RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy882
(253 letters)
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 66.5 bits (162), Expect = 3e-15
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 18 DEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
+ + L++ L + +T+D L F +G+I + ++D+ TG +GVA++R++K E
Sbjct: 2 ESIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA 100
A +A+ +N S+P+ V +A
Sbjct: 61 AQEAISALNNVIPEGGSQPLSVRLA 85
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 62.2 bits (151), Expect = 1e-13
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
DVTE L + FSP G I IR +D T S G AY+ F + ++A +A++ MN + +
Sbjct: 10 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI-- 67
Query: 91 HSKPIKVLIAAK 102
KP++++ + +
Sbjct: 68 KGKPVRIMWSQR 79
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.9 bits (142), Expect = 3e-12
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K +T+ +L Q FS +G I R + D+ TG S+GV +IRF K EA +A++ +NG+
Sbjct: 16 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 75
Query: 91 HSKPIKVLIA 100
++PI V A
Sbjct: 76 ATEPITVKFA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 58.1 bits (140), Expect = 5e-12
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+D+T+ +L F G I R ++D TG S G A++ F+ ++ +A++ +NG +
Sbjct: 12 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-- 69
Query: 91 HSKPIKVLIA 100
+K +KV A
Sbjct: 70 RNKRLKVSYA 79
Score = 25.7 bits (56), Expect = 2.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 220 QTLHGAEMYGSRLKVMEADP 239
+ L+G + RLKV A P
Sbjct: 62 KVLNGITVRNKRLKVSYARP 81
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 57.6 bits (139), Expect = 1e-11
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 19 EPPHSRLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRN-TGESKGVAYIRFSKTSEA 76
+ S++ + + ++R+ FS FG ++ +R K TG +G ++ F +A
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 77 AKAVEEM-NGEFLPNHSKPIKVLIA 100
KA + + L + + + + A
Sbjct: 65 KKAFNALCHSTHL--YGRRLVLEWA 87
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 57.4 bits (138), Expect = 1e-11
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+ P+ L + TE DLR+ FS +G I ++ V D+ + S+G A++ F +A
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 77 AKAVEEMNGEFLPNHSKPIKV 97
+A E NG L + I+V
Sbjct: 65 KEAKERANGMEL--DGRRIRV 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 56.5 bits (136), Expect = 1e-11
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++FI L T++ LR+ F FG ++E ++D T S+G ++ F V
Sbjct: 2 KMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF-MDQAGVDKVL 59
Query: 82 EMNGEFLPNHSKPIKVLIA 100
+ L SK I +A
Sbjct: 60 AQSRHEL--DSKTIDPKVA 76
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 56.2 bits (135), Expect = 3e-11
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 23 SRLFILC-GKDVTEDDLRQGFSPFGNIQE--IRCVKDRNTGESKGVAYIRFSKTSEAAKA 79
RLFI K +++ + + I + +++G A++ + AA A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 80 VEEMNGEFLPNHSKPIKVLIA 100
++ + I V A
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWA 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.8 bits (134), Expect = 3e-11
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 24 RLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+LFI + +D +++ + FG ++ VKD TG SKG A+ + + +A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 83 MNGEFLPNHSKPIKVLIA 100
+NG L K + V A
Sbjct: 63 LNGMQL--GDKKLLVQRA 78
Score = 23.8 bits (51), Expect = 9.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRN 245
L+G ++ +L V A G +N
Sbjct: 61 AGLNGMQLGDKKLLVQRASV--GAKN 84
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 56.0 bits (135), Expect = 4e-11
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 13 SREYNDEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRF 70
S + + +SR+FI L V + D+ FS +G I KG A++++
Sbjct: 6 SGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQY 57
Query: 71 SKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAK 102
A AV +G + + + + +AA+
Sbjct: 58 VNERNARAAVAGEDGRMI--AGQVLDINLAAE 87
Score = 27.5 bits (61), Expect = 0.53
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRN 245
G + G L + A PK +R+
Sbjct: 68 AGEDGRMIAGQVLDINLAAEPKVNRS 93
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.8 bits (134), Expect = 5e-11
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 18 DEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
+ + +++ L + V+E L + F G + KDR TG+ +G ++ F +
Sbjct: 5 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA 100
A A++ M+ L + KPI+V A
Sbjct: 64 ADYAIKIMDMIKL--YGKPIRVNKA 86
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.4 bits (133), Expect = 7e-11
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ E+ + +G ++E+ + G Y++F + +A KAV ++N +
Sbjct: 37 DEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF-- 93
Query: 91 HSKPIKV 97
+ +PI
Sbjct: 94 NGQPIHA 100
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 55.1 bits (132), Expect = 8e-11
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++V + L F PFG+I +I+ D T + +G A++ F +AA A++ MN L
Sbjct: 15 EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-- 72
Query: 91 HSKPIKVLIAAKLEFKE 107
+ I+V +A + KE
Sbjct: 73 FGRTIRVNLAKPMRIKE 89
Score = 26.2 bits (57), Expect = 1.5
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 220 QTLHGAEMYGSRLKVMEADPPK 241
++ +E++G ++V A P +
Sbjct: 65 DNMNESELFGRTIRVNLAKPMR 86
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 54.3 bits (130), Expect = 1e-10
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
+P + + + V+ D++ F + I C+K G G A + F EA
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 78 KAVEEMNGEFLPNHSKPIKVLIA 100
AV ++N + S+ +K+++
Sbjct: 66 AAVIDLNDRPI--GSRKVKLVLG 86
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 54.6 bits (131), Expect = 1e-10
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 23 SRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
L++ L TE+ + + FS G+I++I D+ + G ++ + ++A A+
Sbjct: 8 CTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 81 EEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQK 114
+NG L + I+ ++ G++ G++
Sbjct: 67 RYINGTRL--DDRIIRT------DWDAGFKEGRQ 92
Score = 25.7 bits (56), Expect = 2.1
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 210 FIYYILVEFS---------QTLHGAEMYGSRLKVMEADPPKGDR 244
+ VE+ + ++G + ++ K R
Sbjct: 48 ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGR 91
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.4 bits (128), Expect = 2e-10
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++F+ L D E+ +R+ F FG ++ I D T + +G +I F + K +E
Sbjct: 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
Query: 82 EMNGEFLPNHSKPIKVLIA 100
+ ++ +A
Sbjct: 60 KKYHNV---GLSKCEIKVA 75
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 55.8 bits (133), Expect = 2e-10
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNT 59
+ R + + S+ ++F+ +D E LR F +G I+ I + DR +
Sbjct: 76 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 135
Query: 60 GESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
G+ +G A++ F K V + + +V A
Sbjct: 136 GKKRGFAFVTFDDHDSVDKIVIQKYHTV---NGHNCEVRKA 173
Score = 53.9 bits (128), Expect = 1e-09
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 19 EPPHSR-LFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTS 74
EP R LFI G + T++ LR F +G + + ++D NT S+G ++ ++
Sbjct: 2 EPEQLRKLFI--GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 59
Query: 75 EAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISV 117
E A+ + +P + + + + +KI V
Sbjct: 60 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFV 102
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 53.9 bits (129), Expect = 3e-10
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 1 MDRNYRINTHDRSREYNDEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRN 58
M++ + T R+ ++ +LFI L + TE+ LR + +G + + ++D
Sbjct: 1 MEK--TLETVPLERKKREKEQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPA 57
Query: 59 TGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
+ S+G ++ FS +E A+ + ++ A
Sbjct: 58 SKRSRGFGFVTFSSMAEVDAAMAARPHSI---DGRVVEPKRA 96
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.5 bits (128), Expect = 3e-10
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRN---TGESKGVAYIRFSKTSEAAKAVEEMNGEF 87
TE+ L+ FS G I+ K +N S G ++ + K +A KA++++ G
Sbjct: 8 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 67
Query: 88 LPNHSKPIKVLIA 100
+ ++V I+
Sbjct: 68 V--DGHKLEVRIS 78
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 52.8 bits (126), Expect = 4e-10
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+++T+++ R F G I+ + V+D+ TG+S G ++ + +A KA+ +NG L
Sbjct: 12 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-- 69
Query: 91 HSKPIKVLIA 100
+K IKV A
Sbjct: 70 QTKTIKVSYA 79
Score = 25.4 bits (55), Expect = 2.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 220 QTLHGAEMYGSRLKVMEADP 239
TL+G + +KV A P
Sbjct: 62 NTLNGLRLQTKTIKVSYARP 81
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.1 bits (127), Expect = 4e-10
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 19 EPPHSR-LFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
EP R LFI L + T++ LR F +G + + ++D NT S+G ++ ++ E
Sbjct: 2 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA 100
A+ + + ++ A
Sbjct: 61 VDAAMNARPHKV---DGRVVEPKRA 82
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 53.9 bits (129), Expect = 4e-10
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 20 PPHSRLFILCG--KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
P +R+ + +T +++ F +G I++IR NT E++G AY+ + +A
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV---GNTPETRGTAYVVYEDIFDAK 60
Query: 78 KAVEEMNGEFLPNHSKPIKVLIA 100
A + ++G + ++ + VL
Sbjct: 61 NACDHLSGFNV--CNRYLVVLYY 81
Score = 28.1 bits (62), Expect = 0.45
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRNRKRQR 250
L G + L V+ + + + ++
Sbjct: 64 DHLSGFNVCNRYLVVLYYNANRAFQKMDTKK 94
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.5 bits (128), Expect = 4e-10
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ DL FS G ++++R + DRN+ SKG+AY+ F ++ + G+ L
Sbjct: 28 ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF-CEIQSVPLAIGLTGQRL-- 84
Query: 91 HSKPIKVLIA 100
PI V +
Sbjct: 85 LGVPIIVQAS 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 52.6 bits (126), Expect = 5e-10
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
+L + L V++ D+++ F+ FG +++ V +G S G A + F + ++A KA++
Sbjct: 2 KLLVSNL-DFGVSDADIQELFAEFGTLKKA-AVHYDRSGRSLGTADVHFERKADALKAMK 59
Query: 82 EMNGEFLPNHSKPIKVLIA 100
+ NG L +P+ + +
Sbjct: 60 QYNGVPL--DGRPMNIQLV 76
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.2 bits (127), Expect = 5e-10
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 17 NDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQE--------IRCVKDRNTGESKGVAY 67
+++ +S +++ VT DDL F G ++ I D+ TG+ KG A
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 68 IRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
+ + A AVE +G+ +KV +A
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDF--QGSKLKVSLA 93
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.8 bits (126), Expect = 6e-10
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 18 DEPPHSRLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+ P + LFI ++ + DL Q F PFGN+ + D+ T SK ++ + A
Sbjct: 14 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIA 100
A++ MNG + K +KV +
Sbjct: 74 QAAIQSMNGFQI--GMKRLKVQLK 95
Score = 24.7 bits (53), Expect = 6.9
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDR 244
Q+++G ++ RLKV K D
Sbjct: 78 QSMNGFQIGMKRLKVQLKR-SKNDS 101
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 52.1 bits (124), Expect = 8e-10
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 31 KDVTEDDLRQGFSPFGNI-QEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
++ E L FS FG I Q + ++D +TG SKG A+I F+ + A+E MNG++L
Sbjct: 8 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL- 66
Query: 90 NHSKPIKVLIAAK 102
++PI V A K
Sbjct: 67 -CNRPITVSYAFK 78
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 52.3 bits (125), Expect = 8e-10
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 20 PPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
P + ++ + +T+ +RQ FSPFG I EIR ++ +++RFS AA
Sbjct: 16 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAA 68
Query: 78 KAVEEMNGEFLPNHSKPIKV 97
A+ +NG + +K
Sbjct: 69 HAIVSVNGTTI--EGHVVKC 86
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.8 bits (121), Expect = 2e-09
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++FI L D T+ DL+ FS FG + + D TG S+G ++ F ++ K ++
Sbjct: 1 KMFIGGL-SWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
Query: 82 EMNGEFLPNHSKPIKV 97
+ + + K I
Sbjct: 60 QKEHKL---NGKVIDP 72
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.1 bits (122), Expect = 2e-09
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
S L +L TE DL++ FS FG + ++ KD TG SKG ++RF++ K +
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 82 EMNGEFLPNHSKPIKVLIA 100
+ + + +
Sbjct: 69 QRHMI----DGRWCDCKLP 83
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 51.3 bits (122), Expect = 2e-09
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 20 PPHSRLFILCG---KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
L + G V+ + L G + + ++ ++ R+ T E+
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY------SFARYRTTEES 69
Query: 77 AKAVEEMNG-EFLPNHSKPIKVLIA 100
+A +NG E + + + I + +
Sbjct: 70 KRAYVTLNGKEVVDDLGQKITLYLN 94
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 2e-09
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+D E DL++ F PFG+I I KD+ TG+SKG A+I F + +AA+A+ ++G
Sbjct: 18 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-- 75
Query: 91 HSKPIKVLIA 100
+ V A
Sbjct: 76 DHLILNVEWA 85
Score = 24.2 bits (52), Expect = 6.5
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 220 QTLHGAEMYGSRLKVMEADP 239
+ G L V A P
Sbjct: 68 AGVSGFGYDHLILNVEWAKP 87
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.6 bits (120), Expect = 4e-09
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 12 RSREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRF 70
YN P+ L++ VTE DL F+ F + TG +G A+I F
Sbjct: 8 MFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITF 67
Query: 71 SKTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
A +A+ +NG L + K + +
Sbjct: 68 PNKEIAWQALHLVNGYKL--YGKILVIEFG 95
Score = 24.4 bits (52), Expect = 9.0
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 220 QTLHGAEMYGSRLKVMEADPPK 241
++G ++YG L + K
Sbjct: 78 HLVNGYKLYGKILVIEFGKNKK 99
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 50.8 bits (121), Expect = 4e-09
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
+ P R+ + VT D L Q FS FG + +I ++ A ++++ A
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQ 59
Query: 78 KAVEEMNGEFLPNHSKPIKV 97
A ++G+ + N +++
Sbjct: 60 HAKLSLDGQNIYNACCTLRI 79
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 1e-08
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 18 DEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
D+ L++ L +DVTE + Q FS G + + + + + + ++ F + +
Sbjct: 4 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC--FVEFYEHRD 60
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA 100
AA A+ MNG + K +KV A
Sbjct: 61 AAAALAAMNGRKI--LGKEVKVNWA 83
Score = 26.9 bits (59), Expect = 0.81
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDR 244
++G ++ G +KV A P +
Sbjct: 66 AAMNGRKILGKEVKVNWATTPSSQK 90
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 49.3 bits (117), Expect = 1e-08
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18 DEPPHSRLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
+ RL + + DLRQ F FG I ++ + + SKG ++ F +++A
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADA 64
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIA 100
+A E+++G + + I+V A
Sbjct: 65 DRAREKLHGTVV--EGRKIEVNNA 86
Score = 23.9 bits (51), Expect = 9.9
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRN 245
+ LHG + G +++V A + N
Sbjct: 69 EKLHGTVVEGRKIEVNNAT-ARVMTN 93
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.8 bits (116), Expect = 1e-08
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 22 HSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAV 80
SRLF+ D+TE+++R+ F +G E+ KD+ +IR + A A
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAK 61
Query: 81 EEMNGEFLPNHSKPIKVLIA 100
E++ L K ++V A
Sbjct: 62 VELDNMPL--RGKQLRVRFA 79
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 48.9 bits (116), Expect = 2e-08
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAK 78
RLF+ +E+DL + FS +G + E+ D T + KG A++ F A K
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 79 AVEEMNGEFLPNHSKPIKVLIA 100
A E++G+ + + VL +
Sbjct: 66 AYAEVDGQVF--QGRMLHVLPS 85
Score = 25.4 bits (55), Expect = 3.0
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRNR 246
+ G G L V+ + K
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKKEASQS 94
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 49.0 bits (116), Expect = 2e-08
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 19 EPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
+ +++F+ T+ LR+ F FG+I+E + DR TG+S+G ++ + + A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 78 KAVEEMNGEFLPNHSKPIKVLIAAK 102
+A ++ N + V +A
Sbjct: 67 RACKDPNPII---DGRKANVNLAYL 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.1 bits (114), Expect = 2e-08
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 23 SRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEE 82
+ L++ G+D+T LR FSPFGNI ++ R A++ + K A +AV E
Sbjct: 6 NTLYV-YGEDMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAE 58
Query: 83 MNGEFLPNHSKPIKVLIA 100
+NG + S +KV IA
Sbjct: 59 LNGTQV--ESVQLKVNIA 74
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 48.5 bits (115), Expect = 3e-08
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++TED+L++ F + G+SKG+AYI F ++A K +EE G +
Sbjct: 26 FNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI-- 78
Query: 91 HSKPIKVLIAAKLEFKEGYRG 111
+ + + + K G RG
Sbjct: 79 DGRSVSLYYTGE---KGGTRG 96
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDR 244
+ GAE+ G + + G R
Sbjct: 71 EEKQGAEIDGRSVSLYYTGEKGGTR 95
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 47.8 bits (113), Expect = 3e-08
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
++ ED++++ F +G I+ I DR TG SKG A + + +A A E +NG +
Sbjct: 17 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-- 74
Query: 91 HSKPIKV 97
+ I+V
Sbjct: 75 MGQTIQV 81
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.1 bits (114), Expect = 4e-08
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGE--SKGVAYIRFSKTSEAAKAVEEMNGEFLP 89
+ +D+R S +G ++ I + + E G ++ F+ + KA++ + G
Sbjct: 25 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF- 83
Query: 90 NHSKPIKVLIAAKLEFKEG 108
++ + +
Sbjct: 84 -ANRVVVTKYCDPDSYHRR 101
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.0 bits (111), Expect = 6e-08
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
+LF+ L D E L Q FS +G I E+ VKDR T S+G ++ F +A A+
Sbjct: 7 KLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 82 EMNGEFLPNHSKPIKVLIAAK 102
MNG+ + + I+V A K
Sbjct: 66 AMNGKSV--DGRQIRVDQAGK 84
Score = 27.0 bits (59), Expect = 0.87
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRN 245
++G + G +++V +A +R+
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRS 90
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 46.6 bits (110), Expect = 6e-08
Identities = 14/76 (18%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++F+ L + T +D++ F FG + + + D+ T +G ++ F ++ + + V
Sbjct: 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVC 58
Query: 82 EMNGEFLPNHSKPIKV 97
E++ + ++K ++
Sbjct: 59 EIHFHEI--NNKMVEC 72
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 47.0 bits (111), Expect = 7e-08
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 20 PPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAK 78
R+++ D+ D+ F +G I++I R A++ F +A
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPRDAED 68
Query: 79 AVEEMNGEFLPNHSKPIKVLIA 100
AV +G ++V
Sbjct: 69 AVYGRDGYDY--DGYRLRVEFP 88
Score = 25.0 bits (54), Expect = 4.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKG 242
G + G RL+V +G
Sbjct: 71 YGRDGYDYDGYRLRVEFPRSGRG 93
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 46.2 bits (109), Expect = 1e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
K + L FS FGNI + V D N SKG ++ F A +A+E+MNG L
Sbjct: 18 KSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLL-- 73
Query: 91 HSKPIKVLIA 100
+ + + V
Sbjct: 74 NDRKVFVGRF 83
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 46.4 bits (109), Expect = 1e-07
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+T+ D+ Q + V N G+ G A ++F +A K+ ++ + L +
Sbjct: 19 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RLHRKKL--N 75
Query: 92 SKPIKVLIAAKLEFKEGYRGG 112
+ V + + +E +
Sbjct: 76 GREAFVHVVTLEDMREIEKNP 96
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 45.8 bits (108), Expect = 2e-07
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 21 PHSRLFI--LCGKDVTEDDLRQ-GFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAA 77
P+ ++I L + + +D+L++ + F +I + + + +G A++ F + S A
Sbjct: 2 PNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 78 KAVEEMNGEFLPNHSKPIKVLIA 100
A+ M G + KP+++ A
Sbjct: 61 NALRSMQGFPF--YDKPMRIQYA 81
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.8 bits (108), Expect = 2e-07
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 16 YNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTS 74
Y P +RL++ G + + L + F FG+I+ I VK + AYI++
Sbjct: 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF------AYIQYESLD 64
Query: 75 EAAKAVEEMNGEFLPNHSKPIKVLIA 100
A A +M G L + ++V A
Sbjct: 65 AAQAACAKMRGFPLGGPDRRLRVDFA 90
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 45.6 bits (107), Expect = 2e-07
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
T+ ++R + + S+ AYI + +A VE++NG +
Sbjct: 11 PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI-- 68
Query: 91 HSKPIKVLIA 100
+ ++
Sbjct: 69 EGYTLVTKVS 78
Score = 25.9 bits (56), Expect = 1.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 220 QTLHGAEMYGSRLKVMEADP 239
+ L+G ++ G L ++P
Sbjct: 61 EKLNGLKIEGYTLVTKVSNP 80
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.6 bits (107), Expect = 2e-07
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 31 KDVTEDDLRQGF---SPFGNIQEIRCVKDRNTGES---KGVAYIRFSKTSEAAKAVEEMN 84
+ + + ++ + FG I ++ + S AY+ + ++ +A +A++ +N
Sbjct: 18 QRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 77
Query: 85 GEFLPNHSKPIKV 97
+ + +K
Sbjct: 78 NVVV--DGRTLKA 88
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 45.3 bits (107), Expect = 3e-07
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 35 EDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNHSKP 94
+DLR S FG I+++ GVA + F EA ++ ++G + +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTLDGRWF--GGRQ 86
Query: 95 IKVLIA 100
I
Sbjct: 87 ITAQAW 92
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 44.4 bits (104), Expect = 6e-07
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 17 NDEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTS 74
+D +FI L D E+ L + FG+++ +R V +T SKG A+ +F
Sbjct: 3 SDVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 75 EAAKAVEEMNGEFLPN----HSKPIKVLIA 100
A K + + E + +KV +A
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLA 91
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 43.5 bits (102), Expect = 8e-07
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 23 SRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++L+I VT DDLRQ F G A++ + + A +A+E
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPDQNWAIRAIE 55
Query: 82 EMNGEFLPNHSKPIKVLIA 100
++G+ H K ++V +
Sbjct: 56 TLSGKV-ELHGKIMEVDYS 73
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.3 bits (104), Expect = 9e-07
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 18 DEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
PP+ F+ L DVTE+ +++ F + N KG Y F +
Sbjct: 12 KSPPY-TAFLGNL-PYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LD 68
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA-AKLEFKEGYRGG 112
+ + +N E L +K I+V +A + G G
Sbjct: 69 SLLSALSLNEESL--GNKRIRVDVADQAQDKDSGPSSG 104
Score = 24.7 bits (53), Expect = 5.5
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 222 LHGAEMYGSRLKVMEADPPKGDRNRKR 248
L+ + R++V AD + +
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPS 102
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 43.2 bits (101), Expect = 1e-06
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 24 RLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVE 81
++F+ + +D E LR F +G I+ I + DR +G+ +G A++ F ++ +
Sbjct: 4 KIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIV 61
Query: 82 EMNGEFLPNHSKPIKVLIA 100
+ + +V A
Sbjct: 62 IQKYHTV--NGHNCEVRKA 78
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.6 bits (102), Expect = 1e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+ TE+ L+ FS G + R V DR TG+ KG + + A A+ +NG
Sbjct: 18 YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-- 75
Query: 91 HSKPIKVLIAAKLEFKE 107
+ ++V AA + KE
Sbjct: 76 SGRALRVDNAASEKNKE 92
Score = 27.8 bits (61), Expect = 0.58
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 220 QTLHGAEMYGSRLKVMEADPPKGDRNRKRQ 249
+ L+G E G L+V A K K
Sbjct: 68 RNLNGREFSGRALRVDNAASEKNKEELKSL 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 43.7 bits (102), Expect = 2e-06
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 10 HDRSREYNDEPPHSR-LFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAY 67
H + N EP R L + V E LRQ F +G I+ ++ V DR T +S+G +
Sbjct: 29 HIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGF 88
Query: 68 IRFSKTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGG 112
++F S A +A+ +NG + +K +KV +AA + G G
Sbjct: 89 VKFQSGSSAQQAIAGLNGFNI--LNKRLKVALAASGHQRPGIAGA 131
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.4 bits (99), Expect = 2e-06
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 24 RLFIL-CGKDVTEDDLRQGFSPFGNIQEIR-----CVKDRNTGESKGVAYIRFSKTSEAA 77
RL++ +TE+ + F+ + + V + K A++ F E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 78 KAVEEMNGEFLPNHSKPIKV 97
+A+ +G + +K+
Sbjct: 63 QAM-AFDGIIF--QGQSLKI 79
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 42.1 bits (98), Expect = 3e-06
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
T+ DL + P+G I + + D+ T + KG ++ F S A KAV +
Sbjct: 8 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 62
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.5 bits (99), Expect = 3e-06
Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPNH 91
+++++ Q FS + + G S G A+++F + E A+ + + E +
Sbjct: 26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF-ASQEIAEKALKKHKERI--G 82
Query: 92 SKPIKVLIAAKLEFKEG 108
+ I++ +++ E +
Sbjct: 83 HRYIEIFKSSRAEVRTS 99
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 41.2 bits (96), Expect = 7e-06
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+E+ + + F+ + + + A++ FS +A +A++ +NG+ L
Sbjct: 18 LSTSEEMIEKEFNNI------KPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL-- 69
Query: 91 HSKPIKVLIA 100
PI+V +A
Sbjct: 70 DGSPIEVTLA 79
Score = 24.6 bits (53), Expect = 4.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 220 QTLHGAEMYGSRLKVMEADPPK 241
+ L+G + GS ++V A P
Sbjct: 62 KALNGKVLDGSPIEVTLAKPVD 83
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 40.5 bits (94), Expect = 1e-05
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
+++ +P + L+I + E +L PFG + R ++D + S+GV + R
Sbjct: 11 AKQQEQDP--TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG-TSRGVGFARME 67
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFK 106
T + + NG+F+ + P L K
Sbjct: 68 STEKCEAVIGHFNGKFI--KTPPGVSAPTEPLLCK 100
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 38.9 bits (90), Expect = 6e-05
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
L Q PFG I + N A+I + T +A AV+
Sbjct: 19 GKNLRYQLLQLVEPFGVISNHLILNKINE------AFIEMATTEDAQAAVDYYTTTPALV 72
Query: 91 HSKPIKVLIAAK 102
KP++V ++ K
Sbjct: 73 FGKPVRVHLSQK 84
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 38.2 bits (88), Expect = 1e-04
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 13 SREYNDEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFS 71
S ++ + + + V E DL + FG I + + + A + F
Sbjct: 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ------ALVEFE 59
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIA 100
A + V + + +
Sbjct: 60 NIDSAKECVTFAADVPVYIAGQQAFFNYS 88
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 38.2 bits (88), Expect = 1e-04
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 14/98 (14%)
Query: 19 EPPHSRLFI------LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
S L + + T F + + K I FS
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSN 55
Query: 73 TSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYR 110
AA A ++ K +K+ A L +
Sbjct: 56 PLSAADARLRLH--KTEFLGKEMKLYFAQTLHIGSSHL 91
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 37.4 bits (86), Expect = 1e-04
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 18 DEPPHSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSE 75
++ + ++I D T DD+++ G + I+ + KG ++ F
Sbjct: 2 NDVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIES 59
Query: 76 AAKAVEEMNGEFLPNHSKPIKVLIA 100
A K VE ++ + +L
Sbjct: 60 AKKFVETPGQKY---KETDLLILFK 81
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.3 bits (86), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 20 PPHSRLFILC-GKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAK 78
S +F+ D+TED+LR+ FS +G++ ++ K A++ F+ A
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIAQS 57
Query: 79 AVEEMNGEFLPNHSKPIKVLIA 100
E + + A
Sbjct: 58 LCGEDL-II---KGISVHISNA 75
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 37.5 bits (86), Expect = 2e-04
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 31 KDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFLPN 90
+DL FS G I+ I V+ G K EA ++ N L
Sbjct: 21 DQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKEKAKEALGKAKDANNGNLQL 75
Query: 91 HSKPIKVLIAAKLEFKEGYR 110
+K + + KE +
Sbjct: 76 RNKEVTWEVLEGEVEKEALK 95
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 35.5 bits (81), Expect = 8e-04
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 22 HSRLFI--LCGKDVTEDDLRQGFSPFGNIQEIRCVKD-RNTGESKGVAYIRFSKTSEAAK 78
+ I L + + E+ LR+ F FG+I++I + + A++ F + ++A+
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF-ENKDSAE 62
Query: 79 AVEEMNGEFLPNHSKPIKVLIA 100
+MN L ++ I V +A
Sbjct: 63 RALQMNRSLL--GNREISVSLA 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.5 bits (73), Expect = 0.008
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 18 DEPPHSRLFIL-CGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEA 76
D P L I +VTE ++ PFG + I +K +N ++ + A
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQA------FLELATEEAA 57
Query: 77 AKAVEEMNGEFLPNHSKPIKVLIAAKLEFK 106
V + ++PI + + E K
Sbjct: 58 ITMVNYYSAVTPHLRNQPIYIQYSNHKELK 87
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 29.1 bits (65), Expect = 0.10
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 32 DVTEDDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNGEFL 88
L Q F+ +GNI + N +IR+ +A KA+ +G
Sbjct: 15 ASASYILLQ-FAQYGNILKHVMSNTGNWM------HIRYQSKLQARKAL-SKDGRIF 63
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 26.1 bits (57), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 5 YRINTHDRSREYNDEPPHSRLFILCGKDVTEDDLRQGF 42
R+ + D R + DE PHS + + G + E+++R F
Sbjct: 54 QRLYSADWDRPWGDEKPHSTM-VFIGIQLPEEEIRAAF 90
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 26.9 bits (58), Expect = 2.1
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 7 INTHDRSREYNDEPPHSRLFILCGKDVTEDDLRQGFSPFGNIQEIRCVKDRNTG-ESKGV 65
+ + PP V ++ + F NI+ + V +S G+
Sbjct: 166 LCVLSYDPTKHPGPPFY---------VPHAEIERLFGKICNIRCLEKVDAFEERHKSWGI 216
Query: 66 AYIR 69
+
Sbjct: 217 DCLF 220
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 26.9 bits (58), Expect = 2.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 160 ALGGNAALSVVDSKGALQSLTKALAQATSLLRSAGL 195
ALGGNA LS S A Q + L G
Sbjct: 7 ALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGH 42
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 27.0 bits (58), Expect = 2.5
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 72 KTSEAAKAVEEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISVQYTSPQSAAYARDK 131
+ E A + FL + + + + + + PQ
Sbjct: 305 QLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPS 364
Query: 132 FHGFAYPP-----------GIPMVVVPDFS 150
GF G+PM+ P F+
Sbjct: 365 IGGFLTHCGWNSTTESICAGVPMLCWPFFA 394
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.1 bits (56), Expect = 4.8
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 39 RQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSK 72
R N+ +R +K R TG++ Y+ ++K
Sbjct: 234 RNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNK 267
>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus
bisporus) [TaxId: 5341]}
Length = 260
Score = 25.4 bits (55), Expect = 6.1
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 117 VQYTSPQSAAYARDKFHGFAYPPGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGAL 176
V + A K G +V S + ++ + + SK A
Sbjct: 117 VNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNS--SKAAC 174
Query: 177 QSLTKALAQ 185
+L K LA
Sbjct: 175 SNLVKGLAA 183
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 25.6 bits (55), Expect = 7.1
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 81 EEMNGEFLPNHSKPIKVLIAAKLEFKEGYRGGQKISV--QYTSPQSAAYARDKFHGFAYP 138
+ N V K R S+ + + KF
Sbjct: 103 IQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETIT 162
Query: 139 PGIPMVVVPDFSYGLPRNGASALGGNAALSVVDSKGALQSLTKALAQ 185
+ ++ F + G G + + +K + L++ A+
Sbjct: 163 EEELVGLMNKF-VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHAR 208
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 95
Score = 24.0 bits (52), Expect = 7.9
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 36 DDLRQGFSPFGNIQEIRCVKDRNTGESKGVAYIRFSKTSEAAKAVEEMNG 85
+L Q +G I +R + + + F+ + A + +++G
Sbjct: 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVL-DVDG 79
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal
domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 161
Score = 24.7 bits (54), Expect = 8.3
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 135 FAYPPGIPMVV 145
YPPG+ V
Sbjct: 89 LPYPPGVFCVA 99
>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 251
Score = 25.0 bits (54), Expect = 8.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 172 SKGALQSLTKALAQ 185
SK + TK+LA+
Sbjct: 162 SKAGVIGFTKSLAK 175
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 25.0 bits (54), Expect = 9.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 156 NGASALGGNAALSVVDSKGALQSLTKALAQ 185
G +A+ S SK A+ S T +LA+
Sbjct: 140 TGFNAIHQVPVYSA--SKAAVVSFTNSLAK 167
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
{Salmonella typhimurium [TaxId: 90371]}
Length = 134
Score = 24.4 bits (53), Expect = 9.5
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 28 LCGKDVTEDDLRQ---GFSPFGNIQEIRCVKDRNTGESKGV 65
+ D LR+ G + + ++ G++
Sbjct: 77 ISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANF 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,601
Number of extensions: 39941
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 107
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)