BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8820
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDS 60
Q D + Y+V +G++R +T G+ + A G+L G + ++ R+ + +AV D+
Sbjct: 36 QGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDT 95
Query: 61 ELAKL 65
EL L
Sbjct: 96 ELLAL 100
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 188 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGQGQDEMFRV- 242
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 243 --LDFSVPMLPDDKPHYLM 259
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGQGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q
Mutant
Length = 388
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 191 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 245
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 246 --LDFSVPMLPDDKPHYLM 262
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 188 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 242
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 243 --LDFSVPMLPDDKPHYLM 259
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 191 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 245
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 246 --LDFSVPMLPDDKPHYLM 262
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 189 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 243
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 244 --LDFSVPMLPDDKPHYLM 260
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 117 REEVVEDNKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ 174
R+E E+ L + GS+F + Q+S+D ++ F G +GGLAV G+ +F +
Sbjct: 188 RKEQAENAALFGIQQGSVFENLRQQSADALAEI----GFDGYAVGGLAVGEGQDEMFRV- 242
Query: 175 SRLPATIAWLPQDDCSTLI 193
L ++ LP D L+
Sbjct: 243 --LDFSVPMLPDDKPHYLM 259
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 62 LAKLPEGLCDHLPRSPSEQELIHS 85
+ KL E LCD LP + QE IHS
Sbjct: 82 VGKLQEILCDMLPSADKWQEPIHS 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,678,886
Number of Sequences: 62578
Number of extensions: 263052
Number of successful extensions: 603
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 25
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)