Your job contains 1 sequence.
>psy882
MDRNYRINTHDRSREYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTG
ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYT
SPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLT
KALAQATSLLRSAGLSTDSRFISRLRLDDFIYYILVEFSQTLHGAEMYGSRLKVMEADPP
KGDRNRKRQRLDD
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy882
(253 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-070122-4 - symbol:rbm45 "RNA binding motif ... 255 7.8e-35 3
UNIPROTKB|Q8IUH3 - symbol:RBM45 "RNA-binding protein 45" ... 241 2.2e-32 3
MGI|MGI:2387367 - symbol:Rbm45 "RNA binding motif protein... 237 2.4e-32 3
RGD|628862 - symbol:Rbm45 "RNA binding motif protein 45" ... 243 2.6e-32 3
UNIPROTKB|Q8CFD1 - symbol:Rbm45 "RNA-binding protein 45" ... 243 2.6e-32 3
UNIPROTKB|F1RZE1 - symbol:RBM45 "Uncharacterized protein"... 240 2.8e-32 3
UNIPROTKB|F1PYP3 - symbol:RBM45 "Uncharacterized protein"... 240 3.0e-32 3
UNIPROTKB|Q3MHF0 - symbol:RBM45 "Uncharacterized protein"... 237 6.0e-32 3
UNIPROTKB|F1NEX8 - symbol:RBM45 "Uncharacterized protein"... 234 1.5e-30 3
FB|FBgn0035526 - symbol:CG1316 species:7227 "Drosophila m... 265 3.1e-28 2
DICTYBASE|DDB_G0289337 - symbol:DDB_G0289337 species:4468... 217 1.4e-19 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 142 9.3e-10 1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 145 1.6e-09 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 156 2.1e-09 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 136 4.7e-09 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 134 8.1e-09 1
CGD|CAL0005693 - symbol:orf19.444 species:5476 "Candida a... 133 1.1e-08 1
UNIPROTKB|Q5A297 - symbol:CaO19.444 "Potential RNA bindin... 133 1.1e-08 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 149 1.7e-08 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 149 1.7e-08 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 149 1.8e-08 1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 143 1.9e-08 2
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 148 2.2e-08 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 148 2.2e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 130 2.3e-08 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 147 3.0e-08 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 147 3.0e-08 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 147 3.0e-08 1
UNIPROTKB|C9JB16 - symbol:ELAVL2 "ELAV-like protein 2" sp... 129 3.1e-08 1
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 129 3.1e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 129 3.1e-08 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 147 3.1e-08 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 148 3.3e-08 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 147 3.3e-08 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 147 3.6e-08 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 151 3.6e-08 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 128 4.0e-08 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 127 5.2e-08 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 127 5.2e-08 1
ASPGD|ASPL0000013776 - symbol:AN3953 species:162425 "Emer... 145 6.4e-08 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 146 6.6e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 125 8.8e-08 1
UNIPROTKB|K7EJK3 - symbol:CELF4 "CUGBP Elav-like family m... 125 8.8e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 8.8e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 8.8e-08 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 8.8e-08 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 125 8.8e-08 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 125 8.8e-08 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 125 8.8e-08 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 125 8.8e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 124 1.1e-07 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 124 1.1e-07 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 124 1.1e-07 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 144 1.5e-07 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 140 1.5e-07 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 140 1.5e-07 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 125 1.8e-07 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 125 1.8e-07 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 1.8e-07 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 125 1.8e-07 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 1.8e-07 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 142 1.8e-07 1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 131 1.9e-07 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 122 1.9e-07 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 131 2.0e-07 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 142 2.2e-07 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 142 2.2e-07 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 142 2.2e-07 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 142 2.2e-07 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 142 2.2e-07 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 142 2.2e-07 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 142 2.2e-07 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 145 2.5e-07 1
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m... 121 2.5e-07 1
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 130 2.7e-07 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 140 2.9e-07 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 140 3.0e-07 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 120 3.3e-07 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 136 3.4e-07 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 133 3.5e-07 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 3.5e-07 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 119 4.2e-07 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 119 4.2e-07 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 119 4.2e-07 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 119 4.2e-07 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 118 5.5e-07 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 118 5.5e-07 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 118 5.5e-07 1
UNIPROTKB|G4MY51 - symbol:MGG_01274 "RNA-binding protein"... 138 6.1e-07 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 137 6.2e-07 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 131 6.5e-07 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 135 6.6e-07 2
ZFIN|ZDB-GENE-040426-1076 - symbol:eif3g "eukaryotic tran... 135 6.9e-07 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 117 7.2e-07 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 140 7.2e-07 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 7.5e-07 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 123 7.5e-07 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 123 7.5e-07 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 138 7.5e-07 1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 131 8.3e-07 2
WARNING: Descriptions of 430 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 255 (94.8 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 49/90 (54%), Positives = 67/90 (74%)
Query: 11 DRSREYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRF 70
+R Y DEPP+SRLF++ K +TED +R+ F+ FG IQ+I VKD+ T ESKGVA+I+F
Sbjct: 5 NRPSSYLDEPPNSRLFLVTSKSITEDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKF 64
Query: 71 SKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
+K+S+A A+EEM+G L +KPIKV IA
Sbjct: 65 AKSSQACTAMEEMHGRCLAEGTKPIKVFIA 94
Score = 160 (61.4 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TEDDL++ F +G+I+ ++++ TG+SKG+ Y+RF K
Sbjct: 103 RDVEDEEL-TRIFVMIPKTFTEDDLKETFKVYGDIEYAIIIRNKTTGDSKGLGYVRFHKP 161
Query: 74 SEAAKAVEEMNGEF 87
S+AAKAVE + F
Sbjct: 162 SQAAKAVENCDKTF 175
Score = 85 (35.0 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 108 GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPG 140
G+ GQ + V+Y++ SA YA++K +GF YPPG
Sbjct: 270 GFSKGQVV-VRYSNLGSAVYAKEKLNGFEYPPG 301
Score = 79 (32.9 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
T+HG + G ++KVM ADPPK + + KRQR
Sbjct: 437 TMHGKVVNGVKMKVMLADPPK-EESHKRQR 465
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 241 (89.9 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 45/84 (53%), Positives = 68/84 (80%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K E LR+ FSPFG+IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPNDTKPIKVFIA 104
Score = 157 (60.3 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEF 87
S+AA+A+E + F
Sbjct: 172 SQAAQAIENCDRSF 185
Score = 80 (33.2 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 291 VQYFNVASAIYAKYKLHGFQYPPG 314
Score = 77 (32.2 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + N KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPREESN-KRQR 474
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 237 (88.5 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 45/84 (53%), Positives = 69/84 (82%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG+IQ+I V+D++T ESKGVA+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L P+ +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPSDTKPIKVFIA 104
Score = 161 (61.7 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQK 114
S+AA+A+E + F ++P K ++ E ++ Y G++
Sbjct: 172 SQAAQAIENCDRSFRALLAEP-KNKVSGSPE-QDDYSSGRQ 210
Score = 84 (34.6 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPGIPMVV 145
VQY + SA YA+ K HGF YPPG +VV
Sbjct: 291 VQYFNVASAIYAKYKLHGFQYPPGNRIVV 319
Score = 77 (32.2 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + ++KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPR-EESKKRQR 474
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 243 (90.6 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 45/84 (53%), Positives = 69/84 (82%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG+IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPNDTKPIKVFIA 104
Score = 161 (61.7 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 35/98 (35%), Positives = 61/98 (62%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEFLPNHSKPI-KVLIAAKLEFKEGYR 110
S+AA+A+E + F ++P KVL + + ++ R
Sbjct: 172 SQAAQAIENCDRSFRALLAEPKNKVLESPEQDYYSSVR 209
Score = 80 (33.2 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 291 VQYFNVASAVYAQYKLHGFQYPPG 314
Score = 74 (31.1 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + ++KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPR-EVSKKRQR 474
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 243 (90.6 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 45/84 (53%), Positives = 69/84 (82%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG+IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLGPNDTKPIKVFIA 104
Score = 161 (61.7 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 35/98 (35%), Positives = 61/98 (62%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEFLPNHSKPI-KVLIAAKLEFKEGYR 110
S+AA+A+E + F ++P KVL + + ++ R
Sbjct: 172 SQAAQAIENCDRSFRALLAEPKNKVLESPEQDYYSSVR 209
Score = 80 (33.2 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 291 VQYFNVASAVYAQYKLHGFQYPPG 314
Score = 74 (31.1 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + ++KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPR-EVSKKRQR 474
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 240 (89.5 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 45/84 (53%), Positives = 67/84 (79%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K E LR+ FSPFG IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLSPNDTKPIKVFIA 104
Score = 157 (60.3 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEF 87
S+AA+A+E + F
Sbjct: 172 SQAAQAIENCDRSF 185
Score = 80 (33.2 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 291 VQYFNVASAIYAKYKLHGFQYPPG 314
Score = 77 (32.2 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + N KRQR
Sbjct: 446 TLHGKILNGVRLKVMLADSPREESN-KRQR 474
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 240 (89.5 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 45/84 (53%), Positives = 67/84 (79%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K E LR+ FSPFG IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L PN +KPIKV IA
Sbjct: 81 RAMEEMHGQCLSPNDTKPIKVFIA 104
Score = 157 (60.3 bits), Expect = 8.6e-19, Sum P(3) = 8.6e-19
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEF 87
S+AA+A+E + F
Sbjct: 172 SQAAQAIENCDRSF 185
Score = 80 (33.2 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 295 VQYFNVASAIYAKYKLHGFQYPPG 318
Score = 77 (32.2 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + N KRQR
Sbjct: 450 TLHGKILNGVRLKVMLADSPREESN-KRQR 478
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 237 (88.5 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 44/84 (52%), Positives = 68/84 (80%)
Query: 18 DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
DEPP+SR+F++ K +E LR+ FSPFG IQ+I V+D++T ESKG+A+++F+++S+A
Sbjct: 21 DEPPNSRIFLVISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80
Query: 78 KAVEEMNGEFL-PNHSKPIKVLIA 100
+A+EEM+G+ L P+ +KPIKV IA
Sbjct: 81 RAMEEMHGQCLTPSDTKPIKVFIA 104
Score = 157 (60.3 bits), Expect = 8.0e-19, Sum P(3) = 8.0e-19
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F FG+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 113 RDVEDEEL-TRIFVMIPKSYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKP 171
Query: 74 SEAAKAVEEMNGEF 87
S+AA+A+E + +
Sbjct: 172 SQAAQAIENCDRSY 185
Score = 80 (33.2 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPG 140
VQY + SA YA+ K HGF YPPG
Sbjct: 289 VQYFNVASAIYAKYKLHGFQYPPG 312
Score = 77 (32.2 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 221 TLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
TLHG + G RLKVM AD P+ + N KRQR
Sbjct: 444 TLHGKILNGVRLKVMLADSPREESN-KRQR 472
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 234 (87.4 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 44/88 (50%), Positives = 67/88 (76%)
Query: 13 SREYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
S E DEPP+SR+F++ GKD E +R+ F+PFG+IQ I ++D+ T ES+G+A+I+F++
Sbjct: 44 SAECLDEPPNSRVFVVLGKDAGEALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFAR 103
Query: 73 TSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
+S+A +A+EEM+G L +KPIKV IA
Sbjct: 104 SSQACRAMEEMHGRSLVPDTKPIKVFIA 131
Score = 162 (62.1 bits), Expect = 8.5e-19, Sum P(3) = 8.5e-19
Identities = 30/74 (40%), Positives = 51/74 (68%)
Query: 14 REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKT 73
R+ DE +R+F++ K TE+DLR+ F +G+I+ +K++ TGESKG+ Y+R+ K
Sbjct: 140 RDVEDEEL-TRIFVMIPKTYTEEDLREKFKMYGDIEYCSIIKNKTTGESKGLGYVRYLKP 198
Query: 74 SEAAKAVEEMNGEF 87
S+AA+A+EE + +
Sbjct: 199 SQAARAIEECDRSY 212
Score = 87 (35.7 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPGIPMVVV 146
+QY++ SA YA+ K HGF YPPG + V+
Sbjct: 312 IQYSTAASAIYAKYKLHGFEYPPGNRLTVI 341
Score = 62 (26.9 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 222 LHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
LHG + G RLKV AD P + N KRQR
Sbjct: 473 LHGKIVNGVRLKVRLADSPTEESN-KRQR 500
>FB|FBgn0035526 [details] [associations]
symbol:CG1316 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P11940 eggNOG:NOG145324
OMA:DIWVVKD GeneTree:ENSGT00680000100059 EMBL:BT001728
RefSeq:NP_647887.1 UniGene:Dm.14909 SMR:Q9VZE4 IntAct:Q9VZE4
MINT:MINT-906283 EnsemblMetazoa:FBtr0073233 GeneID:38526
KEGG:dme:Dmel_CG1316 UCSC:CG1316-RA FlyBase:FBgn0035526
InParanoid:Q9VZE4 OrthoDB:EOG4KKWJ8 GenomeRNAi:38526 NextBio:809099
Uniprot:Q9VZE4
Length = 470
Score = 265 (98.3 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 50/90 (55%), Positives = 71/90 (78%)
Query: 14 REYN--DEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
+EY+ D+PP SRLFI+C K TE+D R+ FSP+G I++I VKD++T E+KG+AY++FS
Sbjct: 17 QEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFS 76
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101
KTS+AAKA EEMNG+ + + +KVL+AA
Sbjct: 77 KTSDAAKAQEEMNGKTIGKMDRTLKVLVAA 106
Score = 156 (60.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 33/99 (33%), Positives = 58/99 (58%)
Query: 1 MDRNYRI----NTHDRS-REYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVK 55
MDR ++ N + S + N++ + RLFI+ K TE+D+R+ FS +G+++ + VK
Sbjct: 96 MDRTLKVLVAANRNQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVESVTIVK 155
Query: 56 DRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
++N G KG Y+RF+K AA A E + ++ ++P
Sbjct: 156 EKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEP 194
Score = 84 (34.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 56 DRNTGESKGVA-YIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL-IAAKLEF-----KEG 108
D N ++ +A ++R A + E+N N + ++ I L++ + G
Sbjct: 243 DWNVSQNNDMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMREHG 302
Query: 109 YRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVV 145
R + + V Y +P++A YA+DK HG YP G ++V
Sbjct: 303 PRTNEALVV-YDNPEAAIYAKDKLHGLEYPMGERIIV 338
Score = 75 (31.5 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 210 FIYYILVEFSQ----TLHGAEMYGSRLKVMEADPPKG----DRNRKRQR 250
++ Y VE +Q TL+GAE+ G+++KVMEA+ G D RKR R
Sbjct: 420 YVKYAEVESAQLAIRTLNGAEICGTKIKVMEAEERSGSDGDDGGRKRLR 468
>DICTYBASE|DDB_G0289337 [details] [associations]
symbol:DDB_G0289337 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289337 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000139 eggNOG:NOG145324 RefSeq:XP_636266.1
ProteinModelPortal:Q54HN5 EnsemblProtists:DDB0188369 GeneID:8627085
KEGG:ddi:DDB_G0289337 InParanoid:Q54HN5 OMA:MESINIS Uniprot:Q54HN5
Length = 1528
Score = 217 (81.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 46/98 (46%), Positives = 66/98 (67%)
Query: 6 RINTHDRSREYNDE-PPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+IN ++ + E P+SR+FI+C K +TE +L F +G+I+ R V D++T ESKG
Sbjct: 749 QINQEILEQQQDQELVPYSRIFIICNKSITEKNLEDCFKVYGSIESCRIVIDKDTNESKG 808
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFLPNHSK--PIKVLIA 100
AYI+++KTS AA A+EEMNG+ L S PI+VLIA
Sbjct: 809 YAYIKYTKTSSAALAIEEMNGKILEMDSSCSPIRVLIA 846
Score = 204 (76.9 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 40/98 (40%), Positives = 67/98 (68%)
Query: 13 SREYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
S + D PP+SRLF++C K +TE +L+ F FGN++ +R +++++T +SKG A+I+FSK
Sbjct: 858 SSDPEDHPPNSRLFVVCNKSLTEQELKNKFKEFGNLENVRLIREKSTNDSKGCAFIKFSK 917
Query: 73 TSEAAKAVEEMNGEFLPNHSK--PIKVLIAA-KLEFKE 107
S AA A+E +N + N + P+KV IA K+++ +
Sbjct: 918 ASTAAIAMESIN---ISNTGEEYPLKVFIAQPKVKYNK 952
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 24 RLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
RLF++C K +++++L + FS + ++ KD+NTG+SKG AY+ +S A A ++
Sbjct: 1259 RLFVVCHKSISQENLYRLFSRYPGMEYCDLKKDKNTGKSKGFAYVNYSSPQAALLAKNDL 1318
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKE 107
NG P S +KV+ A L K+
Sbjct: 1319 NGIKYPT-SHTLKVVFAEPLGIKQ 1341
Score = 60 (26.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPGIPMVVV 146
V Y+SPQ+A A++ +G YP + VV
Sbjct: 1303 VNYSSPQAALLAKNDLNGIKYPTSHTLKVV 1332
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 142 (55.0 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 67 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 126
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 127 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 182
Query: 147 PDFSYGLP 154
GLP
Sbjct: 183 SSLGSGLP 190
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 145 (56.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 38/96 (39%), Positives = 52/96 (54%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + +E L FS FG I E+ +KDR T +S+G A++ + +A
Sbjct: 5 DRP--GKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFK-EGYRG 111
A EMNG+ P KPIKV A K +F+ G RG
Sbjct: 63 KDAAREMNGK--PLDGKPIKVEQATKPQFETSGRRG 96
Score = 50 (22.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 106 KEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151
++GY GG++ P + +Y RD + G+ P P SY
Sbjct: 248 RDGYGGGREPRGYIDRPSAGSY-RDPYDGYGNSRSAPPSRGPPPSY 292
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 156 (60.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FSPFG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 136 (52.9 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG-EFLPNHS 92
TE++L FS G I +R V DR TG +G A+I F++ A +AVE+MNG EF +
Sbjct: 17 TEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEF---NG 73
Query: 93 KPIKVLIAAK 102
+P++V +A K
Sbjct: 74 RPLRVNLANK 83
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 134 (52.2 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 48 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 107
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 108 NKLDAENAIVHMGGQWL 124
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 6 RINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+IN + N P H RLF+ G D ++ L++ FS + ++ ++ DR T ++KG
Sbjct: 39 KINPAKQVTAPNWNPKHFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKG 98
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96
++ F K+ + A +EMNG+++ H +K
Sbjct: 99 FGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLK 130
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 6 RINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+IN + N P H RLF+ G D ++ L++ FS + ++ ++ DR T ++KG
Sbjct: 39 KINPAKQVTAPNWNPKHFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKG 98
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIK 96
++ F K+ + A +EMNG+++ H +K
Sbjct: 99 FGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLK 130
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 149 (57.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG+I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG--LRL 86
Query: 91 HSKPIKVLIA 100
SK IKV A
Sbjct: 87 QSKTIKVSFA 96
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 149 (57.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 149 (57.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG+I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 186 SSEPITVKFAA 196
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 263 GQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNG 318
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 143 (55.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 37/95 (38%), Positives = 50/95 (52%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A+I F ++A
Sbjct: 5 DRP--GKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
AV +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KAAVRDMNGKSLDG--KAIKVAQATKPAFESGRRG 95
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 106 KEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
++GY G + + P +Y RD F + P P SYG
Sbjct: 263 RDGYGGRDRDYADH--PSGGSY-RDPFESYGDPRSAAPARGPPPSYG 306
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 148 (57.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ F PFG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+LR FS G ++ + ++D+ G S G ++ + +A +A+ +NG L
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG--LRL 86
Query: 91 HSKPIKVLIA 100
SK IKV +A
Sbjct: 87 QSKTIKVSVA 96
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 148 (57.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ ED L Q F+ +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 15 ETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDG- 73
Query: 92 SKPIKVLIAAKL--EFKEGYRGG 112
+ I+V A K E + GYRGG
Sbjct: 74 -RQIRVDQAGKSSGERRGGYRGG 95
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 175 SSEPITVKFAA 185
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 84 NG 85
NG
Sbjct: 306 NG 307
>UNIPROTKB|C9JB16 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161628 EMBL:AL445623 HGNC:HGNC:3313 IPI:IPI00645584
ProteinModelPortal:C9JB16 SMR:C9JB16 STRING:C9JB16
Ensembl:ENST00000423281 ArrayExpress:C9JB16 Bgee:C9JB16
Uniprot:C9JB16
Length = 90
Score = 129 (50.5 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P +
Sbjct: 1 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 60
Query: 93 KPIKVLIA 100
+PI V A
Sbjct: 61 EPITVKFA 68
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 129 (50.5 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 46 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 100
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 129 (50.5 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E+ L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 15 DTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDG- 73
Query: 92 SKPIKVLIAAKL--EFKEGYRGG 112
+ I+V A K + + GYRGG
Sbjct: 74 -RQIRVDQAGKSSGDRRGGYRGG 95
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 147 (56.8 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 123 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 182
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 183 SSEPITVKFAA 193
Score = 111 (44.1 bits), Expect = 0.00062, P = 0.00062
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 84 NG 85
NG
Sbjct: 314 NG 315
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 148 (57.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T DD+R F+PFG I + R VKD
Sbjct: 73 MGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMA 132
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG ++ F +A A+++M G++L
Sbjct: 133 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL 162
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I E+R D
Sbjct: 183 YETNTKHLSFDEVVNQSSP-SNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD--- 238
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG L H
Sbjct: 239 ---KGYSFVRFNSHESAAHAIVSVNGTSLEGH 267
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 147 (56.8 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
+ ++ ++N S + D H +F+ +++ DD+R F+PFG I + R VKD
Sbjct: 74 LGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLA 133
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG +I F +A A+++MNG++L
Sbjct: 134 TGKSKGYGFISFINKWDAESAIQQMNGQWL 163
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 147 (56.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ +T+ D+ FS FG I R + D+ TG S+GVA+IRF K SEA +A+ NG P
Sbjct: 142 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 201
Query: 91 HSKPIKVLIAA 101
S+PI V AA
Sbjct: 202 SSEPITVKFAA 212
Score = 111 (44.1 bits), Expect = 0.00069, P = 0.00069
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 84 NG 85
NG
Sbjct: 333 NG 334
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 151 (58.2 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 40/130 (30%), Positives = 69/130 (53%)
Query: 14 REYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
+E D+ S L++ + VT+D LR+ F+PFG I + ++D + G S+G ++ FS
Sbjct: 318 KEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFST 376
Query: 73 TSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKF 132
EA +A+ EMNG+ + +KP+ V +A + E ++ Q ++ + A R +
Sbjct: 377 PEEATRAITEMNGKMIV--TKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQM 434
Query: 133 HGFAYPPGIP 142
YPPG P
Sbjct: 435 ----YPPGGP 440
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 128 (50.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG-EFLPNHS 92
T+D LR+GFS +G I+E VKDR+T S+G ++RF+ EA A+ MN EF
Sbjct: 14 TDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEF---DG 70
Query: 93 KPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAY 127
+ I+V A+ E GG + Y SP Y
Sbjct: 71 RIIRVDKAS--ERPAARNGGFQGRGGYNSPADGGY 103
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 127 (49.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ TEDDLR+ FS G + + + D TG SKG Y+R EA +A+E ++G L N
Sbjct: 13 EATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNR 72
Query: 92 SKPIKVLIAAKLEFKEGYRGGQ 113
+ V K + R G+
Sbjct: 73 VITVSVARPQKQATRPAPRRGK 94
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 127 (49.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ TEDDLR+ FS G + + + D TG SKG Y+R EA +A+E ++G L N
Sbjct: 13 EATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNR 72
Query: 92 SKPIKVLIAAKLEFKEGYRGGQ 113
+ V K + R G+
Sbjct: 73 VITVSVARPQKQATRPAPRRGK 94
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 145 (56.1 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 19 EPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+P H RLF+ L G +VT+D L + FS + ++Q+ R ++D+ T +SKG ++ FS +
Sbjct: 223 DPAHFRLFVGNLAG-EVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDY 281
Query: 77 AKAVEEMNGEFLPNH 91
KA EM G+++ +H
Sbjct: 282 FKAAREMQGKYIGSH 296
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 146 (56.5 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 1 MDRNYRIN---THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKD 56
+DR ++N + + D H +F+ +V LR+ F PFG++ + + ++D
Sbjct: 110 LDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRD 169
Query: 57 RNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
NT +SKG ++ + K EA +A+E+MNG++L
Sbjct: 170 TNTTKSKGYGFVSYPKREEAERAIEQMNGQWL 201
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSENRSRGYRGG 96
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 19 EPPHS--RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
+PP +LF+ + K +EDD+R+ F FGNI+E ++ + G SKG A++++S +E
Sbjct: 23 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAE 81
Query: 76 AAKAVEEMNG-EFLPNHSKPIKVLIA 100
A A+ ++G + +P S + V A
Sbjct: 82 AQAAINALHGSQTMPGASSSLVVKFA 107
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 41/127 (32%), Positives = 59/127 (46%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG----GQKISVQYTSPQSAAYARDKF 132
A +MNG+ L K IKV A K F+ Y G Y+S + +RD
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFENVYLSPRDDGYSTKDSYSSRDYPS-SRDT- 118
Query: 133 HGFAYPP 139
+A PP
Sbjct: 119 RDYAPPP 125
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79
P + LF+ K T + LR F+ FG + + + V DR +G SKG ++R++ ++AK
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 80 VEEMNGEFL 88
+ M+G+FL
Sbjct: 114 IAGMDGKFL 122
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
TEDDL FS GN+ +R V DR TG +G A++ F++ + A +AV++ NG
Sbjct: 16 TEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNG 67
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 125 (49.1 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
TEDDL FS GN+ +R V DR TG +G A++ F++ + A +AV++ NG
Sbjct: 16 TEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNG 67
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ TE+ L Q FS +G + E+ VKDR + S+G ++ F +A A+ MNG+ +
Sbjct: 16 ETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKL--EFKEGYRGG 112
+ I+V A K + + GYRGG
Sbjct: 75 -RQIRVDQAGKSSNDRRGGYRGG 96
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVT D+L+ F +G I+E + + DR TG SKG A+I + A +AV + NG L
Sbjct: 28 DVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL--Q 85
Query: 92 SKPIKVLIA 100
+ I+V IA
Sbjct: 86 GRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVT D+L+ F +G I+E + + DR TG SKG A+I + A +AV + NG L
Sbjct: 28 DVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL--Q 85
Query: 92 SKPIKVLIA 100
+ I+V IA
Sbjct: 86 GRKIRVNIA 94
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 144 (55.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 1 MDRNYRIN--THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDR 57
+++ ++N T ++ D H +F+ ++ + LR+ F+PFG I R V+D
Sbjct: 71 LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDP 130
Query: 58 NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+T +SKG A++ F K +EA A++ MNG+++ + S
Sbjct: 131 HTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRS 165
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T +D++ F+PFG I + R VKD
Sbjct: 68 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 127
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG ++ F +A A+++M G++L
Sbjct: 128 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL 157
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T +D++ F+PFG I + R VKD
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG ++ F +A A+++M G++L
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL 161
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSENRSRGYRGG 96
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T DD+R F+PFG I + R VKD TG+SKG ++ F
Sbjct: 105 SSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFY 164
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 165 NKLDAENAIVHMGGQWL 181
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 131 (51.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 35/96 (36%), Positives = 49/96 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGG 112
A +MNG+ L K IKV A K F+ G R G
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGGRRG 96
Score = 48 (22.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 106 KEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
++GY GG+ Y+ S RD + + P P SYG
Sbjct: 256 RDGYGGGR--DRDYSDHPSGGSYRDSYESYGNSRSAPPARGPPPSYG 300
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 122 (48.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L FS +G IQE+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDG- 74
Query: 92 SKPIKVLIAAKL--EFKEGYRGG 112
+ I+V A K + + GYRGG
Sbjct: 75 -RQIRVDQAGKSSNDRRGGYRGG 96
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 23 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 81
Query: 92 SKPIKV 97
+P++V
Sbjct: 82 -RPMRV 86
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/128 (35%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSAPNPVV 225
Query: 147 PDFSYGLP 154
GLP
Sbjct: 226 SSLGSGLP 233
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 22 HSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79
H +F+ LC ++ LR+ F FG + E + ++D NT + KG ++ + + +A +A
Sbjct: 131 HFHVFVGDLCS-EIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERA 189
Query: 80 VEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQK 114
++EMNG +L + I+ A + ++G RGG +
Sbjct: 190 IDEMNGAWLGRRT--IRTNWATRKPDEDGERGGDR 222
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 145 (56.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 11 DRSREYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAY 67
D EY P H + I G ++ LR+ F+PFG I + R V+D T +SKG +
Sbjct: 448 DEEMEYMP-PLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGF 506
Query: 68 IRFSKTSEAAKAVEEMNGEFLPNHS 92
+ F K SEA A+ MNG++L + S
Sbjct: 507 VSFIKKSEAESAITAMNGQWLGSRS 531
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 121 (47.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 24 RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LF+ + K +EDD+R+ F FGNI+E ++ + G SKG A++++S +EA A+
Sbjct: 19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 77
Query: 83 MNG-EFLPNHSKPIKVLIA 100
++G + +P S + V A
Sbjct: 78 LHGSQTMPGASSSLVVKFA 96
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 130 (50.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 4 NYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGES 62
N + E E +LF+ + K TEDD+RQ F PFG I+E ++ + G S
Sbjct: 36 NRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPD-GAS 94
Query: 63 KGVAYIRFSKTSEAAKAVEEMNG-EFLPNHSKPIKVLIA 100
KG A+++F EA A+ ++G + +P S + V A
Sbjct: 95 KGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYA 133
Score = 49 (22.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 119 YTSPQSAAYARDKFHGF---AYPPGIPMVVVPDFSYG 152
Y +P AA A HG PP +P +P+F+ G
Sbjct: 191 YMNPM-AALATQIPHGLNGTGQPPSLPSPTMPNFNMG 226
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 140 (54.3 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T +D++ F+PFG I + R VKD
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG ++ F +A A+++M G++L
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL 161
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I EIR D
Sbjct: 182 YESNTKQLSYDDVVNQSSP-SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 237
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 238 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGH 266
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 140 (54.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T +D++ F+PFG I + R VKD
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
TG+SKG ++ F +A A+++M G++L
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL 161
Score = 115 (45.5 bits), Expect = 0.00027, P = 0.00026
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 5 YRINTHDRSR-EYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTG 60
Y NT S E + + CG +TE +RQ FSPFG I EIR D
Sbjct: 182 YESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 237
Query: 61 ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG ++IRFS AA A+ +NG + H
Sbjct: 238 --KGYSFIRFSSHESAAHAIVSVNGTTIEGH 266
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 120 (47.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/93 (32%), Positives = 49/93 (52%)
Query: 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79
P S+LFI V E L+ FS FG + E+R D+ +G S+G ++ F++ +A A
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
Query: 80 VEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGG 112
+ M+G+ L +P+++ A E RGG
Sbjct: 99 KDAMDGKGLLG--RPLRISFAL-----ERVRGG 124
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 136 (52.9 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+ ++ LR+ FSPFG I + + + G SKG ++ FS EA KAV EMNG + +
Sbjct: 138 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA--T 193
Query: 93 KPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSY 151
KP+ V +A + E ++ + Q + + S ++ + A P G M +P + Y
Sbjct: 194 KPLYVALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPAPPSGYFMAAIPQYKY 251
Score = 108 (43.1 bits), Expect = 0.00082, P = 0.00082
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
G+D+ ++ L+ F FG ++ + D + G+SKG ++ F + +A KAV+EMNG+ L
Sbjct: 32 GEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKEL- 89
Query: 90 NHSKPIKVLIAAK 102
+ K I V A K
Sbjct: 90 -NGKQIYVGRAQK 101
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 133 (51.9 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 125 (49.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 24 RLFILCGKDVTEDD--LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
+LF+ G + D+ L FS FG I E+ VKDR T S+G +I F+ A+ A+
Sbjct: 7 KLFV-GGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 82 EMNGEFLPNHSKPIKVLIAAKLEFKEGYRGG 112
MNGE L + I+V A K G RGG
Sbjct: 66 AMNGESLDG--RQIRVDHAGKSA--RGSRGG 92
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 32/78 (41%), Positives = 40/78 (51%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
E L FS FG I E+ VKDR T S+G +I F+ A+ A+ MNGE L +
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDG--RQ 76
Query: 95 IKVLIAAKLEFKEGYRGG 112
I+V A K G RGG
Sbjct: 77 IRVDHAGKSA--RGTRGG 92
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 23 SRLFILCGKDVTEDD--LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
S+LF+ G DD L+Q F+ FG + E + DR TG S+G ++ FS A A+
Sbjct: 35 SKLFV-GGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 81 EEMNGEFLPNHSKPIKVLIAAK 102
+EM+G+ L + + I+V +A +
Sbjct: 94 KEMDGKEL--NGRQIRVNLATE 113
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
T+ LRQ FSPFG I+E R ++D T KG +I F +A KA++ ++G+ +
Sbjct: 19 TDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/78 (41%), Positives = 40/78 (51%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
E L FS FG I E+ VKDR T S+G +I F+ A+ A+ MNGE L +
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDG--RQ 76
Query: 95 IKVLIAAKLEFKEGYRGG 112
I+V A K G RGG
Sbjct: 77 IRVDHAGKSA--RGSRGG 92
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/78 (41%), Positives = 40/78 (51%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
E L FS FG I E+ VKDR T S+G +I F+ A+ A+ MNGE L +
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDG--RQ 76
Query: 95 IKVLIAAKLEFKEGYRGG 112
I+V A K G RGG
Sbjct: 77 IRVDHAGKSA--RGTRGG 92
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 118 (46.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
RLF+ + T + L+ F+ FG + + R + DR++G SKG ++ ++ +A KA E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 83 MNGEFL 88
MN +FL
Sbjct: 95 MNAKFL 100
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 138 (53.6 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/75 (33%), Positives = 49/75 (65%)
Query: 19 EPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+P H RLF+ L G + T++ L + FS + ++Q+ + ++D+ T +SKG ++ FS +
Sbjct: 266 DPTHLRLFVGNLAG-ETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDF 324
Query: 77 AKAVEEMNGEFLPNH 91
+A +EMNG+++ +H
Sbjct: 325 FQAAKEMNGKYIQSH 339
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 137 (53.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K++++ DL F+ FG I R + D +G SKGV +IRF + +EA +A++E+NG+
Sbjct: 139 KNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKG 198
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYAR 129
+++PI V A + ++ Y +PQ+AA R
Sbjct: 199 YAEPITVKFANNPSNSAKAQIAPPLTA-YLTPQAAAATR 236
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 131 (51.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 48 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 106
Query: 92 SKPIKV 97
+P++V
Sbjct: 107 -RPMRV 111
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 135 (52.6 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I EI +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 38 (18.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 108 GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
G R G Y+ S RD + + P P SYG
Sbjct: 258 GDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 302
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 135 (52.6 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+NTG+SKG A+I F + +AA+A+ ++G
Sbjct: 221 EDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGVSG 275
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 117 (46.2 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 32/78 (41%), Positives = 40/78 (51%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
E L FS FG I E+ VKDR T S+G +I F+ A+ A+ MNGE L +
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDG--RQ 76
Query: 95 IKVLIAAKLEFKEGYRGG 112
I+V A K G RGG
Sbjct: 77 IRVDHAGKSA--RGTRGG 92
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 140 (54.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 40/122 (32%), Positives = 64/122 (52%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 354
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ---KISVQYTSPQSAAYARDKFHGFAYPPG 140
NG + SKP+ V +A + E ++ + Q +I+ P +A + + G + P
Sbjct: 355 NGRIVG--SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPA 412
Query: 141 IP 142
+P
Sbjct: 413 VP 414
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 123 (48.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 123 (48.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 123 (48.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 138 (53.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
M+R ++ D D +LF+ + GK T++D+R+ F PFGNI E ++ +
Sbjct: 77 MNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD- 131
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
G SKG A+++F +EA A+ ++G LP S + V A E + G R Q+++ Q
Sbjct: 132 GTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFA-DTEKERGLRRMQQVANQ 190
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LFI +++ E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 131 (51.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G G
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFERGRHG 95
Score = 42 (19.8 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 108 GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
G R G Y+ S RD + + P+ P SYG
Sbjct: 261 GDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYG 305
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 138 (53.6 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 20 PPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
PPH S +FI +DV E+DLR G I E+R +KDR++G+SKG A++ F A
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 78 KAVEEMNG-EF 87
KA+EE++ EF
Sbjct: 172 KAIEELHSKEF 182
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 136 (52.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 103 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 161
Query: 92 SKPIKV 97
+P+KV
Sbjct: 162 -RPMKV 166
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 7 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 64
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 65 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 97
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 134 (52.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 139 (54.0 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 41/148 (27%), Positives = 73/148 (49%)
Query: 6 RINTHDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
R+ +E D+ S L++ ++++ L++ FSPFG + + ++D N G SKG
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKG 359
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQS 124
++ F+ EA +A+ +++G+ + SKP+ V IA + E + Q V+ + Q
Sbjct: 360 SGFVAFATPEEATEAMSQLSGKMI--ESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 125 AAYARDKFHGFAYPPGIPMVVVPDFSYG 152
+ R YPPG P + F YG
Sbjct: 418 SVGPRMP----VYPPGGPGIGQQMF-YG 440
Score = 117 (46.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+VT+ L F G + +R +D T S G Y+ F+ +AA+A++E+N ++P +
Sbjct: 46 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLY 103
Query: 92 SKPIKVL 98
KPI+V+
Sbjct: 104 GKPIRVM 110
Score = 38 (18.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 117 VQYTSPQSAAYARDKFHG 134
VQY + +SA A +K +G
Sbjct: 169 VQYANEESAQKAIEKLNG 186
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 116 (45.9 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
TE+++ F+ G++ +R V DR TG +G A++ FS+ + A +AVE++NG
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNG 69
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 132 (51.5 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 81 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 108
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 130 (50.8 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 34/117 (29%), Positives = 63/117 (53%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
+P H RLF+ G DV ++ L Q FS + ++ + + V+DR G+++G ++ F + +
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 78 KAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG 134
KA E NG+++ S+P+K L A + K + I + +++ Y+R HG
Sbjct: 85 KAWREKNGKYIG--SRPVK-LSRATSDVKPNEVNEKTIDSKI---RNSLYSRTIHHG 135
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 20 PPHSR-LFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
PP R LF+ + GK +EDD+R+ F PFG I+E ++ + G SKG A++++S +EA
Sbjct: 139 PPEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPD-GASKGCAFVKYSSHAEAQ 197
Query: 78 KAVEEMNG-EFLPNHSKPIKVLIA 100
A+ ++G + +P S + V A
Sbjct: 198 AAISSLHGSQTMPGASSSLVVKFA 221
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 258 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 304
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRERDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 259 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 6 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 63
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A +MNG+ L K IKV A K F+ G RG
Sbjct: 64 KDAARDMNGKSLDG--KAIKVEQATKPSFESGRRG 96
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 108 GY--RGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
GY R G Y+ S RD + + P P SYG
Sbjct: 260 GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 306
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
N + P + LFI DVT+D LR+ F PFG I E + + D N G+SK ++RFS +
Sbjct: 191 NSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHN-GQSKFAGFVRFSSELD 249
Query: 76 AAKAVEEMNG 85
A+KA++ MNG
Sbjct: 250 ASKAIDAMNG 259
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 23 SRLFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
+ LF+ +D L Q FS FG +Q +R + D++TGE+KG +++F +T EA K +
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 82 EMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
EMNG + SK +KV + K E KE G+
Sbjct: 829 EMNGFRIG--SKFLKVKL--KNE-KESMNSGK 855
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/80 (38%), Positives = 41/80 (51%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+ E L FS FG I E+ VKDR T S+G +I F+ A+ A+ MNG+ L
Sbjct: 16 NTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSLDG- 74
Query: 92 SKPIKVLIAAKLEFKEGYRG 111
+ I+V A KL G RG
Sbjct: 75 -RQIRVDHAGKLA--RGTRG 91
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 39 RQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVL 98
R+ FSPFG I + + + G SKG ++ FS EA KAV EMNG + +KP+ V
Sbjct: 2 RKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLYVA 57
Query: 99 IAAKLEFKEGYRGGQ 113
+A + E ++ + Q
Sbjct: 58 LAQRKEERQAHLTNQ 72
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 131 (51.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I EI +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
+MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDVARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 40 (19.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 108 GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
G R G +Y+ S RD + + P P SYG
Sbjct: 258 GDRDGYGRDREYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 302
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 125 (49.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG+ L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGKSL--HGKAIKVEQAQKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 43/129 (33%), Positives = 65/129 (50%)
Query: 24 RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI +++ E DL+ F FG I E+ +KDR TG KG A++ + + A KA
Sbjct: 48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107
Query: 83 MNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGI 141
++ + LP ++PI+V K E RGG V+Y+S A A + HG PG
Sbjct: 108 LHEQKTLPGMNRPIQV----KPADSES-RGGCAF-VKYSSHAEAQAAINALHGSQTMPGA 161
Query: 142 PMVVVPDFS 150
+V F+
Sbjct: 162 SSSLVVKFA 170
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 11 DRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIR 69
D S ++++ + +LFI + TEDD+R F G++ E+ +KDR TGE +G +++
Sbjct: 111 DHS-DHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 169
Query: 70 FSKTSEAAKAVEEMNGEF-LPNHSKPIKVLIA 100
++ + EA +A+ ++ ++ LP PI+V A
Sbjct: 170 YATSEEAERAIRALHNQYTLPGAMGPIQVRYA 201
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 11 DRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIR 69
D S ++++ + +LFI + TEDD+R F G++ E+ +KDR TGE +G +++
Sbjct: 111 DHS-DHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 169
Query: 70 FSKTSEAAKAVEEMNGEF-LPNHSKPIKVLIA 100
++ + EA +A+ ++ ++ LP PI+V A
Sbjct: 170 YATSEEAERAIRALHNQYTLPGAMGPIQVRYA 201
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G I IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KP++++
Sbjct: 80 -KPVRIM 85
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G I IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KP++++
Sbjct: 80 -KPVRIM 85
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/78 (39%), Positives = 39/78 (50%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
E L FS FG I E+ VKDR T S+G +I F+ A+ + MNGE L +
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDG--RQ 76
Query: 95 IKVLIAAKLEFKEGYRGG 112
I+V A K G RGG
Sbjct: 77 IRVDHAGKSA--RGTRGG 92
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 146
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 147 NKLDAENAIVHMGGQWL 163
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 146
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 147 NKLDAENAIVHMGGQWL 163
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGE-----SKGVAYIRFSKTSEAAKAVEEMNG 85
K++T+ DL FSP+G I R + D TGE SKGV +IRF + EA +A++E+NG
Sbjct: 205 KNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Query: 86 EFLPNHSKPIKVLIA 100
N ++PI V A
Sbjct: 265 TTPKNSTEPITVKFA 279
Score = 134 (52.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 4 NYRINTHDRSREYNDEP-PHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGE 61
N N + N+EP P + L + + +++D++R F FG ++ + ++D+ TG+
Sbjct: 90 NNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQ 149
Query: 62 SKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
S G ++ + K +A KA+ +NG L N K IKV IA
Sbjct: 150 SLGYGFVNYVKQEDAEKAINALNGLRLQN--KTIKVSIA 186
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 103 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 161
Query: 92 SKPIKV 97
+P++V
Sbjct: 162 -RPMRV 166
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 131 (51.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I EI +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
+MNG+ L K IKV A K F+ G RG
Sbjct: 63 KDVARDMNGKSLDG--KAIKVEQATKPSFESGRRG 95
Score = 39 (18.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 108 GYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYG 152
G R G +Y+ S RD + + P P SYG
Sbjct: 258 GDRDGYGRDREYSDHPSGGSYRDSYESYGNSCSAPPTRGPPPSYG 302
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 103 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 162
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 163 NKLDAENAIVHMGGQWL 179
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS FG I R + D+ TG S+GV +IRF + EA +A++ +NG+ P
Sbjct: 163 KTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPG 222
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 223 ATEPITVKFA 232
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I+ I+ + D TG SKG +I FS + A KA+E++NG L
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG- 318
Query: 92 SKPIKV 97
+P+KV
Sbjct: 319 -RPMKV 323
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 6 RINTHDRSREYNDEPPHSR 24
R +HDR R + E SR
Sbjct: 41 RSRSHDRKRSRSKERKRSR 59
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 222 ATEPITVKFA 231
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 134 (52.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S + D H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFY 163
Query: 72 KTSEAAKAVEEMNGEFL 88
+A A+ M G++L
Sbjct: 164 NKLDAENAIVHMGGQWL 180
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 17 NDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
+ + H+ L+I VT +L++ F FG++ + + + D +TG S+ V ++ FS+ E
Sbjct: 191 SSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRRE 250
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIAAKL 103
A KAV MNG +P S PI V A +L
Sbjct: 251 ALKAVSSMNGANIPFQSTPIYVKFANQL 278
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 11 DRSREYNDEPPH-SRLFILCGKD-VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYI 68
D +RE + P S LF+ D V+E L++ FS FG + ++ + + T +S G Y+
Sbjct: 64 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
Query: 69 RFSKTSEAAKAVEEMNGEF 87
F+ +A AVE MNG+F
Sbjct: 124 WFNSKEDAQSAVEAMNGKF 142
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 125 (49.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSENRSRGYRGG 96
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 132 (51.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
S+LFI + ED LR+ F+ +G + + R + DR TG S+G ++ F+ + A+ A++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 82 EMNGEFLPNHSKPIKVLIAAKLEFKEGYRGG 112
++G L H + +KV A G+ GG
Sbjct: 100 ALDGRDL--HGRVVKVNYANDRTSGGGFGGG 128
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 133 (51.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 194 ATEPITVKFA 203
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 44/127 (34%), Positives = 64/127 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP +P VV
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSVPTPVV 225
Query: 147 PDFSYGL 153
G+
Sbjct: 226 TALGPGV 232
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNH 91
++++ L+ FS +G IQ + VK + TG S+G AYI ++ +A KA++++N + F NH
Sbjct: 15 ISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDDLNDQPFEGNH 74
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G I E+ +KDR T +S+G A++ F ++A
Sbjct: 7 DRP--GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 64
Query: 77 AKAVEEMNGEFLPNHSK 93
A +MNG+ +P+ ++
Sbjct: 65 KDAARDMNGKGVPSSTR 81
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
V E+DL Q FS FG I+ ++ V++ TG SKG A++ + +A KA++ +G+ L S
Sbjct: 55 VVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HGKDLQGRS 113
Query: 93 KPIKVLIAAKLEFKEGY 109
+ V IA E + Y
Sbjct: 114 --LVVRIAKSREQQHAY 128
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
V E+DL Q FS FG I+ ++ V++ TG SKG A++ + +A KA++ +G+ L S
Sbjct: 55 VVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HGKDLQGRS 113
Query: 93 KPIKVLIAAKLEFKEGY 109
+ V IA E + Y
Sbjct: 114 --LVVRIAKSREQQHAY 128
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 34 TEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSK 93
T+D LR+ FS +GN+ + ++DR T S+G ++ +S SEA AV M+G+ L
Sbjct: 15 TDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRV 74
Query: 94 PIKV 97
+K+
Sbjct: 75 SVKL 78
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 101 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 160
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 161 QQMGGQWL 168
Score = 115 (45.5 bits), Expect = 0.00027, P = 0.00027
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 5 YRINTHDRSR-EYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTG 60
Y NT S E + + CG +TE +RQ FSPFG I EIR D
Sbjct: 189 YESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 244
Query: 61 ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG ++IRFS AA A+ +NG + H
Sbjct: 245 --KGYSFIRFSSHESAAHAIVSVNGTTIEGH 273
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVNQSSP-SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 249 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVNQSSP-SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 249 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVNQSSP-SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 249 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 32/91 (35%), Positives = 43/91 (47%)
Query: 5 YRINTHDRSR-EYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTG 60
Y NT S E + + + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 248
Query: 61 ESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RFS AA A+ +NG + H
Sbjct: 249 --KGYSFVRFSSHESAAHAIVSVNGTTIEGH 277
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 221
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 222 ATEPITVKFA 231
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 163 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 222
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 223 ATEPITVKFA 232
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 163 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 222
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 223 ATEPITVKFA 232
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
H +F+ ++T +D++ F+PFG I + R VKD TG+SKG ++ F +A A+
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 81 EEMNGEFL 88
++M G++L
Sbjct: 165 QQMGGQWL 172
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 5 YRINTHDRSRE--YNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
Y NT S + N P S + CG +TE +RQ FSPFG I EIR D
Sbjct: 193 YESNTKQLSYDEVVNQSSP-SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD--- 248
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
KG +++RF+ AA A+ +NG + H
Sbjct: 249 ---KGYSFVRFNSHESAAHAIVSVNGTTIEGH 277
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 55/109 (50%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGTSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 133 (51.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 174 KTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 233
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 234 ATEPITVKFA 243
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 134 (52.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 39/109 (35%), Positives = 55/109 (50%)
Query: 19 EPPH-SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
E H +LFI ++ E L+ F G I E+ +KDR T +S+G A+I F ++A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSA 125
A ++MNG L H K IKV A K F+ G R S + SP +
Sbjct: 62 KNAAKDMNGTSL--HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMN--GEFLPN 90
+ E+ + Q F+ FGNI +I +KD+ T SKG A+I FS EA A+ N G FL N
Sbjct: 29 MNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGTFLEN 88
Query: 91 HSKPIKV 97
+KP++V
Sbjct: 89 MNKPLQV 95
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 27/100 (27%), Positives = 51/100 (51%)
Query: 8 NTHDRSREYNDEPPHSR-LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGV 65
N + ++ +P S LFI +++L+Q F+P+GN+ + D+NT +SK
Sbjct: 271 NQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCF 330
Query: 66 AYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEF 105
++ + T A A++E+NG + K +KV + +F
Sbjct: 331 GFVSYDNTQSAIAAIQELNGRAI--EGKKLKVNFKREKQF 368
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
+R +D + L+I K +T+ ++ F+ +G I R + D+ +G S+GVA+IRF
Sbjct: 140 ARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFD 199
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101
K SEA +A++++NG S+PI V AA
Sbjct: 200 KRSEAEEAIKDLNGSKPSGASEPITVKFAA 229
Score = 111 (44.1 bits), Expect = 0.00074, P = 0.00074
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +NG
Sbjct: 294 GQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNG 349
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 112 (44.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 1 MDRNYRIN-THDRSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M + ++N S + D H +F+ ++T +D++ F+PFG I + R VKD
Sbjct: 64 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 123
Query: 59 TGESKGVAYIRF 70
TG+SKG ++ F
Sbjct: 124 TGKSKGYGFVSF 135
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 132 (51.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/106 (33%), Positives = 51/106 (48%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P +LFI + E L F +G + E+ +KDR T +S+G A++ F ++A
Sbjct: 5 DRP--GKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSP 122
A E+NG+ L KPIKV A K F R G S + P
Sbjct: 63 KDAARELNGKALDG--KPIKVEQATKPSFSTPSRRGPPTSPRSRGP 106
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+ ++ LR+ FSPFG I + + + G SKG ++ FS EA KAV EMNG + +
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA--T 360
Query: 93 KPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHGFAYPPGIPMVVVP 147
KP+ V +A + E ++ Y ++ +Y Q A R + A P G M VP
Sbjct: 361 KPLYVALAQRKEERQAY-----LTNEYM--QRMASVRAVPNQRAPPSGYFMTAVP 408
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 125 (49.1 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+ P
Sbjct: 162 KTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPA 221
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 222 ATEPITVKFA 231
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 8 NTHDRSREYNDE--PPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+ +DR+++Y D PP LFI + D+L F +GN+ R +T + KG
Sbjct: 253 SNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKG 312
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFL 88
Y++FS EA A+E MNGE++
Sbjct: 313 FGYVQFSSVDEAKAALEAMNGEYI 336
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 8 NTHDRSREYNDE--PPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKG 64
+ +DR+++Y D PP LFI + D+L F +GN+ R +T + KG
Sbjct: 253 SNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKG 312
Query: 65 VAYIRFSKTSEAAKAVEEMNGEFL 88
Y++FS EA A+E MNGE++
Sbjct: 313 FGYVQFSSVDEAKAALEAMNGEYI 336
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 43/128 (33%), Positives = 64/128 (50%)
Query: 32 DVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L N
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 91 HSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDKFHG-FAY---PPGIPMVVV 146
+PI V A K + K G R G + + Q+ D+ H FA PP +P V+
Sbjct: 170 --RPITVSYAFKKDSK-GERHGSAAE-RLLAAQNPLSQADRPHQLFADAPPPPSMPTPVM 225
Query: 147 PDFSYGLP 154
+P
Sbjct: 226 TALGAAMP 233
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 17 NDEPPHSRLFI--LCG--KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
ND P +L+I L G ++TE +L+Q F+PFG+I ++ +D TG+SKG +I+F K
Sbjct: 582 NDIP--LKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHK 639
Query: 73 TSEAAKAVEEMNG 85
SEA +A+ MNG
Sbjct: 640 ASEAIEALTVMNG 652
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 2 DRNYRINTHDRSREYNDEPPHSRLFILC-GKDVTED--DLRQGFSPF-GNIQEIRCVKDR 57
+R +I R +E +E L +L D+ D D+ + FS G +++I+C+KD+
Sbjct: 464 ERREKIREERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQ 523
Query: 58 NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97
+G+SKGVAY+ F T EA NG L N +PIK+
Sbjct: 524 RSGKSKGVAYVEFY-TQEAVIKALAANGMMLKN--RPIKI 560
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 17 NDEPPHSRLFI--LCG--KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
ND P +L+I L G ++TE +L+Q F+PFG+I ++ +D TG+SKG +I+F K
Sbjct: 582 NDIP--LKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHK 639
Query: 73 TSEAAKAVEEMNG 85
SEA +A+ MNG
Sbjct: 640 ASEAIEALTVMNG 652
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 2 DRNYRINTHDRSREYNDEPPHSRLFILC-GKDVTED--DLRQGFSPF-GNIQEIRCVKDR 57
+R +I R +E +E L +L D+ D D+ + FS G +++I+C+KD+
Sbjct: 464 ERREKIREERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQ 523
Query: 58 NTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKV 97
+G+SKGVAY+ F T EA NG L N +PIK+
Sbjct: 524 RSGKSKGVAYVEFY-TQEAVIKALAANGMMLKN--RPIKI 560
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 51 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 109 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 136
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LF+ + + E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 133 (51.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I+ + D TG SKG +I FS A KA+E++NG L
Sbjct: 256 NITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAG- 314
Query: 92 SKPIKV 97
+P+KV
Sbjct: 315 -RPMKV 319
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 133 (51.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
N +P +F+ ++ L+ F+PFG I + R V+D T +SKG ++ F K SE
Sbjct: 90 NSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSE 149
Query: 76 AAKAVEEMNGEFLPNHS 92
A A+ MNG++L + S
Sbjct: 150 AETAITAMNGQWLGSRS 166
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 125 (49.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
D E L Q FS +G I E+ VKDR T S+G ++ F +A A+ MNG+ +
Sbjct: 16 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG- 74
Query: 92 SKPIKVLIAAKLEFKE--GYRGG 112
+ I+V A K GYRGG
Sbjct: 75 -RQIRVDQAGKSSDNRSRGYRGG 96
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 132 (51.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 34/105 (32%), Positives = 60/105 (57%)
Query: 24 RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LF+ + GK +++ D+R+ F PFG+I+E ++ + G SKG A++++ +EA A+
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 83 MNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQY--TSPQS 124
++G LP S + V A E + G R Q+++ Q SP S
Sbjct: 154 LHGSRTLPGASSSLVVKFA-DTEKERGIRRMQQVASQLGVISPMS 197
Score = 122 (48.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 24 RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI +++ E DL+ F FG I E+ +KD+ TG KG A++ + A KA
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 83 MNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQ-SAAYARDKFHGF 135
++ + LP ++PI+V K EG RG +K+ V Q S A R F F
Sbjct: 68 LHEQKTLPGMNRPIQV----KPADSEG-RGDRKLFVGMLGKQLSDADVRKMFEPF 117
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
+R +D + L+I K +T+ D+ + F +G I R + D+ +G S+GVA+IRF
Sbjct: 110 ARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFD 169
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAA 101
K +EA A++++NG+ P ++ + V AA
Sbjct: 170 KRAEAEDAIKDLNGQKPPGAAEQMTVKFAA 199
Score = 110 (43.8 bits), Expect = 0.00083, P = 0.00083
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 25 LFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
+FI G+D E L Q F PFG + ++ ++D NT + KG ++ + EAA A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 84 NG 85
NG
Sbjct: 320 NG 321
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 121 (47.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 21 PHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKA 79
P ++L++ TED LR F FGN+ + V D+ KG A++R+ EA KA
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 80 VEEMNGEFL 88
++ M+G+FL
Sbjct: 135 IQGMHGKFL 143
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 236 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 290
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 236 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 290
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 129 (50.5 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 238 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 292
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 248 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 123 (48.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D N G+SKG ++ + K +A KAVEEMNG+
Sbjct: 112 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGK 167
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 250 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 304
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 273 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 331
Query: 92 SKPIKV 97
+P++V
Sbjct: 332 -RPMRV 336
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 274 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 332
Query: 92 SKPIKV 97
+P++V
Sbjct: 333 -RPMRV 337
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 18 DEPPHSRLFILCGKDVTEDD--LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
D P +LFI G ++ D+ L F +G I E+ +KDR T +S+G A++ F ++
Sbjct: 5 DRP--GKLFI-GGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRG 111
A A +MNG+ L K IKV A K F+ RG
Sbjct: 62 AKAAARDMNGKSLDG--KAIKVAQATKPAFESSRRG 95
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 128 (50.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 21 PHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
P I CG DV ++ L + F+ F + Q R V+D+ TG+SKG ++ F + ++
Sbjct: 194 PDDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFI 253
Query: 78 KAVEEMNGEFLPNHSKPIKV 97
+A++EM+G ++ S+PIK+
Sbjct: 254 RAMKEMDGRYVG--SRPIKL 271
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 132 (51.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 255
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 256 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 283
Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D N G+SKG ++ + K +A KAVEEMNG+
Sbjct: 101 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGK 156
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 130 (50.8 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 44/150 (29%), Positives = 76/150 (50%)
Query: 2 DRNYRINTHDRSR-EYNDEPPHSRLFIL-CGKDVTEDDLRQGF-SPFGNIQEIRCVKDRN 58
D+ +R+N S + D+ P +F+ DVT+ L + F + + +++ + V DR
Sbjct: 133 DQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRV 192
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
TG +KG ++RFS SE +A+ EMNG +P ++P+++ AA K+G G Q+ S Q
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAMTEMNG--VPCSTRPMRIGPAAS---KKGVTG-QRDSYQ 246
Query: 119 YTSPQSAAYARDKFHGFAYPPGIPMVVVPD 148
+S D + + G+ V D
Sbjct: 247 -SSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 131 (51.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 6 RINTHDRSREYNDEPPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGES 62
R+N +S N E + I G +V ++ L Q FS FG++ E R + D TG S
Sbjct: 163 RVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRS 222
Query: 63 KGVAYIRFSKTSEAAKAVEEMNGEFL 88
+G ++ F + ++A KA+ M+GE+L
Sbjct: 223 RGYGFVAFRERADAEKALTSMDGEWL 248
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 129 (50.5 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 24 RLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LF+ + GK +EDD+R+ F PFG I+E ++ + G SKG A++++S +EA A+
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPD-GASKGCAFVKYSSHAEAQAAISS 62
Query: 83 MNG-EFLPNHSKPIKVLIA 100
++G + +P S + V A
Sbjct: 63 LHGSQTMPGASSSLVVKFA 81
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 132 (51.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 283 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 310
Score = 122 (48.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
G++V +++LR+ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+ +
Sbjct: 128 GEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMS 186
Query: 90 NHS 92
S
Sbjct: 187 GKS 189
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 127 (49.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 33 VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHS 92
+ ++ LR+ FSPFG I + + + G SKG ++ FS EA KAV EMNG + +
Sbjct: 174 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA--T 229
Query: 93 KPIKVLIAAKLEFKEGYRGGQ 113
KP+ V +A + E ++ + Q
Sbjct: 230 KPLYVALAQRKEERQAHLTNQ 250
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 130 (50.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
++TED LR F PFG I I +KD +TG SKG +I FS + A +A+E++NG L
Sbjct: 264 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG- 322
Query: 92 SKPIKV 97
+P+++
Sbjct: 323 -RPMRI 327
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 129 (50.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +++ ++ Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Query: 91 HSKPIKVLIAAKLEFKEGY----RGGQKISVQYTSP---QSAAYARDKFHGFAYPPGIPM 143
++PI V A K G Q + +Y P Q+ + D AY P+
Sbjct: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPL 253
Query: 144 VVVPDFS 150
++ FS
Sbjct: 254 SLIARFS 260
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+ + F G+I+ + V+D+ TG+S G ++ +S ++A KA+ +NG L
Sbjct: 48 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG--LKL 105
Query: 91 HSKPIKVLIA 100
+K IKV A
Sbjct: 106 QTKTIKVSYA 115
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 129 (50.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +++ ++ Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Query: 91 HSKPIKVLIAAKLEFKEGY----RGGQKISVQYTSP---QSAAYARDKFHGFAYPPGIPM 143
++PI V A K G Q + +Y P Q+ + D AY P+
Sbjct: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPL 253
Query: 144 VVVPDFS 150
++ FS
Sbjct: 254 SLIARFS 260
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+ + F G+I+ + V+D+ TG+S G ++ +S ++A KA+ +NG L
Sbjct: 48 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG--LKL 105
Query: 91 HSKPIKVLIA 100
+K IKV A
Sbjct: 106 QTKTIKVSYA 115
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 132 (51.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 123 (48.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D N G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G D+ ++ L++ FS +G ++ + D TG+SKG ++ F K +A KAVEEMNG+
Sbjct: 199 GDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 44/148 (29%), Positives = 70/148 (47%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNT 59
+ R + T DR Y L++ D +D+ L++ FSPFG I + + +
Sbjct: 276 LKRKFEQVTQDRGIRYQG----INLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-- 329
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQY 119
G SKG ++ FS EA KAV EMNG + +KP+ V +A + E ++ + Q I +
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVSEMNGRIVA--TKPLYVALAQRKEERQAHLTNQYIQ-RM 386
Query: 120 TSPQSAAYARDKFHGFAYPPGIPMVVVP 147
S +S + + A P G + VP
Sbjct: 387 ASVRSGPNSLINAYQPA-PSGYSVAAVP 413
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 122 (48.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
G++V +++LR+ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+ +
Sbjct: 199 GEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMS 257
Query: 90 NHS 92
S
Sbjct: 258 GKS 260
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V +++L++ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 132 (51.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D N G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00076, P = 0.00076
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 132 (51.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V +++L++ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+
Sbjct: 199 GEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 114 (45.2 bits), Expect = 0.00077, P = 0.00077
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
+R ND+ S L++ K +T +L F PFG I R + D TG SKGV ++RF
Sbjct: 118 ARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFD 177
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
K EA A++ +NG S+ I V A
Sbjct: 178 KKDEADVAIKTLNGSIPSGCSEQITVKFA 206
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 354 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 381
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
G++V +++LR+ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+ +
Sbjct: 199 GEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMS 257
Query: 90 NHS 92
S
Sbjct: 258 GKS 260
Score = 114 (45.2 bits), Expect = 0.00079, P = 0.00079
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
DVTE L + FSP G + IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 21 DVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG- 79
Query: 92 SKPIKVL 98
KPI+++
Sbjct: 80 -KPIRIM 85
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 132 (51.5 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 25 LFILCGKDVTEDD-LRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEM 83
L+I D +D+ LR+ FSPFG+I + + + G SKG ++ FS EA KAV EM
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 393
Query: 84 NGEFLPNHSKPIKVLIAAKLEFKEGYRGGQ 113
NG + SKP+ V +A + E ++ + Q
Sbjct: 394 NGRIVG--SKPLYVALAQRKEERKAHLTNQ 421
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 30 GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGE 86
G++V ++ L++ FS FG ++ ++D + G+SKG ++ + K +A KAVEEMNG+
Sbjct: 239 GEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGK 294
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 129 (50.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 36/120 (30%), Positives = 61/120 (50%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
M+R ++ D D +LF+ + GK T++D+R+ F PFG I E ++ +
Sbjct: 77 MNRPIQVKPADSESRGEDR----KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD- 131
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGE-FLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQ 118
G SKG A+++F +EA A+ ++ LP S + V A E + G R Q+++ Q
Sbjct: 132 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFA-DTEKERGLRRMQQVATQ 190
Score = 111 (44.1 bits), Expect = 0.00090, P = 0.00090
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 19 EPPHSRLFI-LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
EP +LF+ + + E DL+ F FG I E+ +KD+ TG KG A++ + A
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 78 KAVEEMNGE-FLPNHSKPIKV 97
KA ++ + LP ++PI+V
Sbjct: 63 KAQSALHEQKTLPGMNRPIQV 83
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 108 (43.1 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 38/109 (34%), Positives = 52/109 (47%)
Query: 23 SRLFILCGKD--VTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
S+LFI G TE L + FS G + E + V DR + SKG ++ F+ EA KA+
Sbjct: 34 SKLFI-GGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 81 EEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYAR 129
E NG+ L + + I V A K + G GG I+ P A R
Sbjct: 93 MEFNGQQL--NGRTIFVDYA-KAKQSLGGGGGYPIARGPPDPAVIAATR 138
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 128 (50.1 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +++ ++ Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
Query: 91 HSKPIKVLIAAKLEFKEGY----RGGQKISVQYTSP---QSAAYARDKFHGFAYPPGIPM 143
++PI V A K G Q + +Y P Q+ + D AY P+
Sbjct: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPL 253
Query: 144 VVVPDFS 150
++ FS
Sbjct: 254 SLIARFS 260
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+D+ + F G+I+ + V+D+ TG+S G ++ +S ++A KA+ +NG L
Sbjct: 48 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG--LKL 105
Query: 91 HSKPIKVLIA 100
+K IKV A
Sbjct: 106 QTKTIKVSYA 115
WARNING: HSPs involving 280 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 253 240 0.00093 113 3 11 22 0.43 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 530
No. of states in DFA: 575 (61 KB)
Total size of DFA: 163 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.90u 0.16s 20.06t Elapsed: 00:00:01
Total cpu time: 19.92u 0.16s 20.08t Elapsed: 00:00:01
Start: Thu Aug 15 16:15:42 2013 End: Thu Aug 15 16:15:43 2013
WARNINGS ISSUED: 2