Query psy8820
Match_columns 234
No_of_seqs 242 out of 2398
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1113|consensus 99.9 2E-27 4.3E-32 190.8 11.2 187 1-200 159-353 (368)
2 KOG0614|consensus 99.9 1E-27 2.3E-32 201.0 2.5 193 1-200 191-391 (732)
3 KOG2968|consensus 99.9 4.8E-23 1E-27 181.6 16.5 232 2-234 130-520 (1158)
4 KOG2968|consensus 99.8 2.9E-20 6.2E-25 164.2 7.0 212 1-217 400-619 (1158)
5 PRK10402 DNA-binding transcrip 99.7 5.2E-17 1.1E-21 129.1 13.1 106 106-213 33-138 (226)
6 PRK11753 DNA-binding transcrip 99.7 1.4E-16 3.1E-21 125.1 14.8 106 107-214 23-129 (211)
7 PF00027 cNMP_binding: Cyclic 99.7 2.8E-17 6.1E-22 111.5 8.0 90 107-198 2-91 (91)
8 TIGR03697 NtcA_cyano global ni 99.7 4.7E-16 1E-20 120.5 12.9 101 112-214 1-103 (193)
9 PRK09392 ftrB transcriptional 99.7 4.1E-16 8.8E-21 124.7 11.9 105 107-214 33-137 (236)
10 COG0664 Crp cAMP-binding prote 99.7 6E-16 1.3E-20 121.2 11.9 107 107-215 26-132 (214)
11 PRK09391 fixK transcriptional 99.7 2.6E-15 5.7E-20 119.6 13.5 104 106-214 40-143 (230)
12 PRK11161 fumarate/nitrate redu 99.6 4.8E-15 1E-19 118.4 12.8 104 108-214 41-144 (235)
13 PRK13918 CRP/FNR family transc 99.6 1.1E-14 2.4E-19 113.6 11.5 99 107-214 9-109 (202)
14 PF00027 cNMP_binding: Cyclic 99.6 2.4E-15 5.1E-20 101.9 5.4 78 1-78 13-90 (91)
15 cd00038 CAP_ED effector domain 99.6 1.3E-14 2.8E-19 102.0 9.3 95 107-203 20-114 (115)
16 TIGR03697 NtcA_cyano global ni 99.5 4.2E-14 9.1E-19 109.5 9.6 79 1-79 7-87 (193)
17 PRK10402 DNA-binding transcrip 99.5 4.8E-14 1E-18 112.0 9.5 78 1-78 45-122 (226)
18 COG0664 Crp cAMP-binding prote 99.5 5.1E-14 1.1E-18 110.2 8.8 78 1-78 37-114 (214)
19 smart00100 cNMP Cyclic nucleot 99.5 2.5E-13 5.5E-18 95.9 10.8 97 107-205 20-118 (120)
20 PLN03192 Voltage-dependent pot 99.5 2.3E-13 4.9E-18 126.7 13.2 105 107-214 400-504 (823)
21 PRK11753 DNA-binding transcrip 99.5 1.6E-13 3.5E-18 107.7 10.1 79 1-79 34-113 (211)
22 PRK09392 ftrB transcriptional 99.4 8E-13 1.7E-17 105.7 8.1 78 1-79 44-121 (236)
23 COG2905 Predicted signal-trans 99.4 1E-12 2.2E-17 112.5 9.0 103 107-215 33-135 (610)
24 KOG1113|consensus 99.4 1.1E-12 2.3E-17 106.4 7.9 118 107-231 148-272 (368)
25 cd00038 CAP_ED effector domain 99.4 1.2E-12 2.6E-17 91.8 6.3 78 1-78 31-108 (115)
26 PRK09391 fixK transcriptional 99.4 4.8E-12 1E-16 100.8 10.2 76 1-79 52-127 (230)
27 KOG0498|consensus 99.4 8.1E-13 1.8E-17 118.3 6.2 104 107-213 445-550 (727)
28 PRK13918 CRP/FNR family transc 99.4 6.1E-12 1.3E-16 98.1 10.2 69 1-70 20-90 (202)
29 PRK11161 fumarate/nitrate redu 99.3 9.7E-12 2.1E-16 99.3 9.4 78 1-79 51-128 (235)
30 KOG0614|consensus 99.3 1.4E-12 2.9E-17 110.8 1.8 83 107-196 180-262 (732)
31 PLN03192 Voltage-dependent pot 99.2 1.6E-11 3.5E-16 114.4 8.1 78 1-79 411-488 (823)
32 smart00100 cNMP Cyclic nucleot 99.2 4E-11 8.7E-16 84.4 7.6 78 1-78 31-110 (120)
33 PLN02868 acyl-CoA thioesterase 99.2 1E-10 2.2E-15 100.9 11.2 89 107-200 34-122 (413)
34 KOG0500|consensus 99.1 2.5E-09 5.4E-14 90.4 13.2 94 107-205 333-432 (536)
35 PLN02868 acyl-CoA thioesterase 99.0 7.6E-10 1.7E-14 95.6 8.5 73 1-76 45-117 (413)
36 KOG0499|consensus 99.0 5.2E-09 1.1E-13 90.3 12.6 95 107-205 553-650 (815)
37 KOG0498|consensus 98.9 1.7E-09 3.6E-14 97.3 4.1 78 1-79 456-535 (727)
38 KOG0499|consensus 98.8 9.2E-09 2E-13 88.8 7.0 77 1-79 564-643 (815)
39 KOG0500|consensus 98.8 1.4E-08 3E-13 86.0 6.3 76 1-79 344-425 (536)
40 COG2905 Predicted signal-trans 98.6 9.1E-08 2E-12 82.7 6.5 74 2-79 45-118 (610)
41 KOG0501|consensus 98.2 1.5E-06 3.2E-11 75.5 4.4 95 107-208 574-670 (971)
42 PRK11832 putative DNA-binding 98.1 0.00013 2.7E-09 56.5 12.1 97 107-210 25-122 (207)
43 PF04831 Popeye: Popeye protei 97.9 0.00044 9.6E-09 50.4 11.6 103 106-214 30-137 (153)
44 PRK11832 putative DNA-binding 97.2 0.0021 4.5E-08 49.9 7.7 69 6-78 42-110 (207)
45 KOG0501|consensus 97.2 9.6E-05 2.1E-09 64.6 0.2 67 2-73 586-654 (971)
46 PF04831 Popeye: Popeye protei 96.5 0.018 3.9E-07 42.1 7.5 71 3-78 45-120 (153)
47 PRK11171 hypothetical protein; 94.1 2.6 5.7E-05 34.3 13.9 136 5-159 83-234 (266)
48 KOG3542|consensus 93.5 0.14 3E-06 46.3 5.0 82 108-196 309-391 (1283)
49 PF04648 MF_alpha: Yeast matin 93.5 0.038 8.2E-07 22.6 0.8 12 223-234 2-13 (13)
50 KOG3542|consensus 93.2 0.092 2E-06 47.4 3.5 69 2-75 320-389 (1283)
51 TIGR03214 ura-cupin putative a 91.9 2.4 5.2E-05 34.4 9.9 133 6-158 81-228 (260)
52 TIGR03404 bicupin_oxalic bicup 91.6 8 0.00017 33.1 16.6 34 5-39 87-120 (367)
53 PF05899 Cupin_3: Protein of u 90.4 0.58 1.3E-05 30.0 4.1 30 5-39 25-54 (74)
54 TIGR03037 anthran_nbaC 3-hydro 89.6 2.1 4.5E-05 31.9 6.9 57 4-68 47-104 (159)
55 KOG2378|consensus 87.8 0.21 4.5E-06 43.0 0.7 42 35-76 1-43 (573)
56 smart00835 Cupin_1 Cupin. This 87.1 4.6 0.0001 29.5 7.5 60 5-67 51-110 (146)
57 PRK13264 3-hydroxyanthranilate 86.3 4.1 8.9E-05 30.9 6.8 58 3-68 52-110 (177)
58 smart00835 Cupin_1 Cupin. This 84.5 13 0.00029 27.0 8.9 52 107-160 35-87 (146)
59 PF07883 Cupin_2: Cupin domain 83.5 8.1 0.00018 23.8 8.5 44 107-158 3-47 (71)
60 PF07883 Cupin_2: Cupin domain 82.7 8.2 0.00018 23.8 6.3 48 7-64 21-69 (71)
61 PRK09943 DNA-binding transcrip 77.0 10 0.00023 28.8 6.3 52 4-65 127-179 (185)
62 PF00190 Cupin_1: Cupin; Inte 76.1 8.7 0.00019 27.9 5.4 37 4-40 53-95 (144)
63 COG3837 Uncharacterized conser 74.2 6.5 0.00014 29.1 4.1 32 4-41 63-94 (161)
64 COG3718 IolB Uncharacterized e 73.4 8.1 0.00018 30.6 4.7 54 6-69 50-112 (270)
65 COG0662 {ManC} Mannose-6-phosp 71.5 8.4 0.00018 27.4 4.2 29 5-39 57-85 (127)
66 KOG2378|consensus 70.7 3.8 8.1E-05 35.7 2.6 44 154-197 1-45 (573)
67 PRK04190 glucose-6-phosphate i 70.7 31 0.00067 26.6 7.4 50 107-159 73-131 (191)
68 PF00190 Cupin_1: Cupin; Inte 67.2 24 0.00053 25.5 6.1 52 107-159 39-95 (144)
69 COG4101 Predicted mannose-6-ph 67.0 42 0.00092 23.7 7.1 66 102-171 46-111 (142)
70 PRK13290 ectC L-ectoine syntha 66.2 35 0.00076 24.3 6.5 51 6-65 56-106 (125)
71 PRK13290 ectC L-ectoine syntha 65.7 46 0.001 23.7 8.1 66 107-184 40-106 (125)
72 TIGR03404 bicupin_oxalic bicup 65.5 17 0.00037 31.2 5.6 63 5-72 266-330 (367)
73 COG1917 Uncharacterized conser 62.5 23 0.00051 25.1 5.1 48 106-161 47-95 (131)
74 PF13128 DUF3954: Protein of u 59.3 26 0.00056 20.6 3.8 17 5-21 9-25 (50)
75 PRK09943 DNA-binding transcrip 58.2 77 0.0017 24.0 7.6 68 107-184 112-179 (185)
76 COG0662 {ManC} Mannose-6-phosp 57.3 46 0.001 23.6 5.9 45 107-158 41-85 (127)
77 TIGR03037 anthran_nbaC 3-hydro 57.2 70 0.0015 23.9 6.8 57 123-187 48-104 (159)
78 COG3718 IolB Uncharacterized e 55.1 85 0.0019 25.1 7.2 66 106-184 33-108 (270)
79 PF11699 CENP-C_C: Mif2/CENP-C 55.0 28 0.00062 23.0 4.0 27 7-39 35-61 (85)
80 COG2140 Thermophilic glucose-6 53.6 41 0.00088 26.3 5.3 32 7-39 105-136 (209)
81 PLN00212 glutelin; Provisional 52.1 39 0.00084 30.3 5.6 35 5-39 369-403 (493)
82 COG1917 Uncharacterized conser 51.9 34 0.00075 24.2 4.5 30 5-40 64-93 (131)
83 PRK13264 3-hydroxyanthranilate 51.7 52 0.0011 25.1 5.4 59 121-187 52-110 (177)
84 PRK04190 glucose-6-phosphate i 51.5 51 0.0011 25.4 5.6 33 6-39 98-130 (191)
85 TIGR03214 ura-cupin putative a 51.2 1.3E+02 0.0027 24.5 8.1 51 102-159 58-109 (260)
86 COG3450 Predicted enzyme of th 49.2 46 0.001 23.4 4.5 29 6-39 64-92 (116)
87 COG5458 Uncharacterized conser 48.6 24 0.00053 24.8 3.0 40 4-48 54-93 (144)
88 PRK15457 ethanolamine utilizat 46.8 42 0.00092 26.7 4.5 28 6-39 176-203 (233)
89 PF06249 EutQ: Ethanolamine ut 46.3 35 0.00076 25.3 3.8 28 6-39 96-123 (152)
90 TIGR02272 gentisate_1_2 gentis 40.4 1.9E+02 0.0041 24.6 7.7 74 107-193 255-328 (335)
91 PRK15460 cpsB mannose-1-phosph 40.2 1E+02 0.0022 27.6 6.4 54 5-67 406-459 (478)
92 PRK11171 hypothetical protein; 40.1 2E+02 0.0044 23.3 8.2 69 106-185 65-135 (266)
93 PF12973 Cupin_7: ChrR Cupin-l 39.8 1.1E+02 0.0023 20.1 9.0 62 105-183 27-88 (91)
94 PF10963 DUF2765: Protein of u 38.0 39 0.00084 22.2 2.6 30 184-213 46-75 (83)
95 TIGR02451 anti_sig_ChrR anti-s 37.7 1E+02 0.0022 24.3 5.4 65 106-187 131-197 (215)
96 PF06052 3-HAO: 3-hydroxyanthr 37.0 1.7E+02 0.0037 21.6 6.9 58 3-68 51-109 (151)
97 COG2140 Thermophilic glucose-6 36.3 1.2E+02 0.0026 23.8 5.4 31 125-157 105-135 (209)
98 KOG4600|consensus 34.8 1.8E+02 0.0038 21.1 6.5 37 107-143 56-103 (144)
99 TIGR01479 GMP_PMI mannose-1-ph 33.0 1.6E+02 0.0035 26.2 6.5 52 6-66 398-449 (468)
100 PF12852 Cupin_6: Cupin 32.1 1.3E+02 0.0029 22.6 5.2 31 5-39 35-65 (186)
101 PF02311 AraC_binding: AraC-li 31.6 85 0.0018 21.5 3.9 57 7-73 25-84 (136)
102 KOG1758|consensus 29.7 2.3E+02 0.0051 20.9 8.3 29 169-197 101-129 (159)
103 KOG2757|consensus 29.1 62 0.0014 27.6 3.1 49 186-234 187-259 (411)
104 COG3257 GlxB Uncharacterized p 29.0 3E+02 0.0064 21.9 6.7 54 4-66 82-135 (264)
105 COG4766 EutQ Ethanolamine util 28.2 1.2E+02 0.0026 22.5 4.0 28 6-39 119-146 (176)
106 cd02848 Chitinase_N_term Chiti 27.9 2.1E+02 0.0045 19.8 4.9 15 2-16 45-59 (106)
107 COG3364 Zn-ribbon containing p 26.9 1.5E+02 0.0032 20.3 4.0 42 2-43 58-100 (112)
108 PLN00212 glutelin; Provisional 26.3 2.6E+02 0.0056 25.2 6.5 52 108-160 354-405 (493)
109 TIGR01479 GMP_PMI mannose-1-ph 26.1 4.3E+02 0.0093 23.5 8.0 68 107-184 381-448 (468)
110 PRK15460 cpsB mannose-1-phosph 25.8 4.3E+02 0.0092 23.7 7.9 68 107-184 390-457 (478)
111 PF00842 Ala_racemase_C: Alani 25.3 1.1E+02 0.0024 21.9 3.4 35 28-71 9-43 (129)
112 PF04962 KduI: KduI/IolB famil 25.0 2.2E+02 0.0049 23.1 5.6 73 107-185 32-106 (261)
113 PRK15131 mannose-6-phosphate i 24.4 1.2E+02 0.0026 26.3 4.1 14 221-234 235-248 (389)
114 PHA00672 hypothetical protein 24.3 1.3E+02 0.0028 21.5 3.5 32 106-139 51-82 (152)
115 COG1465 Predicted alternative 23.6 86 0.0019 26.0 2.9 29 11-39 259-287 (376)
116 COG4297 Uncharacterized protei 23.1 2.3E+02 0.0049 20.7 4.6 32 5-39 64-95 (163)
117 PF01050 MannoseP_isomer: Mann 23.1 3.1E+02 0.0068 20.2 6.1 45 107-158 68-112 (151)
118 PF06560 GPI: Glucose-6-phosph 21.0 3E+02 0.0064 21.1 5.2 36 4-39 82-120 (182)
119 COG3823 Glutamine cyclotransfe 20.7 4.4E+02 0.0096 21.0 7.9 85 107-194 38-126 (262)
120 PF14525 AraC_binding_2: AraC- 20.3 3.4E+02 0.0073 19.5 6.1 59 7-75 57-116 (172)
121 PF09313 DUF1971: Domain of un 20.1 2.7E+02 0.0058 18.2 4.9 49 125-178 27-75 (82)
No 1
>KOG1113|consensus
Probab=99.95 E-value=2e-27 Score=190.80 Aligned_cols=187 Identities=18% Similarity=0.208 Sum_probs=153.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||.||.||+|.+|++.|++.. ..+..++||.+|||+||+.+.||.||++|.+++.+|.+++..|..++..+..
T Consensus 159 qGdeGd~fYvI~kGt~dVyv~~-----~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~- 232 (368)
T KOG1113|consen 159 QGDEGDNFYVIDKGTFDVYVNG-----TYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCI- 232 (368)
T ss_pred cCCcCCcEEEEecceEEEEECC-----eEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccch-
Confidence 7999999999999999999873 6789999999999999999999999999999999999999999998776541
Q ss_pred HHHHHHHHHHHHHhCC------CCCcccccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 81 ELIHSSKREFMEQLGV------KDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 81 ~l~~~~~~~l~~~l~~------~~~~~l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
...+.. ..+.+..++ .++.-+.+.+ +.|++|+.|..+ |++++.+|+|.+|++.+.... +| ..+ .+
T Consensus 233 kkrkMy-~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~q-g~~ge~f~~i~eGEvdv~~~~-~~---v~v-kl 305 (368)
T KOG1113|consen 233 KKRKMY-EPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQ-GDQGEHFYIIEEGEVDVLKKR-DG---VEV-KL 305 (368)
T ss_pred hhhhhh-hhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEec-cCCcceEEEecccccchhhcc-CC---eEE-Ee
Confidence 111111 111111111 0111222333 899999999999 999999999999999998765 22 444 89
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHH
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVT 200 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~ 200 (234)
+.||+||+.+++.+.|+.++|.|..+..|..++++.|+.++.-...++
T Consensus 306 ~~~dyfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dil 353 (368)
T KOG1113|consen 306 KKGDYFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDIL 353 (368)
T ss_pred chhhhcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999998665544
No 2
>KOG0614|consensus
Probab=99.94 E-value=1e-27 Score=201.01 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=160.9
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||+|+.+|++.+|+++|++.. ..++.+++|..|||+|+|.+.+|+|||+|++++.+|.|+|+.|+.++......
T Consensus 191 ege~Gs~~yV~aeG~~~V~~~g-----~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~ 265 (732)
T KOG0614|consen 191 EGEPGSHLYVSAEGELQVSREG-----KLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLE 265 (732)
T ss_pred cCCCCceEEEeecceEEEeeCC-----eeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998753 78999999999999999999999999999999999999999999997765421
Q ss_pred H---HHHHHHHHHHHHhCCCCCcc--cccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEEC
Q psy8820 81 E---LIHSSKREFMEQLGVKDFSG--LDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAF 153 (234)
Q Consensus 81 ~---l~~~~~~~l~~~l~~~~~~~--l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~ 153 (234)
. ..+.+ +......++++.-+ +.+.+ ..|.+|+.|++| |+.++.+|+|.+|.|++.+......++..+..++
T Consensus 266 r~~~~~~fL-rsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirq-ge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~ 343 (732)
T KOG0614|consen 266 RHEQYMNFL-RSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQ-GEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLN 343 (732)
T ss_pred HHHHHHHHH-HhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEee-cCCCCeEEEEecceEEEeecCCCCCchhHHhhcc
Confidence 1 11111 22222222332221 22222 799999999999 9999999999999999998876655778899999
Q ss_pred CCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCHHhHHHHHhcchHHH
Q psy8820 154 PGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQDDCSTLIDADMNVT 200 (234)
Q Consensus 154 ~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~p~~~ 200 (234)
.||+|||-+++....+++++.|.++ ++|+.|+++.|.+++....++.
T Consensus 344 kGd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 344 KGDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred ccchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 9999999999999999999999877 9999999999999998888776
No 3
>KOG2968|consensus
Probab=99.90 E-value=4.8e-23 Score=181.55 Aligned_cols=232 Identities=31% Similarity=0.454 Sum_probs=182.3
Q ss_pred CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeee----eccccCCC---ceeEEEEccceeEEEeCcccccccc
Q psy8820 2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGL----IEMVTSTS---RNTTVMAVRDSELAKLPEGLCDHLP 74 (234)
Q Consensus 2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe----~~ll~~~~---r~~tv~A~~~~~l~~i~~~~f~~l~ 74 (234)
|++.|.+|++.+|.++|.....+|++..+....||+.|-- ++.+.+.| +..+++|.++|++..+|...|+...
T Consensus 130 ~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~ 209 (1158)
T KOG2968|consen 130 GESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESF 209 (1158)
T ss_pred CCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhh
Confidence 7889999999999999999999999999999999987732 22344554 5678999999999999999999999
Q ss_pred CCCchHH--HHHHHHHHH--------HHHhCCC-----------------------------------------------
Q psy8820 75 RSPSEQE--LIHSSKREF--------MEQLGVK----------------------------------------------- 97 (234)
Q Consensus 75 ~~~p~~~--l~~~~~~~l--------~~~l~~~----------------------------------------------- 97 (234)
..+|+.. ..+.....+ .+.+.+.
T Consensus 210 ~k~P~s~iriiQvvmTRLq~vTf~t~~~YLGL~~el~~~e~~~~l~~~~g~~~~~~~~~g~s~~~lq~~~~~~~~~~s~~ 289 (1158)
T KOG2968|consen 210 HKNPESSIRIIQVVMTRLQRVTLTTLHNYLGLSNELMSIERRKRLDSSEGSTYGNRATIGASSSSLQLLVEIPYSEHSRS 289 (1158)
T ss_pred ccChHHHHHHHHHHHHHHHHhhHHHHHhhcCcchhhhhhhhhccccccccccccCccccCCCCccccccccccccccccc
Confidence 9999511 111110000 0000000
Q ss_pred ---------CCccc---------------------------------------ccee-eeecC-----------------
Q psy8820 98 ---------DFSGL---------------------------------------DIRV-EHIPG----------------- 111 (234)
Q Consensus 98 ---------~~~~l---------------------------------------~~~~-~~~~~----------------- 111 (234)
..+.+ ...+ ..+.+
T Consensus 290 v~~~~~~~n~~dlls~~~~gt~~~~~sv~~l~~~~~~~~~~~~~~s~~~ls~~~t~i~~~~~~~~~~~~~~e~~~~~~~~ 369 (1158)
T KOG2968|consen 290 VKEGSKLFNAGDLLSDSTRGTRKLFASVHGLLIDALLVRDNIQQGSFSMLSKTGTSIHLEIFEGEHKLVEKEGRKISSDG 369 (1158)
T ss_pred ccccccccCCcccccccccCccccccccccccccccchhhhhhhcccccccccCccchhhccCCcccccccccchhhhhh
Confidence 00000 0001 11222
Q ss_pred ------------------------CCEEEEecCCCCceEEEEEeCeEEEEEecCCC-----CccEEEEEECCCceEEeee
Q psy8820 112 ------------------------GTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-----SNDVHLFTAFPGDMIGGLA 162 (234)
Q Consensus 112 ------------------------g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-----~~~~~~~~~~~g~~~G~~~ 162 (234)
.++|.++ |+...++|++.+|.+.+++...+. .....++.++||+++|.++
T Consensus 370 v~~l~~~l~~~~~~si~ll~~~keitiiv~q-~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla 448 (1158)
T KOG2968|consen 370 VDALDLFLGLSNEDSIVLLELEKEITIIVEQ-GARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLA 448 (1158)
T ss_pred HHHHHHHhhhcccchhhhhccccceEEEEec-ccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhh
Confidence 2456788 999999999999999888644332 1357889999999999999
Q ss_pred eeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccceeceeeeccCcccC
Q psy8820 163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 163 ~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (234)
+++|.|+.++++|.+||.++.+++++|.+++.++|.+++.+++.+.++++++++++|.|++|+++++|+++|
T Consensus 449 ~lt~e~S~~tirArsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~aly 520 (1158)
T KOG2968|consen 449 ILTNEPSFITIRARSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALY 520 (1158)
T ss_pred hhcCCcceEEEEEecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>KOG2968|consensus
Probab=99.81 E-value=2.9e-20 Score=164.24 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=170.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCC------cEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccccccc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESG------KRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLP 74 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g------~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~ 74 (234)
||+...+.|.|+.|.+.++...-+- ....+...+||+++|-++++++.|...|++|.+||.++.+++.+|.+++
T Consensus 400 q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isrs~l~~~~ 479 (1158)
T KOG2968|consen 400 QGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISRSDLERFL 479 (1158)
T ss_pred cccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEeeHHHHHHHH
Confidence 6888999999999999776543221 1356778999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 75 RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 75 ~~~p~~~l~~~~~~~l~~~l~~~~~~~l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
...|. ..+... ..+.+++..--. .+...+ ..+.+|+.+++| ||..+++|+|++|.++.......| +..++...
T Consensus 480 ~~~p~-I~L~ia-~svl~~lsp~lr-~~D~AldWv~l~~g~alyrq-gD~Sd~iyvVl~GRlRsv~~~~~~-k~~i~~Ey 554 (1158)
T KOG2968|consen 480 DAEPL-IYLRIA-HSVLRRLSPFLR-KLDFALDWVRLEPGQALYRQ-GDSSDSIYVVLNGRLRSVIRQSGG-KKEIVGEY 554 (1158)
T ss_pred HhCce-EEEehh-hHHHHhcCHHHh-hhhhhcceEEeccccHHHhc-CCccCcEEEEecCeehhhhhccCc-cchhhhhc
Confidence 88882 212222 222222110000 011112 589999999999 999999999999999998765544 55688899
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ 217 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 217 (234)
+.||.+|++.+++++++..|+.|+.|+++.+||...|..+..++|.+..++.+.+++++..-+++
T Consensus 555 grGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~l~~ 619 (1158)
T KOG2968|consen 555 GRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGSLQR 619 (1158)
T ss_pred cCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999998888888877555443
No 5
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.73 E-value=5.2e-17 Score=129.07 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=98.7
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+.+ |++++++|+|++|.++++..+.+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.||
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~ 110 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALP 110 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEE
Confidence 3799999999999 999999999999999999988777 78889999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
++.|.+++.++|.+...+++.+.+++..
T Consensus 111 ~~~~~~ll~~~p~~~~~~~~~l~~~~~~ 138 (226)
T PRK10402 111 MKDCRPLLLNDALFLRKLCKFLSHKNYR 138 (226)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888877544
No 6
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.73 E-value=1.4e-16 Score=125.11 Aligned_cols=106 Identities=17% Similarity=0.340 Sum_probs=96.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEeC
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i~ 185 (234)
++|++|++|+.+ |++++++|+|++|.++++....+| ++..+..+.||++||+.+++.+. ++.++++|.++|+++.|+
T Consensus 23 ~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~ 100 (211)
T PRK11753 23 HKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEIS 100 (211)
T ss_pred EEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEc
Confidence 699999999999 999999999999999999877776 78889999999999999988764 678899999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++.|.+++.++|.+..++++.+..++...
T Consensus 101 ~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 129 (211)
T PRK11753 101 YKKFRQLIQVNPDILMALSAQMARRLQNT 129 (211)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888887777554
No 7
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.72 E-value=2.8e-17 Score=111.47 Aligned_cols=90 Identities=22% Similarity=0.444 Sum_probs=85.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
++|++|++|+++ |+.++++|+|++|.++++....++ +..++..+.+|++||+.+++.+.++.++++|.++|+++.||+
T Consensus 2 ~~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~ 79 (91)
T PF00027_consen 2 KTYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINEDG-KEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPR 79 (91)
T ss_dssp EEESTTEEEEET-TSBESEEEEEEESEEEEEEETTTS-EEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEH
T ss_pred eEECCCCEEEeC-CCcCCEEEEEEECceEEEeceecc-eeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeH
Confidence 589999999999 999999999999999999988776 667899999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchH
Q psy8820 187 DDCSTLIDADMN 198 (234)
Q Consensus 187 ~~~~~l~~~~p~ 198 (234)
++|.++++++|+
T Consensus 80 ~~~~~~~~~~p~ 91 (91)
T PF00027_consen 80 EDFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHHSHH
T ss_pred HHHHHHHHhCcC
Confidence 999999999995
No 8
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.69 E-value=4.7e-16 Score=120.49 Aligned_cols=101 Identities=13% Similarity=0.259 Sum_probs=91.9
Q ss_pred CCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEcCCeEEEEeCHHhH
Q psy8820 112 GTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSRLPATIAWLPQDDC 189 (234)
Q Consensus 112 g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~~~~~~~~i~~~~~ 189 (234)
|+.|+++ |++++++|+|++|.|+++....+| ++.++..+.||++||+.+++.+.++ .++++|.++|.++.||++.|
T Consensus 1 g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~ 78 (193)
T TIGR03697 1 GKTIFFP-GDPAEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQV 78 (193)
T ss_pred CCceecC-CCCCCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHH
Confidence 6889999 999999999999999999888777 7888999999999999999987754 47899999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 190 STLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 190 ~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
.+++.++|.+...+++.+..++...
T Consensus 79 ~~l~~~~p~l~~~~~~~l~~~l~~~ 103 (193)
T TIGR03697 79 EKAIEEDPDLSMLLLQGLSSRILQT 103 (193)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888777654
No 9
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.68 E-value=4.1e-16 Score=124.72 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=96.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++++|+|++|.++++... +| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.||+
T Consensus 33 ~~~~~ge~l~~~-g~~~~~~~~v~~G~v~~~~~~-~~-~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~ 109 (236)
T PRK09392 33 QRFPPGTMLITE-GEPADFLFVVLDGLVELSASS-QD-RETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPA 109 (236)
T ss_pred eecCCCCEEEeC-CCccceEEEEEeCEEEEEEcC-CC-ceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeH
Confidence 699999999999 999999999999999999765 44 467889999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+.|.+++.++|.+...+++.+..++...
T Consensus 110 ~~~~~l~~~~p~l~~~~~~~l~~~~~~~ 137 (236)
T PRK09392 110 ELVREAMSEDPGFMRAVVFELAGCYRGL 137 (236)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887666554
No 10
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.68 E-value=6e-16 Score=121.20 Aligned_cols=107 Identities=21% Similarity=0.375 Sum_probs=100.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|++|+.+ |++.+++|+|.+|.++++....+| ++.++.++.||++||+.+++.+.|+.++++|.+||+++.+++
T Consensus 26 ~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~ 103 (214)
T COG0664 26 RKLPKGEVLFTE-GEEADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPR 103 (214)
T ss_pred EeeCCCCEEEcC-CCcCceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecH
Confidence 699999999999 999999999999999999998886 789999999999999999999889999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
+.|.+++.++|.+...++..+.+++....
T Consensus 104 ~~~~~~~~~~p~l~~~l~~~~~~~l~~~~ 132 (214)
T COG0664 104 KDFLELLAESPKLALALLRLLARRLRQAL 132 (214)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888777653
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.66 E-value=2.6e-15 Score=119.60 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+.+ |+.++++|+|++|.++++..+.+| ++.++..+.||++||+. .+.++.++++|.++|.++.|+
T Consensus 40 ~~~~~kge~l~~~-Gd~~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~ 114 (230)
T PRK09391 40 EFSYKKGEEIYGE-GEPADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIK 114 (230)
T ss_pred eEEECCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceeccc---CCCcCCeEEEEcCceEEEEEE
Confidence 3899999999999 999999999999999999988777 67888899999999964 466778999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++.|.+++.++|.+...+++.+.+++...
T Consensus 115 ~~~f~~l~~~~p~l~~~l~~~l~~~l~~~ 143 (230)
T PRK09391 115 RRSLEQAAATDVDVARALLSLTAGGLRHA 143 (230)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777653
No 12
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.63 E-value=4.8e-15 Score=118.41 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=92.6
Q ss_pred eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
.|++|++|+++ |+.++++|+|.+|.++++..+.+| ++.++.++.||++||+.+++. .+...+++|.++|+++.||++
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~ 117 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFE 117 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceeccccccC-CCCcceEEEeccEEEEEEEHH
Confidence 79999999999 999999999999999999988777 788888999999999876654 445578999999999999999
Q ss_pred hHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 188 DCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 188 ~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
.|.+++.++|.+...+++.+..++...
T Consensus 118 ~f~~l~~~~p~~~~~~~~~~~~~~~~~ 144 (235)
T PRK11161 118 TLDDLSGKMPKLRQQIMRLMSGEIKGD 144 (235)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877666543
No 13
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.60 E-value=1.1e-14 Score=113.63 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=84.3
Q ss_pred eeecCCCEEEEecCC--CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVV--EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~--~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
+.|++|++|+.+ |+ +++++|+|++|.++++..+.+| ++.++..+.|||+||+.++ .+.++++++.|.++|+++.|
T Consensus 9 ~~~~kg~~l~~~-Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~~~~-~~~~~~~~~~A~~~~~v~~i 85 (202)
T PRK13918 9 VTYRPGAVILYP-GVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGEEAL-AGAERAYFAEAVTDSRIDVL 85 (202)
T ss_pred eEecCCCEEEcC-CCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeechHHh-cCCCCCceEEEcCceEEEEE
Confidence 689999999999 99 7799999999999999988887 7899999999999999655 46778899999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++.| +|.+...++..+.+++...
T Consensus 86 ~~~~~------~~~~~~~l~~~l~~~~~~~ 109 (202)
T PRK13918 86 NPALM------SAEDNLVLTQHLVRTLARA 109 (202)
T ss_pred EHHHc------ChhhHHHHHHHHHHHHHHH
Confidence 99887 4666666666666555544
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.58 E-value=2.4e-15 Score=101.91 Aligned_cols=78 Identities=31% Similarity=0.424 Sum_probs=74.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+|++.+++|+|++|.++++....+|+...+..+.+|++||+.+++.+.|+.++++|.++|+++.||++.|..+++++|
T Consensus 13 ~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 13 QGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp TTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHHHHHHHHHSH
T ss_pred CCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHHHHHHHHhCc
Confidence 689999999999999999999999988889999999999999999999999999999999999999999999988877
No 15
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.58 E-value=1.3e-14 Score=102.01 Aligned_cols=95 Identities=22% Similarity=0.376 Sum_probs=88.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|++|+.+ |++.+++|+|.+|.++++....+| ++..+..+.+|++||...++.+.++.++++|.++|+++.|+.
T Consensus 20 ~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~ 97 (115)
T cd00038 20 RRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPR 97 (115)
T ss_pred eeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeH
Confidence 589999999999 999999999999999999887776 678899999999999999888888999999999999999999
Q ss_pred HhHHHHHhcchHHHHHH
Q psy8820 187 DDCSTLIDADMNVTLKI 203 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~ 203 (234)
+.|.+++.++|.+..++
T Consensus 98 ~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 98 SDFRRLLQEYPELARRL 114 (115)
T ss_pred HHHHHHHHHCcHhHHhc
Confidence 99999999999887554
No 16
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.54 E-value=4.2e-14 Score=109.51 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=74.1
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC--ceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS--RNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~--r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+.+++|+|.+|.|+++...++|++..+..++||++||+.+++.+.+ +.++++|.++|+++.+|++.|..++..+|
T Consensus 7 ~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 86 (193)
T TIGR03697 7 PGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEKAIEEDP 86 (193)
T ss_pred CCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHHHHHHCh
Confidence 6999999999999999999999999999999999999999999998875 56889999999999999999999999998
Q ss_pred h
Q psy8820 79 E 79 (234)
Q Consensus 79 ~ 79 (234)
.
T Consensus 87 ~ 87 (193)
T TIGR03697 87 D 87 (193)
T ss_pred H
Confidence 3
No 17
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.53 E-value=4.8e-14 Score=112.04 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+.+.+|+|.+|.|+++....+|++..+..+.||++||+.+++.+.|+.++++|.++|+++.+|++.|..++..+|
T Consensus 45 ~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p 122 (226)
T PRK10402 45 EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDA 122 (226)
T ss_pred CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999988
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.52 E-value=5.1e-14 Score=110.19 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
|||+++++|+|.+|.++++...++|++..+..++|||+|||.+++.+.||+++++|.++|+++.+|++.|..++...|
T Consensus 37 ~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p 114 (214)
T COG0664 37 EGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESP 114 (214)
T ss_pred CCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHHHHHHHHhhCc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988877655
No 19
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.51 E-value=2.5e-13 Score=95.85 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=87.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeee--eCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVL--TGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l--~~~~~~~~v~A~~~~~~~~i 184 (234)
+.+++|++|+++ |++++++|+|.+|.++++....+| ++..+..+.+|++||+..++ ...+...+++|.++|.++.+
T Consensus 20 ~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 97 (120)
T smart00100 20 VRYPAGEVIIRQ-GDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGELALLTNSRRAASATAVALELATLLRI 97 (120)
T ss_pred EEeCCCCEEEeC-CCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceechhhhccCCCcccceEEEEEeeEEEEcc
Confidence 589999999999 999999999999999999876665 78889999999999999888 35677789999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHH
Q psy8820 185 PQDDCSTLIDADMNVTLKIAH 205 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~ 205 (234)
+.+.|...+.+++.+...++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 98 DFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred CHHHHHHHHHHhHHHHHHHHh
Confidence 999999999999988766654
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.50 E-value=2.3e-13 Score=126.70 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=96.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|+||+.|+.| |+.++.+|||.+|.|++... .++ ++.++..+++|++|||.+++.+.|+.++++|.++|+++.|++
T Consensus 400 ~~~~pge~I~~q-ge~~~~lY~I~~G~V~i~~~-~~~-~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~ 476 (823)
T PLN03192 400 EYIPPREDVIMQ-NEAPDDVYIVVSGEVEIIDS-EGE-KERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKT 476 (823)
T ss_pred eeeCCCCEEEEC-CCCCceEEEEEecEEEEEEe-cCC-cceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEH
Confidence 789999999999 99999999999999999853 233 688899999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++|.++++++|+....+++++.+++.+.
T Consensus 477 ~~f~~ll~~~p~d~~~i~~~~l~~~~~l 504 (823)
T PLN03192 477 STLIEAMQTRQEDNVVILKNFLQHHKEL 504 (823)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988876554
No 21
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.50 E-value=1.6e-13 Score=107.72 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+.+.+|+|++|.++++....+|++..+..+++||+||+.+++.+. ++.++++|.++|+++.+|++.|..++..+|+
T Consensus 34 ~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 113 (211)
T PRK11753 34 AGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 113 (211)
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHH
Confidence 689999999999999999998889999999999999999999999864 7889999999999999999999999999883
No 22
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.41 E-value=8e-13 Score=105.67 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.|+.++++|.++|+++.+|.+.|..++..+|.
T Consensus 44 ~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 121 (236)
T PRK09392 44 EGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPG 121 (236)
T ss_pred CCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHH
Confidence 6999999999999999999864 66788899999999999999999999999999999999999999999999999884
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.40 E-value=1e-12 Score=112.47 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=94.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
..|.+|++|+.. |.+..++|+|.+|.|.++... | ..+..+..||+||..++++..+......|.+|+.|+.||+
T Consensus 33 ~yy~kge~ii~~-~~p~~~l~vi~kG~vev~~~~--g---~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~ 106 (610)
T COG2905 33 KYYRKGEIIIYA-GSPVHYLYVIRKGVVEVRSDG--G---EVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPK 106 (610)
T ss_pred ccccCCCeeecC-CCCcceeEEEEeceeeEEcCC--C---eeeeeeccCccccchhhcccCCCcceeEeeccceEEecCH
Confidence 499999999999 999999999999999998643 3 3888999999999999999888888889999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
+.|.++++++|.|..++...++.|++...
T Consensus 107 s~F~ql~~~n~~f~~ff~~~~akR~~~~~ 135 (610)
T COG2905 107 SVFMQLMEENPEFADFFLRSLAKRLRDIA 135 (610)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653
No 24
>KOG1113|consensus
Probab=99.39 E-value=1.1e-12 Score=106.42 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=96.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|+.|+.| |+.++.+|+|-+|.+.||.. ...+..+.||..|||++++.+.|+.+|+.|.+++.+|.+++
T Consensus 148 ~~v~~G~~Vi~q-GdeGd~fYvI~kGt~dVyv~------~~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr 220 (368)
T KOG1113|consen 148 KRVKAGETVIKQ-GDEGDNFYVIDKGTFDVYVN------GTYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDR 220 (368)
T ss_pred eeecCCcEEEec-CCcCCcEEEEecceEEEEEC------CeEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEee
Confidence 889999999999 99999999999999999985 35677899999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhh------chhhh-hccceeceeeeccCc
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRM------SPFVR-QFDFALDWVFLEGGQ 231 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~------~~~~~-~~~~~l~~~~~~~~~ 231 (234)
..|.+++-.+......+.....+.+ ..+-| .+--+|....++.|+
T Consensus 221 ~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~ 272 (368)
T KOG1113|consen 221 TSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGE 272 (368)
T ss_pred ceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCc
Confidence 9999998887766555555444322 22222 233346667777664
No 25
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.37 E-value=1.2e-12 Score=91.81 Aligned_cols=78 Identities=35% Similarity=0.436 Sum_probs=74.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+|++.+.+|+|.+|.++++....+|++..+..+.+|++||+.+++.+.++..+++|.++|.++.|+++.|..++.++|
T Consensus 31 ~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 31 QGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 588999999999999999999999999999999999999999999899999999999999999999999999988887
No 26
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.37 E-value=4.8e-12 Score=100.85 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=70.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|++|.|+++...++|++.++..+.+||+||+. .+.++.++++|.++|+++.+|.+.|..++..+|+
T Consensus 52 ~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~ 127 (230)
T PRK09391 52 EGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVD 127 (230)
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEEEEEEHHHHHHHHhhChH
Confidence 699999999999999999999999999999999999999964 4678899999999999999999999999999983
No 27
>KOG0498|consensus
Probab=99.36 E-value=8.1e-13 Score=118.25 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=92.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE-eeeeeeC-cceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG-GLAVLTG-EASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G-~~~~l~~-~~~~~~v~A~~~~~~~~i 184 (234)
..+++|+.|++| |++.+.+|||.+|.+++...+.+ .+.....++|||+|| |+..... .|+++||+|.+.|+++.|
T Consensus 445 ~~f~pge~iire-Gd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L 521 (727)
T KOG0498|consen 445 EYFTPGEYIIRE-GDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRL 521 (727)
T ss_pred hccCCCCeEEec-CCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhc
Confidence 799999999999 99999999999999999876543 588899999999999 7777766 888999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
.+++|...++++|.+...+.++..+-++.
T Consensus 522 ~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 522 SADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred cHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99999999999999988887755544444
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.36 E-value=6.1e-12 Score=98.12 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCC--CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccc
Q psy8820 1 QYD--RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLC 70 (234)
Q Consensus 1 ~Gd--~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f 70 (234)
||| +++++|+|++|.|+++...++|++..+..+.|||+||+.+++ +.++++++.|.++|+++.||++.|
T Consensus 20 ~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 20 PGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred CCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEEEEEHHHc
Confidence 688 679999999999999999999999999999999999997654 678999999999999999999887
No 29
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.32 E-value=9.7e-12 Score=99.31 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+.+++|+|.+|.|+++..+.+|++..+..+.|||+||+..++. .++..++.|.++|+++.+|++.|..++..+|+
T Consensus 51 ~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~ 128 (235)
T PRK11161 51 AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPK 128 (235)
T ss_pred CCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChH
Confidence 6999999999999999999999999999999999999999977654 45667999999999999999999999999984
No 30
>KOG0614|consensus
Probab=99.26 E-value=1.4e-12 Score=110.82 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=78.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
..|++|+.|++| |++++++|++.+|.+.|.+. ...+..+++|.+|||+++|.+.+++++|+|+++|.+|.|++
T Consensus 180 ~~~~~gs~IIre-ge~Gs~~yV~aeG~~~V~~~------g~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR 252 (732)
T KOG0614|consen 180 VEYRAGSWIIRE-GEPGSHLYVSAEGELQVSRE------GKLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDR 252 (732)
T ss_pred ccccCCcEEEec-CCCCceEEEeecceEEEeeC------CeeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHH
Confidence 799999999999 99999999999999999863 57889999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc
Q psy8820 187 DDCSTLIDAD 196 (234)
Q Consensus 187 ~~~~~l~~~~ 196 (234)
+.|+.++...
T Consensus 253 ~vFq~IM~~t 262 (732)
T KOG0614|consen 253 EVFQAIMMRT 262 (732)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 31
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.25 E-value=1.6e-11 Score=114.43 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
|||+++.+|+|.+|.|+++. ..+|++.+++.+++||+|||.+++.+.|+++|++|.++|+++.|+++.|..+++.+|+
T Consensus 411 qge~~~~lY~I~~G~V~i~~-~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 411 QNEAPDDVYIVVSGEVEIID-SEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred CCCCCceEEEEEecEEEEEE-ecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 68999999999999999985 4567788899999999999999999999999999999999999999999999999984
No 32
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.23 E-value=4e-11 Score=84.44 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc--cCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV--TSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll--~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+|++.+++|+|.+|.++++....+|++..+..+.+|++||+..++ ...++..++.|.++|+++.++.+.|.......+
T Consensus 31 ~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 31 QGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred CCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 689999999999999999998888999999999999999999998 446888999999999999999999988877766
No 33
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.22 E-value=1e-10 Score=100.95 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=80.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
++|++|++|+++ |+.++++|+|++|.++++....+| +.++..+++|++||+. +.+.++.++++|.++|+++.|++
T Consensus 34 ~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~g--e~~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~ 108 (413)
T PLN02868 34 KRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEEE--SRPEFLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPH 108 (413)
T ss_pred EEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCCC--cEEEEEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcH
Confidence 799999999999 999999999999999999887665 6788899999999975 67888999999999999999999
Q ss_pred HhHHHHHhcchHHH
Q psy8820 187 DDCSTLIDADMNVT 200 (234)
Q Consensus 187 ~~~~~l~~~~p~~~ 200 (234)
+.|..+...++-..
T Consensus 109 ~~~~~~~~~~~~~~ 122 (413)
T PLN02868 109 EHCHLLSPKSIWDS 122 (413)
T ss_pred HHHhhhcccccccc
Confidence 99999888776543
No 34
>KOG0500|consensus
Probab=99.09 E-value=2.5e-09 Score=90.44 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=84.3
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee------CcceEEEEEEcCCeE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT------GEASVFTIQSRLPAT 180 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~------~~~~~~~v~A~~~~~ 180 (234)
+-|.||+.|.+. ||.+..+|+|.+|.++|...+ | ......+.+|++|||++++. |..++++++.+.-+.
T Consensus 333 qvfSPgDyICrK-GdvgkEMyIVk~G~L~Vv~dD--g--~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSD 407 (536)
T KOG0500|consen 333 QVFSPGDYICRK-GDVGKEMYIVKEGKLAVVADD--G--VTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSD 407 (536)
T ss_pred eeeCCCCeEEec-CcccceEEEEEccEEEEEecC--C--cEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccce
Confidence 889999999999 999999999999999998643 3 56788899999999999873 567889999999999
Q ss_pred EEEeCHHhHHHHHhcchHHHHHHHH
Q psy8820 181 IAWLPQDDCSTLIDADMNVTLKIAH 205 (234)
Q Consensus 181 ~~~i~~~~~~~l~~~~p~~~~~~~~ 205 (234)
++.++++++.+.++++|+-...+..
T Consensus 408 lfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 408 LFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred eeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998766653
No 35
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.04 E-value=7.6e-10 Score=95.55 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS 76 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~ 76 (234)
+||+.+.+|+|++|.|+++....+| +..+..+++|++||+. +.+.++.++++|.++|+++.||++.|+.+...
T Consensus 45 ~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~ 117 (413)
T PLN02868 45 EGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPK 117 (413)
T ss_pred CCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence 6899999999999999999988887 6788999999999985 78899999999999999999999999776443
No 36
>KOG0499|consensus
Probab=99.02 E-value=5.2e-09 Score=90.33 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=83.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee---CcceEEEEEEcCCeEEEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT---GEASVFTIQSRLPATIAW 183 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~---~~~~~~~v~A~~~~~~~~ 183 (234)
+.|=+|+.|.+. |+.+..+|+|..|.|+|.-. .+| +.++.++..|.+|||++++. +..++++|+|...|.++.
T Consensus 553 V~yLPgDfVCkK-GeiGkEMYIIk~GqvQVlGG-p~~--~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfv 628 (815)
T KOG0499|consen 553 VLYLPGDFVCKK-GEIGKEMYIIKHGQVQVLGG-PDG--TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFV 628 (815)
T ss_pred eeecCCceeeec-ccccceeEEeecceEEEecC-CCC--CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeE
Confidence 789999999999 99999999999999999743 343 78999999999999999983 566789999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHH
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAH 205 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~ 205 (234)
++++++++++..+|.-...+.+
T Consensus 629 L~KkdLneil~~YP~sq~iLrk 650 (815)
T KOG0499|consen 629 LDKKDLNEILVHYPDSQRILRK 650 (815)
T ss_pred ecHhHHHHHHHhCccHHHHHHH
Confidence 9999999999999986544433
No 37
>KOG0498|consensus
Probab=98.87 E-value=1.7e-09 Score=97.30 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee-eeccccC-CCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG-LIEMVTS-TSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG-e~~ll~~-~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
|||+.+.+|||.+|++++..... |.+.....+++||+|| |+..... .|.++||+|.|.|++..|.+++|..++..+|
T Consensus 456 eGd~v~~myFI~rG~le~~~~~~-g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~ 534 (727)
T KOG0498|consen 456 EGDPVTDMYFIVRGSLESITTDG-GGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFR 534 (727)
T ss_pred cCCccceeEEEEeeeEEEEEccC-CceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhH
Confidence 79999999999999999887654 4678889999999999 8888866 7889999999999999999999999988887
Q ss_pred h
Q psy8820 79 E 79 (234)
Q Consensus 79 ~ 79 (234)
.
T Consensus 535 ~ 535 (727)
T KOG0498|consen 535 R 535 (727)
T ss_pred H
Confidence 3
No 38
>KOG0499|consensus
Probab=98.82 E-value=9.2e-09 Score=88.82 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=68.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc---cCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV---TSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP 77 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll---~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~ 77 (234)
.||.|..+|||..|.|+|.- .++| +.++.++..|.+|||++|| .+.+|+|+|+|..-|.++++++.+++.++..+
T Consensus 564 KGeiGkEMYIIk~GqvQVlG-Gp~~-~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y 641 (815)
T KOG0499|consen 564 KGEIGKEMYIIKHGQVQVLG-GPDG-TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHY 641 (815)
T ss_pred cccccceeEEeecceEEEec-CCCC-CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence 48899999999999999874 4555 4778999999999999999 34589999999999999999999999999999
Q ss_pred ch
Q psy8820 78 SE 79 (234)
Q Consensus 78 p~ 79 (234)
|+
T Consensus 642 P~ 643 (815)
T KOG0499|consen 642 PD 643 (815)
T ss_pred cc
Confidence 96
No 39
>KOG0500|consensus
Probab=98.77 E-value=1.4e-08 Score=86.04 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeecccc------CCCceeEEEEccceeEEEeCcccccccc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVT------STSRNTTVMAVRDSELAKLPEGLCDHLP 74 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~------~~~r~~tv~A~~~~~l~~i~~~~f~~l~ 74 (234)
.||.+..+|||.+|.+.|+.. ||+ .....+++|++|||++++. |.+|+|+++.+..|.+..++++++...+
T Consensus 344 KGdvgkEMyIVk~G~L~Vv~d--Dg~-t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL 420 (536)
T KOG0500|consen 344 KGDVGKEMYIVKEGKLAVVAD--DGV-TVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEAL 420 (536)
T ss_pred cCcccceEEEEEccEEEEEec--CCc-EEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHH
Confidence 489999999999999988764 443 5567899999999999983 5689999999999999999999999999
Q ss_pred CCCch
Q psy8820 75 RSPSE 79 (234)
Q Consensus 75 ~~~p~ 79 (234)
.++|+
T Consensus 421 ~eYP~ 425 (536)
T KOG0500|consen 421 SEYPD 425 (536)
T ss_pred HhCCH
Confidence 99995
No 40
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.60 E-value=9.1e-08 Score=82.66 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=67.3
Q ss_pred CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
|.|.+++|+|.+|.|.+... +| .++..+..||+||-.+++++.+....+.|.+|+.++.||++.|+.+..++|+
T Consensus 45 ~~p~~~l~vi~kG~vev~~~--~g--~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~ 118 (610)
T COG2905 45 GSPVHYLYVIRKGVVEVRSD--GG--EVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPE 118 (610)
T ss_pred CCCcceeEEEEeceeeEEcC--CC--eeeeeeccCccccchhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcH
Confidence 45788999999999998764 45 4889999999999999999999999999999999999999999999999985
No 41
>KOG0501|consensus
Probab=98.21 E-value=1.5e-06 Score=75.51 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=81.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeC--cceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTG--EASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~--~~~~~~v~A~~~~~~~~i 184 (234)
.+..||+.|++. |+..+.+.||++|.++|.+. ...+..++.||+||+.---.+ ..+-++|+|++-|.+-.|
T Consensus 574 ~H~APGDLlYHt-GESvDaLcFvVsGSLEVIQD------DEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~I 646 (971)
T KOG0501|consen 574 NHCAPGDLLYHT-GESVDALCFVVSGSLEVIQD------DEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMI 646 (971)
T ss_pred ccCCCcceeeec-CCccceEEEEEecceEEeec------CcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHH
Confidence 688999999999 99999999999999999874 357889999999998633221 234578999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHH
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVL 208 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~ 208 (234)
.++.+.+.++=+..|+..+++++.
T Consensus 647 Krd~Ll~VLdFYtAFanSFaRNl~ 670 (971)
T KOG0501|consen 647 KRDKLLKVLDFYTAFANSFARNLT 670 (971)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcee
Confidence 999999999999988888887654
No 42
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=98.07 E-value=0.00013 Score=56.53 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=76.2
Q ss_pred eeecCCCEE-EEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 107 EHIPGGTCL-VREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 107 ~~~~~g~~i-~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
..+++|..+ ... ......++++++|.+.+. . .| ...+.+.....+||....+.+....+.++|.++|++..+|
T Consensus 25 ~~~~~~~~~i~~~-~~~~~~~~ll~~G~vsir-r-~d---~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~ 98 (207)
T PRK11832 25 FEFNNEKQVIFSS-DVNNEDTFVILEGVISLR-R-EE---NVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLP 98 (207)
T ss_pred EecCCCcEEeccc-cCCCceEEEEEeceEEEE-e-cC---CeEEEeccCCeEeecccccCCCCceEEEEEcCccEEEEee
Confidence 578888886 555 455578999999999994 3 23 3677788888999988777776667899999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKR 210 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~ 210 (234)
.++|.++++++. +...+++.+.-.
T Consensus 99 ~~~~~~iie~~~-LW~~~~~~l~~~ 122 (207)
T PRK11832 99 AKQTITLIEQNQ-LWRDAFYWLAWQ 122 (207)
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHH
Confidence 999999999886 555555555443
No 43
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.90 E-value=0.00044 Score=50.37 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=79.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeee-----eCcceEEEEEEcCCeE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVL-----TGEASVFTIQSRLPAT 180 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l-----~~~~~~~~v~A~~~~~ 180 (234)
+..+++|+.-.-|+-.+.+.+-++++|.++|... ...+..+.|-++...-.-. .+..--.|++|.++|.
T Consensus 30 i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~------g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cr 103 (153)
T PF04831_consen 30 IRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD------GRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCR 103 (153)
T ss_pred EEEecCCceeeecCCcccceEeEEEcCcEEEEEC------CEeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcE
Confidence 4689999999988457778999999999999863 3567777887776543222 2333457899999999
Q ss_pred EEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 181 IAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 181 ~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
.+.++++.+..++.++|-+..-+...+.+.+.+-
T Consensus 104 yl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~K 137 (153)
T PF04831_consen 104 YLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEK 137 (153)
T ss_pred EEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766655555555544
No 44
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.21 E-value=0.0021 Score=49.87 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=58.8
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+.+|+|.+|.+.+. . .++ ..+....+--+||-...+.+.......+|.++|++..+|.+.|..++.+..
T Consensus 42 ~~~~ll~~G~vsir-r-~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 42 EDTFVILEGVISLR-R-EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ceEEEEEeceEEEE-e-cCC--eEEEeccCCeEeecccccCCCCceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 56999999999984 3 455 777888899999988888777777899999999999999999998887754
No 45
>KOG0501|consensus
Probab=97.18 E-value=9.6e-05 Score=64.60 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=55.8
Q ss_pred CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC--CceeEEEEccceeEEEeCccccccc
Q psy8820 2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST--SRNTTVMAVRDSELAKLPEGLCDHL 73 (234)
Q Consensus 2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~--~r~~tv~A~~~~~l~~i~~~~f~~l 73 (234)
|+.-|++.+|++|+++|...+ .+++.++.||+||+.-.-... ...|+|+|++.|.+-.|.|+.+...
T Consensus 586 GESvDaLcFvVsGSLEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~V 654 (971)
T KOG0501|consen 586 GESVDALCFVVSGSLEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKV 654 (971)
T ss_pred CCccceEEEEEecceEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHH
Confidence 778899999999999998764 688999999999987655442 5668999999999999988876544
No 46
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.53 E-value=0.018 Score=42.14 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeecc-----ccCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEM-----VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP 77 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~l-----l~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~ 77 (234)
.+.|.+-++++|+++|+.. | ..+..+.|-++.--... -.+.....|++|.++|..+.++|+.+..++...
T Consensus 45 T~~drLSlLLsGr~~Vs~~---g--~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 45 TPIDRLSLLLSGRMRVSCD---G--RFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred cccceEeEEEcCcEEEEEC---C--EeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 3678999999999999875 3 55666666655432222 245567899999999999999999999988887
Q ss_pred c
Q psy8820 78 S 78 (234)
Q Consensus 78 p 78 (234)
|
T Consensus 120 ~ 120 (153)
T PF04831_consen 120 P 120 (153)
T ss_pred H
Confidence 7
No 47
>PRK11171 hypothetical protein; Provisional
Probab=94.14 E-value=2.6 Score=34.31 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=75.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-CchHHHH
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSEQELI 83 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~~~l~ 83 (234)
.+.+++|++|++.+... |+ ...+.+||++ .+=.+.++.......++++++.+ ...|..+-.. .|. .+.
T Consensus 83 ~eE~~~VlsG~l~v~~~---g~---~~~L~~GDsi---~~p~~~~H~~~N~g~~~a~~l~v-~~~y~~~~~~~~p~-~~~ 151 (266)
T PRK11171 83 AETFLFVVEGEITLTLE---GK---THALSEGGYA---YLPPGSDWTLRNAGAEDARFHWI-RKRYEPVEGHEAPE-AFV 151 (266)
T ss_pred ceEEEEEEeCEEEEEEC---CE---EEEECCCCEE---EECCCCCEEEEECCCCCEEEEEE-EcCCeEcCCCCCCC-eEe
Confidence 36799999999988753 43 3469999885 12245566665555667777766 2333322221 121 011
Q ss_pred HHHHHHHHHH-hC-----------CCCCc-cc--cceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820 84 HSSKREFMEQ-LG-----------VKDFS-GL--DIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH 148 (234)
Q Consensus 84 ~~~~~~l~~~-l~-----------~~~~~-~l--~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~ 148 (234)
... ..+... +. +...+ .. ......+++|..+-........+.++|++|...+.... .
T Consensus 152 ~~~-~d~~~~~~~g~~g~~~~~~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-------~ 223 (266)
T PRK11171 152 GNE-SDIEPIPMPGTDGVWATTRLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-------D 223 (266)
T ss_pred cch-hcccccccCCCCCeEEEEEeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-------E
Confidence 111 111000 00 00101 11 11227889998877631566779999999999997532 2
Q ss_pred EEEECCCceEE
Q psy8820 149 LFTAFPGDMIG 159 (234)
Q Consensus 149 ~~~~~~g~~~G 159 (234)
...+.+||++-
T Consensus 224 ~~~l~~GD~i~ 234 (266)
T PRK11171 224 WVEVEAGDFIW 234 (266)
T ss_pred EEEeCCCCEEE
Confidence 34678999654
No 48
>KOG3542|consensus
Probab=93.52 E-value=0.14 Score=46.33 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=58.3
Q ss_pred eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEE-EcCCeEEEEeCH
Q psy8820 108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ-SRLPATIAWLPQ 186 (234)
Q Consensus 108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~-A~~~~~~~~i~~ 186 (234)
--.+|++|... |+.-+.+++|++|.|++...+ | +.. .+.-|+.||...-...+-..--.+ -+.||+...|..
T Consensus 309 Ve~AGtivL~d-geeLDSWsVIlNG~VEv~~Pd--G-k~e---~l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVciaq 381 (1283)
T KOG3542|consen 309 VEDAGTIVLAD-GEELDSWSVILNGCVEVVKPD--G-KRE---ELKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQ 381 (1283)
T ss_pred HhhcCeEEecC-CcccceeEEEecceEEEecCC--C-ceE---EeecccccCCCCCcchhhhhhhhheecccceEEEeeh
Confidence 34789999999 999999999999999998754 4 222 345688888644332221111123 378899999999
Q ss_pred HhHHHHHhcc
Q psy8820 187 DDCSTLIDAD 196 (234)
Q Consensus 187 ~~~~~l~~~~ 196 (234)
.+|-.++.+-
T Consensus 382 qDycrIln~v 391 (1283)
T KOG3542|consen 382 QDYCRILNTV 391 (1283)
T ss_pred hhHHHHHHHH
Confidence 9988777653
No 49
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=93.51 E-value=0.038 Score=22.63 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=10.8
Q ss_pred ceeeeccCcccC
Q psy8820 223 DWVFLEGGQAVY 234 (234)
Q Consensus 223 ~~~~~~~~~~~~ 234 (234)
.|+.++.|||+|
T Consensus 2 hWL~~~~GqP~Y 13 (13)
T PF04648_consen 2 HWLRLSPGQPMY 13 (13)
T ss_pred cceeccCCCcCC
Confidence 589999999998
No 50
>KOG3542|consensus
Probab=93.23 E-value=0.092 Score=47.39 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEE-EEccceeEEEeCccccccccC
Q psy8820 2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTV-MAVRDSELAKLPEGLCDHLPR 75 (234)
Q Consensus 2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv-~A~~~~~l~~i~~~~f~~l~~ 75 (234)
|+.-|+||+|+.|.|+|+. ++|+... +.-|+.||--+-...+-...-+ +-+.||+...|...+|.+++.
T Consensus 320 geeLDSWsVIlNG~VEv~~--PdGk~e~---l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln 389 (1283)
T KOG3542|consen 320 GEELDSWSVILNGCVEVVK--PDGKREE---LKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILN 389 (1283)
T ss_pred CcccceeEEEecceEEEec--CCCceEE---eecccccCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHH
Confidence 6778999999999999886 5676554 7789999977665443322222 346899999999988877653
No 51
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=91.92 E-value=2.4 Score=34.43 Aligned_cols=133 Identities=11% Similarity=0.203 Sum_probs=72.6
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccC-CCchHHHHH
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPR-SPSEQELIH 84 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~-~~p~~~l~~ 84 (234)
+.+.+|++|++.+... |+ ...+.+||++= +=.+.++.......++++++.+ +..|+.+-. ..|. ....
T Consensus 81 ee~iyVl~G~l~v~~~---g~---~~~L~~Gd~~y---~pa~~~H~~~N~~~~~a~~l~v-~k~y~~~~g~~~~~-~vvg 149 (260)
T TIGR03214 81 ETFLFVISGEVNVTAE---GE---THELREGGYAY---LPPGSKWTLANAQAEDARFFLY-KKRYQPVEGLHAPE-LVVG 149 (260)
T ss_pred EEEEEEEeCEEEEEEC---CE---EEEECCCCEEE---ECCCCCEEEEECCCCCEEEEEE-EeeeEEcCCCCCCC-eeec
Confidence 6899999999988753 32 24699999862 2234455554445556666655 344444433 2221 0000
Q ss_pred HHHHHHHHH-h----------CCC-CCc-cccceeeeecCCCEEE-EecCCCCceEEEEEeCeEEEEEecCCCCccEEEE
Q psy8820 85 SSKREFMEQ-L----------GVK-DFS-GLDIRVEHIPGGTCLV-REEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF 150 (234)
Q Consensus 85 ~~~~~l~~~-l----------~~~-~~~-~l~~~~~~~~~g~~i~-~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~ 150 (234)
.. ..+... + .++ +.. -+..++.++++|..+- .+ -....+.++|++|...+... | ...
T Consensus 150 ~~-~dv~~~~~~g~~~~~~~~llp~~~~~~~~~~~~~~~PG~~~~~~~-~H~~eh~~yiL~G~G~~~~~---g----~~~ 220 (260)
T TIGR03214 150 NE-KDIEPEPYEGMDDVILTTLLPKELAFDMNVHILSFEPGASHPYIE-THVMEHGLYVLEGKGVYNLD---N----NWV 220 (260)
T ss_pred CH-HHCCccccCCCCcEEEEEeCchhcCCCcEEEEEEECCCcccCCcc-cccceeEEEEEeceEEEEEC---C----EEE
Confidence 00 000000 0 011 000 1122337889998884 34 44566888999999988642 2 234
Q ss_pred EECCCceE
Q psy8820 151 TAFPGDMI 158 (234)
Q Consensus 151 ~~~~g~~~ 158 (234)
.+.+||++
T Consensus 221 ~V~~GD~i 228 (260)
T TIGR03214 221 PVEAGDYI 228 (260)
T ss_pred EecCCCEE
Confidence 57888864
No 52
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=91.63 E-value=8 Score=33.14 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+..+.+|++|++++...+.+|+.. ...+++||+|
T Consensus 87 ~~E~~yVl~G~~~v~~~d~~g~~~-~~~L~~GD~~ 120 (367)
T TIGR03404 87 EAEWAYVLYGSCRITAVDENGRNY-IDDVGAGDLW 120 (367)
T ss_pred CceEEEEEeeEEEEEEEcCCCcEE-EeEECCCCEE
Confidence 457999999999999876666543 3489999987
No 53
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=90.41 E-value=0.58 Score=30.04 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+..|++|++.+... +|.. ..+++||.|
T Consensus 25 ~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~ 54 (74)
T PF05899_consen 25 EDEFFYVLEGEVTITDE--DGET---VTFKAGDAF 54 (74)
T ss_dssp SEEEEEEEEEEEEEEET--TTEE---EEEETTEEE
T ss_pred CCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEE
Confidence 37788999999988753 6644 459999987
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=89.64 E-value=2.1 Score=31.93 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCcc
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEG 68 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~ 68 (234)
+++.+|.+++|.+.+-.... |+.+ .-.+++||+| ++ .+.|++. ++..+|.++.|.+.
T Consensus 47 ~tdE~FyqleG~~~l~v~d~-g~~~-~v~L~eGd~f----lvP~gvpHsP--~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEE-GKRE-DVPIREGDIF----LLPPHVPHSP--QRPAGSIGLVIERK 104 (159)
T ss_pred CCceEEEEEcceEEEEEEcC-CcEE-EEEECCCCEE----EeCCCCCccc--ccCCCcEEEEEEeC
Confidence 47899999999998866543 4322 3569999887 34 2333332 33578888888654
No 55
>KOG2378|consensus
Probab=87.84 E-value=0.21 Score=43.01 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCcEeeeeccccCCCceeEEEEc-cceeEEEeCccccccccCC
Q psy8820 35 KGDLVGLIEMVTSTSRNTTVMAV-RDSELAKLPEGLCDHLPRS 76 (234)
Q Consensus 35 ~G~~fGe~~ll~~~~r~~tv~A~-~~~~l~~i~~~~f~~l~~~ 76 (234)
.||-||-+++..+.||.||+..- .+|.++.+++..|+.++.+
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~ 43 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHD 43 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHh
Confidence 49999999999999999997655 5699999999999988654
No 56
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=87.10 E-value=4.6 Score=29.46 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCc
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPE 67 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~ 67 (234)
.+.+++|++|+..+.....+|++.....+.+||.|=. -.+.++.......+++.++.++-
T Consensus 51 ~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i---p~g~~H~~~n~~~~~~~~l~~~~ 110 (146)
T smart00835 51 ATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV---PQGHPHFQVNSGDENLEFVAFNT 110 (146)
T ss_pred CCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE---CCCCEEEEEcCCCCCEEEEEEec
Confidence 5679999999999987766666777788999998621 12233333333345566665533
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=86.32 E-value=4.1 Score=30.92 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCcc
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEG 68 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~ 68 (234)
++++.+|.+++|.+.+...+ +|+. ....+++||+| ++ .+.|++- ++..+|..+.|.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-~g~~-~~v~L~eGd~f----llP~gvpHsP--~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-DGKR-RDVPIREGEMF----LLPPHVPHSP--QREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-CCce-eeEEECCCCEE----EeCCCCCcCC--ccCCCeEEEEEEeC
Confidence 46789999999999887764 4432 23468999887 44 2334433 33578888888544
No 58
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=84.48 E-value=13 Score=26.99 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred eeecCCCEEEEecCC-CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEe
Q psy8820 107 EHIPGGTCLVREEVV-EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGG 160 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~-~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~ 160 (234)
..+++|...-.. -. ....+++|++|...+.....++ ++.....+.+||.+-.
T Consensus 35 ~~i~pg~~~~~h-~H~~~~e~~~Vl~G~~~~~~~~~~~-~~~~~~~l~~GD~~~i 87 (146)
T smart00835 35 VNLEPGGMLPPH-YHPRATELLYVVRGEGRVGVVDPNG-NKVYDARLREGDVFVV 87 (146)
T ss_pred EEecCCcCcCCe-eCCCCCEEEEEEeCeEEEEEEeCCC-CeEEEEEecCCCEEEE
Confidence 577888875544 32 3568999999999998765433 4667778999997643
No 59
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=83.54 E-value=8.1 Score=23.78 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=30.9
Q ss_pred eeecCCCEEEEecCCCCc-eEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDN-KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~-~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|+..-.. -.... .+++|++|.+.+.. + + + ...+++||.+
T Consensus 3 ~~~~pG~~~~~h-~H~~~~e~~~vl~G~~~~~~-~--~--~--~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPH-RHPGEDEFFYVLSGEGTLTV-D--G--E--RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEE-EESSEEEEEEEEESEEEEEE-T--T--E--EEEEETTEEE
T ss_pred EEECCCCCCCCE-ECCCCCEEEEEEECCEEEEE-c--c--E--EeEccCCEEE
Confidence 367788866655 44555 89999999999983 2 2 1 4567888854
No 60
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=82.71 E-value=8.2 Score=23.75 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=29.6
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEE
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAK 64 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~ 64 (234)
.+++|++|++.+.. +|+ ...+++||.+ .+ .+.++......-+++.++.
T Consensus 21 e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~----~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 21 EFFYVLSGEGTLTV---DGE---RVELKPGDAI----YIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEEEEESEEEEEE---TTE---EEEEETTEEE----EEETTSEEEEEEESSSEEEEEE
T ss_pred EEEEEEECCEEEEE---ccE---EeEccCCEEE----EECCCCeEEEEECCCCCEEEEE
Confidence 79999999998873 243 3458999864 22 3344444444444555444
No 61
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=77.01 E-value=10 Score=28.82 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
+++.+++|++|++.+... |+. ..+++||++ .+ .+.|+.......+++.++.+
T Consensus 127 ~~~E~~~Vl~G~~~~~~~---~~~---~~l~~Gd~~----~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTIN---GQD---YHLVAGQSY----AINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred CCcEEEEEEEeEEEEEEC---CEE---EEecCCCEE----EEcCCCCeeeeCCCCCCeEEEEE
Confidence 457899999999987753 322 359999886 23 34566666555566666665
No 62
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=76.14 E-value=8.7 Score=27.91 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCCEEEEEEcceEEEEEEcCCCc----EEEEE--eecCCcEee
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGK----RKEEA--EYSKGDLVG 40 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~----~~~~~--~~~~G~~fG 40 (234)
.++.+++|++|+..+..-.+++. ..... .+++||+|=
T Consensus 53 ~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~ 95 (144)
T PF00190_consen 53 NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFV 95 (144)
T ss_dssp SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEE
T ss_pred eeeEEeeeeccceEEEEEecCCccccceeeeceeeeeccccee
Confidence 36789999999999766666541 22222 599999983
No 63
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=74.20 E-value=6.5 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeee
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGL 41 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe 41 (234)
..|.|+.|++|+..+... +.+ ..++|||+.|-
T Consensus 63 ~edEfv~ILeGE~~l~~d---~~e---~~lrpGD~~gF 94 (161)
T COG3837 63 AEDEFVYILEGEGTLRED---GGE---TRLRPGDSAGF 94 (161)
T ss_pred cCceEEEEEcCceEEEEC---Cee---EEecCCceeec
Confidence 357899999999976643 323 35899999873
No 64
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=73.36 E-value=8.1 Score=30.64 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=33.3
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC---------ceeEEEEccceeEEEeCccc
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS---------RNTTVMAVRDSELAKLPEGL 69 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~---------r~~tv~A~~~~~l~~i~~~~ 69 (234)
+.+.++++|.+.|.... .....++. -++.|.+.| +.+++.|.++++|..-..-.
T Consensus 50 E~clV~v~Gk~~vs~~g-----~~f~~iG~-----R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 50 ERCLVLVTGKATVSAHG-----STFGEIGT-----RMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVCSAPG 112 (270)
T ss_pred eEEEEEEeeeEEEeecc-----chHhhccc-----ccccccCCCCCeEEecCCceEEEEeecceEEEEEeCCC
Confidence 46788888888776532 11111211 233455543 77899999999888775544
No 65
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=71.52 E-value=8.4 Score=27.45 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+|+|++|+..+... +++. .+++||++
T Consensus 57 ~dE~~~Vl~G~g~v~~~---~~~~---~v~~gd~~ 85 (127)
T COG0662 57 RDEHWYVLEGTGKVTIG---GEEV---EVKAGDSV 85 (127)
T ss_pred cceEEEEEeeEEEEEEC---CEEE---EecCCCEE
Confidence 57899999999988875 3333 47888775
No 66
>KOG2378|consensus
Probab=70.68 E-value=3.8 Score=35.67 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCHHhHHHHHhcch
Q psy8820 154 PGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQDDCSTLIDADM 197 (234)
Q Consensus 154 ~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~p 197 (234)
.||-||.+++.+..|+.+++...+| |-.+.+++.+|..++.+..
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 4888999999999999999877655 9999999999999998754
No 67
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=70.66 E-value=31 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=34.4
Q ss_pred eeecCCCEE---------EEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCL---------VREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i---------~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|.+. +++ ......+|++++|...+...+.+| +.....+.||+++=
T Consensus 73 t~l~PG~~g~e~~mt~gH~H~-~~~~~EiyyvlsG~g~~~l~~~~G--~~~~~~v~pGd~v~ 131 (191)
T PRK04190 73 TRLYPGKVGDEYFMTKGHFHA-KADRAEIYYGLKGKGLMLLQDPEG--EARWIEMEPGTVVY 131 (191)
T ss_pred EEECCCcEecccccCCCeEcC-CCCCCEEEEEEeCEEEEEEecCCC--cEEEEEECCCCEEE
Confidence 566777743 233 334569999999999998766554 35566789998653
No 68
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=67.15 E-value=24 Score=25.51 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCC---ccEEEE--EECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGS---NDVHLF--TAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~---~~~~~~--~~~~g~~~G 159 (234)
..+++|...... -..+..+++|++|..++.....++. ...... .+++||+|-
T Consensus 39 ~~i~pg~~~~Ph-~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~ 95 (144)
T PF00190_consen 39 VLIEPGGLRAPH-YHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFV 95 (144)
T ss_dssp EEEETTEEEEEE-EESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEE
T ss_pred eehhcCCcccee-EeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeeccccee
Confidence 466888877766 3488999999999999876655431 012222 599999875
No 69
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=66.99 E-value=42 Score=23.71 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=41.4
Q ss_pred ccceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEE
Q psy8820 102 LDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVF 171 (234)
Q Consensus 102 l~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~ 171 (234)
+...+.++++|..--.-+-+.-+....+++|.++....+ +-......+|||+|=--...-.+|.+.
T Consensus 46 i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~----rLE~ha~~~pGDf~YiPpgVPHqp~N~ 111 (142)
T COG4101 46 ICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN----RLEEHAEVGPGDFFYIPPGVPHQPANL 111 (142)
T ss_pred eeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc----ceeeeEEecCCCeEEcCCCCCCccccc
Confidence 444557777776432222334556677889999998643 334556789999986655554555443
No 70
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=66.20 E-value=35 Score=24.28 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=31.7
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
..+++|++|++.+... .+|++ ..+.+||+|- +=.+.|+..... ++++++.+
T Consensus 56 ~E~~yVL~G~~~~~~i-~~g~~---~~L~aGD~i~---~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 56 LEAVYCIEGEGEVEDL-ATGEV---HPIRPGTMYA---LDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred EEEEEEEeCEEEEEEc-CCCEE---EEeCCCeEEE---ECCCCcEEEEcC--CCEEEEEE
Confidence 3689999999987621 12433 4599999873 223445554443 77776555
No 71
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.73 E-value=46 Score=23.69 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEE-EecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFIT-QKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~-~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|...-.- -.....+++|++|.+.+. ... + ....+.+||.+---+ +.+.. +++.+++.++.+
T Consensus 40 ~~l~pG~~~~~h-~h~~~E~~yVL~G~~~~~~i~~--g----~~~~L~aGD~i~~~~---~~~H~--~~N~e~~~~l~v 106 (125)
T PRK13290 40 TTIYAGTETHLH-YKNHLEAVYCIEGEGEVEDLAT--G----EVHPIRPGTMYALDK---HDRHY--LRAGEDMRLVCV 106 (125)
T ss_pred EEECCCCcccce-eCCCEEEEEEEeCEEEEEEcCC--C----EEEEeCCCeEEEECC---CCcEE--EEcCCCEEEEEE
Confidence 577888754332 222246999999999997 321 1 125678999765322 33322 333377776654
No 72
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=65.51 E-value=17 Score=31.15 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe-Ccccccc
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL-PEGLCDH 72 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i-~~~~f~~ 72 (234)
++.+|+|++|++++...+.+|+... ..+++||++ ++ .+.++...-.-.++++++.+ ....|..
T Consensus 266 ~~E~~yvl~G~~~~~v~d~~g~~~~-~~l~~GD~~----~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~ 330 (367)
T TIGR03404 266 ADEWQYFIQGQARMTVFAAGGNART-FDYQAGDVG----YVPRNMGHYVENTGDETLVFLEVFKADRFAD 330 (367)
T ss_pred CCeEEEEEEEEEEEEEEecCCcEEE-EEECCCCEE----EECCCCeEEEEECCCCCEEEEEEECCCCCce
Confidence 5789999999999988766664333 469999865 22 22333333233455666555 4444433
No 73
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=62.49 E-value=23 Score=25.06 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=36.4
Q ss_pred eeeecCCCEEEEecCCC-CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEee
Q psy8820 106 VEHIPGGTCLVREEVVE-DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGL 161 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~-~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~ 161 (234)
...+++|..+-.- -.+ .+...+|++|.+++... | + ...+.+||++-..
T Consensus 47 ~v~~~~G~~~~~H-~hp~~~~~~~Vl~G~~~~~~~---g-~---~~~l~~Gd~i~ip 95 (131)
T COG1917 47 LVTFEPGAVIPWH-THPLGEQTIYVLEGEGTVQLE---G-E---KKELKAGDVIIIP 95 (131)
T ss_pred EEEECCCcccccc-cCCCcceEEEEEecEEEEEec---C-C---ceEecCCCEEEEC
Confidence 3789999988877 665 67899999999999864 2 1 2357899987643
No 74
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=59.28 E-value=26 Score=20.58 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCEEEEEEcceEEEEEE
Q psy8820 5 SDSTYIVLTGRLRSVKT 21 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~ 21 (234)
.+.+|+|.+|.+.....
T Consensus 9 ~ngiYiV~~G~v~~i~p 25 (50)
T PF13128_consen 9 ENGIYIVKDGEVTFIEP 25 (50)
T ss_pred CCeEEEEECCeEEEcCC
Confidence 57899999999976644
No 75
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=58.23 E-value=77 Score=23.98 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=40.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|.......-.....+++|++|.+.+.... ....+.+||.+=.- .+.|..+.....+++.++.+
T Consensus 112 ~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-------~~~~l~~Gd~~~~~---~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 112 ETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-------QDYHLVAGQSYAIN---TGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EEccCCCCcccccccCCcEEEEEEEeEEEEEECC-------EEEEecCCCEEEEc---CCCCeeeeCCCCCCeEEEEE
Confidence 3556666322111234578999999999987532 23568999965432 24555444444556666655
No 76
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=57.34 E-value=46 Score=23.58 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=31.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|+-+--++-...+.+|+|++|...+...+ ....+++||++
T Consensus 41 ~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-------~~~~v~~gd~~ 85 (127)
T COG0662 41 ILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-------EEVEVKAGDSV 85 (127)
T ss_pred EEECCCcccCcccccCcceEEEEEeeEEEEEECC-------EEEEecCCCEE
Confidence 6778888764442444899999999999998752 12356777754
No 77
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=57.21 E-value=70 Score=23.93 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=36.0
Q ss_pred CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 123 DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 123 ~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
.+.++.+++|.+.+...+. | +.....+++||+|=--. +.| .+-.+..+|.++.|.+.
T Consensus 48 tdE~FyqleG~~~l~v~d~-g--~~~~v~L~eGd~flvP~---gvp--HsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEE-G--KREDVPIREGDIFLLPP---HVP--HSPQRPAGSIGLVIERK 104 (159)
T ss_pred CceEEEEEcceEEEEEEcC-C--cEEEEEECCCCEEEeCC---CCC--cccccCCCcEEEEEEeC
Confidence 6899999999999976543 2 23446789999875332 222 22334466666666544
No 78
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=55.15 E-value=85 Score=25.10 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=43.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE-eeeeeeC---------cceEEEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG-GLAVLTG---------EASVFTIQS 175 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G-~~~~l~~---------~~~~~~v~A 175 (234)
+..+++|+..-.. -...+.+.++++|.+.+...... ... .| -++.|.+ ..+..++.|
T Consensus 33 ~~~L~~Ges~~~~-~~~~E~clV~v~Gk~~vs~~g~~------f~~------iG~R~SvFe~~p~~~vYvp~g~~~~vtA 99 (270)
T COG3718 33 LLRLAAGESATEE-TGDRERCLVLVTGKATVSAHGST------FGE------IGTRMSVFERKPPDSVYVPAGSAFSVTA 99 (270)
T ss_pred EEEccCCCccccc-CCCceEEEEEEeeeEEEeeccch------Hhh------cccccccccCCCCCeEEecCCceEEEEe
Confidence 4788999998888 77788899999999999753321 000 11 1233333 234678889
Q ss_pred cCCeEEEEe
Q psy8820 176 RLPATIAWL 184 (234)
Q Consensus 176 ~~~~~~~~i 184 (234)
.+++++..-
T Consensus 100 ~t~~~vAvC 108 (270)
T COG3718 100 TTDLEVAVC 108 (270)
T ss_pred ecceEEEEE
Confidence 999766543
No 79
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=54.97 E-value=28 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=19.4
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
-.|.|++|.|+|.... .-..+.+|++|
T Consensus 35 ~vF~V~~G~v~Vti~~------~~f~v~~G~~F 61 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHE------TSFVVTKGGSF 61 (85)
T ss_dssp EEEEEEESEEEEEETT------EEEEEETT-EE
T ss_pred EEEEEEeCEEEEEEcC------cEEEEeCCCEE
Confidence 5789999999988742 22347888887
No 80
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=53.56 E-value=41 Score=26.33 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+|.+++|+.......++|+ ..+..+++||..
T Consensus 105 E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~i 136 (209)
T COG2140 105 EIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVI 136 (209)
T ss_pred cEEEEEeccEEEEEEcCCCc-EEEEEecCCcEE
Confidence 38999999988888887775 344567777754
No 81
>PLN00212 glutelin; Provisional
Probab=52.11 E-value=39 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+.+|++|+..+-.-..+|....-+.+.+||+|
T Consensus 369 A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gdvf 403 (493)
T PLN00212 369 AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLL 403 (493)
T ss_pred CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEE
Confidence 67889999999988887778887877899999998
No 82
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=51.90 E-value=34 Score=24.17 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG 40 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 40 (234)
++...+|++|++++... |+.. .+.+||++-
T Consensus 64 ~~~~~~Vl~G~~~~~~~---g~~~---~l~~Gd~i~ 93 (131)
T COG1917 64 GEQTIYVLEGEGTVQLE---GEKK---ELKAGDVII 93 (131)
T ss_pred cceEEEEEecEEEEEec---CCce---EecCCCEEE
Confidence 56889999999988765 4333 589999975
No 83
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=51.71 E-value=52 Score=25.08 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 121 VEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 121 ~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
.+.+.++++++|.+.+...+ +| +.....+++||+|=--+ +.|. +-++.++|.++.|.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-~g--~~~~v~L~eGd~fllP~---gvpH--sP~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-DG--KRRDVPIREGEMFLLPP---HVPH--SPQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-CC--ceeeEEECCCCEEEeCC---CCCc--CCccCCCeEEEEEEeC
Confidence 35688999999999998765 22 22345789999775332 2222 2233466666666443
No 84
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=51.53 E-value=51 Score=25.45 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=24.9
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
..+|+|++|+..+.....+|+ .....+.+||.+
T Consensus 98 ~EiyyvlsG~g~~~l~~~~G~-~~~~~v~pGd~v 130 (191)
T PRK04190 98 AEIYYGLKGKGLMLLQDPEGE-ARWIEMEPGTVV 130 (191)
T ss_pred CEEEEEEeCEEEEEEecCCCc-EEEEEECCCCEE
Confidence 489999999998887666553 334568999875
No 85
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=51.17 E-value=1.3e+02 Score=24.46 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=31.2
Q ss_pred ccceeeeecCCCEEEEecCCC-CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 102 LDIRVEHIPGGTCLVREEVVE-DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 102 l~~~~~~~~~g~~i~~~~g~~-~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
+...+..+++|.-.-...... .+.+.+|++|.+.+.... ....+.+||++=
T Consensus 58 f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g-------~~~~L~~Gd~~y 109 (260)
T TIGR03214 58 FVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEG-------ETHELREGGYAY 109 (260)
T ss_pred EEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECC-------EEEEECCCCEEE
Confidence 333446777765332111222 368999999999997431 134789999654
No 86
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=49.16 E-value=46 Score=23.43 Aligned_cols=29 Identities=28% Similarity=0.443 Sum_probs=20.8
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+.+.=|++|++.++. .+|+.. .+++||.|
T Consensus 64 ~E~chil~G~v~~T~--d~Ge~v---~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTP--DGGEPV---EVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEEC--CCCeEE---EEcCCCEE
Confidence 567778999997764 345433 58999987
No 87
>COG5458 Uncharacterized conserved protein [Function unknown]
Probab=48.61 E-value=24 Score=24.76 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=28.4
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST 48 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~ 48 (234)
.+.++|.|.+|.|+.-... .-+..+..|+-+|--.++.+.
T Consensus 54 ~GgSLYwViKG~VqcRQ~l-----l~Ir~ftd~egigRC~l~L~P 93 (144)
T COG5458 54 DGGSLYWVIKGQVQCRQKL-----LDIRTFTDGEGIGRCHLTLDP 93 (144)
T ss_pred cCCeEEEEEeceeehhhhc-----eeeeeccCCCccceeEEeeCC
Confidence 4679999999999765432 456677888878766665443
No 88
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=46.77 E-value=42 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.6
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+.+.+|++|++.+... |+.. .++|||++
T Consensus 176 dEi~YVLEGe~~l~Id---G~t~---~l~pGDvl 203 (233)
T PRK15457 176 DEIDMVLEGELHVRHE---GETM---IAKAGDVM 203 (233)
T ss_pred eEEEEEEEeEEEEEEC---CEEE---EeCCCcEE
Confidence 5788999999988873 5333 58999876
No 89
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=46.34 E-value=35 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=20.1
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
|.+.+|++|.+.+.. +|+.. ..++||++
T Consensus 96 DEi~~VlEG~L~i~~---~G~~~---~A~~GDvi 123 (152)
T PF06249_consen 96 DEIKYVLEGTLEISI---DGQTV---TAKPGDVI 123 (152)
T ss_dssp EEEEEEEEEEEEEEE---TTEEE---EEETT-EE
T ss_pred ceEEEEEEeEEEEEE---CCEEE---EEcCCcEE
Confidence 678899999998763 36433 48899886
No 90
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=40.38 E-value=1.9e+02 Score=24.59 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=49.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|..--.. -.....+|.|.+|.-...... . .+..++||+|.--+- . ..+..+.+++.++.++-
T Consensus 255 q~L~~G~~t~~~-r~T~s~Vf~VieG~G~s~ig~------~-~~~W~~gD~f~vPsW---~--~~~h~a~~da~Lf~~~D 321 (335)
T TIGR02272 255 QLLPKGFRTATY-RSTDATVFCVVEGRGQVRIGD------A-VFRFSPKDVFVVPSW---H--PVRFEASDDAVLFSFSD 321 (335)
T ss_pred hccCCCCCCCCc-cccccEEEEEEeCeEEEEECC------E-EEEecCCCEEEECCC---C--cEecccCCCeEEEEecC
Confidence 677777766665 677899999999998887621 2 357899999886432 1 12333456777887765
Q ss_pred HhHHHHH
Q psy8820 187 DDCSTLI 193 (234)
Q Consensus 187 ~~~~~l~ 193 (234)
.-+.+-|
T Consensus 322 ~Pll~~L 328 (335)
T TIGR02272 322 RPVQQKL 328 (335)
T ss_pred HHHHHHh
Confidence 5554433
No 91
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=40.18 E-value=1e+02 Score=27.61 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCc
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPE 67 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~ 67 (234)
++.+++|++|++.+... |+ ...+++||++ .+=.+.|+.......++++++.+-.
T Consensus 406 ~~E~~~VlsG~~~v~id---g~---~~~L~~GDSi---~ip~g~~H~~~N~g~~~l~iI~V~~ 459 (478)
T PRK15460 406 RAEHWVVVAGTAKVTID---GD---IKLLGENESI---YIPLGATHCLENPGKIPLDLIEVRS 459 (478)
T ss_pred CceEEEEEeeEEEEEEC---CE---EEEecCCCEE---EECCCCcEEEEcCCCCCEEEEEEEc
Confidence 45778899999988764 32 3469999885 2224556666666667777777643
No 92
>PRK11171 hypothetical protein; Provisional
Probab=40.08 E-value=2e+02 Score=23.33 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=40.3
Q ss_pred eeeecCCCEEEEecCC--CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVV--EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~--~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~ 183 (234)
...+++|...-.. .. ..+.+++|++|.+.+... + ....+.+||++=.- .+.+..+.-..-+++.++.
T Consensus 65 ~~~l~PG~~~~~~-~h~~~~eE~~~VlsG~l~v~~~---g----~~~~L~~GDsi~~p---~~~~H~~~N~g~~~a~~l~ 133 (266)
T PRK11171 65 LVEVEPGGGSDQP-EPDEGAETFLFVVEGEITLTLE---G----KTHALSEGGYAYLP---PGSDWTLRNAGAEDARFHW 133 (266)
T ss_pred EEEECCCCcCCCC-CCCCCceEEEEEEeCEEEEEEC---C----EEEEECCCCEEEEC---CCCCEEEEECCCCCEEEEE
Confidence 3677887754333 22 346889999999999753 2 13567899865322 2334333323345566665
Q ss_pred eC
Q psy8820 184 LP 185 (234)
Q Consensus 184 i~ 185 (234)
+.
T Consensus 134 v~ 135 (266)
T PRK11171 134 IR 135 (266)
T ss_pred EE
Confidence 53
No 93
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=39.79 E-value=1.1e+02 Score=20.07 Aligned_cols=62 Identities=24% Similarity=0.182 Sum_probs=40.7
Q ss_pred eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAW 183 (234)
Q Consensus 105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~ 183 (234)
.+..+++|..+-.- .-......+|++|.... .++ .+.+|+++=. ...+..+..+.++|.++.
T Consensus 27 ~L~r~~pG~~~p~H-~H~g~ee~~VLeG~~~d----~~~-------~~~~G~~~~~-----p~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 27 SLLRLEPGASLPRH-RHPGGEEILVLEGELSD----GDG-------RYGAGDWLRL-----PPGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEE-TTEEEEEE-EESS-EEEEEEECEEEE----TTC-------EEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEECCCCCcCcc-CCCCcEEEEEEEEEEEE----CCc-------cCCCCeEEEe-----CCCCccccCcCCCEEEEE
Confidence 34789999888876 66777888999999883 122 3477776543 233345666788888875
No 94
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=37.96 E-value=39 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=24.8
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
=+++.|.+++++.|...++++..+.....+
T Consensus 46 e~KeaL~~lle~~PGaa~qia~~v~eey~P 75 (83)
T PF10963_consen 46 ESKEALKELLEENPGAAMQIAGAVNEEYAP 75 (83)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhCC
Confidence 368899999999999999998887775544
No 95
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=37.68 E-value=1e+02 Score=24.25 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=42.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEc--CCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSR--LPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~--~~~~~~~ 183 (234)
+.++++|..+-.- ......+.+|++|.+. +.++ .+.+||+.=.- .....+.++. ++|.|+.
T Consensus 131 Ll~i~pG~~~p~H-~H~G~E~tlVLeG~f~----de~g-------~y~~Gd~i~~p-----~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 131 LLYIEAGQSIPQH-THKGFELTLVLHGAFS----DETG-------VYGVGDFEEAD-----GSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred EEEECCCCccCCC-cCCCcEEEEEEEEEEE----cCCC-------ccCCCeEEECC-----CCCCcCcccCCCCCeEEEE
Confidence 4888999888877 7777888899999963 2222 35777765321 2223445555 5588887
Q ss_pred eCHH
Q psy8820 184 LPQD 187 (234)
Q Consensus 184 i~~~ 187 (234)
+.-.
T Consensus 194 v~da 197 (215)
T TIGR02451 194 VLDA 197 (215)
T ss_pred EecC
Confidence 6543
No 96
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=36.95 E-value=1.7e+02 Score=21.61 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCcc
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEG 68 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~ 68 (234)
++++.||.-++|...+-... +|+... -.+++||+| |+-.. |++. .+ ..+|.-++|.|.
T Consensus 51 ne~eE~FyQ~kG~m~Lkv~e-~g~~kd-i~I~EGe~f----LLP~~vpHsP-~R-~~~tiGLViEr~ 109 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKVVE-DGKFKD-IPIREGEMF----LLPANVPHSP-QR-PADTIGLVIERK 109 (151)
T ss_dssp -SS-EEEEEEES-EEEEEEE-TTEEEE-EEE-TTEEE----EE-TT--EEE-EE--TT-EEEEEEE-
T ss_pred CCcceEEEEEeCcEEEEEEe-CCceEE-EEeCCCcEE----ecCCCCCCCC-cC-CCCcEEEEEEec
Confidence 46778999999998766554 465543 468999887 44333 3322 22 357888888654
No 97
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=36.28 E-value=1.2e+02 Score=23.80 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=25.2
Q ss_pred eEEEEEeCeEEEEEecCCCCccEEEEEECCCce
Q psy8820 125 KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDM 157 (234)
Q Consensus 125 ~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~ 157 (234)
.+|++++|..+......+| +......++||+
T Consensus 105 E~y~vi~G~g~m~v~~~~G--~~~v~~~~~Gd~ 135 (209)
T COG2140 105 EIYYVLKGEGRMLVQKPEG--EARVIAVRAGDV 135 (209)
T ss_pred cEEEEEeccEEEEEEcCCC--cEEEEEecCCcE
Confidence 4999999999999888776 466667788874
No 98
>KOG4600|consensus
Probab=34.80 E-value=1.8e+02 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=28.9
Q ss_pred eeecCCCEEEEe-c-----C-----CCCceEEEEEeCeEEEEEecCCC
Q psy8820 107 EHIPGGTCLVRE-E-----V-----VEDNKLIYVIAGSLFITQKSSDG 143 (234)
Q Consensus 107 ~~~~~g~~i~~~-~-----g-----~~~~~~y~I~~G~v~v~~~~~~g 143 (234)
+.+.+|++|++| + | -....+|-+.+|.|+.++.....
T Consensus 56 q~V~~G~IIvrQRgtkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~ 103 (144)
T KOG4600|consen 56 QSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFALEEGRVRFEKSKITP 103 (144)
T ss_pred eeeecccEEEEecccccCCCcccccCCcceEEEeeccEEEEEEccCCC
Confidence 688999999999 1 2 24567899999999999766544
No 99
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=32.99 E-value=1.6e+02 Score=26.18 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=34.3
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeC
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLP 66 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~ 66 (234)
+..++|++|++.+... |++ ..+++||++= +=.+.|+.......++++++.+.
T Consensus 398 ~E~~~Vl~G~~~v~~d---g~~---~~l~~GDsi~---ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 398 AEHWIVVSGTARVTIG---DET---LLLTENESTY---IPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred ceEEEEEeeEEEEEEC---CEE---EEecCCCEEE---ECCCCcEEEEcCCCCCEEEEEEE
Confidence 4566899999988764 433 3699999863 22445665555556777766663
No 100
>PF12852 Cupin_6: Cupin
Probab=32.07 E-value=1.3e+02 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.-.||+|.+|++.+.... .+.. -.+.+||++
T Consensus 35 ~~~fh~V~~G~~~l~~~~-~~~~---~~L~~GDiv 65 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPG-GGEP---IRLEAGDIV 65 (186)
T ss_pred ceEEEEEECCeEEEEEcC-CCCe---EEecCCCEE
Confidence 468999999999887542 1222 358888875
No 101
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=31.57 E-value=85 Score=21.46 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=27.7
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeE--EEeCccccccc
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSEL--AKLPEGLCDHL 73 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l--~~i~~~~f~~l 73 (234)
.+.+|.+|...+... |+. ..++|||+| ++ .+.++.......++... +.++.+.+..+
T Consensus 25 ~i~~v~~G~~~~~~~---~~~---~~l~~g~~~----li~p~~~H~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (136)
T PF02311_consen 25 EIIYVLSGEGTLHID---GQE---YPLKPGDLF----LIPPGQPHSYYPDSNEPWEYYWIYFSPDFLEEL 84 (136)
T ss_dssp EEEEEEEE-EEEEET---TEE---EEE-TT-EE----EE-TTS-EEEEE-TTSEEEEEEEEE---GGGGG
T ss_pred EEEEEeCCEEEEEEC---CEE---EEEECCEEE----EecCCccEEEecCCCCCEEEEEEEECHHHHHHH
Confidence 588999999987543 433 458999886 33 33444444444224443 33445445444
No 102
>KOG1758|consensus
Probab=29.74 E-value=2.3e+02 Score=20.95 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=24.5
Q ss_pred eEEEEEEcCCeEEEEeCHHhHHHHHhcch
Q psy8820 169 SVFTIQSRLPATIAWLPQDDCSTLIDADM 197 (234)
Q Consensus 169 ~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 197 (234)
+..++.|.+-..+-.|+.+.-+++++...
T Consensus 101 s~~~ila~EA~~ledid~~~a~q~Le~aq 129 (159)
T KOG1758|consen 101 SSLQILAEEAVKLEDIDPSEAQQLLEKAQ 129 (159)
T ss_pred CeEEEEehhccccccCCHHHHHHHHHHHH
Confidence 45778888888889999999999998876
No 103
>KOG2757|consensus
Probab=29.12 E-value=62 Score=27.63 Aligned_cols=49 Identities=29% Similarity=0.406 Sum_probs=31.7
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh------------hhhc------------cceeceeeeccCcccC
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF------------VRQF------------DFALDWVFLEGGQAVY 234 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~------------~~~~------------~~~l~~~~~~~~~~~~ 234 (234)
+..|..+|....+....+...+.+|+..- +.++ -.-|+++++++|+++|
T Consensus 187 ~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~DIGvfs~~FlN~~~L~PGEA~y 259 (411)
T KOG2757|consen 187 KLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGDIGVFSPFFLNYVRLNPGEAIY 259 (411)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCcceeeeHhhhhheecCCCceee
Confidence 45677777776666666666666655432 2222 2358999999999987
No 104
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=29.03 E-value=3e+02 Score=21.92 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=33.1
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeC
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLP 66 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~ 66 (234)
-.+.+-+|++|++.+... |+. ..+++|++. -+=-+.-.+.+-.+.+++++-.+.
T Consensus 82 ~ae~~lfVv~Ge~tv~~~---G~t---h~l~eggya---ylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 82 GAETFLFVVSGEITVKAE---GKT---HALREGGYA---YLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred cceEEEEEEeeeEEEEEc---CeE---EEeccCCeE---EeCCCCcceEeeccCCceEEEEEe
Confidence 367899999999988754 433 347777653 111233333333467777776663
No 105
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=28.20 E-value=1.2e+02 Score=22.51 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=19.6
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
|.+-+|++|++.|... |+.. ..+|||++
T Consensus 119 De~d~VlEGrL~V~~~---g~tv---~a~aGDvi 146 (176)
T COG4766 119 DEIDYVLEGRLHVRID---GRTV---IAGAGDVI 146 (176)
T ss_pred cceeEEEeeeEEEEEc---CCeE---ecCCCcEE
Confidence 4566899999998764 4333 36888865
No 106
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=27.85 E-value=2.1e+02 Score=19.84 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.7
Q ss_pred CCCCCEEEEEEcceE
Q psy8820 2 YDRSDSTYIVLTGRL 16 (234)
Q Consensus 2 Gd~~~~~yii~~G~v 16 (234)
||+++..|++.+|..
T Consensus 45 G~~Gd~a~vl~dg~~ 59 (106)
T cd02848 45 GDPGDTYKVLLDGKE 59 (106)
T ss_pred CCCCcEEEEEECCeE
Confidence 899999999999965
No 107
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=26.90 E-value=1.5e+02 Score=20.33 Aligned_cols=42 Identities=10% Similarity=-0.065 Sum_probs=24.3
Q ss_pred CCCCCEEEEEEcceEEEEEEc-CCCcEEEEEeecCCcEeeeec
Q psy8820 2 YDRSDSTYIVLTGRLRSVKTL-ESGKRKEEAEYSKGDLVGLIE 43 (234)
Q Consensus 2 Gd~~~~~yii~~G~v~v~~~~-~~g~~~~~~~~~~G~~fGe~~ 43 (234)
|++-.++-|+..|...+-... -++++.+++....|.+|=+++
T Consensus 58 ge~ietIrI~~pG~YeiNl~~Lld~~~iVval~EeG~Y~I~LP 100 (112)
T COG3364 58 GEPIETIRILRPGVYEINLESLLDRDEIVVALQEEGRYFIHLP 100 (112)
T ss_pred cCcceEEEEecCceEEEehhhhccCCceEEEEccCCeEEEECh
Confidence 455566667777766554432 234455666667777665554
No 108
>PLN00212 glutelin; Provisional
Probab=26.32 E-value=2.6e+02 Score=25.22 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEe
Q psy8820 108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGG 160 (234)
Q Consensus 108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~ 160 (234)
.+.+|.++..--.-.+..+.++++|..++-.-+.+| +...-..+.+||+|=-
T Consensus 354 ~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~GdvfVV 405 (493)
T PLN00212 354 NLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPGQLLII 405 (493)
T ss_pred EEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCCCEEEE
Confidence 334444433221345788999999999998766665 5555668999998753
No 109
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=26.14 E-value=4.3e+02 Score=23.51 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=37.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..++||..+-..........++|++|.+.+.... + ...+++||.+--- .+.+....-...++++++.+
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg----~---~~~l~~GDsi~ip---~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD----E---TLLLTENESTYIP---LGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEECC----E---EEEecCCCEEEEC---CCCcEEEEcCCCCCEEEEEE
Confidence 6778887543221222345668999999998532 1 2468899866422 13333333233455555444
No 110
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=25.78 E-value=4.3e+02 Score=23.72 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=39.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|...-.+........++|++|.+.+...+ ....+.+||.+--- .+.+....-...++++++.+
T Consensus 390 i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-------~~~~L~~GDSi~ip---~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 390 ITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-------DIKLLGENESIYIP---LGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred EEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-------EEEEecCCCEEEEC---CCCcEEEEcCCCCCEEEEEE
Confidence 6778877442231223347777999999998642 23568899865421 24444333333455555544
No 111
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=25.33 E-value=1.1e+02 Score=21.89 Aligned_cols=35 Identities=37% Similarity=0.508 Sum_probs=24.4
Q ss_pred EEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccc
Q psy8820 28 KEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCD 71 (234)
Q Consensus 28 ~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~ 71 (234)
..++.+.+|+.+| |..+-+|.+++.+..+|----+
T Consensus 9 ~~v~~v~~G~~Vg---------Yg~~~~a~~~~~iavv~iGYaD 43 (129)
T PF00842_consen 9 IQVREVPKGETVG---------YGRTYRAPRDTRIAVVPIGYAD 43 (129)
T ss_dssp EEEEEE-TT-EES---------GGGSEE-SSSEEEEEES--GGG
T ss_pred EEEEEeCCCCCCc---------CCCEEECCCCeEEEEEEEEeeC
Confidence 5678899999999 7777889999999999754433
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=24.99 E-value=2.2e+02 Score=23.12 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=43.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEe--eeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGG--LAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~--~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|+.+-.+ -+.-+...++++|.+.+... | ......-..-++|.. -++.-.......+.|.++++++..
T Consensus 32 l~L~~g~~~~~~-~~~~E~~vv~l~G~~~v~~~---g--~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~ 105 (261)
T PF04962_consen 32 LRLEAGESLEFE-LERRELGVVNLGGKATVTVD---G--EEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVC 105 (261)
T ss_dssp EEEECCHCCCCC-CCSEEEEEEEESSSEEEEET---T--EEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEE
T ss_pred EEecCCCEEecc-CCCcEEEEEEeCCEEEEEeC---C--ceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEE
Confidence 677777777666 66667788888999999862 2 112222233455532 123334555677888888888765
Q ss_pred C
Q psy8820 185 P 185 (234)
Q Consensus 185 ~ 185 (234)
+
T Consensus 106 s 106 (261)
T PF04962_consen 106 S 106 (261)
T ss_dssp E
T ss_pred c
Confidence 3
No 113
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=24.39 E-value=1.2e+02 Score=26.31 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.9
Q ss_pred eeceeeeccCcccC
Q psy8820 221 ALDWVFLEGGQAVY 234 (234)
Q Consensus 221 ~l~~~~~~~~~~~~ 234 (234)
.|+.+.++.||++|
T Consensus 235 lLN~v~l~pGeaif 248 (389)
T PRK15131 235 LLNVVKLNPGEAMF 248 (389)
T ss_pred heeEEEeCCCCEEE
Confidence 69999999999987
No 114
>PHA00672 hypothetical protein
Probab=24.32 E-value=1.3e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=27.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~ 139 (234)
..++|+|..+.-. --..+.+ +|.+|.+.|+..
T Consensus 51 ei~IPkGt~LtG~-~hkf~~~-ii~sG~itV~td 82 (152)
T PHA00672 51 TIRIPAGVALTGA-LIKVSTV-LIFSGHATVFIG 82 (152)
T ss_pred EEeccCceeeeee-eeEeeEE-EEecccEEEEeC
Confidence 3789999999977 6777788 999999999864
No 115
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=23.65 E-value=86 Score=26.03 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=25.5
Q ss_pred EEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 11 VLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 11 i~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
|..|.|..|..-++|+...+..+++||-.
T Consensus 259 VNAG~VhaYi~vPg~kTkYLaEL~aGDeV 287 (376)
T COG1465 259 VNAGAVHAYIRVPGGKTKYLAELKAGDEV 287 (376)
T ss_pred ecccceeEEEEcCCCceEEhhhhcCCCeE
Confidence 45688999999999999999999999964
No 116
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=23.14 E-value=2.3e+02 Score=20.74 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+.+++.|+..+....++|.+.. ++.||.+
T Consensus 64 aHEVl~vlrgqA~l~iGG~~G~el~---v~~GDvl 95 (163)
T COG4297 64 AHEVLGVLRGQAGLQIGGADGQELE---VGEGDVL 95 (163)
T ss_pred cceEEEEecceeEEEecCCCCceee---ecCCCEE
Confidence 5678899999999998888887665 6778876
No 117
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=23.05 E-value=3.1e+02 Score=20.17 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=32.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+.||..+--|.....+..+.|++|...+...+ ....+.+|+.+
T Consensus 68 i~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-------~~~~~~~g~sv 112 (151)
T PF01050_consen 68 ITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-------EEFTLKEGDSV 112 (151)
T ss_pred EEEcCCCccceeeecccccEEEEEeCeEEEEECC-------EEEEEcCCCEE
Confidence 6788888887774566778899999999998632 23456777753
No 118
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=21.03 E-value=3e+02 Score=21.13 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCEEEEEEcceEEEEEEcCCC---cEEEEEeecCCcEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESG---KRKEEAEYSKGDLV 39 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g---~~~~~~~~~~G~~f 39 (234)
.-..+|.+++|+.-+.-...+| .+..+-...+||..
T Consensus 82 ~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v 120 (182)
T PF06560_consen 82 SYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVV 120 (182)
T ss_dssp T--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEE
T ss_pred CCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEE
Confidence 3457999999999777777666 23445677888764
No 119
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=4.4e+02 Score=21.02 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=52.7
Q ss_pred eeecCCCEEEEecC-CCCceEEEEEeCeE---EEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820 107 EHIPGGTCLVREEV-VEDNKLIYVIAGSL---FITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA 182 (234)
Q Consensus 107 ~~~~~g~~i~~~~g-~~~~~~y~I~~G~v---~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~ 182 (234)
++|+-++..|.| | +..+..++.-.|.. ++...+-.++++..-..+.|..+|||-..-.+ .....-+=.+...+
T Consensus 38 ~~yphDs~sfTQ-GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~g--d~~y~LTw~egvaf 114 (262)
T COG3823 38 RTYPHDSTSFTQ-GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLG--DYFYQLTWKEGVAF 114 (262)
T ss_pred EeccCchhhhhc-ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeecc--ceEEEEEeccceeE
Confidence 899999999999 6 34445555555544 33333333334555555667789998433222 23444555677778
Q ss_pred EeCHHhHHHHHh
Q psy8820 183 WLPQDDCSTLID 194 (234)
Q Consensus 183 ~i~~~~~~~l~~ 194 (234)
.++.+.|+.+-.
T Consensus 115 ~~d~~t~~~lg~ 126 (262)
T COG3823 115 KYDADTLEELGR 126 (262)
T ss_pred EEChHHhhhhcc
Confidence 888888876543
No 120
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=20.34 E-value=3.4e+02 Score=19.47 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=33.5
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeecccc-CCCceeEEEEccceeEEEeCccccccccC
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVT-STSRNTTVMAVRDSELAKLPEGLCDHLPR 75 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~-~~~r~~tv~A~~~~~l~~i~~~~f~~l~~ 75 (234)
.+.+..+|.+.+... |++ ..+.||+++ ++. +.|+.....+-.....+.||+..+.....
T Consensus 57 ~l~~~~~G~~~~~~~---g~~---~~~~pg~~~----l~d~~~~~~~~~~~~~~~~~l~ip~~~l~~~~~ 116 (172)
T PF14525_consen 57 LLVLPLSGSARIEQG---GRE---VELAPGDVV----LLDPGQPYRLEFSAGCRQLSLRIPRALLERRLG 116 (172)
T ss_pred EEEEEccCCEEEEEC---CEE---EEEcCCeEE----EEcCCCCEEEEECCCccEEEEEECHHHhcCccC
Confidence 356677888876643 322 348888643 442 23444333333345567888777765544
No 121
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=20.07 E-value=2.7e+02 Score=18.21 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=26.0
Q ss_pred eEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC
Q psy8820 125 KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP 178 (234)
Q Consensus 125 ~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~ 178 (234)
...-|++|.++.+..+.+|........+.+|+ ..++ .-.....|...+|
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~----~~~i-~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQ----PPVI-EPQQWHRVEPLSD 75 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SESEEEEEETTE----EEEE--TT-EEEEEESST
T ss_pred EEEEEEeeEEEEEEECCCCCceeEEEEeCCCC----Ccee-CCCceEEEEECCC
Confidence 44669999999998877653222333334433 1122 1223455666665
Done!