGR 86 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCE
Confidence 45566788999999 999999999999999999999999999999999999999999999999999999998 66 699
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|+|.++.+
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 999999965
No 70
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.8e-18 Score=126.73 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=73.0
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
.+++|||+ ||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 35789999 99999999999999999999999999995 45899999999999999999999999999 799999999
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+.+.
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8764
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=123.48 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=79.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT-GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~t-g~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.+.+.++.++|||+ ||+.+++++|+++|++|| |.+|+|++++.+ |.++|||||+|.+.++|++|+ .|++..+ .|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g 83 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GN 83 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TT
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CC
Confidence 44556678999999 999999999999999999 999999999988 999999999999999999999 8999999 79
Q ss_pred CcEEEEEccccc
Q psy882 93 KPIKVLIAAKLE 104 (253)
Q Consensus 93 ~~i~v~~a~~~~ 104 (253)
+.|+|.++.++.
T Consensus 84 ~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 KRIRVDVADQAQ 95 (104)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEEccCCC
Confidence 999999998754
No 72
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=123.97 Aligned_cols=85 Identities=28% Similarity=0.444 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcC-CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc-cCCCCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSP-FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF-LPNHSK 93 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~-~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~-~~~~g~ 93 (253)
.+.++.++|||+ ||+++++++|+++|++ ||.|.+|+|+.++ +|.++|||||+|.+.++|+.|++.|++.. + .|+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~ 80 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSK 80 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCE
Confidence 345678999999 9999999999999999 9999999999998 99999999999999999999999999999 8 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|.|.++.+..
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 99999997643
No 73
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-19 Score=132.87 Aligned_cols=90 Identities=22% Similarity=0.380 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc-
Q psy882 11 DRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE--IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE- 86 (253)
Q Consensus 11 ~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~--i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~- 86 (253)
+....+....+.++|||+ ||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|..|++.|+|.
T Consensus 12 ~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~ 90 (131)
T 2m2b_A 12 SQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALH 90 (131)
T ss_dssp CCCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCC
Confidence 334455566788999999 9999999999999999999976 99999999999999999999999 999999999999
Q ss_pred ---ccCCCCCcEEEEEcccc
Q psy882 87 ---FLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 87 ---~~~~~g~~i~v~~a~~~ 103 (253)
.+ .|+.|+|.++.+.
T Consensus 91 ~~~~~--~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 91 PPLTI--DGKTINVEFAKGS 108 (131)
T ss_dssp CSCCG--GGCCCCCEECCCS
T ss_pred CCccC--CCEEEEEEECCCC
Confidence 88 6999999999874
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=119.98 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=79.5
Q ss_pred CCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 14 REYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 14 ~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
..+....+.++|||+ ||+.+++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|+.|++.|++..+ .|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 82 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EG 82 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CC
Confidence 345566788999999 999999999999999999999999999863 3899999999999999999999999999 79
Q ss_pred CcEEEEEcccccc
Q psy882 93 KPIKVLIAAKLEF 105 (253)
Q Consensus 93 ~~i~v~~a~~~~~ 105 (253)
+.|+|.++.++..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 RKIEVNNATARVM 95 (103)
T ss_dssp EECEEEECCSSCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999987543
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=120.03 Aligned_cols=82 Identities=28% Similarity=0.421 Sum_probs=76.5
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGE-SKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~-~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
...++|||+ ||.++++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|+.|++.|+|..+ .|+.|+|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEE
Confidence 457899999 999999999999999999999999999987766 899999999999999999999999999 7999999
Q ss_pred EEcccc
Q psy882 98 LIAAKL 103 (253)
Q Consensus 98 ~~a~~~ 103 (253)
.++.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998764
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=5.6e-18 Score=119.80 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...++.++|||+ ||..+++++|+++|++||.|.+|+++++ +|.++|||||+|.+.++|+.|++.|++..+ .|+.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l 78 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREI 78 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEE
Confidence 345678999999 9999999999999999999999999985 889999999999999999999999999999 79999
Q ss_pred EEEEcccc
Q psy882 96 KVLIAAKL 103 (253)
Q Consensus 96 ~v~~a~~~ 103 (253)
+|.++.+.
T Consensus 79 ~v~~a~~~ 86 (92)
T 2dgv_A 79 DVRIDRNA 86 (92)
T ss_dssp CCEECSCC
T ss_pred EEEEcCCC
Confidence 99999864
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=122.75 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...+..++|||+ ||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|++..+ .|+.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l 87 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKV 87 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 345567999999 999999999999999999999998999988999999999999999999999999999999 69999
Q ss_pred EEEEcccc
Q psy882 96 KVLIAAKL 103 (253)
Q Consensus 96 ~v~~a~~~ 103 (253)
+|.++...
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998753
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=125.21 Aligned_cols=84 Identities=38% Similarity=0.581 Sum_probs=78.5
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..+.++|||+ ||.++++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3457899999 99999999999999999999999999998 999999999999999999999999999999 6999999
Q ss_pred EEcccccc
Q psy882 98 LIAAKLEF 105 (253)
Q Consensus 98 ~~a~~~~~ 105 (253)
.++.+...
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987543
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=132.32 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=76.3
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCC--ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFG--NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G--~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..++|||+ ||+++++++|+++|++|| .|.+|+|+.|+.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeEE
Confidence 45799999 999999999999999999 999999999999999999999999999999999999999999 7999999
Q ss_pred EEcccc
Q psy882 98 LIAAKL 103 (253)
Q Consensus 98 ~~a~~~ 103 (253)
.++.+.
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 999763
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=2.1e-18 Score=122.74 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...++.++|||+ ||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+ .|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l 87 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKV 87 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEE
Confidence 345567999999 999999999999999999999999999998999999999999999999999999999999 79999
Q ss_pred EEEEccc
Q psy882 96 KVLIAAK 102 (253)
Q Consensus 96 ~v~~a~~ 102 (253)
+|.++.+
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9998763
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=122.26 Aligned_cols=85 Identities=24% Similarity=0.437 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.....++.++|||+ ||..+++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 84 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDR 84 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCC
Confidence 34556678999999 99999999999999999999999999998 699999999999999999999999999999 699
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|.|.++..
T Consensus 85 ~l~v~~a~~ 93 (114)
T 2do0_A 85 PMHVKMDER 93 (114)
T ss_dssp ECEEEECSC
T ss_pred EEEEEEccc
Confidence 999999875
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-17 Score=120.89 Aligned_cols=86 Identities=23% Similarity=0.508 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC----
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN---- 90 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~---- 90 (253)
.....+.++|||+ ||+.+++++|+++|++||.|.+|+++.++ ++.++|||||+|.+.++|+.|++.|+|..+.+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4455678999999 99999999999999999999999999998 99999999999999999999999999998832
Q ss_pred --CCCcEEEEEccc
Q psy882 91 --HSKPIKVLIAAK 102 (253)
Q Consensus 91 --~g~~i~v~~a~~ 102 (253)
.+++|.|.|+.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 378899999875
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=6.1e-18 Score=118.78 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=75.9
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||+++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|+.|+ .|+|..+ .|+.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 35799999 9999999999999999999999999999999999999999999999999999 8999999 799999999
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8763
No 84
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=120.72 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
...+..+.++|||+ ||+.+++++|+++|++||.|.+|++++++. .++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 83 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGK 83 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCC
Confidence 34556778999999 999999999999999999999999999853 3689999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999998743
No 85
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=123.74 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--cccCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG--EFLPNH 91 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~--~~~~~~ 91 (253)
+....+++++|||+ ||+.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|+.|++.|++ ..+ .
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~ 95 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--R 95 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--T
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--C
Confidence 44556788999999 9999999999999999999999999987 89999999999999999998875 466 6
Q ss_pred CCcEEEEEccccccCc
Q psy882 92 SKPIKVLIAAKLEFKE 107 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~ 107 (253)
|++|+|.++.++..+.
T Consensus 96 Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 96 GQPIYIQFSNHKELKT 111 (119)
T ss_dssp TBCCEEEECSSSSCCC
T ss_pred CeEEEEEEccCCCCCc
Confidence 9999999998866543
No 86
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=119.75 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=78.8
Q ss_pred CCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 14 REYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 14 ~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.......+.++|||+ ||+.+++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|+.|++ ++..+ .|
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g 82 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DG 82 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TT
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CC
Confidence 345566778999999 99999999999999999999999999999999999999999999999999998 46777 79
Q ss_pred CcEEEEEccccc
Q psy882 93 KPIKVLIAAKLE 104 (253)
Q Consensus 93 ~~i~v~~a~~~~ 104 (253)
+.|.|.++.++.
T Consensus 83 ~~l~v~~a~~~~ 94 (103)
T 2cqg_A 83 RWCDCKLPNSKQ 94 (103)
T ss_dssp EEEEEECCCTTC
T ss_pred eEEEEEecCCCC
Confidence 999999998743
No 87
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=120.16 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=75.1
Q ss_pred CCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 14 REYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 14 ~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.++...+++++|||+ ||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++.|++..+...|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 345667789999999 9999999999999999999999998865 899999999999999999988765421179
Q ss_pred CcEEEEEccccccC
Q psy882 93 KPIKVLIAAKLEFK 106 (253)
Q Consensus 93 ~~i~v~~a~~~~~~ 106 (253)
+.|+|.|+..+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 QQAFFNYSTSKRIT 94 (104)
T ss_dssp SBCEEEECSSSSCC
T ss_pred EEEEEEEccCcccc
Confidence 99999999875543
No 88
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.2e-17 Score=129.88 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
....+.++|||+ ||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|++..+ .|+.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 111 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRII 111 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEE
Confidence 334578999999 999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred EEEEccccc
Q psy882 96 KVLIAAKLE 104 (253)
Q Consensus 96 ~v~~a~~~~ 104 (253)
+|.|+.+..
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998743
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=123.73 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=80.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
...+.++.++|||+ ||+.+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|+.|++. ++..+ .|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~ 85 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGR 85 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCE
Confidence 44556778999999 999999999999999999999999999999999999999999999999999998 99998 799
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|.|.++.++.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 99999998743
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=118.71 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=74.5
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CcccCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN--GEFLPNH 91 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~--~~~~~~~ 91 (253)
+....+++++|||+ ||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|+.|++.|+ +..+ .
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~ 79 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--R 79 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--T
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--C
Confidence 45556789999999 9999999999999999999999998876 8999999999999999999774 5667 6
Q ss_pred CCcEEEEEccccccC
Q psy882 92 SKPIKVLIAAKLEFK 106 (253)
Q Consensus 92 g~~i~v~~a~~~~~~ 106 (253)
|++|+|.|+..+..+
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 999999999876544
No 91
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=126.04 Aligned_cols=79 Identities=28% Similarity=0.516 Sum_probs=75.6
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||..+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|+ .|++..+ .|+.|+|.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEEe
Confidence 45899999 9999999999999999999999999999999999999999999999999999 8999999 699999999
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
+.+
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 92
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.3e-18 Score=116.40 Aligned_cols=74 Identities=19% Similarity=0.392 Sum_probs=70.8
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
+|||+ ||+++++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|++|++ +++..+ .|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 58999 99999999999999999999999999999899999999999999999999998 899999 6999999886
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=8.3e-18 Score=122.98 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.+...+.++|||+ ||.++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|+.|++.+ +..+ .|+.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~ 95 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKT 95 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEE
Confidence 3445578999999 9999999999999999999999999999999999999999999999999999975 5777 6999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|.|.++.+..
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998643
No 94
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.8e-18 Score=122.83 Aligned_cols=87 Identities=24% Similarity=0.425 Sum_probs=77.9
Q ss_pred CCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 13 ~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
+.......+.++|||+ ||.++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|+.|++.|+|..+ .
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~ 95 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--E 95 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--T
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--C
Confidence 3345566678999999 99999999999999999999999999985 45899999999999999999999999999 7
Q ss_pred CCcEEEEEcccc
Q psy882 92 SKPIKVLIAAKL 103 (253)
Q Consensus 92 g~~i~v~~a~~~ 103 (253)
|+.|+|.++.++
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999999764
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=123.40 Aligned_cols=85 Identities=25% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDR-NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~-~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.+....+.++|||+ ||.++++++|+++|++|| |.+|++++++ .+|+++|||||+|.+.++|+.|+ .|+|..+ .|
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g 87 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GN 87 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TT
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CC
Confidence 34455678999999 999999999999999999 9999999998 68999999999999999999999 8999999 79
Q ss_pred CcEEEEEcccc
Q psy882 93 KPIKVLIAAKL 103 (253)
Q Consensus 93 ~~i~v~~a~~~ 103 (253)
+.|+|.++.+.
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998763
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.3e-17 Score=130.78 Aligned_cols=87 Identities=26% Similarity=0.368 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+....++++|||+ ||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~ 142 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQ 142 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCE
Confidence 34456678899999 999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|.|.|+.+.
T Consensus 143 ~l~V~~a~~~ 152 (165)
T 1rk8_A 143 TIQVDWCFVK 152 (165)
T ss_dssp ECEEEESEEC
T ss_pred EEEEEEecCC
Confidence 9999999764
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=126.61 Aligned_cols=83 Identities=28% Similarity=0.493 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||..+++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|++|++.|+|..+ .|+.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 134 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRT 134 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 3445678999999 999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEEEEc
Q psy882 95 IKVLIA 100 (253)
Q Consensus 95 i~v~~a 100 (253)
|+|.+|
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999885
No 98
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=116.39 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=71.4
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
++|||+ ||+++++++|+++|++||+|.++.+++++.+|.++|||||+|.+.++|+.|++.++ ..+ .|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 579999 99999999999999999999999999999899999999999999999999999988 777 6999999987
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=119.23 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.0
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHH----HhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLR----QGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~----~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
...+.++|||+ ||+.+++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|+.|++.|||..+ .|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~g 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GS 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CC
Confidence 34567899999 99999999999 99999999999999999755 89999999999999999999999999 79
Q ss_pred CcEEEEEcccc
Q psy882 93 KPIKVLIAAKL 103 (253)
Q Consensus 93 ~~i~v~~a~~~ 103 (253)
+.|+|.++.+.
T Consensus 80 r~l~V~~a~~~ 90 (96)
T 2dgx_A 80 KKILVSLATGA 90 (96)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEEcCCC
Confidence 99999999764
No 100
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-18 Score=122.66 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=72.2
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--cccCCCCCcE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG--EFLPNHSKPI 95 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~--~~~~~~g~~i 95 (253)
.++.++|||+ ||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|+.|++.|++ ..+ .|++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 4578999999 9999999999999999999999999976 89999999999999999998875 567 69999
Q ss_pred EEEEccccccC
Q psy882 96 KVLIAAKLEFK 106 (253)
Q Consensus 96 ~v~~a~~~~~~ 106 (253)
+|.++.++...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999875543
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=2.6e-17 Score=123.02 Aligned_cols=83 Identities=24% Similarity=0.461 Sum_probs=78.0
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...++++|||+ ||..+++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34567999999 99999999999999999999999999998 999999999999999999999999999999 699999
Q ss_pred EEEcccc
Q psy882 97 VLIAAKL 103 (253)
Q Consensus 97 v~~a~~~ 103 (253)
|.++.+.
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9999874
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=121.13 Aligned_cols=85 Identities=13% Similarity=0.326 Sum_probs=77.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHH---HhhcCCCceEEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLR---QGFSPFGNIQEIRCVKDRNTG---ESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~---~~f~~~G~v~~i~i~~~~~tg---~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
...+.++|||+ ||+.+++++|+ ++|++||.|.+|.+++++.++ .++|||||+|.+.++|+.|++.|||..+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-- 88 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-- 88 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--
Confidence 44567899999 99999999999 999999999999999998754 4569999999999999999999999999
Q ss_pred CCCcEEEEEccccc
Q psy882 91 HSKPIKVLIAAKLE 104 (253)
Q Consensus 91 ~g~~i~v~~a~~~~ 104 (253)
.|+.|+|.++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 79999999998754
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=118.97 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE-IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~-i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
..+..+.++|||+ ||+.+++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.+.++|+.|++. ++..+ .|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr 84 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHR 84 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCc
Confidence 3444568999999 9999999999999999999987 888888 6999999999999999999999997 89888 699
Q ss_pred cEEEEEcccccc
Q psy882 94 PIKVLIAAKLEF 105 (253)
Q Consensus 94 ~i~v~~a~~~~~ 105 (253)
.|.|.++..+++
T Consensus 85 ~i~v~~~~~~~~ 96 (104)
T 1wg5_A 85 YIEIFKSSRAEV 96 (104)
T ss_dssp CCEEEEECTTTS
T ss_pred EEEEEECCHHHH
Confidence 999999887554
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.7e-17 Score=129.14 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
....+.++|||+ ||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|+.|++.|+|..+ .|+.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 142 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGREL 142 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEE
Confidence 344568999999 999999999999999999999999999999999999999999999999999999999998 69999
Q ss_pred EEEEcccc
Q psy882 96 KVLIAAKL 103 (253)
Q Consensus 96 ~v~~a~~~ 103 (253)
+|.++.+.
T Consensus 143 ~v~~a~~~ 150 (158)
T 2kn4_A 143 RVQMARYG 150 (158)
T ss_dssp EEEEECCS
T ss_pred EEEECCCC
Confidence 99999864
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=122.05 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCc-eEEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhC--CcccCCCCC
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGN-IQEIRCV-KDRNTGESKGVAYIRFSKTSEAAKAVEEMN--GEFLPNHSK 93 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~-v~~i~i~-~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~--~~~~~~~g~ 93 (253)
+++.++|||+ ||+.+++++|+++|++||. |.+|.++ .++.+|.++|||||+|.+.++|+.|++.|+ +..+ .|+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 4568999999 9999999999999999998 9999998 888899999999999999999999999996 4777 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.|+.++.
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 99999998743
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=121.29 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEE-cCCCC------CHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 17 NDEPPHSRLFIL-CGKDV------TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~------te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
.+...+++|||+ ||+.+ ++++|+++|++||.|.+|.++ +.+|.++|||||+|.+.++|+.|++.|+|..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~- 86 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL- 86 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc-
Confidence 345567999999 99999 789999999999999999988 35899999999999999999999999999999
Q ss_pred CCCC-cEEEEEccc
Q psy882 90 NHSK-PIKVLIAAK 102 (253)
Q Consensus 90 ~~g~-~i~v~~a~~ 102 (253)
.|+ .|+|.++..
T Consensus 87 -~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 -DKQHTFRVNLFTD 99 (105)
T ss_dssp -STTCEEEEECSCC
T ss_pred -CCCceEEEEEcch
Confidence 688 999999875
No 107
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-18 Score=124.90 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=77.4
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..+.++|||+ ||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|+.|++. ++..+ .|+.|+|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 3456999999 999999999999999999999999999999999999999999999999999987 89888 7999999
Q ss_pred EEccccc
Q psy882 98 LIAAKLE 104 (253)
Q Consensus 98 ~~a~~~~ 104 (253)
.++.++.
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9998753
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=3.6e-18 Score=120.35 Aligned_cols=78 Identities=19% Similarity=0.408 Sum_probs=72.9
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
++|||+ ||.++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.+ |..|+..|+|..+ .|+.|+|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 689999 9999999999999999999999999999999999999999999999 9999999999999 69999999997
Q ss_pred cc
Q psy882 102 KL 103 (253)
Q Consensus 102 ~~ 103 (253)
+.
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 63
No 109
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.4e-17 Score=126.78 Aligned_cols=97 Identities=25% Similarity=0.416 Sum_probs=87.5
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.... .....+.++|||+ ||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|..|+
T Consensus 68 g~~i~v~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 68 NNIVKINWAFQSQ-QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp TEECEEEECCCCC-CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCeeEEEEcCCCC-CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 5667777775543 3455678999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEcc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~ 101 (253)
+.|+|..+ .|+.|+|.|+.
T Consensus 147 ~~l~g~~~--~g~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDL--NGRPLRINWAA 165 (166)
T ss_dssp HHHTTCEE--TTEECEEEESC
T ss_pred HHhCCCcc--CCcEEEEEecC
Confidence 99999999 69999999986
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=120.56 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=70.4
Q ss_pred CCCCCcEEEEE-cCC-CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc--cCCCCC
Q psy882 18 DEPPHSRLFIL-CGK-DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF--LPNHSK 93 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~-~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~--~~~~g~ 93 (253)
...++++|||+ ||+ .+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|++.|++.. + .|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr 82 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV--FGK 82 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE--TTE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE--CCc
Confidence 34578999999 999 9999999999999999999999877 6899999999999999999998654 6 799
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
+|+|.++..
T Consensus 83 ~l~V~~a~~ 91 (102)
T 1x4d_A 83 PVRVHLSQK 91 (102)
T ss_dssp ECEEEEECC
T ss_pred EEEEEECCC
Confidence 999999985
No 111
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=114.87 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=76.1
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++++++|+++|++| .|.+|+++++ .+|+++|||||+|.+.++|+.|++ |++..+ .|+.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 44567999999 99999999999999999 9999999999 699999999999999999999999 999999 699999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++.++.
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99997643
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=6.3e-18 Score=128.38 Aligned_cols=86 Identities=27% Similarity=0.440 Sum_probs=80.1
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+.+..+.++|||+ ||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~ 118 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRE 118 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 4445568899999 999999999999999999999999999998999999999999999999999999999999 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.+.
T Consensus 119 l~V~~a~~~ 127 (135)
T 2lea_A 119 LRVQMARYG 127 (135)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999863
No 113
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=117.77 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
....+.++|||+ ||+++++++|+++|++||.+ +|+|+.++ +|+++|||||+|.+.++|++|++ +++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i 84 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM--QHRYV 84 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE--CCcEE
Confidence 345567899999 99999999999999999955 99999998 99999999999999999999995 799888 69999
Q ss_pred EEEEccccc
Q psy882 96 KVLIAAKLE 104 (253)
Q Consensus 96 ~v~~a~~~~ 104 (253)
.|.++.+..
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999987644
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=123.28 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHH----HhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLR----QGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~----~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
+.+.+++++|||+ ||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|++.|||..+
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-- 97 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF-- 97 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--
Confidence 4456678999999 99999999876 7999999999987753 678899999999999999999999999999
Q ss_pred CCCcEEEEEcccc
Q psy882 91 HSKPIKVLIAAKL 103 (253)
Q Consensus 91 ~g~~i~v~~a~~~ 103 (253)
.|+.|+|.|+..+
T Consensus 98 ~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 98 QGNPLVITFSETP 110 (127)
T ss_dssp TTSCCEEEECCCC
T ss_pred CCCEEEEEEccCc
Confidence 6999999999863
No 115
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=118.51 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+....+.++|||+ ||..+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 89 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGY 89 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCe
Confidence 34455678999999 9999999999999999999999998655 46799999999999999999999999999 799
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999998743
No 116
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=122.13 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCce-EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v-~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....+.++|||+ ||+.+++++|+++|+.||.| ..|+|+.++ +|.++|||||+|.+.++|+.|++. ++..+ .|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~ 85 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGRE 85 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeE
Confidence 345567999999 99999999999999999999 899999998 999999999999999999999986 99888 7999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|.|.++.++
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999753
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.6e-17 Score=122.16 Aligned_cols=79 Identities=29% Similarity=0.468 Sum_probs=75.6
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||.++++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|+.|+ .|+|..+ .|+.|+|.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 46899999 9999999999999999999999999999999999999999999999999999 7999999 699999999
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
+.+
T Consensus 112 a~~ 114 (124)
T 2jwn_A 112 KRT 114 (124)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=124.09 Aligned_cols=84 Identities=10% Similarity=0.177 Sum_probs=76.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+.+++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|+.|++ |++..+ .|+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34567999999 99999999999999999999987777777799999999999999999999999 999999 799999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998643
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-17 Score=115.89 Aligned_cols=82 Identities=29% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+...++.++|||+ ||+.+++++|+++|++||.|..|+++++ +|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~ 79 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGK 79 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTB
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCc
Confidence 34455678999999 9999999999999999999999999865 89999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.++.
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpj_A 80 QLRVRFACHSA 90 (99)
T ss_dssp CCEEEESSCCS
T ss_pred eEEEEEcCCCC
Confidence 99999998743
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=113.15 Aligned_cols=79 Identities=27% Similarity=0.459 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCcccCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM-NGEFLPNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l-~~~~~~~~g 92 (253)
.+...++.++|||+ ||..+++++|+++|++||.|.+|+++++ +|||||+|.+.++|+.|++.| ++..+ .|
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g 76 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NG 76 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TT
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CC
Confidence 34456778999999 9999999999999999999999999875 899999999999999999998 88888 69
Q ss_pred CcEEEEEcc
Q psy882 93 KPIKVLIAA 101 (253)
Q Consensus 93 ~~i~v~~a~ 101 (253)
+.|+|.|++
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999974
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=3.9e-17 Score=119.45 Aligned_cols=91 Identities=22% Similarity=0.400 Sum_probs=81.5
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCC-CCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~-~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~a 79 (253)
++.++++.........+.+++++|||+ ||+. +++++|+++|++||.|.+|.+ ++|||||+|.+.++|+.|
T Consensus 7 g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A 78 (110)
T 1wf1_A 7 GMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAA 78 (110)
T ss_dssp SCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHH
T ss_pred CcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHH
Confidence 456777777766666667778999999 9999 999999999999999999988 489999999999999999
Q ss_pred HHHhCCcccCCCCCcEEEEEccc
Q psy882 80 VEEMNGEFLPNHSKPIKVLIAAK 102 (253)
Q Consensus 80 i~~l~~~~~~~~g~~i~v~~a~~ 102 (253)
++.|++..+ .|+.|+|.++.+
T Consensus 79 ~~~l~g~~~--~g~~l~V~~a~~ 99 (110)
T 1wf1_A 79 VLGENGRVL--AGQTLDINMAGE 99 (110)
T ss_dssp HHHHTTCEE--TTEECCEEESCC
T ss_pred HHHcCCCEE--CCeEEEEEECCC
Confidence 999999999 799999999975
No 122
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3.1e-17 Score=113.72 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
..+..|||+ |++.+||++|+++|.+||+|.+++++. ++|||||+|.+.++|++|++.||+..+ .|++|+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~ 76 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAE 76 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEE
Confidence 457889999 999999999999999999999999876 499999999999999999999999999 69999999
Q ss_pred Eccc
Q psy882 99 IAAK 102 (253)
Q Consensus 99 ~a~~ 102 (253)
+|..
T Consensus 77 ~A~e 80 (89)
T 2wbr_A 77 SPSE 80 (89)
T ss_dssp CCCH
T ss_pred ECCH
Confidence 9853
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=3e-17 Score=121.75 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN---IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~---v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
....+.++|||+ ||+++++++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|++|++ +++..+ .|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~g 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GH 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CC
Confidence 334567999999 9999999999999999999 89999999986 9999999999999999999999 999999 69
Q ss_pred CcEEEEEccc
Q psy882 93 KPIKVLIAAK 102 (253)
Q Consensus 93 ~~i~v~~a~~ 102 (253)
+.|+|.++..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 9999999874
No 124
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=116.04 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+...++.++|||+ ||+.+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|+.|++.|++..+ .|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 81 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGR 81 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCe
Confidence 34456788999999 99999999999999999987 56666 5899999999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999998743
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.7e-17 Score=124.78 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=75.9
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN---IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~---v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
+..+.++|||+ ||+++|+++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|++|++ +++..+ .|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCE
Confidence 34567899999 9999999999999999999 89999999986 9999999999999999999999 999999 699
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|+|.++.++
T Consensus 116 ~i~V~~a~~~ 125 (136)
T 2hgl_A 116 YIEVFKSHRT 125 (136)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECChH
Confidence 9999998753
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=114.48 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....+++++|||+ ||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|++..+.+.|+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 3445678999999 9999999999999999999999988765 78999999999999999999999999312899
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998743
No 127
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=115.50 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||+.+++++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 83 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNK 83 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeE
Confidence 4455678999999 999999999999999874 678888988999999999999999999999999999999 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.++.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-17 Score=118.43 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCCCCcEEEEE-cCCC-CCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--cccCCCCC
Q psy882 18 DEPPHSRLFIL-CGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG--EFLPNHSK 93 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~-~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~--~~~~~~g~ 93 (253)
..+++++|||+ ||++ +++++|+++|++||.|.+|+|++. +|||||+|.+.++|+.|++.|++ ..+ .|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l--~Gr 92 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWF--QGR 92 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCS--SSS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCE
Confidence 35678999999 9998 999999999999999999999754 89999999999999999998865 446 799
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|+|.++...
T Consensus 93 ~l~V~~a~~~ 102 (112)
T 1x4f_A 93 CVKVDLSEKY 102 (112)
T ss_dssp CCEEEEECSC
T ss_pred EEEEEECccc
Confidence 9999999763
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.8e-17 Score=134.86 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=76.2
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCC--ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFG--NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G--~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..++|||+ ||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|++||+.|++..+ .|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 56789999 999999999999999999 999999999999999999999999999999999999999999 7999999
Q ss_pred EEcccc
Q psy882 98 LIAAKL 103 (253)
Q Consensus 98 ~~a~~~ 103 (253)
.++.+.
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 999863
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=112.04 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=71.4
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
..++.++|||+ ||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|+.|++.|++..+ .|+.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 73 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNIN 73 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEE
Confidence 45678999999 99999999999999999999999887 67999999999999999999999998 799999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++.+..
T Consensus 74 v~~a~~~~ 81 (90)
T 2dnq_A 74 VEASKNKS 81 (90)
T ss_dssp EECSSCCC
T ss_pred EEECCCCC
Confidence 99998743
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=1.3e-16 Score=117.48 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.+++++|||+ ||..+++++|+++|++||.|.+|.++.+. .++|||||+|.+.++|..|++.|+|..+ .|+.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 4567899999 99999999999999999999999998764 5699999999999999999999999999 6999999
Q ss_pred EEcccc
Q psy882 98 LIAAKL 103 (253)
Q Consensus 98 ~~a~~~ 103 (253)
.++.+.
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 999873
No 132
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1e-16 Score=125.77 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=84.5
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.. ....++.++|||+ ||..+++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|+
T Consensus 77 g~~i~v~~~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 77 GQSLKIRRPHD---YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TEECEEECCSS---CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CceeeecCCcc---cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 56667766543 2334557999999 9999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEcc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~ 101 (253)
+.|+|..+ .|+.|.|.||.
T Consensus 154 ~~l~g~~~--~g~~l~V~~As 172 (172)
T 2g4b_A 154 AGLNGMQL--GDKKLLVQRAS 172 (172)
T ss_dssp HHHTTCEE--TTEECEEEECC
T ss_pred HHcCCCEE--CCeEEEEEeCC
Confidence 99999999 69999999984
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=122.13 Aligned_cols=88 Identities=26% Similarity=0.311 Sum_probs=74.6
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.....+++++|||+ ||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~ 95 (115)
T 2cpx_A 18 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGK 95 (115)
T ss_dssp CCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSC
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCc
Confidence 34455678999999 999999999999999999994332222222788999999999999999999999999999 699
Q ss_pred cEEEEEccccc
Q psy882 94 PIKVLIAAKLE 104 (253)
Q Consensus 94 ~i~v~~a~~~~ 104 (253)
.|+|.++.+..
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998754
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=113.96 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=66.2
Q ss_pred CcEEEEE-cCCCC------CHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC-
Q psy882 22 HSRLFIL-CGKDV------TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK- 93 (253)
Q Consensus 22 ~~~lfv~-Lp~~~------te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~- 93 (253)
+++|||+ ||..+ ++++|+++|++||.|.+|+++ +.+|.++|||||+|.+.++|+.|++.|||..+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCce
Confidence 4789999 99999 779999999999999999987 35899999999999999999999999999999 688
Q ss_pred cEEE
Q psy882 94 PIKV 97 (253)
Q Consensus 94 ~i~v 97 (253)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=119.54 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN---IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~---v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.+..+.++|||+ ||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|+.|++ +++..+ .|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~g 81 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQ 81 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CC
Confidence 345578999999 9999999999999999998 89999999986 9999999999999999999999 999888 69
Q ss_pred CcEEEEEcccc
Q psy882 93 KPIKVLIAAKL 103 (253)
Q Consensus 93 ~~i~v~~a~~~ 103 (253)
+.|+|.++.++
T Consensus 82 r~i~V~~a~~~ 92 (107)
T 2lmi_A 82 RYVEVYEINNE 92 (107)
T ss_dssp SCCCCEECCHH
T ss_pred eEEEEEECCHH
Confidence 99999998753
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=3.2e-16 Score=122.25 Aligned_cols=96 Identities=24% Similarity=0.495 Sum_probs=84.3
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++++++.++.. .....+.++|||+ ||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|+
T Consensus 72 g~~l~v~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 72 NKRLKVSYARP---GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp TEECEEEECCC---CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CcEEEEEecCC---CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 56667777644 3344577899999 9999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEc
Q psy882 81 EEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a 100 (253)
+.|+|..+.+.+++|+|.||
T Consensus 149 ~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 149 SALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCEecCCCeEEEEEeC
Confidence 99999999533499999986
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-18 Score=127.23 Aligned_cols=86 Identities=29% Similarity=0.491 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE--------IRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~--------i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
++.++.++|||+ ||..+++++|+++|++||.|.. |+++.++.++.++|||||+|.+.++|+.|++.|++..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 345678999999 9999999999999999999998 9999998899999999999999999999999999999
Q ss_pred cCCCCCcEEEEEccccc
Q psy882 88 LPNHSKPIKVLIAAKLE 104 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~~~ 104 (253)
+ .|+.|+|.++.++.
T Consensus 82 ~--~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 F--SGNPIKVSFATRRA 96 (116)
Confidence 9 69999999998743
No 138
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.6e-18 Score=120.99 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=75.7
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++++++|+++|++||.|.. .++.++.+|.++|||||+|.+.++|+.|++ |++..+ .|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEE
Confidence 34568999999 9999999999999999999988 777787789999999999999999999998 999999 699999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++.+..
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99998744
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=4.2e-17 Score=116.39 Aligned_cols=81 Identities=26% Similarity=0.478 Sum_probs=73.5
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHH----HhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLR----QGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~----~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
+.+++++|||+ ||..+++++|+ ++|++||.|.+|.+++ +|.++|||||+|.+.++|+.|++.|+|..+ .|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CC
Confidence 45678999999 99999999999 9999999999998873 567899999999999999999999999999 69
Q ss_pred CcEEEEEcccc
Q psy882 93 KPIKVLIAAKL 103 (253)
Q Consensus 93 ~~i~v~~a~~~ 103 (253)
+.|+|.++.++
T Consensus 79 ~~l~v~~a~~~ 89 (97)
T 1nu4_A 79 KPMRIQYAKTD 89 (97)
T ss_dssp EECEEEECSSC
T ss_pred cEEEEEEccCC
Confidence 99999999874
No 140
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=112.87 Aligned_cols=79 Identities=18% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
..+..++|||+ ||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 44568999999 999999999999999999996 666654 6789999999999999999999999999 699999
Q ss_pred EEEcccc
Q psy882 97 VLIAAKL 103 (253)
Q Consensus 97 v~~a~~~ 103 (253)
|.++.++
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999764
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.4e-16 Score=112.73 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=69.7
Q ss_pred CCCCCCCCcEEEEE-cCC-CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGK-DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~-~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.....+++++|||+ ||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|+.|++.|+|..+ .|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g 84 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FG 84 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TT
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CC
Confidence 44556789999999 998 99999999999999999999882 78999999999999999999999999 69
Q ss_pred CcEEEEEccc
Q psy882 93 KPIKVLIAAK 102 (253)
Q Consensus 93 ~~i~v~~a~~ 102 (253)
+.|+|.++.+
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999999875
No 142
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1.8e-17 Score=112.67 Aligned_cols=74 Identities=22% Similarity=0.428 Sum_probs=69.8
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
+|||+ ||+++++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|+.|++. ++..+ .|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEEC
Confidence 58999 999999999999999999999999999999999999999999999999999984 88888 6999999875
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=117.33 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
.+..++|||+ ||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|+.|++.|||..+ .|+.|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 78 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYL 78 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 3457899999 999999999999999999999998875 388999999999999999999999999 6999999
Q ss_pred EEcccccc
Q psy882 98 LIAAKLEF 105 (253)
Q Consensus 98 ~~a~~~~~ 105 (253)
.|+....+
T Consensus 79 ~~a~~~~~ 86 (111)
T 1whx_A 79 EWAPIGVF 86 (111)
T ss_dssp EEEETTTT
T ss_pred EECCCCcc
Confidence 99987544
No 144
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=114.25 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC---
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS--- 92 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g--- 92 (253)
....+.++|||+ ||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|+.|++.||+..+ .|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~~ 80 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEG 80 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE--ECTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc--cCCcC
Confidence 344568999999 9999999999999999999999999876 8999999999999999999999999 57
Q ss_pred --CcEEEEEcccc
Q psy882 93 --KPIKVLIAAKL 103 (253)
Q Consensus 93 --~~i~v~~a~~~ 103 (253)
+.|+|.++.+.
T Consensus 81 ~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 81 ETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEEEEESSCC
T ss_pred cceEEEEEeCCCC
Confidence 99999999874
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=3.9e-17 Score=117.75 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|+.|++ ++..+ .|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~ 79 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLK 79 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEE
Confidence 34567999999 99999999999999999999999999998 99999999999999999999998 88888 699999
Q ss_pred EEEcccc
Q psy882 97 VLIAAKL 103 (253)
Q Consensus 97 v~~a~~~ 103 (253)
|.++.+.
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9998753
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.7e-16 Score=122.39 Aligned_cols=81 Identities=20% Similarity=0.461 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||+.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|..|++.|+|..+ .|+.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 139 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCR 139 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeE
Confidence 4455678999999 9999999999999999999999999887 489999999999999999999999998 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.++
T Consensus 140 l~v~~a~~~ 148 (150)
T 2i2y_A 140 VRVELSNGE 148 (150)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999764
No 147
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2.6e-16 Score=126.16 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=78.8
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.+.++|||+ ||..+++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|+|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 189 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQ 189 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 567999999 999999999999999999999999999998999999999999999999999999999999 69999999
Q ss_pred Eccccc
Q psy882 99 IAAKLE 104 (253)
Q Consensus 99 ~a~~~~ 104 (253)
++.+..
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998743
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=116.33 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.1
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||+++++++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|++|+ .+++..+ .|+.|.|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 35799999 99999999999999999 899999999985 999999999999999999999 6899999 699999998
Q ss_pred cccc
Q psy882 100 AAKL 103 (253)
Q Consensus 100 a~~~ 103 (253)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8753
No 149
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=115.18 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=70.8
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
..+.+++|||+ ||.++++++|+++|++||.|.+|++++ ++|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 94 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLR 94 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 34567999999 999999999999999999999999884 489999999999999999999999999 699999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.|+.+
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999875
No 150
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.1e-16 Score=115.27 Aligned_cols=79 Identities=32% Similarity=0.620 Sum_probs=70.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
......+.++|||+ ||.++++++|+++|++||.|.+|.++ +|||||+|.+.++|+.|++.|+|..+ .|+
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~ 93 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQ 93 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTE
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCe
Confidence 34456678999999 99999999999999999999999887 78999999999999999999999999 799
Q ss_pred cEEEEEcccc
Q psy882 94 PIKVLIAAKL 103 (253)
Q Consensus 94 ~i~v~~a~~~ 103 (253)
.|.|.++.+.
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999999764
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=125.32 Aligned_cols=83 Identities=24% Similarity=0.461 Sum_probs=77.9
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...++++|||+ ||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567999999 99999999999999999999999999998 999999999999999999999999999998 799999
Q ss_pred EEEcccc
Q psy882 97 VLIAAKL 103 (253)
Q Consensus 97 v~~a~~~ 103 (253)
|.++...
T Consensus 161 V~~a~~~ 167 (177)
T 2f3j_A 161 IQLVASQ 167 (177)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9998764
No 152
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=115.35 Aligned_cols=78 Identities=31% Similarity=0.550 Sum_probs=73.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
..++.++|||+ ||..+++++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVK 92 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 45678999999 9999999999999999999999999887 89999999999999999999999999 699999
Q ss_pred EEEcccc
Q psy882 97 VLIAAKL 103 (253)
Q Consensus 97 v~~a~~~ 103 (253)
|.|+.+.
T Consensus 93 v~~a~~~ 99 (109)
T 1x4g_A 93 CYWGKES 99 (109)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999874
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-16 Score=111.63 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEE-cCC-CCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 17 NDEPPHSRLFIL-CGK-DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~-~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.+.+++++|||+ ||+ .+++++|+++|++||.|.+|.+. +|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 74 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKK 74 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTT
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcE
Confidence 456789999999 998 99999999999999999999883 78999999999999999999999999 6999
Q ss_pred EEEEEcccc
Q psy882 95 IKVLIAAKL 103 (253)
Q Consensus 95 i~v~~a~~~ 103 (253)
|+|.++.+.
T Consensus 75 l~V~~a~~~ 83 (96)
T 2kvi_A 75 LILEVSSSN 83 (96)
T ss_dssp BCEEEEECC
T ss_pred EEEEEcCcC
Confidence 999999764
No 154
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=113.85 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 82 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRS 82 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 4455678999999 99999999999999999988665 34788999999999999999999999999999 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.+..
T Consensus 83 l~v~~a~~~~ 92 (96)
T 1fjc_A 83 VSLYYTGEKG 92 (96)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEcCCCC
Confidence 9999997643
No 155
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.5e-16 Score=116.42 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
.+..++|||+ ||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|+.|++.|||..+ .|+.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~ 98 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVIT 98 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 3456899999 999999999999999999 8999987543 4699999999999999999999999999 799999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999865
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=6.3e-16 Score=120.30 Aligned_cols=96 Identities=30% Similarity=0.487 Sum_probs=82.0
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++++++.++.. .....+.++|||+ ||..+++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|..|+
T Consensus 71 g~~l~v~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 71 TKTIKVSYARP---SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp TEECEEEECCC---CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CceEEEEecCC---CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 45666766643 2334567899999 9999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEc
Q psy882 81 EEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a 100 (253)
+.|+|..+.+...+|+|.||
T Consensus 148 ~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 148 KGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCccCCCccceEEEeC
Confidence 99999999422246999886
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=5.2e-16 Score=126.07 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=78.3
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.+.++|||+ ||..+++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|..|++.|+|..+ .|+.|.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--GGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--SSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe--CCcEEEEE
Confidence 567899999 999999999999999999999999999999999999999999999999999999999999 69999999
Q ss_pred Ecccc
Q psy882 99 IAAKL 103 (253)
Q Consensus 99 ~a~~~ 103 (253)
++.+.
T Consensus 201 ~a~~~ 205 (216)
T 2qfj_A 201 KAVTP 205 (216)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99874
No 158
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=108.91 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.9
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+....+.++|||+ ||+.+++++|+++|++||.|.+|.+++ +||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 73 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKR 73 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcE
Confidence 4456678999999 999999999999999999999999873 3999999999999999999999999 6999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.+..
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998743
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.9e-16 Score=118.41 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceE--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQ--EIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~--~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
.+..+.++|||+ ||+++|+++|+++|++| .|. +|+|+.++. |+++|||||+|.+.++|++|++. ++..+ .|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR 111 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHR 111 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCE
Confidence 344567899999 99999999999999999 566 999999986 99999999999999999999984 77777 699
Q ss_pred cEEEEEcccccc
Q psy882 94 PIKVLIAAKLEF 105 (253)
Q Consensus 94 ~i~v~~a~~~~~ 105 (253)
.|.|.++.++++
T Consensus 112 ~I~V~~a~~~e~ 123 (126)
T 2hgm_A 112 YIEVFKSSQEEV 123 (126)
T ss_dssp CCCCEEECHHHH
T ss_pred EEEEEECCHHHh
Confidence 999999876543
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=109.67 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEI-RCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i-~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
....++|||+ ||+.+++++|+++|++||.|.+| .++.++.++ .|||+|.+.++|+.|++.|+|..+ .|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3457899999 99999999999999999999999 588886443 399999999999999999999999 699999
Q ss_pred EEEccccc
Q psy882 97 VLIAAKLE 104 (253)
Q Consensus 97 v~~a~~~~ 104 (253)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998764
No 161
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=109.02 Aligned_cols=80 Identities=20% Similarity=0.467 Sum_probs=71.8
Q ss_pred CCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCC--CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC
Q psy882 15 EYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPF--GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91 (253)
Q Consensus 15 ~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~--G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~ 91 (253)
+....++.++|||+ ||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|+.|++.|+|..+ .
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~ 77 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--D 77 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--T
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--C
Confidence 44456678999999 99999999999999999 999988754 67999999999999999999999999 6
Q ss_pred CCcEEEEEccccc
Q psy882 92 SKPIKVLIAAKLE 104 (253)
Q Consensus 92 g~~i~v~~a~~~~ 104 (253)
|+.|+|.++.+..
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998743
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.1e-16 Score=115.94 Aligned_cols=78 Identities=18% Similarity=0.384 Sum_probs=70.8
Q ss_pred cEEEEE-c----CCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCcc
Q psy882 23 SRLFIL-C----GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK----TSE----AAKAVE--EMNGEF 87 (253)
Q Consensus 23 ~~lfv~-L----p~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~----~~~----A~~ai~--~l~~~~ 87 (253)
++|||+ | |+.+++.+|+++|++||+|.+|.++.||.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 689999 9 9999999999999999999999999999999999999999995 333 888988 789999
Q ss_pred cCCCCCcEEEEEccc
Q psy882 88 LPNHSKPIKVLIAAK 102 (253)
Q Consensus 88 ~~~~g~~i~v~~a~~ 102 (253)
+ .|+.|+|.+-..
T Consensus 83 I--~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I--MGFKFEVILNKH 95 (136)
T ss_dssp E--TTEEEEEEECCT
T ss_pred e--cCcEEEEEECcc
Confidence 9 799999998764
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=1.1e-16 Score=124.94 Aligned_cols=96 Identities=16% Similarity=0.317 Sum_probs=81.9
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.. .....+.++|||+ ||..+++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|+
T Consensus 70 g~~i~v~~~~~---~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 70 GKVIDPKRAIP---RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp TEECCCEECCC---HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred CeEcccccccc---hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34455544432 1223357899999 9999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEcccc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
+ +++..+ .|+.|.|.++.++
T Consensus 147 ~-~~~~~~--~g~~i~V~~a~pk 166 (167)
T 2cjk_A 147 Q-NKFIDF--KDRKIEIKRAEPR 166 (167)
T ss_dssp H-CSEECS--SSSCEEEEECCCC
T ss_pred h-CCCEEe--CCeEEEEeecCCC
Confidence 8 888888 6999999999864
No 164
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=113.40 Aligned_cols=75 Identities=17% Similarity=0.491 Sum_probs=70.4
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEcc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~ 101 (253)
++|||+ ||+++++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 589999 9999999999999999999999999887 589999999999999999999999998 69999999998
Q ss_pred ccc
Q psy882 102 KLE 104 (253)
Q Consensus 102 ~~~ 104 (253)
+..
T Consensus 74 ~~~ 76 (101)
T 2hvz_A 74 GMP 76 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 743
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=7.3e-16 Score=111.26 Aligned_cols=79 Identities=32% Similarity=0.513 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
+....+.++|||+ ||+.+++++|+++|++||.|..|+++ +|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 74 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDL--EGEN 74 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCcc--CCCE
Confidence 3445578999999 99999999999999999999999886 45999999999999999999999999 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|.|.++.+..
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999998743
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=108.75 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...++.++|||+ ||+.+++++|+++|++||.|.+|++++ +||||+|.+.++|+.|++.|+|..+ .|+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 73 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRI 73 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEE
Confidence 345678999999 999999999999999999999999873 3999999999999999999999999 79999
Q ss_pred EEEEccccc
Q psy882 96 KVLIAAKLE 104 (253)
Q Consensus 96 ~v~~a~~~~ 104 (253)
+|.++.+..
T Consensus 74 ~v~~a~~~~ 82 (90)
T 2dnp_A 74 NVELSTKGQ 82 (90)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999998743
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=8.6e-16 Score=122.90 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=80.6
Q ss_pred CCcccccCCCCCCC---CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHH
Q psy882 2 DRNYRINTHDRSRE---YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77 (253)
Q Consensus 2 ~~~~~~~~~~~~~~---~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~ 77 (253)
++.+++.++..... +....+.++|||+ ||.++++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.
T Consensus 81 g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp TEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 45566666544332 2233456899999 9999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCcccCCCCCcEEEEEccccc
Q psy882 78 KAVEEMNGEFLPNHSKPIKVLIAAKLE 104 (253)
Q Consensus 78 ~ai~~l~~~~~~~~g~~i~v~~a~~~~ 104 (253)
+|++. ++..+ .|+.|.|.++.++.
T Consensus 161 ~A~~~-~~~~~--~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 161 KIVIQ-KYHTV--NGHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHC-SCCEE--TTEECEEEECC---
T ss_pred HHHHh-CCcEE--CCEEEEEEecCChh
Confidence 99986 78888 69999999998743
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=121.76 Aligned_cols=84 Identities=30% Similarity=0.468 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEE--E---eecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIR--C---VKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~--i---~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
....++++|||+ ||+.+++++|+++|++||.|..+. + +....+|.++|||||+|.+.++|..|++.|||..+
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-- 117 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-- 117 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--
Confidence 345678999999 999999999999999999987641 1 11123789999999999999999999999999999
Q ss_pred CCCcEEEEEccc
Q psy882 91 HSKPIKVLIAAK 102 (253)
Q Consensus 91 ~g~~i~v~~a~~ 102 (253)
.|+.|.|.++.+
T Consensus 118 ~g~~l~V~~a~~ 129 (143)
T 3egn_A 118 FGKPMVVQFARS 129 (143)
T ss_dssp TTEECEEEECCC
T ss_pred CCcEEEEEECCC
Confidence 699999999976
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=107.40 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=63.6
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ ||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++ +++..+.+.|+.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 3455678999999 9999999999999999999999999876 59999999999999983 566655446999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|.|.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998643
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=1.2e-15 Score=137.13 Aligned_cols=85 Identities=22% Similarity=0.441 Sum_probs=79.7
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v 97 (253)
..+.++|||+ ||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||+.|||..| .|+.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 4467899999 999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred EEcccccc
Q psy882 98 LIAAKLEF 105 (253)
Q Consensus 98 ~~a~~~~~ 105 (253)
.++.+...
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987443
No 171
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=108.01 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=70.5
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
.....++|||+ ||+++++++|+++|++||.|.+| +.++.+|. ||||+|.+.++|+.|++ |++..+ .|+.|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~ 75 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLR 75 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEE
Confidence 34567899999 99999999999999999999987 66665665 99999999999999999 999999 699999
Q ss_pred EEEcccccc
Q psy882 97 VLIAAKLEF 105 (253)
Q Consensus 97 v~~a~~~~~ 105 (253)
|.++.+...
T Consensus 76 V~~a~~~~~ 84 (94)
T 2e5g_A 76 VRPREQKEF 84 (94)
T ss_dssp CBCSCCSCC
T ss_pred EEECCcCCC
Confidence 999876443
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=4.8e-16 Score=126.73 Aligned_cols=97 Identities=28% Similarity=0.400 Sum_probs=81.1
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.... .......++|||+ ||+.+++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|+
T Consensus 84 g~~i~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 84 GKPVRIMWSQRDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp TEECEEEECCCCT-HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHH
T ss_pred Ccccccccccccc-cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHH
Confidence 3455555554322 1222346789999 99999999999999999999999999985 457999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEcccc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
+.|||..+ .|+.|.|.++.++
T Consensus 161 ~~lng~~~--~g~~i~V~~a~~~ 181 (213)
T 4f02_A 161 EKMNGMLL--NDRKVFVGRFKSR 181 (213)
T ss_dssp HHHTTCEE--TTEECEEEECCCH
T ss_pred HHhCCCEE--CCEEEEEEEcCCC
Confidence 99999999 7999999999763
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.9e-15 Score=118.57 Aligned_cols=84 Identities=33% Similarity=0.517 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC-CCCc
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN-HSKP 94 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~-~g~~ 94 (253)
....+.++|||+ ||..+++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|++.|+|..+.. ++++
T Consensus 90 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 90 NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 344577899999 99999999999999999999999999996 69999999999999999999999999987742 3599
Q ss_pred EEEEEcc
Q psy882 95 IKVLIAA 101 (253)
Q Consensus 95 i~v~~a~ 101 (253)
|.|.||.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999984
No 174
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.3e-15 Score=106.87 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=69.8
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
+..++|||+ ||+.+++++|+++|++| .|.++++. +++|||||+|.+.++|+.|++.|+|..+ .|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 467899999 99999999999999999 99999885 4599999999999999999999999999 79999999
Q ss_pred Eccccc
Q psy882 99 IAAKLE 104 (253)
Q Consensus 99 ~a~~~~ 104 (253)
++..+.
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 997643
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-16 Score=113.74 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCCCCcEEEE--E-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCccc---CCC
Q psy882 18 DEPPHSRLFI--L-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL---PNH 91 (253)
Q Consensus 18 ~~~~~~~lfv--~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~---~~~ 91 (253)
...|+++||| + ||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|||..+ .+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456889999 9 9999999999999999999999987643 79999999999999999999999876 224
Q ss_pred CCcEEEEEccc
Q psy882 92 SKPIKVLIAAK 102 (253)
Q Consensus 92 g~~i~v~~a~~ 102 (253)
|++|.|.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999999865
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.6e-16 Score=120.89 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=73.4
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
...+.++|||+ ||+++|+++|+++|++|| |.+|+|+.++. |+++|||||+|.+.++|++|+ .+++..+ .++.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEE
Confidence 34567899999 999999999999999999 66999999985 999999999999999999999 7899888 699999
Q ss_pred EEEcccccc
Q psy882 97 VLIAAKLEF 105 (253)
Q Consensus 97 v~~a~~~~~ 105 (253)
|.++.+...
T Consensus 117 V~~a~~~~~ 125 (139)
T 2hgn_A 117 LFLNSTTGA 125 (139)
T ss_dssp CEECCCSCC
T ss_pred EEECCCCCC
Confidence 999887543
No 177
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-16 Score=109.66 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCc-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-cccCCCCCc
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGN-IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG-EFLPNHSKP 94 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~-v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~-~~~~~~g~~ 94 (253)
..++.++|||+ ||+++++++|+++|++||. |..+.+ . ++|||||+|.+.++|+.|++.|+| ..+ .|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~ 74 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKI 74 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEE
Confidence 44677999999 9999999999999999999 555554 2 389999999999999999999999 888 6999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.++.
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998754
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-15 Score=106.02 Aligned_cols=79 Identities=33% Similarity=0.490 Sum_probs=70.9
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
....++.++|||+ | .+++++|+++|++||.|.+|.+. .++|||||+|.+.++|+.|++.|++..+ .|+.
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~ 78 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQ 78 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeE
Confidence 3345578999999 9 89999999999999999999885 4589999999999999999999999999 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.+..
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=115.94 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCce----EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNI----QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v----~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
..+.++|||+ ||+++|+++|+++|++||.| .+|+|+.++ +|+++|||||+|.+.++|++|++. ++..+ .++
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR 95 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKR 95 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCe
Confidence 3567899999 99999999999999999975 689999995 899999999999999999999986 88888 699
Q ss_pred cEEEEEccc
Q psy882 94 PIKVLIAAK 102 (253)
Q Consensus 94 ~i~v~~a~~ 102 (253)
.|.|..+.+
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999988864
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=6.8e-15 Score=109.56 Aligned_cols=80 Identities=25% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCCCcE--EEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 19 EPPHSR--LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGV-AYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 19 ~~~~~~--lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~-~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.++++. |||+ ||+.+++++|+++|++||.|.+|+|+.. .|+ |||+|.+.++|..|++.|||..+.+..+.
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 345544 5789 9999999999999999999999998653 385 99999999999999999999999532379
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.++.+..
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998754
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.2e-15 Score=109.25 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCcEEEEE-cCC-----CCCHHHHHHhhcCCCceEEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 20 PPHSRLFIL-CGK-----DVTEDDLRQGFSPFGNIQEIRCVKDRNT-GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 20 ~~~~~lfv~-Lp~-----~~te~~l~~~f~~~G~v~~i~i~~~~~t-g~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
.++++|+|. |.. +-++++|++.|++||.|.+|+|++++.+ +.++|+|||+|.+.++|.+|++.|||..+ .|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 468899999 742 2378999999999999999999998754 68899999999999999999999999999 79
Q ss_pred CcEEEEEccccccCc
Q psy882 93 KPIKVLIAAKLEFKE 107 (253)
Q Consensus 93 ~~i~v~~a~~~~~~~ 107 (253)
+.|.|.++..+.|..
T Consensus 84 r~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 84 RVVKACFYNLDKFRV 98 (105)
T ss_dssp EECEEEECCHHHHHT
T ss_pred cEEEEEEcCHHHhhh
Confidence 999999998866644
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=112.13 Aligned_cols=64 Identities=19% Similarity=0.391 Sum_probs=59.8
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHh
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT---GESKGVAYIRFSKTSEAAKAVEEM 83 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~t---g~~~g~~fV~f~~~~~A~~ai~~l 83 (253)
..+.++|||+ ||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|+.|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4567999999 999999999999999999999 888888777 799999999999999999999988
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.9e-15 Score=117.82 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=81.3
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++.... .....+.++|||+ ||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+
T Consensus 80 g~~l~v~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 80 GNEIKLEKPKGRD-SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TEEEEEECCCCSS-CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred CeEEEEecCCCcc-ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 5677887775533 3445678999999 99999999999999999988665 458899999999999999999999
Q ss_pred HHhCCcccCCCCCcEEEEEcccc
Q psy882 81 EEMNGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 81 ~~l~~~~~~~~g~~i~v~~a~~~ 103 (253)
+.|+|..+ .|+.|.|.|+.++
T Consensus 154 ~~l~g~~~--~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAEI--DGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEEE--TTEEEEEEECSSC
T ss_pred HHhCCCEE--CCeEEEEEecCCC
Confidence 99999999 6999999999763
No 184
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=7e-15 Score=110.06 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=68.6
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGV-AYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~-~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
..|||+ |++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|+.|++.|||..+.+..+.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 556799 99999999999999999999999888653 677 99999999999999999999999522289999999
Q ss_pred ccccc
Q psy882 101 AKLEF 105 (253)
Q Consensus 101 ~~~~~ 105 (253)
++...
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87544
No 185
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=5e-15 Score=114.97 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=70.4
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEc
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a 100 (253)
..+|||+ ||+.+++++|+++|++||.|.+|++..+ .++|||||+|.+.++|+.|++.|+|..+.+.++.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4668999 9999999999999999999999998755 3579999999999999999999999999533499999999
Q ss_pred cccc
Q psy882 101 AKLE 104 (253)
Q Consensus 101 ~~~~ 104 (253)
.+..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8753
No 186
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.3e-15 Score=110.07 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc----
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP---- 94 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~---- 94 (253)
...++|||+ ||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|+.||+.||+..+ .|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeE
Confidence 457899999 9999999999999999999999998765 8999999999999999999999999 6888
Q ss_pred -EEEEEccc
Q psy882 95 -IKVLIAAK 102 (253)
Q Consensus 95 -i~v~~a~~ 102 (253)
|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 77766654
No 187
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=103.01 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=65.0
Q ss_pred CCCCCcE-EEEE-cCCCCCHHH----HHHhhcCC-CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC
Q psy882 18 DEPPHSR-LFIL-CGKDVTEDD----LRQGFSPF-GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90 (253)
Q Consensus 18 ~~~~~~~-lfv~-Lp~~~te~~----l~~~f~~~-G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~ 90 (253)
..+|+.+ |||+ ||+.+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l-- 71 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV-- 71 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--
Confidence 3456666 9999 999999988 56899999 599998 33 9999999999999999999999999
Q ss_pred CCCcEEEEEccc
Q psy882 91 HSKPIKVLIAAK 102 (253)
Q Consensus 91 ~g~~i~v~~a~~ 102 (253)
.|++|+|.+|..
T Consensus 72 ~gr~i~v~~A~~ 83 (96)
T 2diu_A 72 FGNRIIVSFTPK 83 (96)
T ss_dssp SSSCCEEESSCC
T ss_pred CCceEEEEecCC
Confidence 599999999986
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2.8e-15 Score=104.57 Aligned_cols=72 Identities=19% Similarity=0.377 Sum_probs=66.6
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCC----C-------ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPF----G-------NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~ 86 (253)
..+.++|||+ ||+++++++|+++|++| | .|.+++++++ +|||||+|.+.++|+.|+ .|+|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467999999 99999999999999999 8 8999998866 899999999999999999 99999
Q ss_pred ccCCCCCcEEEEE
Q psy882 87 FLPNHSKPIKVLI 99 (253)
Q Consensus 87 ~~~~~g~~i~v~~ 99 (253)
.+ .|+.|+|+.
T Consensus 76 ~~--~g~~l~V~r 86 (87)
T 2hzc_A 76 IF--QGQSLKIRR 86 (87)
T ss_dssp EE--TTEECEEEC
T ss_pred EE--CCeEEEEeC
Confidence 99 799999975
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=8.2e-15 Score=108.98 Aligned_cols=79 Identities=33% Similarity=0.490 Sum_probs=70.0
Q ss_pred CCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCc
Q psy882 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~ 94 (253)
.....++++|||+ | ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|+.|++.|+|..+ .|+.
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~ 102 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQ 102 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCB
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 3345678999999 9 69999999999999999999886 3489999999999999999999999998 7999
Q ss_pred EEEEEccccc
Q psy882 95 IKVLIAAKLE 104 (253)
Q Consensus 95 i~v~~a~~~~ 104 (253)
|+|.|+.+..
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=2.8e-14 Score=114.61 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEE
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLI 99 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~ 99 (253)
+.++|||+ ||+.+++++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|+.|++.++ ..+ .|+.|.|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 45899999 99999999999999999999999999987 68999999999999999999998654 567 699999999
Q ss_pred ccc
Q psy882 100 AAK 102 (253)
Q Consensus 100 a~~ 102 (253)
+..
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=3.8e-14 Score=116.94 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCCcEEEEE-cCCCC---------CHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcc
Q psy882 18 DEPPHSRLFIL-CGKDV---------TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEF 87 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~---------te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~ 87 (253)
..++.++|||+ ||..+ +|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45678999999 99998 79999999999999999999865 8999999999999999999999999
Q ss_pred cCC----------CCCcEEEEEccc
Q psy882 88 LPN----------HSKPIKVLIAAK 102 (253)
Q Consensus 88 ~~~----------~g~~i~v~~a~~ 102 (253)
+.. .|+.|.|.||..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 831 489999999976
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=100.50 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=65.1
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEE
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~ 98 (253)
.++++|||+ ||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++| ++..+.+.|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 467999999 9999999999999999999999998866 589999999999999754 444443379999999
Q ss_pred Eccccc
Q psy882 99 IAAKLE 104 (253)
Q Consensus 99 ~a~~~~ 104 (253)
++.++.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 988754
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=1.5e-13 Score=113.08 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=70.9
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC-CCcE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH-SKPI 95 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~-g~~i 95 (253)
.+++++|||+ ||..+++++|+++|++|| .|.+|+++.+. +|||||+|.+.++|.+|++.|+|..+ . |+.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g~~l 220 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDL--GENHHL 220 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBS--SSSCBC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHHHHCCCcc--CCCCeE
Confidence 3568999999 999999999999999999 99999987642 79999999999999999999999999 5 9999
Q ss_pred EEEEccc
Q psy882 96 KVLIAAK 102 (253)
Q Consensus 96 ~v~~a~~ 102 (253)
+|.|+.+
T Consensus 221 ~v~~a~~ 227 (229)
T 2adc_A 221 RVSFSKS 227 (229)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999875
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=112.77 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcCCC-ceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFG-NIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~~G-~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
.+++++|||+ ||..+++++|+++|++|| .|.+++++.+. +|+|||+|.+.++|..|++.|+|..+. .|+.|+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~ 190 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLR 190 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEE
Confidence 3568999999 999999999999999999 99999987653 899999999999999999999999993 299999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|.|+.+
T Consensus 191 v~~a~~ 196 (198)
T 1qm9_A 191 VSFSKS 196 (198)
T ss_dssp EEEECC
T ss_pred EEeecc
Confidence 999875
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.5e-13 Score=116.32 Aligned_cols=79 Identities=24% Similarity=0.459 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 17 ~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
...+++++|||+ ||..+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|+|..+. .|+.|
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l 275 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT-QNNAM 275 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC-CCCEE
Confidence 345578999999 99999999999999999999999999774 699999999999999999999999993 29999
Q ss_pred EEEEcc
Q psy882 96 KVLIAA 101 (253)
Q Consensus 96 ~v~~a~ 101 (253)
+|.|++
T Consensus 276 ~v~~ak 281 (282)
T 3pgw_A 276 KISFAK 281 (282)
T ss_pred EEEEec
Confidence 999985
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=6e-14 Score=103.66 Aligned_cols=86 Identities=17% Similarity=0.370 Sum_probs=74.1
Q ss_pred CCCcEEEEE-c--CCCC---CHHHHHHhhcCCCceEEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 20 PPHSRLFIL-C--GKDV---TEDDLRQGFSPFGNIQEIRCVKDRN----TGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 20 ~~~~~lfv~-L--p~~~---te~~l~~~f~~~G~v~~i~i~~~~~----tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
+|+++|++. + |.++ .+++|++.|++||.|.+|+|++++. ++.++|++||+|.+.++|.+|++.|||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f- 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF- 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-
Confidence 378899998 6 4333 3689999999999999999999864 457789999999999999999999999999
Q ss_pred CCCCcEEEEEccccccCc
Q psy882 90 NHSKPIKVLIAAKLEFKE 107 (253)
Q Consensus 90 ~~g~~i~v~~a~~~~~~~ 107 (253)
.|+.|.|.++..+.|..
T Consensus 97 -~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 97 -AGRKVVAEVYDQERFDN 113 (118)
T ss_dssp -TTEECEEEEECHHHHHT
T ss_pred -CCcEEEEEEcChHhccc
Confidence 79999999998766644
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-13 Score=98.67 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCCCcEEEEE-cCCCCC-----------HHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy882 16 YNDEPPHSRLFIL-CGKDVT-----------EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~~t-----------e~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l 83 (253)
.....++++|+|. |..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|..|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 3445678999999 843332 5899999999999999955 554 37999999999999999999999
Q ss_pred CCcccCCCCCcEEEEEcccc
Q psy882 84 NGEFLPNHSKPIKVLIAAKL 103 (253)
Q Consensus 84 ~~~~~~~~g~~i~v~~a~~~ 103 (253)
||..+ .|+.|.|.++.+.
T Consensus 85 ng~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 85 DGRWF--GGRQITAQAWDGT 102 (112)
T ss_dssp TTCEE--TTEECEEEECCSC
T ss_pred CCCEE--CCcEEEEEEeCCC
Confidence 99999 6999999998873
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=2.1e-13 Score=114.45 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=78.6
Q ss_pred CCcccccCCCCCCCCCCCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy882 2 DRNYRINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80 (253)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai 80 (253)
++.+++.++. ++++|||+ ||..+++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|..|+
T Consensus 85 g~~l~v~~a~---------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 85 SRPLRIRFAT---------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp TEECEEEECC---------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CceeEeeecc---------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHH
Confidence 3555666553 46799999 99999999999999999999999999994 9999999999999999999999
Q ss_pred HHhCC-cccC-CCCCcEEEEEcccc
Q psy882 81 EEMNG-EFLP-NHSKPIKVLIAAKL 103 (253)
Q Consensus 81 ~~l~~-~~~~-~~g~~i~v~~a~~~ 103 (253)
..|++ ..+. +.+++|.|.++.+.
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEecCCCceEEEeecccc
Confidence 99954 4431 25899999999864
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=9.6e-14 Score=100.54 Aligned_cols=85 Identities=14% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCcEEEEE-c--CCCCC--------HHHHHHhhcCCCceEEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCc
Q psy882 20 PPHSRLFIL-C--GKDVT--------EDDLRQGFSPFGNIQEIRCVKDRNT--GESKGVAYIRFSKTSEAAKAVEEMNGE 86 (253)
Q Consensus 20 ~~~~~lfv~-L--p~~~t--------e~~l~~~f~~~G~v~~i~i~~~~~t--g~~~g~~fV~f~~~~~A~~ai~~l~~~ 86 (253)
.|++.|.+. + |.... +++|++.|++||.|.+|+|++++.+ +.++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467888887 5 44443 3689999999999999999998755 467999999999999999999999999
Q ss_pred ccCCCCCcEEEEEccccccC
Q psy882 87 FLPNHSKPIKVLIAAKLEFK 106 (253)
Q Consensus 87 ~~~~~g~~i~v~~a~~~~~~ 106 (253)
.+ .|+.|.|.++..+.|.
T Consensus 83 ~f--~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 83 KF--ANRVVVTKYCDPDSYH 100 (105)
T ss_dssp EE--TTEECEEEEECHHHHH
T ss_pred Ee--CCCEEEEEEeCHHHHh
Confidence 99 7999999998876554
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=1.7e-13 Score=111.05 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=69.2
Q ss_pred CCCcEEEEE-cCCCCCHHHHHHhhcCCCce--EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCC--CCc
Q psy882 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNI--QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH--SKP 94 (253)
Q Consensus 20 ~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v--~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~--g~~ 94 (253)
+|+++|||+ ||+.+++++|+++|++||.| .+++++.++ +.++|+|||+|.+.++|..|+..|||..+.+. ..+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 567899999 99999999999999999999 899998885 55679999999999999999999999998532 247
Q ss_pred EEEEEc
Q psy882 95 IKVLIA 100 (253)
Q Consensus 95 i~v~~a 100 (253)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 887775
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.6e-14 Score=102.04 Aligned_cols=71 Identities=18% Similarity=0.472 Sum_probs=63.0
Q ss_pred EE-cCCCCCHHHHHHhh------------cCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCC
Q psy882 27 IL-CGKDVTEDDLRQGF------------SPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93 (253)
Q Consensus 27 v~-Lp~~~te~~l~~~f------------~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~ 93 (253)
+. ||+.+++++|++.| ++||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 45 77777887777666 999999999999986 578999999999999999999999999999 799
Q ss_pred cEEEEEc
Q psy882 94 PIKVLIA 100 (253)
Q Consensus 94 ~i~v~~a 100 (253)
.|+|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 202
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.41 E-value=1.2e-13 Score=107.09 Aligned_cols=121 Identities=11% Similarity=-0.024 Sum_probs=83.2
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcE------EEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-h
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPM------VVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-L 183 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~ 183 (253)
.+|||||+|.+.++|++|+..+++.....|... ........ ..............++|.||+ .
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------HHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------CCSSCCCCCCBCCEEEEESCCTT
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------cccccccCCCCCCEEEEeCCCCC
Confidence 479999999999999999999886443133211 11111100 001111122344789999999 6
Q ss_pred HHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCC
Q psy882 184 AQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPK 241 (253)
Q Consensus 184 ~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~ 241 (253)
.++..|.. |..+ +.|..++..+|||||.| ... .+|++.|||..|+|++|+|.||++++
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 66666666 6555 34656678889998888 333 99999999999999999999999543
No 203
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.39 E-value=6e-14 Score=108.04 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=89.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhh-CCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHh
Q psy882 112 GQKISVQYTSPQSAAYARDKF-HGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSL 189 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l-~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l 189 (253)
+|+++|+|.+.++|++|+..| ||..+ .| .+.+.++...........................++|.||+ ..++..|
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~-~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGV-DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTC-CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCC-CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 789999999999999999999 99999 88 99999955321100000011111222233445789999999 6666666
Q ss_pred hh-hcCCCC--Chhh-hccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 190 LR-SAGLST--DSRF-ISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 190 ~~-~~~~~~--~~~~-~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
.. |..++. +..+ ...+|||||.| ... .+|++.|||..|+|++|+|+||+++
T Consensus 91 ~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 66 666633 1111 11479998888 333 9999999999999999999999954
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-12 Score=90.78 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=62.8
Q ss_pred CCcEEEEE-cC-------CCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 21 PHSRLFIL-CG-------KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 21 ~~~~lfv~-Lp-------~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
...+|-|. .+ ..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|+.|++.+++ + .+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g 79 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--L--VD 79 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--C--SS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--C--CC
Confidence 35667777 54 4689999999999999999999883 5699999999999999999987443 4 59
Q ss_pred CcEEEEEccccc
Q psy882 93 KPIKVLIAAKLE 104 (253)
Q Consensus 93 ~~i~v~~a~~~~ 104 (253)
++|+|.|+.+..
T Consensus 80 ~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 NPLKISWLEGQP 91 (100)
T ss_dssp SBCEEECSSCCC
T ss_pred CeEEEEEccCCC
Confidence 999999988643
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=7e-12 Score=108.70 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCCCcEEEEE-c--CCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCC-CCC
Q psy882 18 DEPPHSRLFIL-C--GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN-HSK 93 (253)
Q Consensus 18 ~~~~~~~lfv~-L--p~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~-~g~ 93 (253)
.+.|+++|||+ + +..+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+.. .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 46788999997 5 78999999999999999999987654 38999999999999999999999998732 355
Q ss_pred --cEEEEEccccccCc---CcccCcEEEE-EcCCHHHHHHHHHhhC
Q psy882 94 --PIKVLIAAKLEFKE---GYRGGQKISV-QYTSPQSAAYARDKFH 133 (253)
Q Consensus 94 --~i~v~~a~~~~~~~---~~v~~g~~fv-~f~~~~~A~~A~~~l~ 133 (253)
.|.|.++..-.... ..+..|.-++ .|-+.+++..-++.+.
T Consensus 88 ~~~ly~~~~~~~~~~~~~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 88 KITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp EEECEEEECSSEEEEEEECCSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred ceEEEEEEeecccccccccccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 67888875422211 2223554444 5677888776555544
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=1.1e-11 Score=90.90 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCcEEEEE-c--CCCC--------CHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 21 PHSRLFIL-C--GKDV--------TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 21 ~~~~lfv~-L--p~~~--------te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
+++.|.+. + |... .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 56777777 4 3321 125789999999999999987662 489999999999999999999999999
Q ss_pred CCCCcEEEEEccccccC
Q psy882 90 NHSKPIKVLIAAKLEFK 106 (253)
Q Consensus 90 ~~g~~i~v~~a~~~~~~ 106 (253)
.|+.|.|.++..+.|.
T Consensus 81 -~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 81 -AGKMITAAYVPLPTYH 96 (114)
T ss_dssp -TTEECEEEEECHHHHH
T ss_pred -CCEEEEEEEEcHHHHH
Confidence 7999999999875553
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=80.56 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=66.3
Q ss_pred CCCCCcEEEEE-cC----CCCCH----HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCccc
Q psy882 18 DEPPHSRLFIL-CG----KDVTE----DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp----~~~te----~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~ 88 (253)
.-||..+|+|. .| .++.+ .+|.+.|++||.|..++++.++ +||+|.+.+.|.+|++ |+|..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 45788999999 87 35555 6788999999999999999984 8999999999999998 999999
Q ss_pred CCCCCcEEEEEcccc
Q psy882 89 PNHSKPIKVLIAAKL 103 (253)
Q Consensus 89 ~~~g~~i~v~~a~~~ 103 (253)
.|+.|+|+.+.++
T Consensus 74 --~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 --LNRTITIALKSPS 86 (91)
T ss_dssp --TTEEEEEEECCCS
T ss_pred --CCeEEEEEeCCCC
Confidence 7999999998864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.7e-09 Score=79.47 Aligned_cols=79 Identities=23% Similarity=0.190 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEEE-cCCC-CCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHhC--CcccCC
Q psy882 16 YNDEPPHSRLFIL-CGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK-TSEAAKAVEEMN--GEFLPN 90 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~-~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~-~~~A~~ai~~l~--~~~~~~ 90 (253)
+-.-++++.|||+ |+.. +++++|+++|++||+|.+|.++++.. .|||.|.+ ..+|..|+..|+ +..+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i-- 83 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL-- 83 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT--
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE--
Confidence 4456789999999 9999 99999999999999999999998853 59999999 899999999995 5556
Q ss_pred CCCcEEEEEccc
Q psy882 91 HSKPIKVLIAAK 102 (253)
Q Consensus 91 ~g~~i~v~~a~~ 102 (253)
++..++++....
T Consensus 84 ~g~~~~~evL~G 95 (121)
T 1owx_A 84 RNKEVTWEVLEG 95 (121)
T ss_dssp TSSSEEEEECCH
T ss_pred eCcEEEEEECCC
Confidence 788888877654
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.01 E-value=1.4e-10 Score=87.52 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=57.7
Q ss_pred EEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-
Q psy882 114 KISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR- 191 (253)
Q Consensus 114 ~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~- 191 (253)
+.|++|.+...|..|+..|+|... .|+. ...+. ...........++|.||+ .+.+..|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~-~g~~-~~~~~----------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~ 67 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQ-MGRG-SMSYG----------------RPPPDVEGMTSLKVDNLTYRTSPDTLRRV 67 (135)
T ss_dssp -------------------------------CCSC----------------CSCSSGGGCCCEEEECCCSSCHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCC-CCCC-CCCcC----------------CCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 578899999999999999988765 4432 11121 112223344679999999 666666666
Q ss_pred hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCC
Q psy882 192 SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKG 242 (253)
Q Consensus 192 ~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~ 242 (253)
|..+ +.+..++..+|||||.+ ... ++|++.|||..|+|++|+|.||++++.
T Consensus 68 F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 68 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 6666 33555567779998888 333 999999999999999999999995443
No 210
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.4e-09 Score=88.78 Aligned_cols=74 Identities=19% Similarity=0.391 Sum_probs=64.8
Q ss_pred CCCHHHHHHhhcCCCceEEEEEeecC----CCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEEEEEccccccCc
Q psy882 32 DVTEDDLRQGFSPFGNIQEIRCVKDR----NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKE 107 (253)
Q Consensus 32 ~~te~~l~~~f~~~G~v~~i~i~~~~----~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~~~ 107 (253)
.-.+++|++.|++||.|.++.|+++. .++.++|++||+|.+.++|.+|++.|+|..+ .||.|.|.++..+.|..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVYDQERFDN 217 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--CCeEEEEEEcCHHHhhh
Confidence 34568899999999999999998654 3458999999999999999999999999999 79999999998766644
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.5e-09 Score=75.55 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCCCCCCcEEEEE-cCCC-----CCH----HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 16 YNDEPPHSRLFIL-CGKD-----VTE----DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 16 ~~~~~~~~~lfv~-Lp~~-----~te----~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
...-||..+|+|. ++.. +.+ .+|.+.|++||.|..++++.++ +||+|.+.+.|.+||+ |+|
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 3456888999999 8743 444 5688999999999999999994 9999999999999998 999
Q ss_pred cccCCCCCcEEEEEcc
Q psy882 86 EFLPNHSKPIKVLIAA 101 (253)
Q Consensus 86 ~~~~~~g~~i~v~~a~ 101 (253)
..+ .|+.|+|.+-.
T Consensus 80 ~~v--~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKV--KGRAVKISGPS 93 (95)
T ss_dssp SEE--TTEEEEEECCC
T ss_pred eee--CCeEEEEeccC
Confidence 999 69999998754
No 212
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.88 E-value=6e-10 Score=86.88 Aligned_cols=126 Identities=13% Similarity=-0.013 Sum_probs=56.3
Q ss_pred EEcCCHHHHHHHHHhhCCCcCC-CCCcEEEEecCCCCCCCCCCC---CCC-CCcccccccccccccccchh-hHHHHHhh
Q psy882 117 VQYTSPQSAAYARDKFHGFAYP-PGIPMVVVPDFSYGLPRNGAS---ALG-GNAALSVVDSKGALQSLTKA-LAQATSLL 190 (253)
Q Consensus 117 v~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~v~n~~-~~~~~~l~ 190 (253)
.+|.+.++|+.|+..|++.... .|+.....++........... ... .............++|.||+ .+.+..|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5789999999999999986652 367777766322100000000 000 11112223345779999999 66666677
Q ss_pred h-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 191 R-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 191 ~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
. |..|+. +..++..+|||||.| ... .+||..|||..|+|++|.|.||. ++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~-~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF-VKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE-ECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec-CCCC
Confidence 6 777643 445566779998888 333 99999999999999999999999 4444
No 213
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.87 E-value=7.5e-10 Score=78.95 Aligned_cols=67 Identities=18% Similarity=0.058 Sum_probs=55.1
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
+..++|.||| +.++..|.. |..++. |..++..+|||||.+ ... .+|++.|||..|+|++|+|+||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak- 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR- 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee-
Confidence 3569999999 777777777 877743 556677789998888 333 99999999999999999999998
Q ss_pred C
Q psy882 240 P 240 (253)
Q Consensus 240 p 240 (253)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 214
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.70 E-value=5.6e-09 Score=75.88 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=56.8
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
...++|.||+ .+++..|.. |..|+. |..++..+|||||.+ ... .+|++.|||..|+|++|+|.+|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~- 84 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI- 84 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS-
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC-
Confidence 3579999999 777777777 887743 666677889999988 333 99999999999999999999997
Q ss_pred CCCc
Q psy882 240 PKGD 243 (253)
Q Consensus 240 p~~~ 243 (253)
++..
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 4433
No 215
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=3e-08 Score=70.61 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=56.1
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ..++..|.. |..+. .+..++..++||||.+ ... .+|++.|||..|+|++|+|.||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 445789999999 666666777 77762 3445566779998888 333 9999999999999999999999
Q ss_pred CCCCC
Q psy882 238 DPPKG 242 (253)
Q Consensus 238 ~~p~~ 242 (253)
++++.
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 94433
No 216
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.67 E-value=8.3e-09 Score=72.93 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=53.2
Q ss_pred ccccccchh-hHHHHHhhh-hcCCC----------CChhhhccccchhhhh-H--HHHHHHHHhcCc----eecCeEEEE
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLS----------TDSRFISRLRLDDFIY-Y--ILVEFSQTLHGA----EMYGSRLKV 234 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~----------~~~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~----~i~G~~l~v 234 (253)
..++|.||+ .++++.|.+ |..|+ .|..++..+|||||.+ . ...+|++.|||. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 569999999 777777777 77774 2556677789999888 3 339999999997 599999999
Q ss_pred EecC
Q psy882 235 MEAD 238 (253)
Q Consensus 235 ~~a~ 238 (253)
+||+
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9998
No 217
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.66 E-value=4.2e-09 Score=94.53 Aligned_cols=67 Identities=13% Similarity=-0.060 Sum_probs=53.3
Q ss_pred cccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
...|||.||+ .+++..|.. |..|+ .+..++..+|||||.| ... .+||..|||..|+|++|.|.||.+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 3579999999 666666666 66663 2445566789999988 333 999999999999999999999993
No 218
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.65 E-value=1.6e-08 Score=69.13 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=54.0
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
..++|.||| ...+..|.. |..++. +..++...|||||.+ ... .+|++.|||..|+|++|+|.||+ |
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~-~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA-K 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC-C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC-c
Confidence 468899999 666777777 777743 445566779998888 333 99999999999999999999999 5
Q ss_pred CC
Q psy882 241 KG 242 (253)
Q Consensus 241 ~~ 242 (253)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 219
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.61 E-value=7.3e-09 Score=72.26 Aligned_cols=68 Identities=12% Similarity=-0.055 Sum_probs=50.1
Q ss_pred ccccccchh-hHHHHHhhh-hcCCC--C--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLS--T--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~--~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
..++|.||+ +..+..|.. |..++ . |..++..+|||||.+ ... ++|++.|||..|+|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 358899999 666666666 66665 2 545667779998888 333 99999999999999999999999
Q ss_pred CCC
Q psy882 239 PPK 241 (253)
Q Consensus 239 ~p~ 241 (253)
+|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 220
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.61 E-value=1e-08 Score=71.81 Aligned_cols=69 Identities=9% Similarity=0.074 Sum_probs=51.5
Q ss_pred ccccccchh-hHHHHHhhh-hcCC---------CCChhhhccccchhhhh-HHH--HHHHHHh-cCceecCeEEEEEecC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGL---------STDSRFISRLRLDDFIY-YIL--VEFSQTL-HGAEMYGSRLKVMEAD 238 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~---------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~l-nG~~i~G~~l~v~~a~ 238 (253)
..++|.||| ++++..|.. |..+ +.|..++..+|||||.+ ... .+|++.| ||..|+|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 358999999 666666666 5544 23556677789998888 333 8899887 5678999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+..
T Consensus 82 -~~~~ 85 (91)
T 2lxi_A 82 -PKPK 85 (91)
T ss_dssp -SCCC
T ss_pred -CCCC
Confidence 5443
No 221
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=4.9e-08 Score=68.32 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=55.2
Q ss_pred cccccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEE
Q psy882 169 VVDSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVM 235 (253)
Q Consensus 169 ~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~ 235 (253)
.+.....++|.||| ...+..|.. |..+. .+..++...+||||.+ ... .+|++.|||..|+|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34455789999999 677777777 77773 3555566779998888 333 99999999999999999999
Q ss_pred ecC
Q psy882 236 EAD 238 (253)
Q Consensus 236 ~a~ 238 (253)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 222
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.59 E-value=5.9e-08 Score=70.68 Aligned_cols=71 Identities=18% Similarity=0.085 Sum_probs=55.4
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ++.+..|.. |..+.. +..++..++||||.| ... ++|++.|||..|+|++|+|.||+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 44789999999 666666776 776632 444566679998888 333 99999999999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+..
T Consensus 104 -~~~~ 107 (115)
T 2cpz_A 104 -SKND 107 (115)
T ss_dssp -CSCC
T ss_pred -CCCc
Confidence 5554
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-08 Score=70.34 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=56.4
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC-----CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS-----TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~-----~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
.....++|.||+ .+.+..|.. |..+. .+..++..++||||.| ... .+|++.|||..|+|++|+|.||+ |
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~-~ 91 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK-P 91 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-C
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec-C
Confidence 345779999999 677777777 77762 2444456679998888 333 99999999999999999999999 6
Q ss_pred CCc
Q psy882 241 KGD 243 (253)
Q Consensus 241 ~~~ 243 (253)
+.+
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 555
No 224
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=6.2e-08 Score=69.98 Aligned_cols=73 Identities=11% Similarity=-0.022 Sum_probs=57.7
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhc------CceecCe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLH------GAEMYGS 230 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~ln------G~~i~G~ 230 (253)
......++|.||+ .+.+..|.. |..++ .+..++..+|||||.| ... .+|++.|| |..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3345779999999 677777777 77763 3555567789998888 333 99999999 9999999
Q ss_pred EEEEEecCCCCCc
Q psy882 231 RLKVMEADPPKGD 243 (253)
Q Consensus 231 ~l~v~~a~~p~~~ 243 (253)
+|+|.||. |+.+
T Consensus 92 ~l~v~~a~-~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAV-TRDE 103 (111)
T ss_dssp EEEEECCC-CCCC
T ss_pred EEEEEECC-CCcc
Confidence 99999999 6655
No 225
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=5.9e-08 Score=68.65 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=55.3
Q ss_pred cccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
...++|.||+ ...+..|.. |..+. .+..++...+||||.+ ... .+|++.|||..|.|++|+|.+|+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~- 86 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST- 86 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC-
Confidence 3679999999 666666776 77663 3555667779998888 333 99999999999999999999999
Q ss_pred CCCc
Q psy882 240 PKGD 243 (253)
Q Consensus 240 p~~~ 243 (253)
|+..
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 5444
No 226
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.55 E-value=4.2e-08 Score=70.88 Aligned_cols=71 Identities=14% Similarity=-0.004 Sum_probs=56.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..++. +..++..+|||||.+ ... .+|++.|||..|+|++|+|++|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 344779999999 666666777 877743 445566779998888 333 9999999999999999999999
Q ss_pred CCCCC
Q psy882 238 DPPKG 242 (253)
Q Consensus 238 ~~p~~ 242 (253)
+ |+.
T Consensus 104 ~-~k~ 107 (108)
T 2jrs_A 104 T-ERT 107 (108)
T ss_dssp C-SSC
T ss_pred c-cCC
Confidence 9 554
No 227
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=5e-08 Score=69.81 Aligned_cols=72 Identities=8% Similarity=-0.041 Sum_probs=56.3
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......++|.||+ .+.+..|.. |..+. .+..++..+|||||.+ ... .+|++.|||..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3445789999999 666666777 77773 2444567779998888 333 999999999999999999999
Q ss_pred cCCCC
Q psy882 237 ADPPK 241 (253)
Q Consensus 237 a~~p~ 241 (253)
|++++
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 99443
No 228
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.55 E-value=8e-08 Score=69.92 Aligned_cols=72 Identities=10% Similarity=-0.074 Sum_probs=55.7
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..++. +..++..+|||||.| ... ++|++.|||..|+|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345789999999 666666776 776633 444566679998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ ++..
T Consensus 93 ~-~~~~ 97 (115)
T 2dgo_A 93 T-RKPP 97 (115)
T ss_dssp S-CCCC
T ss_pred c-CCCC
Confidence 9 4444
No 229
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.54 E-value=6.1e-08 Score=70.76 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=36.7
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
++|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~-~g~~i~V~~a~~ 82 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS 82 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEE-TTEECEEEESSC
T ss_pred CCceEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEECCC
Confidence 589999999999999999999999999 999999999654
No 230
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=8.4e-08 Score=68.40 Aligned_cols=72 Identities=13% Similarity=0.028 Sum_probs=56.6
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ .+.+..|.. |..+.. +..++..+|||||.| ... .+|++.|||..|+|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 345779999999 777777777 877743 444556679998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ |+..
T Consensus 93 ~-~~~~ 97 (103)
T 2cq0_A 93 K-PSTN 97 (103)
T ss_dssp S-CCCC
T ss_pred C-CCCC
Confidence 9 5444
No 231
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=6.9e-08 Score=67.49 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=53.6
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcC-ceecCeEEEEEecCCCCCc
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHG-AEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG-~~i~G~~l~v~~a~~p~~~ 243 (253)
...++|.||+ +.++..|.. |..+.. ....-...+||||.+ ... ++|++.||| ..|+|++|+|.||+ |+..
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~-~~~~ 85 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV-SKKL 85 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC-CCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc-Cccc
Confidence 3578999999 666666776 776643 222234569998888 333 999999999 99999999999999 6555
No 232
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.52 E-value=5.1e-08 Score=66.87 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=53.1
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||| +..+..|.. |..++. +..++...|||||.+ ... .+|++.|||..|+|++|+|+||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34679999999 666666777 776632 445566789998888 333 99999999999999999999985
No 233
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.52 E-value=4e-08 Score=67.71 Aligned_cols=66 Identities=9% Similarity=-0.077 Sum_probs=52.8
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
...++|.||+ ...+..|.. |..++. +..++...|||||.+ ... .+|++.|||..|+|++|+|.||+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3678999999 666666777 776633 445566779998888 333 99999999999999999999999
No 234
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.51 E-value=5.2e-08 Score=67.20 Aligned_cols=68 Identities=4% Similarity=-0.009 Sum_probs=52.8
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhc-cccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFIS-RLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~-~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
..++|.||+ +..+..|.. |..++. +..++. ..|||||.+ ... .+|++.|||..|+|++|+|+++.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 468999999 666666777 777743 333333 679998888 333 999999999999999999999996
Q ss_pred CC
Q psy882 240 PK 241 (253)
Q Consensus 240 p~ 241 (253)
|+
T Consensus 85 ~~ 86 (88)
T 4a8x_A 85 PW 86 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 235
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.51 E-value=6.5e-08 Score=69.06 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=53.4
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLSTDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKG 242 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~ 242 (253)
...++|.||+ ++++..|.. |..+..-..+.-..+||||.+ ... .+|++.|||..|.|++|+|.||+++..
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4679999999 667777777 777754333334468998888 333 999999999999999999999995433
No 236
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.51 E-value=5.4e-08 Score=70.29 Aligned_cols=72 Identities=19% Similarity=0.065 Sum_probs=56.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..++ .+..++...|||||.+ ... .+|+..|||..|+|++|+|.||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 344779999999 666666666 76663 3555667789998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ |+..
T Consensus 104 ~-~~~~ 108 (110)
T 1oo0_B 104 F-VKGP 108 (110)
T ss_dssp E-ESSC
T ss_pred c-cCCC
Confidence 9 5444
No 237
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.51 E-value=7.8e-08 Score=67.68 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=53.6
Q ss_pred ccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
..++|.||+ ...+..|.. |..++ .+..++...|||||.+ ... .+|++.|||..|+|++|+|.||+ |
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~-~ 81 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS-N 81 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS-C
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC-C
Confidence 468999999 666666776 77663 2545567789998888 333 99999999999999999999999 4
Q ss_pred CC
Q psy882 241 KG 242 (253)
Q Consensus 241 ~~ 242 (253)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 238
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=9.4e-08 Score=67.61 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=55.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ .+.+..|.. |..+. .+..++...|||||.| ... .+|++ |||..|+|++|+|.+|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 34679999999 667777777 77773 3555567789998888 333 99998 99999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+..
T Consensus 88 -~~~~ 91 (99)
T 2dgs_A 88 -PRDS 91 (99)
T ss_dssp -CCCC
T ss_pred -CCcc
Confidence 5555
No 239
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=67.82 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=56.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh---HHHHHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY---YILVEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~---~~~~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ .+.+..|.. |..+.. +..++...+||||.+ ....+|++.|||..|+|++|+|.+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 44779999999 667777777 777732 445566779998888 33399999999999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
+++..
T Consensus 92 ~~~~~ 96 (103)
T 2dnm_A 92 YGRRD 96 (103)
T ss_dssp SCCSC
T ss_pred cCCCC
Confidence 54433
No 240
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1e-07 Score=66.99 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=53.7
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC---------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST---------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~---------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
...++|.||+ ...+..|.. |..+.. +..++...+||||.+ ... .+|++.|||..|+|++|+|.||+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 3678999999 666666666 666632 334455679998888 333 99999999999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+..
T Consensus 85 -~~~~ 88 (96)
T 1x5t_A 85 -KKDS 88 (96)
T ss_dssp -CCCC
T ss_pred -ccCC
Confidence 5444
No 241
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.3e-07 Score=66.97 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=53.9
Q ss_pred cccccccchh-hHHHHHhhh-hcCC--CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGL--STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPK 241 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~--~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~ 241 (253)
...++|.||+ .+++..|.. |..+ ..-..+....+||||.+ ... .+|+..|||..|+|++|+|.||++++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 4679999999 677777777 8888 44333344568998888 333 99999999999999999999999433
No 242
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=2.1e-07 Score=65.99 Aligned_cols=69 Identities=10% Similarity=0.014 Sum_probs=54.8
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC-----CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS-----TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~-----~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
.....++|.||+ +..+..|.. |..+. .+ ..+..++||||.+ ... .+|++.|||..|.|++|+|.||+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345789999999 777777777 77763 23 4456779998888 333 9999999999999999999999943
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.1e-07 Score=68.47 Aligned_cols=71 Identities=7% Similarity=-0.038 Sum_probs=52.9
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCceecC-----eEEEEEecCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYG-----SRLKVMEADP 239 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G-----~~l~v~~a~~ 239 (253)
....++|.||+ ++++..|.. |..+.. +..+... +||||.+ ... ++||+.|||.+|.| ++|+|.+|++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 45789999999 677777777 777743 1111111 8998888 333 99999999999999 9999999995
Q ss_pred CCCc
Q psy882 240 PKGD 243 (253)
Q Consensus 240 p~~~ 243 (253)
+...
T Consensus 93 ~~~~ 96 (108)
T 1x4c_A 93 RSPS 96 (108)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 4444
No 244
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1e-07 Score=66.79 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=54.4
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
+.....++|.||+ ...+..|.. |..++. +..++...+||||.+ ... .+|++.|||..|+|++|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3445789999999 666666777 777743 444456679998888 333 999999999999999999999
Q ss_pred cC
Q psy882 237 AD 238 (253)
Q Consensus 237 a~ 238 (253)
|+
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 98
No 245
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.48 E-value=9.6e-08 Score=65.95 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=35.7
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
+||||||+|.+.++|.+|++.||+..+ .|++|+|.++
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l-~gr~I~V~~A 78 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVL-ANTTIFAESP 78 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEE-CCcEEEEEEC
Confidence 599999999999999999999999999 9999999995
No 246
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1e-07 Score=67.20 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=53.6
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||| .+.+..|.. |..+.. +..++..+|||||.+ ... ++|++.|||..|+|++|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34679999999 666666777 777633 333445679998888 333 99999999999999999999998
Q ss_pred CC
Q psy882 239 PP 240 (253)
Q Consensus 239 ~p 240 (253)
.|
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 247
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.48 E-value=6e-08 Score=70.10 Aligned_cols=70 Identities=11% Similarity=-0.011 Sum_probs=55.7
Q ss_pred ccccccchh-h-HHHHHhhh-hcCCCCChhhhccccchhhhh-HH--HHHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 174 GALQSLTKA-L-AQATSLLR-SAGLSTDSRFISRLRLDDFIY-YI--LVEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 174 ~~~~v~n~~-~-~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~--~~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
..++|.||+ . ..+..|.. |..+..-..+.-.++||||.+ .. ..+|++.|||..|+|++|+|.||++|+..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 579999999 6 78888888 888754322223679998888 33 39999999999999999999999976665
No 248
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.47 E-value=5.3e-08 Score=69.25 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=52.1
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCce--ecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAE--MYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~--i~G~~l~v~~a~ 238 (253)
...++|.||| ++++..|.. |.+|+. +......+|||||.+ ... .+|++.|||.. |.|++|.|+||+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 3679999999 777777787 888865 233334569998888 333 99999999986 789999999999
No 249
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=4.9e-08 Score=69.48 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=54.4
Q ss_pred cccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ +..+..|.. |..+ ..+..++...+||||.+ ... .+|++.|||..|+|++|+|.||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 344679999999 666666666 5544 33555566779998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ ++..
T Consensus 90 ~-~~~~ 94 (102)
T 1x5s_A 90 G-KSSD 94 (102)
T ss_dssp E-CCCC
T ss_pred C-CCCC
Confidence 9 4444
No 250
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=67.40 Aligned_cols=69 Identities=12% Similarity=-0.049 Sum_probs=55.0
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..+.. + .+...+||||.| ... .+|++.|||..|+|++|+|.||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44679999999 677777777 887743 3 346679998888 333 99999999999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+.+
T Consensus 92 -~~~~ 95 (103)
T 2d9p_A 92 -RKEE 95 (103)
T ss_dssp -SCCC
T ss_pred -cccc
Confidence 5555
No 251
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2e-07 Score=65.98 Aligned_cols=69 Identities=13% Similarity=-0.003 Sum_probs=54.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..++. +. .+..++||||.+ ... .+|++.|||..|+|++|+|.||+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34679999999 667777777 777743 33 456679998888 333 99999999999999999999999
Q ss_pred CCCC
Q psy882 239 PPKG 242 (253)
Q Consensus 239 ~p~~ 242 (253)
|+.
T Consensus 95 -~~~ 97 (100)
T 2do4_A 95 -SGP 97 (100)
T ss_dssp -CCS
T ss_pred -CCC
Confidence 444
No 252
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.8e-07 Score=66.80 Aligned_cols=72 Identities=17% Similarity=0.037 Sum_probs=54.9
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC----------------Chhhhccccchhhhh-HHH--HHHHHHhcCceecC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST----------------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYG 229 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~----------------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G 229 (253)
.....++|.||+ .+.+..|.. |..+.. +..++..+|||||.| ... .+|++.|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 344779999999 666666766 666632 224455679998888 333 99999999999999
Q ss_pred eEEEEEecCCCCCc
Q psy882 230 SRLKVMEADPPKGD 243 (253)
Q Consensus 230 ~~l~v~~a~~p~~~ 243 (253)
++|+|.+|+ ++..
T Consensus 93 ~~l~V~~a~-~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLAR-KKPP 105 (113)
T ss_dssp EECEEECSS-CCCC
T ss_pred CEEEEEECC-CCCC
Confidence 999999999 5444
No 253
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=2.8e-07 Score=66.37 Aligned_cols=70 Identities=7% Similarity=-0.118 Sum_probs=52.7
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCCC--h---hhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLSTD--S---RFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~~--~---~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
.....++|.||+ ++++..|.. |..+..- . .....++||||.| ... .+|++.|||..|+|++|+|.||+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 345789999999 667777777 7777431 1 1123468998888 333 9999999999999999999999943
No 254
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.44 E-value=9.7e-08 Score=67.20 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=52.1
Q ss_pred cccccccchh-hHHHHHhh----h-hcCCCC--C---hhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLL----R-SAGLST--D---SRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~----~-~~~~~~--~---~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
...++|.||+ ...+..|. . |..++. + ..++..+|||||.+ ... .+|++.|||..|+|++|+|.||+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 4678999999 55565555 5 666643 1 13345679998888 333 99999999999999999999999
Q ss_pred CCCC
Q psy882 239 PPKG 242 (253)
Q Consensus 239 ~p~~ 242 (253)
++.+
T Consensus 88 ~~~~ 91 (97)
T 1nu4_A 88 TDSD 91 (97)
T ss_dssp SCCT
T ss_pred CCCc
Confidence 4433
No 255
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.43 E-value=1.2e-07 Score=67.52 Aligned_cols=70 Identities=14% Similarity=-0.064 Sum_probs=54.4
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC-------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS-------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~-------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
....++|.||+ .+.+..|.. |..+. .+..++..+|||||.| ... .+|+ .|||..|+|++|+|.+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~- 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE- 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC-
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec-
Confidence 34789999999 777777777 77772 2444556679998888 333 8999 899999999999999999
Q ss_pred CCCc
Q psy882 240 PKGD 243 (253)
Q Consensus 240 p~~~ 243 (253)
|+..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4444
No 256
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=2e-07 Score=66.75 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=56.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------C-hhhhccccchhhhh-HHH--HHHHHHh-cCceecCeEEEEE
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------D-SRFISRLRLDDFIY-YIL--VEFSQTL-HGAEMYGSRLKVM 235 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~-~~~~~~~~fg~v~~-~~~--~~Ai~~l-nG~~i~G~~l~v~ 235 (253)
.....++|.||+ ...+..|.. |..+.. + ...+...+||||.| ... .+|++.| ||..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 344779999999 666666777 777632 4 44566789998888 333 9999999 9999999999999
Q ss_pred ecCCCCCc
Q psy882 236 EADPPKGD 243 (253)
Q Consensus 236 ~a~~p~~~ 243 (253)
||+ |+..
T Consensus 93 ~a~-~~~~ 99 (107)
T 2cph_A 93 WAD-SEVT 99 (107)
T ss_dssp ECC-CCCC
T ss_pred eCC-CCCC
Confidence 999 5544
No 257
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=3.2e-07 Score=65.49 Aligned_cols=69 Identities=13% Similarity=0.005 Sum_probs=53.9
Q ss_pred cccccccchh-hHHHHHhhh-hcCCC-------CChhh-hccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLS-------TDSRF-ISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~-------~~~~~-~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
...++|.||+ .+.+..|.. |..+. .+..+ +..+|||||.| ... .+|+ .|||..|+|++|+|.+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~- 92 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVAD- 92 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECC-
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEcc-
Confidence 3789999999 667777777 77663 24443 56679998888 333 9999 999999999999999999
Q ss_pred CCCc
Q psy882 240 PKGD 243 (253)
Q Consensus 240 p~~~ 243 (253)
|+.+
T Consensus 93 ~~~~ 96 (104)
T 1wi8_A 93 QAQD 96 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5554
No 258
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.42 E-value=1.1e-07 Score=70.95 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=55.8
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
+.....++|.||+ +.++..|.. |..++. +..++..+|||||.| ... ++|++.|||..|+|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445789999999 666667777 777743 445567779998888 333 999999999999999999999
Q ss_pred cCC
Q psy882 237 ADP 239 (253)
Q Consensus 237 a~~ 239 (253)
|++
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 993
No 259
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.3e-07 Score=65.41 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=51.8
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC---CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS---TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~---~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
....++|.||+ ...+..|.. |..++ ....++...|||||.+ ... .+|++.|||..|+|++|+|.+|++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34679999999 666666666 65553 2333345569998888 333 999999999999999999999993
No 260
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=8e-08 Score=68.84 Aligned_cols=70 Identities=16% Similarity=0.012 Sum_probs=55.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..++. +..++..+|||||.+ ... .+|++.|||..|+|++|+|.||+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34679999999 666666777 777633 555567789998888 333 99999999999999999999998
Q ss_pred CCCC
Q psy882 239 PPKG 242 (253)
Q Consensus 239 ~p~~ 242 (253)
|+.
T Consensus 102 -~~~ 104 (106)
T 1p27_B 102 -VRG 104 (106)
T ss_dssp -ESS
T ss_pred -CCC
Confidence 443
No 261
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.40 E-value=8.4e-08 Score=69.69 Aligned_cols=71 Identities=17% Similarity=0.017 Sum_probs=51.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC-C--Chh--hhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS-T--DSR--FISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPK 241 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~-~--~~~--~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~ 241 (253)
....++|.||+ ++++..|.. |..++ . ... .....|||||.+ ... ++||+.|||.+|+|++|+|.++..|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 44789999999 666666666 65554 1 111 124579998888 333 99999999999999999999998554
Q ss_pred C
Q psy882 242 G 242 (253)
Q Consensus 242 ~ 242 (253)
.
T Consensus 107 ~ 107 (111)
T 2jvr_A 107 P 107 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 262
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=5.6e-08 Score=69.79 Aligned_cols=71 Identities=3% Similarity=-0.082 Sum_probs=53.4
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhc--CceecCeEEEEEecCCCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLH--GAEMYGSRLKVMEADPPKG 242 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~ln--G~~i~G~~l~v~~a~~p~~ 242 (253)
....++|.||+ ++++..|.. |..|+. +..+...+|||||.+ ... ++|++.|+ |.+|.|++|+|.||+ +++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~-~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN-HKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC-CCC
Confidence 34679999999 777777777 777754 222223369998888 433 99999886 479999999999999 555
Q ss_pred c
Q psy882 243 D 243 (253)
Q Consensus 243 ~ 243 (253)
.
T Consensus 94 ~ 94 (105)
T 1sjq_A 94 L 94 (105)
T ss_dssp C
T ss_pred C
Confidence 4
No 263
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.39 E-value=1.1e-07 Score=70.26 Aligned_cols=68 Identities=15% Similarity=-0.039 Sum_probs=54.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ .+++..|.. |..++ .+..++...|||||.| ... .+|++.|||..|+|++|+|.||.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 34689999999 666666666 77663 3545666789998888 333 99999999999999999999998
Q ss_pred C
Q psy882 239 P 239 (253)
Q Consensus 239 ~ 239 (253)
+
T Consensus 101 ~ 101 (126)
T 3ex7_B 101 V 101 (126)
T ss_dssp E
T ss_pred C
Confidence 3
No 264
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.39 E-value=2.3e-07 Score=67.74 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=54.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HH--HHHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YI--LVEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~--~~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ +..+..|.. |..++ .+..++..+|||||.| .. .++|++.|||..|+|++|+|.||
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 344789999999 777777777 77773 3555567789998888 33 39999999999999999999998
Q ss_pred C
Q psy882 238 D 238 (253)
Q Consensus 238 ~ 238 (253)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 265
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.38 E-value=2.1e-07 Score=67.16 Aligned_cols=71 Identities=11% Similarity=-0.010 Sum_probs=54.0
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCCCCc
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLSTDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p~~~ 243 (253)
....++|.||+ ...+..|.. |..++.-..+.-..|||||.+ ... ++|++.|||..|+|++|+|.||+ ++..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~-~~~~ 105 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK-LPAK 105 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS-CCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec-CCCC
Confidence 34679999999 667777777 888854322223379998888 333 99999999999999999999999 4433
No 266
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=6.2e-07 Score=63.56 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=37.3
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVI-CGSRVRVELSTGM 75 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCS-SSCCCEEEESSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeE-CCcEEEEEEccCC
Confidence 689999999999999999999999999 9999999997654
No 267
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=3e-07 Score=64.07 Aligned_cols=68 Identities=13% Similarity=-0.014 Sum_probs=53.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLSTDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
....++|.||+ ..++..|.. |..+..-..+.-..+||||.+ ... .+|++.|||..|.|++|+|.||++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 34679999999 677777777 888865333334457998888 333 999999999999999999999994
No 268
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=3.1e-07 Score=63.87 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=53.0
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC-------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST-------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~-------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
....++|.||| .+.+..|.. |..+.. + ..+...|||||.+ ... .+|++ |||..|+|++|+|.+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~- 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK- 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES-
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC-
Confidence 34679999999 677777777 777621 3 4456679998888 333 99999 99999999999999999
Q ss_pred CCC
Q psy882 240 PKG 242 (253)
Q Consensus 240 p~~ 242 (253)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 443
No 269
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=5e-07 Score=64.28 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=53.8
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..+.. +.. ...+||||.| ... .+|++.|||..|+|++|+|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 344779999999 677777777 777743 222 2568998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ |+..
T Consensus 91 ~-~~~~ 95 (103)
T 2cq3_A 91 T-ARVM 95 (103)
T ss_dssp C-SSCC
T ss_pred c-cCCC
Confidence 9 4444
No 270
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.36 E-value=2.3e-07 Score=71.30 Aligned_cols=72 Identities=7% Similarity=-0.074 Sum_probs=56.5
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....|+|.||+ .+++..|.. |..+.. +..++..++||||.| ... ++||+.|||..|.|++|+|.||+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34679999999 666666777 777633 545566779998888 333 99999999999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
+++..
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 65554
No 271
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=5.8e-08 Score=69.28 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=54.1
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
..++|.||+ ...+..|.. |..++. +..++...|||||.+ ... .+|++.|||..|+|++|+|.||. +
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~-~ 87 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA-S 87 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT-C
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC-C
Confidence 578999999 666666777 777733 334556679998888 333 99999999999999999999999 5
Q ss_pred CCc
Q psy882 241 KGD 243 (253)
Q Consensus 241 ~~~ 243 (253)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 544
No 272
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.1e-07 Score=67.54 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=53.0
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..++. +..+...+|||||.+ ... .+|+..|||..|+|++|+|.||+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34679999999 666777777 777744 333335679998888 333 99999999999999999999998
No 273
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=2.5e-07 Score=67.91 Aligned_cols=71 Identities=3% Similarity=-0.075 Sum_probs=54.7
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcC--ceecCeEEEEEecCCCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHG--AEMYGSRLKVMEADPPKG 242 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG--~~i~G~~l~v~~a~~p~~ 242 (253)
....++|.||+ ++++..|.. |..|+. +..+...+|||||.+ ... .+|++.||| ..|.|++|+|.||+ +++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~-~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN-HKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc-CCC
Confidence 34679999999 777777787 888854 333333469998888 433 999999985 68999999999999 555
Q ss_pred c
Q psy882 243 D 243 (253)
Q Consensus 243 ~ 243 (253)
-
T Consensus 109 ~ 109 (119)
T 2ad9_A 109 L 109 (119)
T ss_dssp C
T ss_pred C
Confidence 5
No 274
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=64.89 Aligned_cols=69 Identities=10% Similarity=-0.087 Sum_probs=52.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLSTDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
....++|.||+ .+++..|.. |..++.-..+.-..+||||.+ ... .+|++.|||..|+|++|+|.+|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34679999999 666666777 777754223233457998888 333 9999999999999999999999943
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1e-06 Score=61.49 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=36.0
Q ss_pred cEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 113 QKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 113 g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
|+|||.|.+.++|.+|++.|+|..+ .|++|+|.|+...
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l-~gr~i~v~~A~~~ 84 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDV-FGNRIIVSFTPKN 84 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCS-SSSCCEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCcc-CCceEEEEecCCC
Confidence 9999999999999999999999999 9999999997653
No 276
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.34 E-value=1.9e-07 Score=66.79 Aligned_cols=71 Identities=13% Similarity=-0.032 Sum_probs=54.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCcee---cCeEEEE
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEM---YGSRLKV 234 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i---~G~~l~v 234 (253)
.....++|.||+ ...+..|.. |..+ +.+..++..++||||.+ ... .+|++.|||..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 344679999999 666666665 5544 33555667789998888 333 999999999998 9999999
Q ss_pred EecCCCC
Q psy882 235 MEADPPK 241 (253)
Q Consensus 235 ~~a~~p~ 241 (253)
.||++++
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9999433
No 277
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=3.2e-07 Score=66.23 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=52.7
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--C----hhhhccccchhhhh-H--HHHHHHHHhcCceecCeEEEEEecCC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--D----SRFISRLRLDDFIY-Y--ILVEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~----~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
.....++|.||+ ..++..|.. |..++. + .+.+..+|||||.| . ..++|++.|||..|+|++|+|.+|+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~- 105 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT- 105 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC-
Confidence 344779999999 666776777 777743 1 01123579998888 3 3399999999999999999999999
Q ss_pred CC
Q psy882 240 PK 241 (253)
Q Consensus 240 p~ 241 (253)
|+
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 278
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.33 E-value=2.7e-07 Score=69.83 Aligned_cols=67 Identities=12% Similarity=-0.060 Sum_probs=52.7
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC----------C---hhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEE
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST----------D---SRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKV 234 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~----------~---~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v 234 (253)
...++|.||+ .+.+..|.. |..++. | ..++...|||||.| ... .+|+..|||..|.|++|+|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3679999999 677777777 777743 1 13455679998888 333 9999999999999999999
Q ss_pred EecCC
Q psy882 235 MEADP 239 (253)
Q Consensus 235 ~~a~~ 239 (253)
.||++
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99984
No 279
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.33 E-value=3.8e-07 Score=65.84 Aligned_cols=71 Identities=8% Similarity=-0.073 Sum_probs=54.6
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..++ .+..++..+|||||.| ... .+|+..+ |..|+|++|+|.+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 344779999999 777777777 87773 3556677789998888 333 8899876 59999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
. |+..
T Consensus 102 ~-~~~~ 106 (109)
T 2rs2_A 102 F-PRRA 106 (109)
T ss_dssp C-CCCC
T ss_pred c-CCCC
Confidence 9 6665
No 280
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.33 E-value=5.1e-07 Score=67.78 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=53.3
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCC--------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGL--------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~--------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......++|.||+ ...+..|.. |..+ +.+..++...|||||.| ... .+|++.|||..|+|++|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3455789999999 666666666 7666 33556667789998888 333 999999999999999999998
Q ss_pred c
Q psy882 237 A 237 (253)
Q Consensus 237 a 237 (253)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.33 E-value=5.4e-07 Score=67.01 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=36.8
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|..|+..|||..+ .|++|+|.|+..
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l-~gr~l~V~~a~~ 109 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPF-QGNPLVITFSET 109 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCC-TTSCCEEEECCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEe-CCCEEEEEEccC
Confidence 489999999999999999999999999 999999999664
No 282
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=6.5e-07 Score=64.91 Aligned_cols=69 Identities=10% Similarity=-0.081 Sum_probs=53.9
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCcee--------cCe
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEM--------YGS 230 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i--------~G~ 230 (253)
....++|.||+ ...+..|.. |..+.. +. ++..+|||||.+ ... .+|++.|||..| .|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 44679999999 667777777 777743 33 456679998888 333 999999999999 688
Q ss_pred EEEEEecCCCC
Q psy882 231 RLKVMEADPPK 241 (253)
Q Consensus 231 ~l~v~~a~~p~ 241 (253)
+|.|.||+|+.
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 99999999543
No 283
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=9.2e-08 Score=68.26 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=55.6
Q ss_pred ccccccccchh-hHHHHHhhh-hcC-CCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCce-ecCeEEEEEe
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAG-LST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAE-MYGSRLKVME 236 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~-~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~-i~G~~l~v~~ 236 (253)
....++|.||+ ++.+..|.. |.. ++. +. ++..+|||||.+ ... .+|++.|||.. |+|++|+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34679999999 777777777 777 643 44 566789998888 333 99999999999 9999999999
Q ss_pred cCCCCCc
Q psy882 237 ADPPKGD 243 (253)
Q Consensus 237 a~~p~~~ 243 (253)
|. |+..
T Consensus 87 a~-~~~~ 92 (104)
T 2dhg_A 87 AI-PKAS 92 (104)
T ss_dssp CC-CCCS
T ss_pred cc-CCCc
Confidence 99 5555
No 284
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.2e-06 Score=60.66 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=36.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
++||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKL-HGVNINVEASKNK 80 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBC-SSCBCEEECSSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCcc-CCcEEEEEECCCC
Confidence 79999999999999999999999999 9999999997653
No 285
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.4e-06 Score=60.90 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=37.2
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFEL-AGRPMRVGHVTER 85 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCS-SSSCCEEEESSCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCee-CCcEEEEEEcccc
Confidence 479999999999999999999999999 9999999997654
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.33 E-value=2.4e-07 Score=68.24 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=55.5
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ++.+..|.. |..++. +..++..+|||||.| ... .+|+ .|||..|+|++|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34789999999 667777777 777743 334566679998888 333 8999 899999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
+++..
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65544
No 287
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=5.1e-07 Score=63.50 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=36.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
++||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~-~gr~l~V~~a~~ 89 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKI-GSKKILVSLATG 89 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEEECCC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEEcCC
Confidence 88999999999999999999999999 999999999764
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.32 E-value=1e-07 Score=67.68 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=53.6
Q ss_pred cccccccchh-hHHHHHhhh-hcCC-------CCChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGL-------STDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~-------~~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
...++|.||+ .+.+..|.. |..+ ..+..++..+|||||.+ ... .+|++ |||..|.|++|+|.+|+ |
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~-~ 94 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK-G 94 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS-C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC-C
Confidence 4679999999 666666665 5544 34556667789998888 333 99998 99999999999999999 5
Q ss_pred CCc
Q psy882 241 KGD 243 (253)
Q Consensus 241 ~~~ 243 (253)
+.+
T Consensus 95 ~~~ 97 (101)
T 1fj7_A 95 RDG 97 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 289
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.32 E-value=4e-07 Score=68.47 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=55.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ +..+..|.. |..++. +..++..+|||||.| ... .+|++.|||..|+|++|+|.+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 344789999999 666666666 665532 444566679998888 333 9999999999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
+ ++..
T Consensus 120 ~-~~~~ 124 (139)
T 1u6f_A 120 A-SGHQ 124 (139)
T ss_dssp S-CCCC
T ss_pred C-CCCC
Confidence 9 4444
No 290
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=63.66 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=37.3
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|++|+..|||..+ .|++|+|.|+...
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKDMNGKSL-HGKAIKVEQAKKP 86 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHHCSSCBC-SSSBCEEEECCCS
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEEECCCC
Confidence 579999999999999999999999999 9999999997654
No 291
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=3.2e-07 Score=65.80 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=53.3
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCc--eecCeEEEEEecCCCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGA--EMYGSRLKVMEADPPKG 242 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~--~i~G~~l~v~~a~~p~~ 242 (253)
....++|.||+ ++.+..|.. |..|+. +..+...++||||.+ ... .+|++.|||. .|.|++|+|.||+ ++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~-~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST-SKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc-Ccc
Confidence 34679999999 777777777 888864 222223469998888 433 9999999875 5999999999999 444
Q ss_pred c
Q psy882 243 D 243 (253)
Q Consensus 243 ~ 243 (253)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 292
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=7.7e-07 Score=63.42 Aligned_cols=70 Identities=4% Similarity=-0.038 Sum_probs=53.0
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhc--CceecCeEEEEEecCCCCCc
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLH--GAEMYGSRLKVMEADPPKGD 243 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~ln--G~~i~G~~l~v~~a~~p~~~ 243 (253)
...++|.||+ .+++..|.. |..|+. +..+...+|||||.+ ... .+|++.|+ +..|.|++|+|.||+ ++.-
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~-~~~~ 93 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN-HKEL 93 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS-CSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC-cccC
Confidence 4679999999 777777787 888864 222223369998888 433 89999875 678999999999999 4444
No 293
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=7.7e-07 Score=64.76 Aligned_cols=71 Identities=8% Similarity=-0.050 Sum_probs=55.6
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ .+.+..|.. |..|.. +..++..+|||||.| ... .+|++. ||..|+|++|+|.+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 344789999999 666666777 777732 555566779998888 333 888888 999999999999999
Q ss_pred CCCCCc
Q psy882 238 DPPKGD 243 (253)
Q Consensus 238 ~~p~~~ 243 (253)
. |+.+
T Consensus 104 ~-~~~~ 108 (116)
T 1x4b_A 104 V-AREE 108 (116)
T ss_dssp S-SCCC
T ss_pred C-CCcc
Confidence 9 6666
No 294
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.30 E-value=3.8e-07 Score=68.05 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=53.5
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC----------Chhhhccccchhhhh-HHH-HHHHHHhcCc----eecCeEEE
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST----------DSRFISRLRLDDFIY-YIL-VEFSQTLHGA----EMYGSRLK 233 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~----------~~~~~~~~~fg~v~~-~~~-~~Ai~~lnG~----~i~G~~l~ 233 (253)
....++|.||+ ++.+..|.. |..++. |..++..+|||||.| ... .+|+..|||. .|+|++|+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCCEEEE
Confidence 34679999999 666666666 665522 444667789999988 324 8999999999 99999999
Q ss_pred EEecCC
Q psy882 234 VMEADP 239 (253)
Q Consensus 234 v~~a~~ 239 (253)
|.||++
T Consensus 102 V~~a~~ 107 (131)
T 2m2b_A 102 VEFAKG 107 (131)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 999994
No 295
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=1e-06 Score=62.57 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=37.2
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
++|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..+
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKI-LGKEVKVNWATTP 93 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCc-CCCeEEEEECCCC
Confidence 489999999999999999999999999 9999999997653
No 296
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.29 E-value=5.3e-07 Score=64.35 Aligned_cols=69 Identities=17% Similarity=0.031 Sum_probs=54.1
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecC---eEEEEEe
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYG---SRLKVME 236 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G---~~l~v~~ 236 (253)
...++|.||+ ...+..|.. |..+.. +. .+..++||||.+ ... .+|++.|||..+.| ++|+|.|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 4679999999 666777777 877743 33 355679998888 333 99999999999998 9999999
Q ss_pred cCCCCCc
Q psy882 237 ADPPKGD 243 (253)
Q Consensus 237 a~~p~~~ 243 (253)
|+ ++.+
T Consensus 94 a~-~~~~ 99 (105)
T 2dnh_A 94 AD-TDKE 99 (105)
T ss_dssp SC-SSCC
T ss_pred Cc-cCcc
Confidence 99 4444
No 297
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.29 E-value=2.5e-07 Score=64.79 Aligned_cols=66 Identities=6% Similarity=-0.057 Sum_probs=52.1
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
...++|.||| .+.+..|.. |..+.. +...+..++||||.+ ... .+|++.|||..|+|++|+|.+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3679999999 677777777 776632 334455679998888 333 99999999999999999999987
No 298
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=8.6e-07 Score=64.10 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.|....|...........-..+|||||+|.+.++|++|+..|||..+ .|++|+|.|+.+.
T Consensus 42 ~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-~gr~l~V~~a~~k 101 (111)
T 2cpi_A 42 FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-DGRTLKASLGTTK 101 (111)
T ss_dssp TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEESCCCC
T ss_pred cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-CCEEEEEEecccc
Confidence 36666666644332222224579999999999999999999999999 9999999997653
No 299
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.29 E-value=2.2e-07 Score=71.63 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=53.8
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC--C--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS--T--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~--~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
....++|.||+ ++.+..|.. |..++ . |..++..+|||||.+ ... .+||+.|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 34689999999 666666666 66665 2 556677789998888 333 999999999999999999999
Q ss_pred cCC
Q psy882 237 ADP 239 (253)
Q Consensus 237 a~~ 239 (253)
|.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 983
No 300
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.29 E-value=2.6e-07 Score=63.79 Aligned_cols=66 Identities=14% Similarity=-0.015 Sum_probs=51.9
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
..++|.||| ...+..|.. |..++. +..++...|||||.+ ... .+|+ .|||..|+|++|+|.+|+++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 568999999 666666676 777633 445566779998888 333 8999 99999999999999999954
No 301
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.28 E-value=1.6e-07 Score=66.75 Aligned_cols=71 Identities=11% Similarity=-0.023 Sum_probs=52.9
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCC-------CCh-hhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLS-------TDS-RFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~-------~~~-~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......++|.||+ +..+..|.. |..++ .+. .++..+|||||.+ ... .+|+ .|||..|+|++|+|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3445789999999 666666776 76663 343 3566789998888 333 9999 9999999999999999
Q ss_pred cCCCCC
Q psy882 237 ADPPKG 242 (253)
Q Consensus 237 a~~p~~ 242 (253)
|+ |+.
T Consensus 95 a~-~~~ 99 (100)
T 2j76_E 95 AD-QAQ 99 (100)
T ss_dssp CC-CSC
T ss_pred cc-CCC
Confidence 99 543
No 302
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.28 E-value=1.4e-07 Score=71.04 Aligned_cols=72 Identities=3% Similarity=-0.214 Sum_probs=55.6
Q ss_pred cccccccccccchh-hHHHHHhhh-hcCCCC-----------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEE
Q psy882 169 VVDSKGALQSLTKA-LAQATSLLR-SAGLST-----------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRL 232 (253)
Q Consensus 169 ~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~-----------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l 232 (253)
.......++|.||+ ++++..|.. |..+.. |.. +..+|||||.| ... ++|++ |||..|+||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34455789999999 777777777 777743 333 56679999988 333 99999 99999999999
Q ss_pred EEEecCCCCCc
Q psy882 233 KVMEADPPKGD 243 (253)
Q Consensus 233 ~v~~a~~p~~~ 243 (253)
+|.+|. +++.
T Consensus 118 ~V~~a~-~~e~ 127 (136)
T 2hgl_A 118 EVFKSH-RTEM 127 (136)
T ss_dssp EEEECC-HHHH
T ss_pred EEEECC-hHHH
Confidence 999998 5443
No 303
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.2e-06 Score=63.02 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=36.7
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTI-EGHVVKCYWGKES 99 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEE-CCcEEEEEecCCC
Confidence 89999999999999999999999999 9999999997654
No 304
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=4e-07 Score=65.05 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=55.5
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-H--HHHHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-Y--ILVEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......++|.||+ .+.+..|.. |..+.. +..++..+|||||.| . ...+|+.. ||..|+|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3445789999999 666777777 777743 445556679998888 3 33899998 99999999999999
Q ss_pred cCCCCCc
Q psy882 237 ADPPKGD 243 (253)
Q Consensus 237 a~~p~~~ 243 (253)
|+ |+.+
T Consensus 92 a~-~~~~ 97 (105)
T 2dh8_A 92 CT-PRGM 97 (105)
T ss_dssp SC-CSSC
T ss_pred cc-CCCC
Confidence 99 6655
No 305
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.27 E-value=3e-07 Score=64.32 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=52.7
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HH--HHHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YI--LVEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~--~~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..+.. +.. +..++||||.+ .. ..+|++.|||..|+|++|+|.||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345789999999 666666777 777633 333 56679998888 33 39999999999999999999998
Q ss_pred C
Q psy882 238 D 238 (253)
Q Consensus 238 ~ 238 (253)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 7
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.27 E-value=9.6e-07 Score=65.29 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=50.4
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccc-hhhhh-HHH--HHHHHHhcCceecC--eEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRL-DDFIY-YIL--VEFSQTLHGAEMYG--SRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~f-g~v~~-~~~--~~Ai~~lnG~~i~G--~~l~v~~a~~p 240 (253)
..++|.||+ .+.+..|.+ |..|+. +..+-.+.|| |||.+ ... ..|+++|||..|.| ++|+|.||+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 446789999 667777777 998865 2222123486 98888 433 99999999999998 69999999954
No 307
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=1.1e-06 Score=61.89 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=37.5
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
..+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTV-DGHKLEVRISERA 88 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEE-TTEECEEECSSCS
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCee-CCeEEEEEEccCC
Confidence 3578999999999999999999999999 9999999997654
No 308
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.4e-06 Score=63.01 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=52.8
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..+.. +. .+..++||||.| ... .+|++.|||..|+|++|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34679999999 667777777 777743 33 255679998888 333 99999999999999999999998
Q ss_pred C
Q psy882 239 P 239 (253)
Q Consensus 239 ~ 239 (253)
+
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 309
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=8.8e-07 Score=64.44 Aligned_cols=68 Identities=12% Similarity=-0.076 Sum_probs=53.4
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ..++..|.. |..+. .+..++..++||||.| ... .+|++.||+ .|.|++|+|.+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 344779999999 666666776 77763 3555567779998888 333 999999999 899999999999
Q ss_pred CC
Q psy882 238 DP 239 (253)
Q Consensus 238 ~~ 239 (253)
.+
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 84
No 310
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.8e-06 Score=61.88 Aligned_cols=41 Identities=24% Similarity=0.137 Sum_probs=36.5
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhC--CCcCCCCCcEEEEecCCC
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFH--GFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~--g~~~~~g~~l~v~~~~~~ 151 (253)
..+|||||+|.+.++|.+|+..|+ +..+ .|++|+|.|+.+.
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l~V~~a~~~ 92 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQIAVDWAEPE 92 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCCEEEESCSS
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeEEEEEcCCC
Confidence 458999999999999999999996 5888 9999999997654
No 311
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.4e-06 Score=61.30 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=37.1
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQV-ESVQLKVNIARKQ 87 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEE-TTEEEEEECCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEEECCCC
Confidence 489999999999999999999999999 9999999997653
No 312
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.25 E-value=1.2e-06 Score=60.45 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=37.0
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
..+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~~a~~ 77 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSF-RGKDLIVQLQPT 77 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEE-TTEEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeE-CCcEEEEEEcCC
Confidence 3589999999999999999999999999 999999999654
No 313
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=2.4e-06 Score=61.93 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=37.1
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKL-YGKILVIEFGKNK 105 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBC-SSCBCEEEECCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEe-CCcEEEEEEccCC
Confidence 479999999999999999999999999 9999999997653
No 314
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=1.7e-06 Score=60.77 Aligned_cols=38 Identities=26% Similarity=0.179 Sum_probs=35.9
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCC--CCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPP--GIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~~~~ 150 (253)
++||||+|.+.++|++|+..|||..+ . |++|+|.|+.+
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~~l~V~~a~~ 92 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLRVDFAKS 92 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCcEEEEEECCC
Confidence 78999999999999999999999999 7 99999999764
No 315
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=6e-07 Score=65.17 Aligned_cols=69 Identities=6% Similarity=-0.053 Sum_probs=53.9
Q ss_pred ccccccccccchh-h-HHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcC--ceecCeEEEEEecC
Q psy882 170 VDSKGALQSLTKA-L-AQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHG--AEMYGSRLKVMEAD 238 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~-~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG--~~i~G~~l~v~~a~ 238 (253)
......++|.||+ + +.+..|.. |..|+. +..+...++||||.+ ... .+|++.||| ..|.|++|+|.||+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 3345789999999 6 77888887 888854 444445569998888 433 999999875 56999999999999
No 316
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.23 E-value=6.1e-07 Score=64.25 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=52.8
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
.....++|.||+ ...+..|.. |..++. +. ++...+||||.+ ... .+|++.|||..|+|++|+|.+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345789999999 666666676 777743 33 456679998888 333 9999999999999999999998
Q ss_pred C
Q psy882 238 D 238 (253)
Q Consensus 238 ~ 238 (253)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 317
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.23 E-value=1.2e-06 Score=64.51 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=53.9
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
......++|.||+ ...+..|.. |..++. +. ++..+|||||.+ ... .+|++.|||..|+|++|+|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3445789999999 666666666 766632 33 456779998888 333 999999999999999999999
Q ss_pred cCC
Q psy882 237 ADP 239 (253)
Q Consensus 237 a~~ 239 (253)
|.+
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 995
No 318
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=6.7e-07 Score=64.87 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=54.8
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ .+.+..|.. |..++ .+..++...|||||.| ... .+|+ .|||..|+|++|+|.+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34789999999 667777777 77773 3555567779998888 333 9999 999999999999999998
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
|+..
T Consensus 103 -~~~~ 106 (114)
T 2cq4_A 103 -AEKN 106 (114)
T ss_dssp -HHHH
T ss_pred -CCcc
Confidence 4433
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.1e-06 Score=61.79 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=36.9
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|..|+..|||..+ .|++|+|.|+...
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMN-FGKKLILEVSSSN 83 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSC-BTTTBCEEEEECC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCee-CCcEEEEEEcCcC
Confidence 389999999999999999999999999 9999999997643
No 320
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=5e-07 Score=66.67 Aligned_cols=70 Identities=10% Similarity=-0.116 Sum_probs=54.5
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-H--HHHHHHHHhcCceecCeEEEEEec
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-Y--ILVEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
....+++|.||+ .+++..|.. |..+.. +..++..+|||||.| . ...+||+ |||..|+|++|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345789999999 777777777 777733 224456679999988 3 3399999 9999999999999999
Q ss_pred CCCCC
Q psy882 238 DPPKG 242 (253)
Q Consensus 238 ~~p~~ 242 (253)
. +++
T Consensus 102 ~-~~~ 105 (124)
T 1wel_A 102 T-KKG 105 (124)
T ss_dssp C-HHH
T ss_pred C-HHH
Confidence 8 544
No 321
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.21 E-value=2.4e-06 Score=60.20 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=36.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+.+
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~~a~~ 88 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFACH 88 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCB-TTBCCEEEESSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEe-CCceEEEEEcCC
Confidence 79999999999999999999999999 999999999765
No 322
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-06 Score=61.35 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=35.1
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~~A 98 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAIDWFDGKEF-SGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHHHHTTCBS-SSSBCEEEEC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEe-CCcEEEEEec
Confidence 478999999999999999999999999 9999999985
No 323
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.20 E-value=1.7e-06 Score=61.38 Aligned_cols=54 Identities=13% Similarity=0.006 Sum_probs=42.4
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCC-CcEEEEecC
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPG-IPMVVVPDF 149 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~~~ 149 (253)
|....|....... .-.++|||||+|.+.++|.+|+..|||..+ .| ++|+|.|+.
T Consensus 37 G~i~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g~r~l~V~~a~ 91 (100)
T 3ns6_A 37 GKVVNMEFPIDEA---TGKTKGFLFVECGSMNDAKKIIKSFHGKRL-DLKHRLFLYTMK 91 (100)
T ss_dssp SCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCBS-SSSCBCEEEESH
T ss_pred CCEeEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHhCCccc-CCCeEEEEEECc
Confidence 5555555543221 123589999999999999999999999999 88 999999954
No 324
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.20 E-value=1.3e-06 Score=60.58 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=37.1
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~~ 151 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+...
T Consensus 47 ~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 47 SKGCGVVKFESPEVAERACRMMNGMKL-SGREIDVRIDRNA 86 (92)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCB-TTBCCCCEECSCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEEEcCCC
Confidence 479999999999999999999999999 9999999997653
No 325
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.19 E-value=8e-07 Score=63.66 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
.|....|....... --++|||||+|.+.++|.+|+..|||..+ .|++|+|.|+
T Consensus 51 ~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~-~Gr~i~v~~s 103 (104)
T 1jmt_A 51 YGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWF-NGQPIHAELS 103 (104)
T ss_dssp TCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEE-TTEECCEEEC
T ss_pred CCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEE-CCEEEEEEEc
Confidence 37777777664321 14589999999999999999999999999 9999999984
No 326
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=8.1e-07 Score=60.75 Aligned_cols=67 Identities=12% Similarity=-0.021 Sum_probs=51.1
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHh-cCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTL-HGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~l-nG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ ...+..|.. |..++. .......++||||.+ ... .+|++.| ||..|+|++|+|.||+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34679999999 666777777 887754 222223469998888 333 9999999 9999999999999985
No 327
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=2.6e-06 Score=61.63 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=36.8
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~-~gr~l~v~~a~~ 101 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWF-GGRQITAQAWDG 101 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEE-TTEECEEEECCS
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEE-CCcEEEEEEeCC
Confidence 689999999999999999999999999 999999999654
No 328
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.17 E-value=1.3e-06 Score=62.60 Aligned_cols=55 Identities=16% Similarity=0.017 Sum_probs=43.4
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
|....|.......- .--++|||||+|.+.++|.+|+..|||..+ .|++|+|.|+.
T Consensus 38 G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-~Gr~i~v~~a~ 92 (105)
T 2pe8_A 38 GKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYF-GGRVVKACFYN 92 (105)
T ss_dssp SCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEECC
T ss_pred CCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEE-CCcEEEEEEcC
Confidence 66666665543211 123489999999999999999999999999 99999999954
No 329
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.17 E-value=1.8e-06 Score=60.81 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=36.4
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a~~ 94 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMN-FGKKLILEVSSS 94 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEE-TTEECEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEecCC
Confidence 389999999999999999999999999 999999999654
No 330
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.16 E-value=9.3e-07 Score=65.82 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=53.0
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCCC--hhh-hccccc-hhhhh-HHH--HHHHHHhcCceecC--eEEEEEecCCC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLSTD--SRF-ISRLRL-DDFIY-YIL--VEFSQTLHGAEMYG--SRLKVMEADPP 240 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~~--~~~-~~~~~f-g~v~~-~~~--~~Ai~~lnG~~i~G--~~l~v~~a~~p 240 (253)
.-..++|.||+ ..++..|.+ |..|+.- ..+ ...++| |||.+ ... .+|+++|||..|.| ++|+|+||+++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 33667899998 677777788 9998651 111 233578 98888 443 99999999999999 99999999954
Q ss_pred C
Q psy882 241 K 241 (253)
Q Consensus 241 ~ 241 (253)
+
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 3
No 331
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.15 E-value=1.6e-06 Score=60.72 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=36.5
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+.+
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~~ 90 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQGAEI-DGRSVSLYYTGE 90 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEE-TTEEEEEEECSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEEcCC
Confidence 489999999999999999999999999 999999999754
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=3.2e-06 Score=61.12 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=36.5
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.++||||+|.+.++|..|+..|||..+ .|++|+|.|+..
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKF-HHVPLYLEWAPI 83 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBS-SSSBCEEEEEET
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEE-CCeEEEEEECCC
Confidence 578999999999999999999999999 999999999654
No 333
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=62.63 Aligned_cols=65 Identities=12% Similarity=-0.082 Sum_probs=52.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC-------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS-------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~-------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||| ++++..|.. |..+. .|.. +..+|||||.| ... ++|+ .|||..|+||.|+|..|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34789999999 777777777 77772 2444 66789999988 333 8898 799999999999999987
No 334
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=2e-06 Score=60.57 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=36.6
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCc----EEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIP----MVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~----l~v~~~~~~ 151 (253)
.+|||||+|.+.++|++|+..|||..+ .|+. |+|.|+...
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 51 PAGYCFVEFADLATAEKCLHKINGKPL-PGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEEEEEEECSCHHHHHHHHHTTTTSEE-SSCSSCEECCEEETTCC
T ss_pred cCCEEEEEeCCHHHHHHHHHHHcCCcc-CCCCcceeEEEeecCCC
Confidence 478999999999999999999999999 9988 999997653
No 335
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.12 E-value=2e-06 Score=61.69 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=44.5
Q ss_pred CCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 91 ~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.|....|....+..-. .--++|++||+|.+.++|.+|+..|||..+ .|++|+|.|.+
T Consensus 39 ~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f-~GR~i~v~~~~ 95 (105)
T 3v4m_A 39 YGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGLTGRKF-ANRVVVTKYCD 95 (105)
T ss_dssp TSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEEC
T ss_pred cCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHhCCCEe-CCCEEEEEEeC
Confidence 3777777665533110 013589999999999999999999999999 99999999943
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.12 E-value=3.9e-06 Score=61.73 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=36.7
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g~~l~V~~a~~ 110 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQV-ESVQLKVNIARK 110 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBC-SSCBCEEEECCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEEeCC
Confidence 489999999999999999999999999 999999999764
No 337
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.12 E-value=1.7e-06 Score=63.33 Aligned_cols=70 Identities=3% Similarity=-0.199 Sum_probs=53.8
Q ss_pred ccccccccccchh-hHHHHHhhh-hcCCCC-----------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEE
Q psy882 170 VDSKGALQSLTKA-LAQATSLLR-SAGLST-----------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLK 233 (253)
Q Consensus 170 ~~~~~~~~v~n~~-~~~~~~l~~-~~~~~~-----------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~ 233 (253)
......++|.||+ ++++..|.. |..+.. +.. +..+|||||.| ... ++|++ |||..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3445789999999 777777777 776632 333 55679999988 333 89998 999999999999
Q ss_pred EEecCCCCC
Q psy882 234 VMEADPPKG 242 (253)
Q Consensus 234 v~~a~~p~~ 242 (253)
|.+|. +++
T Consensus 92 V~~a~-~~~ 99 (118)
T 2db1_A 92 VFKSH-RTE 99 (118)
T ss_dssp EEEEC-HHH
T ss_pred EEECC-HHH
Confidence 99998 443
No 338
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.10 E-value=1.6e-06 Score=62.03 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=36.8
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCC-cEEEEecCC
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGI-PMVVVPDFS 150 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~-~l~v~~~~~ 150 (253)
.++|||||+|.+.++|.+|+..|||..+ .|+ +|+|.|+.+
T Consensus 59 ~~~G~afV~f~~~~~A~~Ai~~l~g~~~-~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 59 KTKGYIFLEYASPAHAVDAVKNADGYKL-DKQHTFRVNLFTD 99 (105)
T ss_dssp BSCCEEEEEECSSSHHHHHHHHCSSEEC-STTCEEEEECSCC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCccc-CCCceEEEEEcch
Confidence 4589999999999999999999999999 998 999999653
No 339
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=3.3e-06 Score=59.95 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=51.9
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
....++|.||+ .+.+..|.. |..++. +..++..+|||||.+ ... .+|+. ++..|+|++|+|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 34679999999 666666776 777633 445566779998888 333 77777 5789999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
++++
T Consensus 92 -~~~~ 95 (103)
T 2cqg_A 92 -SKQS 95 (103)
T ss_dssp -TTCC
T ss_pred -CCCc
Confidence 6655
No 340
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.35 E-value=4.6e-07 Score=66.00 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=53.2
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC----------------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeE
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST----------------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSR 231 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~----------------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~ 231 (253)
...++|.||+ .+.+..|.. |..+.. +..++..+|||||.| ... .+|++.|||..|.|++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 3568999999 667776666 665522 224455669998888 333 9999999999999999
Q ss_pred EEEEecCCCCCc
Q psy882 232 LKVMEADPPKGD 243 (253)
Q Consensus 232 l~v~~a~~p~~~ 243 (253)
|+|.+|+ |+..
T Consensus 87 l~V~~a~-~~~~ 97 (116)
T 2lcw_A 87 IKVSFAT-RRAD 97 (116)
Confidence 9999999 5554
No 341
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=2.4e-06 Score=60.96 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=54.8
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC---------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST---------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~---------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
.....++|.||| ++.+..|.. |..+.. + .++..+|||||.| ... .+|++. ||..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345789999999 777777777 777632 3 4566779999988 333 889987 99999999999999
Q ss_pred cCCCCCc
Q psy882 237 ADPPKGD 243 (253)
Q Consensus 237 a~~p~~~ 243 (253)
+. +++-
T Consensus 91 ~~-~~~~ 96 (104)
T 1wg5_A 91 SS-RAEV 96 (104)
T ss_dssp EC-TTTS
T ss_pred CC-HHHH
Confidence 98 6554
No 342
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.07 E-value=3.2e-06 Score=56.27 Aligned_cols=36 Identities=8% Similarity=-0.118 Sum_probs=33.5
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
++|||||+|.+.++|++|+. |||..+ .|++|+|.|+
T Consensus 40 ~~g~afV~f~~~~~a~~a~~-~~~~~~-~g~~l~v~~A 75 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE-IHFHEI-NNKMVECKKA 75 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS-SSCCCS-SSCCCEEECC
T ss_pred cCcEEEEEECCHHHHHHHHH-CCCCEE-CCEEEEEEeC
Confidence 58999999999999999997 999999 9999999883
No 343
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.06 E-value=2.5e-06 Score=62.06 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=41.2
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
|....|...... .+|++||+|.+.++|.+|+..|||..+ +|+.|+|.|.
T Consensus 42 G~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~lnG~~f-~GR~i~v~~~ 90 (114)
T 3s6e_A 42 GGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALHGRWF-AGKMITAAYV 90 (114)
T ss_dssp TCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHTTCEE-TTEECEEEEE
T ss_pred CCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEEEE
Confidence 555556554322 489999999999999999999999999 9999999994
No 344
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=3.2e-06 Score=60.28 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=34.2
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCC--cCCCCCcEEEEecCC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGF--AYPPGIPMVVVPDFS 150 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~~~~ 150 (253)
++||||+|.+.++|..|+..||+. .+ .|++|+|.|+..
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPVRVHLSQK 91 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEECEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEEEEEECCC
Confidence 689999999999999999999865 47 999999999764
No 345
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.04 E-value=1.9e-06 Score=58.46 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=32.3
Q ss_pred ccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCC-cEEE
Q psy882 110 RGGQKISVQYTSPQSAAYARDKFHGFAYPPGI-PMVV 145 (253)
Q Consensus 110 v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~-~l~v 145 (253)
-.+|||||+|.+.++|.+|+..|||..+ .|+ +|+|
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng~~~-~g~~~l~V 80 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADGYKL-DKQHTFRV 80 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSSCCC-SSSSCCCC
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcCccc-CCceeEEe
Confidence 4589999999999999999999999999 998 8876
No 346
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.03 E-value=2.3e-06 Score=58.75 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=50.2
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEec
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEA 237 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a 237 (253)
....++|.||| ...+..|.. |..++. +..++...|||||.+ ... .+|++ ++|..|+|++|+|.+|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 44679999999 677777777 877743 555566779998888 333 88885 5888999999999986
No 347
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=4.6e-06 Score=60.47 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=52.9
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC---------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEe
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST---------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~---------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
....+++|.||+ ++++..|.. |..+.. |. ++..+|||||.| ... .+||+. ||..|+|++|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345789999999 777777777 766632 33 456779999988 333 888877 99999999999999
Q ss_pred cCCCCC
Q psy882 237 ADPPKG 242 (253)
Q Consensus 237 a~~p~~ 242 (253)
|. +++
T Consensus 91 a~-~~~ 95 (114)
T 2cpy_A 91 VT-LED 95 (114)
T ss_dssp EC-HHH
T ss_pred CC-HHH
Confidence 98 443
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.03 E-value=6e-06 Score=63.79 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=35.9
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCC--CcEEEEecCCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPG--IPMVVVPDFSY 151 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~~~~~ 151 (253)
.++||||+|.+.++|+.|+..|||..| .| ++|+|.|+...
T Consensus 83 ~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 83 NQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRIDFSKLT 124 (164)
T ss_dssp SCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEEECSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEEEecCC
Confidence 368999999999999999999999999 55 99999997654
No 349
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=4.2e-07 Score=62.26 Aligned_cols=66 Identities=8% Similarity=-0.074 Sum_probs=51.9
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
...++|.||+ ...+..|.. |..++. +..++..+|||||.+ ... .+|++.|||..|.|+.|+++++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3678999999 666777777 777732 445566789998888 333 99999999999999999998865
No 350
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=2.2e-06 Score=61.00 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=53.6
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC-------Chhhhccccchhhhh-HH--HHHHHHHhcCceecCeEEEEEecC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST-------DSRFISRLRLDDFIY-YI--LVEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~-------~~~~~~~~~fg~v~~-~~--~~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
.....++|.||| ++++..|.. |..+.. |. ++..+|||||.| .. .++|| .+||..|+||.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 344789999999 777777888 877742 33 456679998888 33 38899 589999999999999999
Q ss_pred CCC
Q psy882 239 PPK 241 (253)
Q Consensus 239 ~p~ 241 (253)
++.
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.01 E-value=7.9e-07 Score=72.86 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=53.9
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCC--C--------Chhhhccccchhhhh-H--HHHHHHHHhcCceecCeEEEEEe
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLS--T--------DSRFISRLRLDDFIY-Y--ILVEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~--~--------~~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
....|+|.||+ .+++..|.. |..|. . |..++..+|||||.| . ...+||+.|||..|+|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 34679999999 677777777 77775 2 555667779999988 3 33999999999999999999999
Q ss_pred cCC
Q psy882 237 ADP 239 (253)
Q Consensus 237 a~~ 239 (253)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 984
No 352
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.7e-05 Score=55.33 Aligned_cols=71 Identities=23% Similarity=0.198 Sum_probs=64.6
Q ss_pred CcEEEEE-cCCCCCHHHHHHhhcCC-----CceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcE
Q psy882 22 HSRLFIL-CGKDVTEDDLRQGFSPF-----GNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPI 95 (253)
Q Consensus 22 ~~~lfv~-Lp~~~te~~l~~~f~~~-----G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i 95 (253)
.++|-+- ||..+++..|+.+.+++ |.+..|.+..| -+-|+|+|.+...|-+|.=.|+|..| .|+.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef--~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQF--QGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEE--TTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeee--cCeEE
Confidence 4677787 99999999999999999 99999999888 67899999999999999888999999 79999
Q ss_pred EEEEc
Q psy882 96 KVLIA 100 (253)
Q Consensus 96 ~v~~a 100 (253)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98754
No 353
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.00 E-value=3.2e-06 Score=58.37 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=34.4
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.+ |.+|+..|||..+ .|++|+|.|+..
T Consensus 42 ~~g~afV~f~~~~-a~~a~~~l~g~~~-~g~~l~V~~a~~ 79 (90)
T 2ki2_A 42 PKGFGFVEMQEES-VSEAIAKLDNTDF-MGRTIRVTEANP 79 (90)
T ss_dssp CCEEEEEEECTTH-HHHHHHTSCSSCC-SSSSCSEEEC--
T ss_pred cceEEEEEECCHH-HHHHHHHhCCCEE-CCeEEEEEEcCC
Confidence 4899999999999 9999999999999 999999999764
No 354
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=2.4e-06 Score=62.09 Aligned_cols=67 Identities=13% Similarity=-0.071 Sum_probs=49.7
Q ss_pred cccccc--cchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCcee-----cCeEEEEEecC
Q psy882 173 KGALQS--LTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEM-----YGSRLKVMEAD 238 (253)
Q Consensus 173 ~~~~~v--~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i-----~G~~l~v~~a~ 238 (253)
...++| .||+ .+++..|.. |..|+. +..+...+|||||.+ ... ++|++.|||.+| .|++|.|.|++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 466999 5598 666666776 777743 222222368998888 433 999999999999 79999999998
Q ss_pred C
Q psy882 239 P 239 (253)
Q Consensus 239 ~ 239 (253)
.
T Consensus 105 ~ 105 (114)
T 2cq2_A 105 K 105 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 355
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.99 E-value=6.5e-06 Score=59.60 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=35.5
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
+|||||+|.+.++|.+|+..|||..+ .|+.|+|.|+.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~~a~ 83 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNV-SNRYLVVLYYN 83 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBS-SSCBCEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEEec
Confidence 89999999999999999999999999 99999999965
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.97 E-value=4.3e-06 Score=61.22 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCcEEEEEccccccCc-CcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 92 SKPIKVLIAAKLEFKE-GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~-~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
|....|....+..-.. .--++|++||+|.+.++|.+|+..|||..+ .|++|++.|.
T Consensus 50 G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-~GR~i~v~~~ 106 (118)
T 3ue2_A 50 GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-AGRKVVAEVY 106 (118)
T ss_dssp SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEE
T ss_pred CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-CCcEEEEEEc
Confidence 6666666555432111 112479999999999999999999999999 9999999994
No 357
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=8.2e-06 Score=58.17 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
|....|....... -..+|||||+|.+.++|..|+. ++|..+ .|++|.|.|+
T Consensus 36 G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~-~gr~l~V~~~ 86 (103)
T 1s79_A 36 GQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKY-KETDLLILFK 86 (103)
T ss_dssp SCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCC-TTTTCEEEEH
T ss_pred CCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEE-CCEEEEEEEc
Confidence 5555555544322 2358999999999999999998 899999 9999999993
No 358
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.91 E-value=2.8e-06 Score=64.10 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=54.4
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC-------CChhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS-------TDSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~-------~~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
.....++|.||| ++++..|.. |..+. .|.. +..+|||||.| ... ++|| .+||..|+|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 344679999999 777777777 87773 3444 66779998888 433 8888 889999999999999999
Q ss_pred CCCCc
Q psy882 239 PPKGD 243 (253)
Q Consensus 239 ~p~~~ 243 (253)
+++.
T Consensus 122 -~~~~ 125 (139)
T 2hgn_A 122 -TTGA 125 (139)
T ss_dssp -CSCC
T ss_pred -CCCC
Confidence 4443
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.89 E-value=7.3e-06 Score=56.07 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=32.4
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+|||||+|.+.++|.+|+ .|||..+ .|++|+|..
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~-~g~~l~V~r 86 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIF-QGQSLKIRR 86 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEE-TTEECEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEE-CCeEEEEeC
Confidence 899999999999999999 9999999 999999874
No 360
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.88 E-value=2.6e-06 Score=61.95 Aligned_cols=66 Identities=6% Similarity=-0.038 Sum_probs=48.4
Q ss_pred cccccccchh-hHHHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeE-----EEEEecCC
Q psy882 173 KGALQSLTKA-LAQATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSR-----LKVMEADP 239 (253)
Q Consensus 173 ~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~-----l~v~~a~~ 239 (253)
...++|.||+ ++++..|.. |..+.. +..+... +||||.| ... ++||+.|||.+|+|++ |+|..+.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4779999999 667777777 777743 1111111 9998888 333 9999999999999999 88888884
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=2.6e-05 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=32.5
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|..|+..+++ + .|++|+|.|+..
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~--~-~g~~l~V~~a~~ 89 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVG--L-VDNPLKISWLEG 89 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCB--C-SSSBCEEECSSC
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC--C-CCCeEEEEEccC
Confidence 489999999999999999998555 5 799999999664
No 362
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=8.4e-06 Score=54.38 Aligned_cols=36 Identities=3% Similarity=-0.160 Sum_probs=33.6
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
.+|||||+|.+.++|.+|+..++ ..+ .|++|+|.|+
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~~~-~~~-~g~~l~v~~a 76 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQSR-HEL-DSKTIDPKVA 76 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHTTT-CCC-SSCCCEEEEC
T ss_pred cCceEEEEEcCHHHHHHHHHhCC-Ccc-CCEEEEEEec
Confidence 48999999999999999999999 888 9999999984
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.83 E-value=5.7e-06 Score=61.10 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=50.5
Q ss_pred ccccccch----h-hHHHHHhhh-hcCCC--------CChhhhccccchhhhh-H----H------HHHHHH--HhcCce
Q psy882 174 GALQSLTK----A-LAQATSLLR-SAGLS--------TDSRFISRLRLDDFIY-Y----I------LVEFSQ--TLHGAE 226 (253)
Q Consensus 174 ~~~~v~n~----~-~~~~~~l~~-~~~~~--------~~~~~~~~~~fg~v~~-~----~------~~~Ai~--~lnG~~ 226 (253)
..++|.|+ + .+++..|.. |..|+ .|..++.++|||||.+ . . ..+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 35789999 7 666666666 77773 3999999999998877 4 1 277878 789999
Q ss_pred ecCeEEEEEecC
Q psy882 227 MYGSRLKVMEAD 238 (253)
Q Consensus 227 i~G~~l~v~~a~ 238 (253)
|+|++|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999844
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.80 E-value=9.5e-06 Score=66.69 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=52.8
Q ss_pred ccccccccchh-hH---------HHHHhhh-hcCCCC--Chhhhccccchhhhh-HHH--HHHHHHhcCcee--------
Q psy882 172 SKGALQSLTKA-LA---------QATSLLR-SAGLST--DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEM-------- 227 (253)
Q Consensus 172 ~~~~~~v~n~~-~~---------~~~~l~~-~~~~~~--~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i-------- 227 (253)
....|+|.||+ .. .+..|.. |..|+. +..+...+|||||.+ ... +.|+++|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~ 212 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW 212 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence 44679999999 44 4666777 888865 333334579999888 433 999999999999
Q ss_pred ----cCeEEEEEecCC
Q psy882 228 ----YGSRLKVMEADP 239 (253)
Q Consensus 228 ----~G~~l~v~~a~~ 239 (253)
.|++|.|.||++
T Consensus 213 ~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 213 DDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGGGSCCCEEEECC-
T ss_pred cccCCCCEEEEEEccC
Confidence 999999999994
No 365
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.79 E-value=1.4e-05 Score=57.19 Aligned_cols=37 Identities=14% Similarity=-0.068 Sum_probs=34.2
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
.+|||||+|.+.++|.+|+. ||+..+ .|+.|+|.++.
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~-~gr~i~V~~a~ 90 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE-KHRMYM-GQRYVEVYEIN 90 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT-TTTCCS-SSSCCCCEECC
T ss_pred EeeEEEEEECCHHHHHHHHH-hCccee-CCeEEEEEECC
Confidence 48999999999999999998 999999 99999999954
No 366
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.72 E-value=3.1e-05 Score=60.74 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=36.4
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.+|||||+|.+.++|.+|+..|||..+ .|++|+|.|+..
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~~l-~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGVPL-DGRPMDIQLVAS 166 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTCBC-SSSBCEEEEESS
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCCEE-CCEEEEEEEecC
Confidence 479999999999999999999999999 999999999653
No 367
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=6.3e-05 Score=52.35 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=33.8
Q ss_pred EEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 114 KISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 114 ~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
.|||+|.+.++|.+|+..|||..+ .|++|+|.|+.+
T Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~~a~~ 91 (96)
T 2e44_A 56 VVNVTYSSKDQARQALDKLNGFQL-ENFTLKVAYIPD 91 (96)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBC-SSCBCEEEECCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEEEcCc
Confidence 399999999999999999999999 999999999664
No 368
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=53.93 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=33.1
Q ss_pred EEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecCC
Q psy882 114 KISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFS 150 (253)
Q Consensus 114 ~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~~ 150 (253)
||||+|.+.++|.+|+. |||..+ .|++|+|.++..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~-~g~~l~V~~a~~ 81 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSL-GGHRLRVRPREQ 81 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEE-TTEECCCBCSCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEE-CCEEEEEEECCc
Confidence 99999999999999999 999999 999999999654
No 369
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.66 E-value=2.5e-05 Score=53.96 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=47.0
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCCC--Chhh-hccccchhhhhHHHHHHHHHhcCceec--CeEEEEEecCCCCCc
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLST--DSRF-ISRLRLDDFIYYILVEFSQTLHGAEMY--GSRLKVMEADPPKGD 243 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~-~~~~~fg~v~~~~~~~Ai~~lnG~~i~--G~~l~v~~a~~p~~~ 243 (253)
.....++|.||+ ++++..|.. |..++. +..+ ...+|||||.+.+.+.|. .|+|..+. |++|.|.+|. |+.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~-~~~~~~~~~~g~~v~v~~a~-~k~~ 86 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ-SLCGEDLIIKGISVHISNAE-PKHN 86 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH-HHTTCEEEETTEEEEEEECC-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH-HHcCCCcccCCEEEEEEEcC-CCCc
Confidence 344779999999 777777777 888854 1111 125699988884443333 57887655 9999999999 6655
No 370
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.64 E-value=3.7e-06 Score=62.29 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=52.7
Q ss_pred cccccccccchh-hHHHHHhhh-hcCCC---------CChhhhccccchhhhh-H--HHHHHHHHhcCceecCeEEEEEe
Q psy882 171 DSKGALQSLTKA-LAQATSLLR-SAGLS---------TDSRFISRLRLDDFIY-Y--ILVEFSQTLHGAEMYGSRLKVME 236 (253)
Q Consensus 171 ~~~~~~~v~n~~-~~~~~~l~~-~~~~~---------~~~~~~~~~~fg~v~~-~--~~~~Ai~~lnG~~i~G~~l~v~~ 236 (253)
.....++|.||| ++++..|.. |..+. .|.. +..+|||||.| . ..++|++ +++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 445779999999 777777777 77762 2444 66779998888 3 3388887 478999999999999
Q ss_pred cCCCCC
Q psy882 237 ADPPKG 242 (253)
Q Consensus 237 a~~p~~ 242 (253)
|. +++
T Consensus 118 a~-~~e 122 (126)
T 2hgm_A 118 SS-QEE 122 (126)
T ss_dssp EC-HHH
T ss_pred CC-HHH
Confidence 97 443
No 371
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.64 E-value=2.3e-05 Score=51.97 Aligned_cols=36 Identities=3% Similarity=-0.144 Sum_probs=32.4
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
.+|||||+|.+.++|.+|+.. ++..+ .|+.|+|.++
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~-~~~~~-~g~~l~v~~a 75 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK-KYHNV-GLSKCEIKVA 75 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT-SSCCB-TTBCCCEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHh-CCCeE-CCEEEEEEEC
Confidence 489999999999999999985 88888 9999999873
No 372
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.63 E-value=0.00055 Score=47.34 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=56.6
Q ss_pred cEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGE--SKGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 23 ~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~--~~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
++|-|+ ||+..||+++.+.++..+.+.....+..+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 578999 999999999999999998887777666654433 2367999999999999999999999875
No 373
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=9.1e-06 Score=59.92 Aligned_cols=68 Identities=4% Similarity=-0.115 Sum_probs=52.6
Q ss_pred ccccccccchh-hHHHHHhhh-hcCCCC------------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEE
Q psy882 172 SKGALQSLTKA-LAQATSLLR-SAGLST------------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKV 234 (253)
Q Consensus 172 ~~~~~~v~n~~-~~~~~~l~~-~~~~~~------------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v 234 (253)
....++|.||| ++++..|.. |..+.. | .++..+|||||.| ... .+|++. ||..|+||.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 34789999999 777777777 776631 3 3456679999988 333 888886 999999999999
Q ss_pred EecCCCCC
Q psy882 235 MEADPPKG 242 (253)
Q Consensus 235 ~~a~~p~~ 242 (253)
..|. +++
T Consensus 100 ~~a~-~~e 106 (123)
T 2dha_A 100 FRST-AAE 106 (123)
T ss_dssp EEEC-HHH
T ss_pred EECC-HHH
Confidence 9998 544
No 374
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.44 E-value=1.4e-05 Score=56.43 Aligned_cols=66 Identities=12% Similarity=-0.006 Sum_probs=50.2
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCCC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADPP 240 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~p 240 (253)
..++|.||+ ...+..|.. |..++. +. ++..+|||||.+ ... .+|++ ||..|+|++|.|.++. +
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~-~ 85 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI-R 85 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE-E
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC-c
Confidence 578999999 666766777 776633 44 566779998887 322 88887 9999999999999998 5
Q ss_pred CCc
Q psy882 241 KGD 243 (253)
Q Consensus 241 ~~~ 243 (253)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 444
No 375
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.44 E-value=9.7e-05 Score=58.68 Aligned_cols=109 Identities=10% Similarity=-0.090 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhh--CCCcCCCCCcEEEEecCCCCCCCCCCCCCCCCcccccccccccccccchh-hHHHHHhhh-hcCCC
Q psy882 121 SPQSAAYARDKF--HGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKA-LAQATSLLR-SAGLS 196 (253)
Q Consensus 121 ~~~~A~~A~~~l--~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~~-~~~~~~l~~-~~~~~ 196 (253)
+.+....|+... ....+ .+...+|........|. .............++|.||| ++.+..|.. |..++
T Consensus 63 d~~~I~~Al~~S~~~~lev-~ed~~~vrR~~~~p~p~-------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEI-SEDKTKIRRSPSKPLPE-------VTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEE-CTTSSEEEECTTSCCCC-------CCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEE-ecccceEEecccCCCcc-------cchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 567788888777 44555 45445554421100000 00000011123679999999 666666777 88774
Q ss_pred C--------Chhhhccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecCC
Q psy882 197 T--------DSRFISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEADP 239 (253)
Q Consensus 197 ~--------~~~~~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~~ 239 (253)
. +.. +..+|||||.| ... .+|+..++ ..|+|++|.|.+++.
T Consensus 135 ~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 135 QVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp CEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3 322 56679998888 333 88887665 599999999999883
No 376
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.39 E-value=0.00074 Score=46.89 Aligned_cols=54 Identities=30% Similarity=0.448 Sum_probs=45.6
Q ss_pred cEEEE-EcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy882 23 SRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN 84 (253)
Q Consensus 23 ~~lfv-~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~ 84 (253)
..||+ +.|+++...||.++|+.||.| .|+++.|. .|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 33555 499999999999999999954 77888774 79999999999999998663
No 377
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.38 E-value=0.00014 Score=49.75 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=46.9
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC--Chhh-hccccchhhhhHHHHHHHHHhcCcee--cCeEEEEEecCCCCCc
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST--DSRF-ISRLRLDDFIYYILVEFSQTLHGAEM--YGSRLKVMEADPPKGD 243 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~--~~~~-~~~~~fg~v~~~~~~~Ai~~lnG~~i--~G~~l~v~~a~~p~~~ 243 (253)
..++|.||+ ++++..|.. |..++. +..+ ...+|||||.+.+.+.| +.++|..+ .|++|+|.+++ |+..
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a-~~~~~~~~~~~g~~l~v~~a~-~~~~ 80 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA-QSLCGEDLIIKGISVHISNAE-PKHN 80 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHH-HHTTTCEEEETTEEEEEECCC-CCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHH-HHHhcCCceeCCEEEEEEecC-CCCC
Confidence 568999999 677777777 887743 2111 12569998888444334 34676654 89999999999 5555
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.31 E-value=0.00019 Score=57.98 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=34.6
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEec
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~ 148 (253)
+|++||+|.+.++|.+|+..|||..+ +||+|.+.+.
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~-~gr~i~~~~~ 210 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWF-AGRKVVAEVY 210 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBS-SSSBCEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceE-CCeEEEEEEc
Confidence 78999999999999999999999999 9999999994
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=49.62 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred CCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 92 SKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 92 g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
|..+.|+... +.+||+|.+.++|.+|+. |||..+ .|+.|+|.++.
T Consensus 40 G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~v-~Gr~LkV~lkt 84 (91)
T 2dnr_A 40 GEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKEL-LNRTITIALKS 84 (91)
T ss_dssp CCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCEE-TTEEEEEEECC
T ss_pred CCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeEe-CCeEEEEEeCC
Confidence 5566665554 348999999999999998 999999 99999999955
No 380
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.00044 Score=48.75 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred cEEEEE-cCCCCCH-----HHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 23 SRLFIL-CGKDVTE-----DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 23 ~~lfv~-Lp~~~te-----~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
++|+|. |+.++-+ +.++++|..|+++......+. -.-..|.|.+.++|.+|-..|++..+ .|+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f--~g~~~r 77 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEF--LGKEMK 77 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEE--TTEECE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhcccee--cCceeE
Confidence 679999 9876632 567899999999988777665 33578999999999999999999999 699999
Q ss_pred EEEccc
Q psy882 97 VLIAAK 102 (253)
Q Consensus 97 v~~a~~ 102 (253)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 381
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.0004 Score=50.02 Aligned_cols=63 Identities=2% Similarity=-0.130 Sum_probs=44.8
Q ss_pred ccccccchh-hHHHHHhhh-hcCCCC-------Chhh---hccccchhhhh-HHH--HHHHHHhcCceecCeEEEEEecC
Q psy882 174 GALQSLTKA-LAQATSLLR-SAGLST-------DSRF---ISRLRLDDFIY-YIL--VEFSQTLHGAEMYGSRLKVMEAD 238 (253)
Q Consensus 174 ~~~~v~n~~-~~~~~~l~~-~~~~~~-------~~~~---~~~~~fg~v~~-~~~--~~Ai~~lnG~~i~G~~l~v~~a~ 238 (253)
..++|.||+ ++.+..|.. |..++. +..+ +..+|||||.+ ... .+||+.|++ ++|+.|.+..+.
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~ 86 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSP 86 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCC
Confidence 569999999 777777777 777632 3333 46679998888 333 889999843 677777776555
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.00034 Score=48.49 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=30.3
Q ss_pred EEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 115 ISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 115 ~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+||+|.+.++|.+|++ |||..+ .|+.|+|.+
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v-~Gr~L~V~~ 91 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKV-KGRAVKISG 91 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEE-TTEEEEEEC
T ss_pred EEEEEcChHHHHHHHh-cCCeee-CCeEEEEec
Confidence 9999999999999998 999999 999999998
No 383
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.0022 Score=44.68 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=45.1
Q ss_pred EEEEcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q psy882 25 LFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN 84 (253)
Q Consensus 25 lfv~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~ 84 (253)
++++.|+++...||.++|+.|| -..|+++.|. .|||.|.+++.|..|+..+.
T Consensus 9 ~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4445999999999999999999 4578888874 79999999999999998765
No 384
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.72 E-value=0.0028 Score=44.15 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCC-c-ccEEEEEecCHHHHHHHHHHhCCcccC
Q psy882 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGE-S-KGVAYIRFSKTSEAAKAVEEMNGEFLP 89 (253)
Q Consensus 21 ~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~-~-~g~~fV~f~~~~~A~~ai~~l~~~~~~ 89 (253)
.+-+|-|+ ||+..||+++.+.++..-.+.....+..+.+.+ + -.-|||.|.+.++.....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45679999 999999999999888765554433333332221 1 256999999999999999999999875
No 385
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.70 E-value=0.0011 Score=57.38 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=32.7
Q ss_pred cCcEEEEEcCCHHHHHHHHHhhCCCcCC--CCC--cEEEEec
Q psy882 111 GGQKISVQYTSPQSAAYARDKFHGFAYP--PGI--PMVVVPD 148 (253)
Q Consensus 111 ~~g~~fv~f~~~~~A~~A~~~l~g~~~~--~g~--~l~v~~~ 148 (253)
+||||||+|.+.++|++|+..|||..+. .|+ +|.+.|.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 5899999999999999999999998872 345 6888884
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.044 Score=38.41 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=57.1
Q ss_pred CCCCcEEEEE-cCCCCCHHHHHHhhcC-----CCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCC
Q psy882 19 EPPHSRLFIL-CGKDVTEDDLRQGFSP-----FGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92 (253)
Q Consensus 19 ~~~~~~lfv~-Lp~~~te~~l~~~f~~-----~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g 92 (253)
+.-.++|.|. ||..++++.|.-+|+. -|+|.++.... +-|+|+|.+...|++.++. ..+.+ .+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L--~~ 73 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL--HG 73 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS--SS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee--cC
Confidence 3456889999 9999999999999976 46788876533 4699999999999999753 24555 68
Q ss_pred CcEEEEEccc
Q psy882 93 KPIKVLIAAK 102 (253)
Q Consensus 93 ~~i~v~~a~~ 102 (253)
.+|.|....+
T Consensus 74 ~~LsV~P~~~ 83 (104)
T 2dhx_A 74 AQLSLRPAPP 83 (104)
T ss_dssp SBCEEEECCC
T ss_pred eEEEEEcCCC
Confidence 8888876544
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.00 E-value=0.026 Score=40.73 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCCCCcEEEEE-cCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 18 ~~~~~~~lfv~-Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
+....+-|-|- .|... -..+...|++||.|.+.... ....+-.|.|.+..+|++|+. .||..+. .+..|-
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIG 90 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIG 90 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEET-TTEECE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEE
Confidence 33445677776 77774 56778999999999887652 225699999999999999997 5998883 235566
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
|.+..
T Consensus 91 V~p~~ 95 (119)
T 1wwh_A 91 VKPCI 95 (119)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66543
No 388
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.82 E-value=0.0047 Score=55.28 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy882 22 HSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81 (253)
Q Consensus 22 ~~~lfv~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~ 81 (253)
.++|||..|...++.+|.+.|++||+|.++.+-.++ .-|+.|+|.+.+.+..++.
T Consensus 53 ~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 388999988889999999999999999999877663 4699999999999887753
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.018 Score=40.90 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=32.5
Q ss_pred CcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 112 GQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 112 ~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
-+-|+|+|.|..+|.+|...|+|..+ .|++|++.-
T Consensus 62 H~GAivef~d~~~AgKasLaL~G~ef-~gr~Lr~gT 96 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILNGSQF-QGKVIRSGT 96 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHSSEEE-TTEEEEEEC
T ss_pred CCceEEEEccchhhHHHHhhcCCeee-cCeEEEecC
Confidence 46699999999999999999999999 899999975
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.11 E-value=0.41 Score=43.35 Aligned_cols=55 Identities=31% Similarity=0.428 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCCHHHHHHhhcCCCceEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q psy882 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85 (253)
Q Consensus 23 ~~lfv~Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~ 85 (253)
..+++++|..|...+|.++|+.||.+ +|+++.+. .|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 45555689999999999999999954 66666553 699999999999999998853
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.96 E-value=0.16 Score=37.18 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=49.5
Q ss_pred EEEEE-cCCCCCHHHHHHhhcCCCceEE-EEEeec------------CCCC-CcccEEEEEecCHHHHHHHHHHhCCccc
Q psy882 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQE-IRCVKD------------RNTG-ESKGVAYIRFSKTSEAAKAVEEMNGEFL 88 (253)
Q Consensus 24 ~lfv~-Lp~~~te~~l~~~f~~~G~v~~-i~i~~~------------~~tg-~~~g~~fV~f~~~~~A~~ai~~l~~~~~ 88 (253)
.|-|- .|++.+ ..+.+.|++||.|.+ ....++ +.-+ ....+-.|+|.+..+|.+|+. .||..+
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 35555 765544 556789999999865 211110 0000 124688999999999999997 599998
Q ss_pred CCCCCcEEEEEcc
Q psy882 89 PNHSKPIKVLIAA 101 (253)
Q Consensus 89 ~~~g~~i~v~~a~ 101 (253)
.|..|-|.+..
T Consensus 87 --~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 --NGVLLGVIPYT 97 (132)
T ss_dssp --TTEECEEEECC
T ss_pred --CcEEEEEEECC
Confidence 57677776664
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.80 E-value=0.58 Score=32.78 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.2
Q ss_pred EEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEecC
Q psy882 115 ISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDF 149 (253)
Q Consensus 115 ~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~~~ 149 (253)
..|.|.+.++|.+|...||+..+ .|+.|+|-|+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f-~g~~~r~YFgq 82 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEF-LGKEMKLYFAQ 82 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEE-TTEECEEECCC
T ss_pred EEEEeCChHHHHHHHHHhcccee-cCceeEEEecC
Confidence 46779999999999999999999 99999999954
No 393
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.78 E-value=0.78 Score=33.10 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=28.6
Q ss_pred CcEEEEEcCC-HHHHHHHHHhhC--CCcCCCCCcEEEEe
Q psy882 112 GQKISVQYTS-PQSAAYARDKFH--GFAYPPGIPMVVVP 147 (253)
Q Consensus 112 ~g~~fv~f~~-~~~A~~A~~~l~--g~~~~~g~~l~v~~ 147 (253)
...|||+|.+ ..+|..|+..|+ +..| .|..+++..
T Consensus 55 ~~tgfVrf~~~~~~A~~av~~ln~~~~~i-~g~~~~~ev 92 (121)
T 1owx_A 55 AKEGIILFKEKAKEALGKAKDANNGNLQL-RNKEVTWEV 92 (121)
T ss_dssp CSEEEEEESSCHHHHHHHHHHTTTSCBCT-TSSSEEEEE
T ss_pred CCEEEEEECCChHHHHHHHHHhhcCCcEE-eCcEEEEEE
Confidence 4469999999 899999999996 5667 777777665
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=49.80 E-value=16 Score=26.10 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCcccCCCCCcEEEEEccccccCcCcccCcEEEEEcCCHHHHHHHHHhhCCCcCCCC-CcEEEEe
Q psy882 73 TSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPG-IPMVVVP 147 (253)
Q Consensus 73 ~~~A~~ai~~l~~~~~~~~g~~i~v~~a~~~~~~~~~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~ 147 (253)
.+++...+..+.. .|..++...+. +.++-.|.|.++.+|++||. .||..+ .| -.|=|.+
T Consensus 34 ~~~~~~VL~~F~~-----~G~Iv~~~~~~---------~~NWihI~Y~s~~~A~rAL~-kNG~ii-~g~~mIGV~p 93 (119)
T 1wwh_A 34 QASASYILLQFAQ-----YGNILKHVMSN---------TGNWMHIRYQSKLQARKALS-KDGRIF-GESIMIGVKP 93 (119)
T ss_dssp GGGHHHHHHHHHT-----TSCEEEEEECS---------SSSEEEEEESSHHHHHHHHT-TTTCEE-TTTEECEEEE
T ss_pred HHHHHHHHHHHHh-----hCcEEEeccCC---------CCCeEEEEeCCHHHHHHHHH-hCCeEe-cCCEEEEEEE
Confidence 4445555544421 47677666521 35679999999999999995 589888 54 4444555
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=47.84 E-value=19 Score=26.11 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=31.0
Q ss_pred cccCcEEEEEcCCHHHHHHHHHhhCCCcCCCCCcEEEEe
Q psy882 109 YRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147 (253)
Q Consensus 109 ~v~~g~~fv~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 147 (253)
+.+.++-.|+|.++.+|.+|+ .-||..+ .|.-|=|.+
T Consensus 59 f~g~NWikItYds~~~A~rAL-~~NG~ii-~G~mIGV~P 95 (132)
T 3p3d_A 59 FSGNSWTKITYDNPASAVDAL-LENGAVF-NGVLLGVIP 95 (132)
T ss_dssp CEETTEEEEEBSSHHHHHHHH-TTTTCEE-TTEECEEEE
T ss_pred cCCCcEEEEEcCCHHHHHHHH-HhCCeEe-CcEEEEEEE
Confidence 346788999999999999999 5789888 887666666
No 396
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.69 E-value=42 Score=21.17 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=39.8
Q ss_pred EEEEE--cCCCCCHHHHHHhhcCCCc-----eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcccCCCCCcEE
Q psy882 24 RLFIL--CGKDVTEDDLRQGFSPFGN-----IQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96 (253)
Q Consensus 24 ~lfv~--Lp~~~te~~l~~~f~~~G~-----v~~i~i~~~~~tg~~~g~~fV~f~~~~~A~~ai~~l~~~~~~~~g~~i~ 96 (253)
++||. -...+...+|...+..-+. |-.|.+.. .|.||+-. .+.|..+++.|++..+ .|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~-~~~~~~~~~~l~~~~i--~g~~~~ 70 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEIL-NGKGPHVLKVMKNTTV--KGKQLK 70 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEEC-TTCHHHHHHHHTTCCC-----CCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEEC-HHHHHHHHHHhccccC--cCceEE
Confidence 45664 3455666777777665443 34455433 37888876 4557778889999888 699998
Q ss_pred EEEcc
Q psy882 97 VLIAA 101 (253)
Q Consensus 97 v~~a~ 101 (253)
|+.+.
T Consensus 71 v~~~~ 75 (76)
T 2g0c_A 71 VNKAN 75 (76)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87764
Done!