Query psy8820
Match_columns 234
No_of_seqs 242 out of 2398
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 20:04:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shr_A CGMP-dependent protein 100.0 1.4E-34 4.9E-39 237.6 13.0 208 1-216 76-291 (299)
2 3tnp_B CAMP-dependent protein 100.0 1.1E-34 3.8E-39 248.6 11.0 211 1-216 182-406 (416)
3 2qcs_B CAMP-dependent protein 100.0 3.6E-33 1.2E-37 228.3 15.2 201 1-209 76-284 (291)
4 4din_B CAMP-dependent protein 100.0 1.5E-33 5.2E-38 239.2 12.5 203 1-211 167-377 (381)
5 3of1_A CAMP-dependent protein 100.0 5.5E-33 1.9E-37 221.5 9.2 188 1-201 44-239 (246)
6 1o7f_A CAMP-dependent RAP1 gua 100.0 4.9E-28 1.7E-32 210.3 14.0 198 1-205 79-457 (469)
7 4f7z_A RAP guanine nucleotide 99.9 2.2E-27 7.6E-32 223.0 15.1 189 1-196 79-448 (999)
8 3mdp_A Cyclic nucleotide-bindi 99.8 6.2E-20 2.1E-24 133.7 10.0 108 106-215 31-141 (142)
9 2pqq_A Putative transcriptiona 99.8 3.4E-19 1.2E-23 130.7 10.7 112 107-220 31-142 (149)
10 3gyd_A CNMP-BD protein, cyclic 99.8 3E-19 1E-23 136.7 9.1 118 106-225 64-181 (187)
11 2z69_A DNR protein; beta barre 99.8 3.1E-19 1.1E-23 131.7 8.7 112 106-219 37-149 (154)
12 3dn7_A Cyclic nucleotide bindi 99.8 2.1E-18 7.1E-23 132.4 11.0 107 106-214 32-139 (194)
13 2oz6_A Virulence factor regula 99.8 4.9E-18 1.7E-22 131.4 11.9 107 106-214 15-125 (207)
14 3d0s_A Transcriptional regulat 99.8 4.1E-18 1.4E-22 133.9 11.1 107 106-214 31-137 (227)
15 4ev0_A Transcription regulator 99.8 5.1E-18 1.7E-22 132.2 11.1 107 106-214 24-130 (216)
16 3ryp_A Catabolite gene activat 99.8 7.3E-18 2.5E-22 130.7 11.7 107 106-214 21-128 (210)
17 1o5l_A Transcriptional regulat 99.7 8.8E-18 3E-22 131.0 11.4 108 105-214 23-131 (213)
18 1zyb_A Transcription regulator 99.7 8.7E-18 3E-22 132.7 11.2 111 105-217 44-155 (232)
19 3fx3_A Cyclic nucleotide-bindi 99.7 8.4E-18 2.9E-22 132.9 10.9 108 106-215 36-143 (237)
20 3e97_A Transcriptional regulat 99.7 6.6E-18 2.3E-22 133.0 9.8 111 106-218 31-141 (231)
21 3kcc_A Catabolite gene activat 99.7 1.6E-17 5.5E-22 133.5 11.8 107 106-214 71-178 (260)
22 3dv8_A Transcriptional regulat 99.7 2E-17 7E-22 129.1 12.0 108 106-215 28-137 (220)
23 2gau_A Transcriptional regulat 99.7 7.9E-18 2.7E-22 132.7 9.6 106 107-214 36-141 (232)
24 3iwz_A CAP-like, catabolite ac 99.7 2.6E-17 9E-22 129.4 12.3 107 106-214 36-148 (230)
25 3ukn_A Novel protein similar t 99.7 1.6E-17 5.5E-22 129.4 10.3 106 107-219 101-208 (212)
26 3la7_A Global nitrogen regulat 99.7 4.3E-17 1.5E-21 129.6 12.5 107 106-214 45-153 (243)
27 2ptm_A Hyperpolarization-activ 99.7 1.7E-17 5.7E-22 127.9 9.4 101 107-213 97-197 (198)
28 3e6c_C CPRK, cyclic nucleotide 99.7 1.5E-16 5.3E-21 126.8 14.0 105 106-215 34-138 (250)
29 3dkw_A DNR protein; CRP-FNR, H 99.7 6.2E-18 2.1E-22 132.7 5.3 107 106-214 34-141 (227)
30 3idb_B CAMP-dependent protein 99.7 1E-17 3.5E-22 124.8 6.2 92 107-201 64-155 (161)
31 2bgc_A PRFA; bacterial infecti 99.7 1.8E-16 6.1E-21 125.6 12.7 105 107-214 21-128 (238)
32 1vp6_A CNBD, cyclic-nucleotide 99.7 2.7E-17 9.3E-22 119.1 7.2 99 106-213 36-134 (138)
33 3b02_A Transcriptional regulat 99.7 9.6E-17 3.3E-21 123.3 10.3 99 107-214 2-100 (195)
34 4f8a_A Potassium voltage-gated 99.7 2E-16 6.8E-21 117.3 10.4 95 106-207 52-148 (160)
35 3mdp_A Cyclic nucleotide-bindi 99.7 5E-17 1.7E-21 118.1 6.9 79 1-79 43-124 (142)
36 2fmy_A COOA, carbon monoxide o 99.7 5.2E-16 1.8E-20 121.3 13.2 99 106-214 29-127 (220)
37 1ft9_A Carbon monoxide oxidati 99.7 6.7E-16 2.3E-20 120.9 13.5 99 106-214 25-123 (222)
38 4ava_A Lysine acetyltransferas 99.7 1.5E-16 5E-21 132.2 10.0 104 107-214 39-142 (333)
39 3bpz_A Potassium/sodium hyperp 99.7 1.5E-16 5E-21 123.0 9.2 102 106-214 97-198 (202)
40 2qcs_B CAMP-dependent protein 99.7 3.9E-16 1.3E-20 127.0 11.3 122 106-234 64-192 (291)
41 3shr_A CGMP-dependent protein 99.7 6.1E-16 2.1E-20 126.4 11.5 121 107-234 65-192 (299)
42 3tnp_B CAMP-dependent protein 99.7 7.9E-17 2.7E-21 137.9 6.0 125 107-234 171-302 (416)
43 3of1_A CAMP-dependent protein 99.7 1.4E-16 4.9E-21 126.2 6.9 122 106-234 32-160 (246)
44 2pqq_A Putative transcriptiona 99.6 4.1E-16 1.4E-20 114.1 8.5 79 1-79 42-120 (149)
45 3ocp_A PRKG1 protein; serine/t 99.6 6.8E-16 2.3E-20 112.0 8.2 89 106-201 48-136 (139)
46 2z69_A DNR protein; beta barre 99.6 5.7E-16 1.9E-20 114.0 7.4 93 1-95 49-142 (154)
47 3gyd_A CNMP-BD protein, cyclic 99.6 7.6E-16 2.6E-20 117.7 7.8 79 1-79 76-154 (187)
48 3d0s_A Transcriptional regulat 99.6 2.2E-15 7.7E-20 118.1 10.3 79 1-79 43-121 (227)
49 3idb_B CAMP-dependent protein 99.6 4.9E-16 1.7E-20 115.6 5.9 77 1-78 75-151 (161)
50 4din_B CAMP-dependent protein 99.6 6.3E-16 2.2E-20 130.8 7.1 121 107-234 156-283 (381)
51 3pna_A CAMP-dependent protein 99.6 1.2E-15 4.1E-20 112.7 7.6 87 107-200 64-150 (154)
52 3dn7_A Cyclic nucleotide bindi 99.6 2E-15 6.8E-20 115.6 7.9 79 1-79 44-123 (194)
53 1wgp_A Probable cyclic nucleot 99.6 4.7E-16 1.6E-20 112.4 4.1 91 107-200 32-133 (137)
54 2oz6_A Virulence factor regula 99.6 3.6E-15 1.2E-19 115.2 8.9 79 1-79 27-109 (207)
55 2zcw_A TTHA1359, transcription 99.6 3E-15 1E-19 115.5 8.2 98 107-214 8-107 (202)
56 3ryp_A Catabolite gene activat 99.6 5.2E-15 1.8E-19 114.5 9.3 79 1-79 33-112 (210)
57 4ev0_A Transcription regulator 99.6 3E-15 1E-19 116.4 7.9 79 1-79 36-114 (216)
58 3e97_A Transcriptional regulat 99.6 3.7E-15 1.3E-19 117.2 8.5 79 1-79 43-121 (231)
59 1zyb_A Transcription regulator 99.6 5.4E-15 1.9E-19 116.5 9.4 79 1-79 57-136 (232)
60 3b02_A Transcriptional regulat 99.6 2.2E-14 7.4E-19 110.0 11.6 70 1-71 13-82 (195)
61 3fx3_A Cyclic nucleotide-bindi 99.6 5.4E-15 1.8E-19 116.7 8.0 79 1-79 48-126 (237)
62 1o5l_A Transcriptional regulat 99.6 7.1E-15 2.4E-19 114.4 8.5 79 1-79 36-115 (213)
63 3kcc_A Catabolite gene activat 99.6 9.3E-15 3.2E-19 117.3 9.3 79 1-79 83-162 (260)
64 3iwz_A CAP-like, catabolite ac 99.6 1.4E-14 4.8E-19 113.6 9.6 77 1-77 48-125 (230)
65 1o7f_A CAMP-dependent RAP1 gua 99.6 2.1E-15 7.2E-20 130.7 5.2 98 106-205 67-165 (469)
66 2ptm_A Hyperpolarization-activ 99.5 4E-15 1.4E-19 114.5 5.7 74 1-78 108-181 (198)
67 2gau_A Transcriptional regulat 99.5 5E-15 1.7E-19 116.5 5.8 79 1-79 47-125 (232)
68 3la7_A Global nitrogen regulat 99.5 3.4E-14 1.1E-18 112.8 9.7 79 1-79 57-137 (243)
69 3dkw_A DNR protein; CRP-FNR, H 99.5 4.7E-15 1.6E-19 116.2 4.4 79 1-79 46-125 (227)
70 3dv8_A Transcriptional regulat 99.5 2.1E-14 7.2E-19 111.9 7.9 79 1-79 40-120 (220)
71 2d93_A RAP guanine nucleotide 99.5 1E-14 3.4E-19 105.1 5.2 86 106-198 41-128 (134)
72 4ava_A Lysine acetyltransferas 99.5 2.1E-14 7.2E-19 119.1 7.7 77 1-79 50-126 (333)
73 3ocp_A PRKG1 protein; serine/t 99.5 1.5E-14 5.2E-19 104.8 5.5 73 1-78 60-132 (139)
74 3ukn_A Novel protein similar t 99.5 4.3E-14 1.5E-18 109.9 7.0 87 1-94 112-200 (212)
75 3e6c_C CPRK, cyclic nucleotide 99.5 1.2E-13 4.2E-18 109.9 9.3 76 1-79 46-121 (250)
76 4f8a_A Potassium voltage-gated 99.5 3.6E-14 1.2E-18 105.0 5.5 73 1-78 64-138 (160)
77 3pna_A CAMP-dependent protein 99.5 3.2E-14 1.1E-18 105.0 5.2 73 1-78 75-147 (154)
78 3bpz_A Potassium/sodium hyperp 99.5 3.6E-14 1.2E-18 109.5 5.5 74 1-79 109-182 (202)
79 1vp6_A CNBD, cyclic-nucleotide 99.5 3.1E-14 1.1E-18 102.8 4.1 86 1-95 48-133 (138)
80 1wgp_A Probable cyclic nucleot 99.5 7.8E-15 2.7E-19 106.0 0.8 77 1-78 43-130 (137)
81 2bgc_A PRFA; bacterial infecti 99.5 2.4E-13 8.3E-18 107.4 9.5 78 1-79 32-112 (238)
82 3beh_A MLL3241 protein; transm 99.4 7.4E-15 2.5E-19 123.1 0.0 98 107-213 254-351 (355)
83 2d93_A RAP guanine nucleotide 99.4 5.3E-14 1.8E-18 101.3 3.9 73 1-78 54-127 (134)
84 2fmy_A COOA, carbon monoxide o 99.4 6.8E-13 2.3E-17 103.4 9.0 71 1-79 41-111 (220)
85 2zcw_A TTHA1359, transcription 99.4 1.2E-12 4.1E-17 100.8 9.5 69 1-71 19-89 (202)
86 1ft9_A Carbon monoxide oxidati 99.4 1.1E-12 3.9E-17 102.4 8.2 71 1-79 37-107 (222)
87 4f7z_A RAP guanine nucleotide 99.4 2.1E-12 7.1E-17 121.6 10.1 93 107-201 68-161 (999)
88 3cf6_E RAP guanine nucleotide 99.3 2.5E-12 8.6E-17 116.2 6.8 89 107-201 59-148 (694)
89 3beh_A MLL3241 protein; transm 99.2 3.4E-12 1.2E-16 106.9 0.0 71 1-78 265-335 (355)
90 3cf6_E RAP guanine nucleotide 99.1 3.9E-11 1.3E-15 108.5 6.0 74 1-78 70-144 (694)
91 3rns_A Cupin 2 conserved barre 96.9 0.05 1.7E-06 42.0 14.7 152 4-184 56-223 (227)
92 3h7j_A Bacilysin biosynthesis 94.9 0.53 1.8E-05 36.5 12.1 129 5-159 54-195 (243)
93 2qnk_A 3-hydroxyanthranilate 3 92.7 3 0.0001 33.0 17.7 67 106-186 211-277 (286)
94 1sfn_A Conserved hypothetical 92.6 2.1 7.1E-05 33.2 11.5 154 5-182 68-235 (246)
95 1rc6_A Hypothetical protein YL 92.3 0.51 1.8E-05 37.0 7.7 137 5-159 81-229 (261)
96 2vqa_A SLL1358 protein, MNCA; 92.2 4.1 0.00014 33.2 16.8 51 107-159 239-289 (361)
97 1sq4_A GLXB, glyoxylate-induce 89.6 0.29 9.9E-06 39.0 3.8 136 5-159 90-241 (278)
98 1j58_A YVRK protein; cupin, de 88.5 9.3 0.00032 31.5 20.2 50 107-159 262-312 (385)
99 2ozj_A Cupin 2, conserved barr 87.6 2.6 8.9E-05 27.9 7.2 50 4-65 57-107 (114)
100 3rns_A Cupin 2 conserved barre 86.6 4.9 0.00017 30.6 9.1 65 107-184 42-106 (227)
101 1zvf_A 3-hydroxyanthranilate 3 86.6 5.3 0.00018 29.2 8.5 60 3-69 52-115 (176)
102 3d0j_A Uncharacterized protein 86.4 3 0.0001 29.3 6.9 61 3-68 48-110 (140)
103 1yfu_A 3-hydroxyanthranilate-3 86.2 3.9 0.00013 29.9 7.6 59 3-69 53-113 (174)
104 3fjs_A Uncharacterized protein 85.5 4 0.00014 27.2 7.2 50 4-64 55-104 (114)
105 3lwc_A Uncharacterized protein 84.5 1.6 5.3E-05 29.8 4.7 52 4-65 58-109 (119)
106 4axo_A EUTQ, ethanolamine util 80.9 2.4 8.2E-05 30.3 4.7 49 5-65 84-133 (151)
107 1dgw_A Canavalin; duplicated s 80.4 2.6 9E-05 30.8 5.0 33 5-39 61-93 (178)
108 3d82_A Cupin 2, conserved barr 80.3 5 0.00017 25.6 5.9 50 6-67 51-101 (102)
109 3es4_A Uncharacterized protein 79.7 2.3 7.9E-05 28.9 4.1 31 5-40 61-91 (116)
110 3fz3_A Prunin; TREE NUT allerg 79.7 3.4 0.00011 35.9 5.9 35 5-39 415-449 (531)
111 1yhf_A Hypothetical protein SP 79.4 9.7 0.00033 24.9 7.3 49 5-65 60-109 (115)
112 1dgw_A Canavalin; duplicated s 78.8 5.9 0.0002 28.9 6.4 49 107-159 46-94 (178)
113 2pfw_A Cupin 2, conserved barr 78.6 9.8 0.00033 25.0 7.1 49 5-65 54-103 (116)
114 3lwc_A Uncharacterized protein 77.9 12 0.00042 25.2 7.4 45 106-159 44-88 (119)
115 1fxz_A Glycinin G1; proglycini 77.9 4.3 0.00015 34.8 6.1 35 5-39 359-393 (476)
116 3c3v_A Arachin ARAH3 isoform; 77.9 4.3 0.00015 35.1 6.1 35 5-39 393-427 (510)
117 2e9q_A 11S globulin subunit be 77.4 4.3 0.00015 34.6 5.9 35 5-39 343-377 (459)
118 2i45_A Hypothetical protein; n 77.3 7.4 0.00025 25.3 6.1 53 6-69 49-102 (107)
119 2pyt_A Ethanolamine utilizatio 76.8 3.3 0.00011 28.8 4.3 31 4-40 74-104 (133)
120 3bcw_A Uncharacterized protein 76.5 3.2 0.00011 28.5 4.1 30 6-40 69-98 (123)
121 2d5f_A Glycinin A3B4 subunit; 76.4 4.7 0.00016 34.8 5.9 35 5-39 388-422 (493)
122 2vpv_A Protein MIF2, MIF2P; nu 76.2 6.5 0.00022 28.5 5.8 53 4-65 109-161 (166)
123 3fjs_A Uncharacterized protein 76.2 14 0.00049 24.4 10.3 63 107-182 41-103 (114)
124 1o5u_A Novel thermotoga mariti 75.3 3.6 0.00012 27.0 4.0 31 4-39 48-78 (101)
125 3kgl_A Cruciferin; 11S SEED gl 75.1 5.9 0.0002 33.9 6.1 35 5-39 344-378 (466)
126 3ksc_A LEGA class, prolegumin; 73.7 6.6 0.00023 33.8 6.1 35 5-39 379-413 (496)
127 3es1_A Cupin 2, conserved barr 71.8 5 0.00017 29.3 4.4 52 5-65 99-150 (172)
128 2bnm_A Epoxidase; oxidoreducta 71.4 11 0.00036 27.7 6.3 57 4-65 139-196 (198)
129 3qac_A 11S globulin SEED stora 70.6 8.1 0.00028 33.0 5.9 35 5-39 344-378 (465)
130 2opk_A Hypothetical protein; p 70.2 3.8 0.00013 27.3 3.2 33 4-40 52-84 (112)
131 2ozj_A Cupin 2, conserved barr 70.0 18 0.0006 23.6 6.6 65 107-184 43-107 (114)
132 2vqa_A SLL1358 protein, MNCA; 69.9 19 0.00064 29.2 8.0 51 107-159 57-107 (361)
133 2phl_A Phaseolin; plant SEED s 69.7 6.9 0.00024 32.7 5.3 56 5-65 260-321 (397)
134 3h8u_A Uncharacterized conserv 69.6 10 0.00036 25.3 5.5 52 6-65 61-112 (125)
135 4e2g_A Cupin 2 conserved barre 69.6 15 0.00051 24.5 6.3 49 5-65 61-111 (126)
136 3d0j_A Uncharacterized protein 69.0 21 0.00073 25.0 6.8 66 116-187 44-110 (140)
137 2vpv_A Protein MIF2, MIF2P; nu 68.8 30 0.001 25.0 7.9 51 101-159 87-139 (166)
138 3l2h_A Putative sugar phosphat 68.5 15 0.00051 25.9 6.3 30 4-39 67-96 (162)
139 1j58_A YVRK protein; cupin, de 68.2 16 0.00056 29.9 7.3 50 107-159 84-133 (385)
140 3jzv_A Uncharacterized protein 67.9 28 0.00097 24.9 7.7 45 107-159 58-102 (166)
141 2oa2_A BH2720 protein; 1017534 67.7 18 0.00063 25.1 6.6 58 5-65 64-121 (148)
142 1fxz_A Glycinin G1; proglycini 67.3 21 0.00073 30.5 7.9 51 107-158 343-393 (476)
143 1fi2_A Oxalate oxidase, germin 67.2 10 0.00035 28.1 5.4 35 5-39 93-129 (201)
144 3fz3_A Prunin; TREE NUT allerg 67.0 26 0.00088 30.4 8.3 52 107-159 399-450 (531)
145 1x82_A Glucose-6-phosphate iso 66.7 21 0.00073 26.1 7.0 55 6-65 97-152 (190)
146 3myx_A Uncharacterized protein 66.3 8.7 0.0003 29.6 4.8 30 4-39 64-93 (238)
147 3es1_A Cupin 2, conserved barr 66.0 14 0.00049 26.8 5.8 67 106-183 83-149 (172)
148 3c3v_A Arachin ARAH3 isoform; 65.3 23 0.00078 30.6 7.7 51 107-158 377-427 (510)
149 4e2g_A Cupin 2 conserved barre 65.3 23 0.00078 23.5 6.5 74 107-193 46-123 (126)
150 1v70_A Probable antibiotics sy 64.4 21 0.00072 22.4 6.0 50 6-65 50-100 (105)
151 1yhf_A Hypothetical protein SP 64.1 27 0.00091 22.7 10.0 65 107-184 45-109 (115)
152 2d5f_A Glycinin A3B4 subunit; 63.5 25 0.00085 30.3 7.6 52 107-159 372-423 (493)
153 2pfw_A Cupin 2, conserved barr 63.4 28 0.00095 22.6 9.5 65 107-184 39-103 (116)
154 2gu9_A Tetracenomycin polyketi 63.1 17 0.00057 23.4 5.4 52 5-65 44-95 (113)
155 3ibm_A Cupin 2, conserved barr 63.0 34 0.0011 24.4 7.3 52 5-65 76-128 (167)
156 1fi2_A Oxalate oxidase, germin 62.9 38 0.0013 24.9 7.9 52 107-159 77-130 (201)
157 3i7d_A Sugar phosphate isomera 62.1 18 0.00062 25.7 5.7 28 6-39 66-93 (163)
158 1x82_A Glucose-6-phosphate iso 59.9 23 0.00079 25.9 6.1 50 107-159 72-130 (190)
159 3kgz_A Cupin 2 conserved barre 59.6 42 0.0014 23.7 7.2 44 107-158 49-92 (156)
160 2cav_A Protein (canavalin); vi 59.5 11 0.00037 32.0 4.7 53 107-159 286-347 (445)
161 2pa7_A DTDP-6-deoxy-3,4-keto-h 59.3 42 0.0015 23.4 7.2 62 5-72 56-118 (141)
162 1o4t_A Putative oxalate decarb 59.1 17 0.00058 24.7 5.0 28 6-39 79-106 (133)
163 2fqp_A Hypothetical protein BP 59.1 15 0.00051 23.4 4.4 29 7-39 41-69 (97)
164 1sef_A Conserved hypothetical 58.9 18 0.00062 28.2 5.6 137 5-159 84-232 (274)
165 2e9q_A 11S globulin subunit be 58.8 38 0.0013 28.8 7.9 52 107-159 327-378 (459)
166 4b29_A Dimethylsulfoniopropion 58.8 12 0.00041 28.4 4.3 31 4-39 151-181 (217)
167 3kgz_A Cupin 2 conserved barre 58.6 25 0.00087 24.9 5.9 51 5-65 64-115 (156)
168 1juh_A Quercetin 2,3-dioxygena 57.8 13 0.00045 30.3 4.8 62 121-193 270-334 (350)
169 2o8q_A Hypothetical protein; c 57.7 40 0.0014 22.6 7.9 63 6-78 65-129 (134)
170 3ksc_A LEGA class, prolegumin; 57.4 49 0.0017 28.4 8.4 52 107-159 363-414 (496)
171 2ea7_A 7S globulin-1; beta bar 57.0 27 0.00093 29.5 6.7 49 107-159 66-114 (434)
172 1y9q_A Transcriptional regulat 56.4 24 0.00081 25.6 5.7 29 5-39 126-154 (192)
173 2cav_A Protein (canavalin); vi 56.4 26 0.00088 29.7 6.4 49 107-159 91-139 (445)
174 1uij_A Beta subunit of beta co 54.9 32 0.0011 28.8 6.8 49 107-159 54-102 (416)
175 1lr5_A Auxin binding protein 1 54.8 19 0.00065 25.4 4.8 35 5-39 61-98 (163)
176 3kgl_A Cruciferin; 11S SEED gl 54.6 54 0.0018 28.0 8.1 52 107-159 328-379 (466)
177 3ibm_A Cupin 2, conserved barr 54.0 56 0.0019 23.2 10.0 46 106-159 60-105 (167)
178 3i7d_A Sugar phosphate isomera 54.0 54 0.0019 23.1 7.1 48 104-159 45-94 (163)
179 3s7i_A Allergen ARA H 1, clone 53.9 34 0.0011 28.8 6.7 49 107-159 49-97 (418)
180 4e2q_A Ureidoglycine aminohydr 53.4 21 0.00071 28.0 5.0 135 4-158 89-235 (266)
181 4b29_A Dimethylsulfoniopropion 53.2 45 0.0016 25.2 6.6 45 107-158 137-181 (217)
182 2ea7_A 7S globulin-1; beta bar 53.1 19 0.00067 30.3 5.2 33 5-39 81-113 (434)
183 3s7i_A Allergen ARA H 1, clone 52.9 20 0.00069 30.1 5.2 33 5-39 64-96 (418)
184 3nw4_A Gentisate 1,2-dioxygena 52.9 84 0.0029 25.8 8.8 75 106-193 283-357 (368)
185 1yfu_A 3-hydroxyanthranilate-3 52.8 37 0.0013 24.7 5.9 36 122-160 54-89 (174)
186 3cew_A Uncharacterized cupin p 52.6 36 0.0012 22.5 5.7 57 7-73 50-109 (125)
187 2q1z_B Anti-sigma factor CHRR, 52.5 61 0.0021 23.8 7.3 62 106-184 129-192 (195)
188 3jzv_A Uncharacterized protein 52.5 31 0.0011 24.7 5.6 52 5-65 73-124 (166)
189 3qac_A 11S globulin SEED stora 52.4 66 0.0023 27.4 8.3 52 107-159 328-379 (465)
190 1vj2_A Novel manganese-contain 52.2 30 0.001 23.1 5.2 52 5-65 68-119 (126)
191 4i4a_A Similar to unknown prot 51.8 49 0.0017 21.8 6.4 50 5-64 54-104 (128)
192 1o4t_A Putative oxalate decarb 51.2 53 0.0018 22.1 7.8 45 107-159 62-107 (133)
193 2f4p_A Hypothetical protein TM 50.4 59 0.002 22.4 7.3 46 107-159 53-98 (147)
194 1uij_A Beta subunit of beta co 49.9 24 0.00083 29.6 5.2 57 5-66 270-339 (416)
195 2b8m_A Hypothetical protein MJ 49.4 15 0.00051 24.2 3.3 30 5-39 47-76 (117)
196 2qjv_A Uncharacterized IOLB-li 49.1 94 0.0032 24.3 8.7 73 106-185 33-109 (270)
197 1sfn_A Conserved hypothetical 48.8 65 0.0022 24.5 7.2 51 5-64 186-236 (246)
198 1lr5_A Auxin binding protein 1 48.7 45 0.0015 23.4 5.9 52 107-159 46-99 (163)
199 3h7j_A Bacilysin biosynthesis 47.6 42 0.0014 25.5 6.0 52 5-65 166-217 (243)
200 1pmi_A PMI, phosphomannose iso 47.1 20 0.0007 30.3 4.3 16 219-234 262-277 (440)
201 1v70_A Probable antibiotics sy 46.6 50 0.0017 20.5 8.9 45 107-159 33-78 (105)
202 3fgx_A Rbstp2171; structural g 46.3 18 0.00062 24.3 3.1 25 185-209 77-101 (114)
203 2f4p_A Hypothetical protein TM 46.1 41 0.0014 23.3 5.3 53 5-65 68-120 (147)
204 1vr3_A Acireductone dioxygenas 46.1 47 0.0016 24.6 5.7 45 5-54 104-149 (191)
205 1zvf_A 3-hydroxyanthranilate 3 46.0 60 0.002 23.6 6.0 61 122-187 53-114 (176)
206 2bnm_A Epoxidase; oxidoreducta 45.4 83 0.0028 22.6 7.5 70 107-184 122-196 (198)
207 3bu7_A Gentisate 1,2-dioxygena 44.1 1E+02 0.0035 25.6 8.1 76 106-192 298-374 (394)
208 2phl_A Phaseolin; plant SEED s 43.8 46 0.0016 27.7 5.9 47 107-157 57-103 (397)
209 3ht1_A REMF protein; cupin fol 43.1 46 0.0016 22.5 5.1 53 6-65 60-112 (145)
210 3l2h_A Putative sugar phosphat 42.0 85 0.0029 21.8 6.7 44 107-158 51-96 (162)
211 2xlg_A SLL1785 protein, CUCA; 41.8 19 0.00064 27.7 3.1 35 5-39 64-112 (239)
212 1juh_A Quercetin 2,3-dioxygena 41.7 41 0.0014 27.3 5.3 37 121-159 69-105 (350)
213 3bb6_A Uncharacterized protein 40.6 86 0.0029 21.5 7.0 54 7-65 41-96 (127)
214 1sef_A Conserved hypothetical 40.6 37 0.0013 26.4 4.7 52 5-65 203-255 (274)
215 3bu7_A Gentisate 1,2-dioxygena 40.1 39 0.0013 28.1 4.9 53 5-66 314-367 (394)
216 4h7l_A Uncharacterized protein 39.2 25 0.00085 25.2 3.1 48 5-66 66-116 (157)
217 2qnk_A 3-hydroxyanthranilate 3 39.1 1.2E+02 0.0041 23.9 7.2 58 122-187 50-107 (286)
218 4i4a_A Similar to unknown prot 37.7 85 0.0029 20.6 8.4 80 107-197 39-120 (128)
219 3o14_A Anti-ecfsigma factor, C 37.2 77 0.0026 23.9 5.9 63 106-185 47-109 (223)
220 1y3t_A Hypothetical protein YX 36.4 35 0.0012 27.1 4.1 29 5-39 239-267 (337)
221 2d40_A Z3393, putative gentisa 36.2 49 0.0017 26.9 4.9 50 5-65 288-337 (354)
222 1vr3_A Acireductone dioxygenas 35.9 78 0.0027 23.3 5.5 35 123-159 104-138 (191)
223 1rc6_A Hypothetical protein YL 35.0 1E+02 0.0034 23.6 6.4 46 107-159 64-110 (261)
224 1y3t_A Hypothetical protein YX 33.2 48 0.0016 26.3 4.4 29 5-39 67-95 (337)
225 2d40_A Z3393, putative gentisa 32.3 1.7E+02 0.0059 23.6 7.6 73 105-190 271-343 (354)
226 1y9q_A Transcriptional regulat 31.6 1.4E+02 0.0048 21.3 8.5 46 107-159 109-155 (192)
227 4e2q_A Ureidoglycine aminohydr 31.1 43 0.0015 26.2 3.6 70 104-185 72-141 (266)
228 3bb6_A Uncharacterized protein 30.8 1.3E+02 0.0044 20.6 7.5 49 125-178 41-90 (127)
229 3nw4_A Gentisate 1,2-dioxygena 30.6 65 0.0022 26.5 4.7 48 105-159 106-153 (368)
230 3lag_A Uncharacterized protein 28.7 14 0.00048 23.8 0.4 48 107-158 22-69 (98)
231 1zrr_A E-2/E-2' protein; nicke 28.3 43 0.0015 24.4 3.0 33 5-39 100-132 (179)
232 2oa2_A BH2720 protein; 1017534 28.2 1.4E+02 0.0049 20.3 7.7 51 107-158 48-98 (148)
233 1pve_A HHR23B, UV excision rep 28.2 45 0.0015 20.4 2.6 29 187-215 16-44 (72)
234 2f4m_B UV excision repair prot 28.2 68 0.0023 18.9 3.3 30 187-216 14-43 (61)
235 3ebr_A Uncharacterized RMLC-li 23.9 1.9E+02 0.0066 20.3 6.6 43 107-159 47-89 (159)
236 3hqx_A UPF0345 protein aciad03 23.7 1.2E+02 0.0041 20.2 4.2 25 13-37 23-48 (111)
237 1sq4_A GLXB, glyoxylate-induce 23.6 86 0.003 24.4 4.2 27 7-39 214-240 (278)
238 2arc_A ARAC, arabinose operon 23.2 1.2E+02 0.0039 20.7 4.5 27 7-39 40-66 (164)
239 3eo6_A Protein of unknown func 20.2 96 0.0033 20.5 3.1 25 13-37 22-47 (106)
No 1
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=100.00 E-value=1.4e-34 Score=237.61 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=173.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||+++.+|+|++|.|+++. +| ..+..+++|++|||.+++.+.||++|++|.++|+++.|+++.|..++...|.
T Consensus 76 ~G~~~~~~yiI~~G~v~v~~---~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~- 149 (299)
T 3shr_A 76 EGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL- 149 (299)
T ss_dssp TTCBCCCEEEEEESCEEEEE---TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHH-
T ss_pred CCCcCceEEEEEEEEEEEEE---CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH-
Confidence 79999999999999999965 34 6788999999999999999999999999999999999999999999888773
Q ss_pred HHHHHHHHHHHH---HhCCCCC--ccccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEec-CCCCccEEEEEE
Q psy8820 81 ELIHSSKREFME---QLGVKDF--SGLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS-SDGSNDVHLFTA 152 (234)
Q Consensus 81 ~l~~~~~~~l~~---~l~~~~~--~~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~-~~g~~~~~~~~~ 152 (234)
.........+.. ...+.+. ..+.. ..+.|++|++|+++ |+.++.+|+|++|.++++... .+| ++..+..+
T Consensus 150 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~~~~~~~~~g-~~~~~~~l 227 (299)
T 3shr_A 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQ-GARGDTFFIISKGKVNVTREDSPNE-DPVFLRTL 227 (299)
T ss_dssp HHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECT-TCEECEEEEEEESEEEEEECCSSSC-CCEEEEEE
T ss_pred HHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeC-CCCCCEEEEEEeeEEEEEEecCCCC-cceEEEEc
Confidence 111111011100 0011111 11222 33899999999999 999999999999999999876 344 78899999
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVR 216 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 216 (234)
++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+..++.+.+.+|+.....
T Consensus 228 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 228 GKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp ETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999888776643
No 2
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=100.00 E-value=1.1e-34 Score=248.64 Aligned_cols=211 Identities=15% Similarity=0.166 Sum_probs=162.1
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||+++++|+|++|.|+++. ..+|++..+..+++|++|||++++.+.||.+|++|.++|++|.|+++.|..++...|.
T Consensus 182 qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~- 259 (416)
T 3tnp_B 182 QGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNA- 259 (416)
T ss_dssp TTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchh-
Confidence 79999999999999999998 6788899999999999999999999999999999999999999999999988776652
Q ss_pred HHHHHHHHHHHHHh----CCCCC--ccccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCC------CCcc
Q psy8820 81 ELIHSSKREFMEQL----GVKDF--SGLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSD------GSND 146 (234)
Q Consensus 81 ~l~~~~~~~l~~~l----~~~~~--~~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~------g~~~ 146 (234)
...... ..+.+.+ .+... ..+.. ..+.|++|++|+++ |+.++++|+|.+|.++++....+ | ++
T Consensus 260 ~~~~~~-~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~e-Gd~~~~~yiI~sG~v~v~~~~~~~~~~~~g-~~ 336 (416)
T 3tnp_B 260 KKRKMY-ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQ-GDLADSFFIVESGEVKITMKRKGKSEVEEN-GA 336 (416)
T ss_dssp HHSSSS-SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECT-TSCCCEEEEEEEEEEEEECC-------------
T ss_pred HHHHHH-HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeC-CCcCCEEEEEEeCEEEEEEecCCcccccCC-ce
Confidence 100000 0000000 01110 01111 22899999999999 99999999999999999976554 4 67
Q ss_pred EEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820 147 VHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVR 216 (234)
Q Consensus 147 ~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 216 (234)
.++..+++|++||+.+++.+.|+.++|+|.++|+|+.|++++|.+++..+|.+..+.+..+.+++..+..
T Consensus 337 ~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~~ 406 (416)
T 3tnp_B 337 VEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFG 406 (416)
T ss_dssp CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-------------
T ss_pred eEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999988877777777766543
No 3
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=100.00 E-value=3.6e-33 Score=228.26 Aligned_cols=201 Identities=15% Similarity=0.211 Sum_probs=168.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||+++.+|+|++|.|+++. +| ..+..+++|++|||.+++.+.||.+|++|.++|+++.|+++.|..++...|.
T Consensus 76 ~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~- 149 (291)
T 2qcs_B 76 QGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL- 149 (291)
T ss_dssp TTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHH-
Confidence 69999999999999999987 45 5788999999999999999999999999999999999999999999888772
Q ss_pred HHHHHHHHHHHHHhC----CCCCc--cccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 81 ELIHSSKREFMEQLG----VKDFS--GLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 81 ~l~~~~~~~l~~~l~----~~~~~--~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
...... ..+...+. +.+.. .+.. ..+.+++|++|+++ |+.++.+|+|++|.++++....+|++...+..+
T Consensus 150 ~~~~~~-~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l 227 (291)
T 2qcs_B 150 RKRKMY-EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQ-GEPGDEFFIILEGSAAVLQRRSENEEFVEVGRL 227 (291)
T ss_dssp HHHHHH-HHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECT-TSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEE
T ss_pred HHHHHH-HHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeC-CccCCEEEEEEeCEEEEEEecCCCCccEEEEEe
Confidence 222222 33333222 11111 1212 23899999999999 999999999999999999877666567889999
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHH
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLK 209 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 209 (234)
++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.+..
T Consensus 228 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 228 GPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp CTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred CCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987666665544
No 4
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=239.18 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=170.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
|||+++++|+|++|.|+++. +| ..+..+++|++|||++++.+.||.+|++|.++|++|.|+++.|..++...|.
T Consensus 167 ~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~- 240 (381)
T 4din_B 167 QGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTL- 240 (381)
T ss_dssp TTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhH-
Confidence 69999999999999999996 34 4678899999999999999999999999999999999999999999888773
Q ss_pred HHHHHHHHHHHHHhC----CCCCc--cccce--eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 81 ELIHSSKREFMEQLG----VKDFS--GLDIR--VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 81 ~l~~~~~~~l~~~l~----~~~~~--~l~~~--~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
...+.. ..+.+.+. +.+.. .+... .+.|++|++|+++ |+.++++|+|.+|.++++....+|+++..+..+
T Consensus 241 ~~~~~~-~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~e-Gd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l 318 (381)
T 4din_B 241 RKRKMY-EEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQ-GEPGDDFYIITEGTASVLQRRSPNEEYVEVGRL 318 (381)
T ss_dssp HHHHHH-HHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCT-TSBCCEEEEEEESCEEEECCSSSSSCCCEEEEE
T ss_pred HHHHHH-HHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeC-CCcCCEEEEEEeCEEEEEEecCCCCceEEEEEe
Confidence 222222 33333332 12211 12222 2899999999999 999999999999999999877666567789999
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhh
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRM 211 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~ 211 (234)
++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.+....++.+...+
T Consensus 319 ~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 319 GPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp CTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred CCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877666555543
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-33 Score=221.46 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=156.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
+||+++++|+|++|.|+++. +|+ .+..+++|++|||.+++.+.||++|++|.++|+++.||++.|..++...|.
T Consensus 44 ~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~- 117 (246)
T 3of1_A 44 QGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSF- 117 (246)
T ss_dssp TTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS-
T ss_pred cCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH-
Confidence 69999999999999999985 343 368899999999999999999999999999999999999999999999883
Q ss_pred HHHHHHHHHHHHHhC----CCCCc--cccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 81 ELIHSSKREFMEQLG----VKDFS--GLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 81 ~l~~~~~~~l~~~l~----~~~~~--~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
...... ..+.+... +.+.. .+.. ..+.|++|++|+++ |+.++.+|+|.+|.++++.... ..+..+
T Consensus 118 ~~~~~~-~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~-g~~~~~~y~I~~G~v~v~~~~~-----~~~~~l 190 (246)
T 3of1_A 118 KKRLMY-DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIRE-GDQGENFYLIEYGAVDVSKKGQ-----GVINKL 190 (246)
T ss_dssp HHHHHS-HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECT-TSBCCEEEEEEECEEEEEETTT-----EEEEEE
T ss_pred HHHHHH-HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeC-CCcCCEEEEEEecEEEEEEcCC-----ceEEEc
Confidence 211111 22222221 11111 1222 23899999999999 9999999999999999987542 278899
Q ss_pred CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHH
Q psy8820 153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTL 201 (234)
Q Consensus 153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 201 (234)
.+|++||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|++..
T Consensus 191 ~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 191 KDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp ETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred CCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9999999999999999999999999999999999999999999998753
No 6
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.95 E-value=4.9e-28 Score=210.32 Aligned_cols=198 Identities=19% Similarity=0.193 Sum_probs=153.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCc--EEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGK--RKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~--~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
|||+++++|+|++|.|+++....+|+ +..+..+++|++|||.+ +.+.||++|++|.++|+++.|+++.|..++..+|
T Consensus 79 ~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p 157 (469)
T 1o7f_A 79 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYR 157 (469)
T ss_dssp TTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred CCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCH
Confidence 69999999999999999999888885 48899999999999999 9999999999999999999999999987755444
Q ss_pred h-----------------H----------------HHHHHHHHH---------------------------HHH------
Q psy8820 79 E-----------------Q----------------ELIHSSKRE---------------------------FME------ 92 (234)
Q Consensus 79 ~-----------------~----------------~l~~~~~~~---------------------------l~~------ 92 (234)
+ . ...+.+... ++.
T Consensus 158 ~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~ 237 (469)
T 1o7f_A 158 QYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQT 237 (469)
T ss_dssp GGTTTTSCTTTSCSCC------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCcCCCchHHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcC
Confidence 2 0 000000000 000
Q ss_pred --------------Hh----------------------------------------------------------------
Q psy8820 93 --------------QL---------------------------------------------------------------- 94 (234)
Q Consensus 93 --------------~l---------------------------------------------------------------- 94 (234)
.+
T Consensus 238 ~~t~SR~~~~~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (469)
T 1o7f_A 238 SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMR 317 (469)
T ss_dssp SCCSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHH
Confidence 00
Q ss_pred ----------------------C-------CCCC--ccccce--e-eeecCCCEEEEecCCCCceEEEEEeCeEEEEEec
Q psy8820 95 ----------------------G-------VKDF--SGLDIR--V-EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS 140 (234)
Q Consensus 95 ----------------------~-------~~~~--~~l~~~--~-~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~ 140 (234)
. +.+. ..+... . +.|++|++|+++ |+.++++|+|++|.++++...
T Consensus 318 ~~l~~~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~-G~~~~~~yiI~~G~v~v~~~~ 396 (469)
T 1o7f_A 318 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIYG 396 (469)
T ss_dssp HHTTSCTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECT-TSCCCEEEEEEESEEEEEETT
T ss_pred HHHcCCchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeC-CCcCCeEEEEEEeEEEEEEcC
Confidence 0 0000 001111 1 479999999999 999999999999999998732
Q ss_pred CCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcC-CeEEEEeCHHhHHHHHhcchHHHHHHHH
Q psy8820 141 SDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRL-PATIAWLPQDDCSTLIDADMNVTLKIAH 205 (234)
Q Consensus 141 ~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~-~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 205 (234)
..++..+.+|++||+.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|.+...+.+
T Consensus 397 -----~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 397 -----KGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp -----TEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred -----CeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 24888999999999999999999999999998 7999999999999999999998876644
No 7
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.95 E-value=2.2e-27 Score=223.04 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=146.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCC--CcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLES--GKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~--g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
|||++++||||++|+|.|+....+ +.+..+..+++|+.||| +++.+.||++||+|.++|++|+|++++|..+...+|
T Consensus 79 qGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~ 157 (999)
T 4f7z_A 79 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYR 157 (999)
T ss_dssp TTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhCh
Confidence 799999999999999999986443 45688899999999999 899999999999999999999999999987654322
Q ss_pred hHH------------------------------HHHH-------------------------------------------
Q psy8820 79 EQE------------------------------LIHS------------------------------------------- 85 (234)
Q Consensus 79 ~~~------------------------------l~~~------------------------------------------- 85 (234)
+.. ....
T Consensus 158 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~e~~d~~~~~~ 237 (999)
T 4f7z_A 158 QYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQT 237 (999)
T ss_dssp HHHTTTSCTTTSCSCCSSCC------CCSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETTEEEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCcccccCchhhcccccccccchhccccccccccccccccccccccccccccccccccC
Confidence 100 0000
Q ss_pred ---------------------------------------------------------------------H----------
Q psy8820 86 ---------------------------------------------------------------------S---------- 86 (234)
Q Consensus 86 ---------------------------------------------------------------------~---------- 86 (234)
.
T Consensus 238 ~~~~~~~~~~~~~q~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 317 (999)
T 4f7z_A 238 SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMR 317 (999)
T ss_dssp SSCCCHHHHHHHHHHHHHTTSEEETTCCSSCCSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhccccccccchhccccccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhh
Confidence 0
Q ss_pred --------------HHHHHHHhC-C---CCCc-----ccccee---eeecCCCEEEEecCCCCceEEEEEeCeEEEEEec
Q psy8820 87 --------------KREFMEQLG-V---KDFS-----GLDIRV---EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS 140 (234)
Q Consensus 87 --------------~~~l~~~l~-~---~~~~-----~l~~~~---~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~ 140 (234)
...+...+. + .... .+...+ ..+++|++|++| ||.++.+|||++|.|.|+..
T Consensus 318 ~~l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQ-GE~gds~YIIlsG~V~V~~~- 395 (999)
T 4f7z_A 318 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIY- 395 (999)
T ss_dssp HHHTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECT-TSBCCEEEEEEESEEEEEET-
T ss_pred hhhcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeC-CCcCCeEEEEEeeEEEEEEc-
Confidence 000000000 0 0000 011111 456889999999 99999999999999999863
Q ss_pred CCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCHHhHHHHHhcc
Q psy8820 141 SDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQDDCSTLIDAD 196 (234)
Q Consensus 141 ~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~ 196 (234)
.+..+..+++||+||+++++++.|+.+||+|.+| |+++.|++++|.+++.+-
T Consensus 396 ----~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 396 ----GKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ----TTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ----CCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 2456788999999999999999999999999885 999999999999998764
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.82 E-value=6.2e-20 Score=133.65 Aligned_cols=108 Identities=9% Similarity=0.216 Sum_probs=94.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE---EEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH---LFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA 182 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~---~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~ 182 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.+ +..++||++||+.+++.+.++.++++|.++|+++
T Consensus 31 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~ 108 (142)
T 3mdp_A 31 EKSFPTGSVIFKE-NSKADNLMLLLEGGVELFYSNGGA-GSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVV 108 (142)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESCEEEECC----------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEE
T ss_pred EEecCCCCEEEeC-CCCCCcEEEEEeCEEEEEEECCCC-CceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEE
Confidence 3699999999999 999999999999999999877766 6667 8999999999999999999999999999999999
Q ss_pred EeCHHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 183 WLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 183 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
.|++++|.+++.++|.+...+++.+.+++++++
T Consensus 109 ~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl 141 (142)
T 3mdp_A 109 DINGARLREMSENNQALGQVLMNNVAAAVLARL 141 (142)
T ss_dssp EEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988887654
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.80 E-value=3.4e-19 Score=130.66 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=102.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|++|+++ |++++++|+|++|.++++....+| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus 31 ~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~ 108 (149)
T 2pqq_A 31 VTLARGDTLFHE-GDPGDRLYVVTEGKVKLHRTSPDG-RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGH 108 (149)
T ss_dssp EEECTTCEEECT-TSEECEEEEEEESCEEEEEECTTS-SEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEG
T ss_pred EEeCCCCEEECC-CCCCCeEEEEEecEEEEEEECCCC-cEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeH
Confidence 699999999999 999999999999999999887776 788999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchhhhhccc
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDF 220 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
++|.+++.++|.+...+.+.+.+++.....++..
T Consensus 109 ~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 142 (149)
T 2pqq_A 109 GDLQPWLNVRPEVATALLRAVARRLRKTNDAMSD 142 (149)
T ss_dssp GGHHHHHHHCTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777665543
No 10
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=3e-19 Score=136.74 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=105.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.+++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus 64 ~~~~~~ge~i~~~-G~~~~~ly~I~~G~v~v~~~~~~g-~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~ 141 (187)
T 3gyd_A 64 CYAAPRDCQLLTE-GDPGDYLLLILTGEVNVIKDIPNK-GIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLS 141 (187)
T ss_dssp EEEECTTCEEECT-TSCCCEEEEEEEEEEEEEEEETTT-EEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEE
T ss_pred EEEeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-CeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEc
Confidence 3899999999999 999999999999999999988776 78899999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccceecee
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWV 225 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (234)
+++|.+++.++|.+...+.+.+.+.++++++.+...+..+
T Consensus 142 ~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l~~~ 181 (187)
T 3gyd_A 142 RDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRILPK 181 (187)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777777777666555444433
No 11
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.79 E-value=3.1e-19 Score=131.67 Aligned_cols=112 Identities=13% Similarity=0.237 Sum_probs=98.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.+|++||+.+++.+.+ +.++++|.++|+++.|
T Consensus 37 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i 114 (154)
T 2z69_A 37 LVNLDKGAYVFRQ-GEPAHAFYYLISGCVKIYRLTPEG-QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF 114 (154)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESCEEEECCCC------CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEE
T ss_pred EEEecCCCEEecC-CCccceEEEEEeCEEEEEEECCCC-CEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEE
Confidence 3799999999999 999999999999999999877666 678899999999999999999988 9999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhcc
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD 219 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
++++|.+++.++|.+...+++.+..++.....++.
T Consensus 115 ~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~~i~ 149 (154)
T 2z69_A 115 SNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIE 149 (154)
T ss_dssp EHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred CHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888776655543
No 12
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.77 E-value=2.1e-18 Score=132.37 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=98.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEee-eeeeCcceEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGL-AVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~-~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++..+.+| ++.++.++.||++||+. +++.+.|+.++++|.++|+++.|
T Consensus 32 ~~~~~~g~~l~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i 109 (194)
T 3dn7_A 32 LKKVRKKETLLKT-GEICRINYFVVKGCLRLFFIDEKG-IEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSI 109 (194)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEE
T ss_pred EEEEcCCCEEECC-CCeeeEEEEeecCeEEEEEECCCC-CEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEE
Confidence 4899999999999 999999999999999999988777 78899999999999987 67889999999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
|+++|.+++.++|.+...+.+.+.+++...
T Consensus 110 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 139 (194)
T 3dn7_A 110 TYTEQENLFERIPALERYFRLVYQKSFAAA 139 (194)
T ss_dssp EHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888777766554
No 13
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.76 E-value=4.9e-18 Score=131.42 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=96.8
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc----ceEEEEEEcCCeEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE----ASVFTIQSRLPATI 181 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~----~~~~~v~A~~~~~~ 181 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+. |+.++++|.++|++
T Consensus 15 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v 92 (207)
T 2oz6_A 15 RRRYTAKSTIIYA-GDRCETLFFIIKGSVTILIEDDDG-REMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEV 92 (207)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEE
T ss_pred eEEECCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEE
Confidence 3799999999999 999999999999999999888777 78899999999999999999888 89999999999999
Q ss_pred EEeCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 182 AWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 182 ~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+.||+++|.+++.++|.+...+++.+..++...
T Consensus 93 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~ 125 (207)
T 2oz6_A 93 AEISYAKFRELSQQDSEILYTLGSQMADRLRKT 125 (207)
T ss_dssp EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777666554
No 14
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.76 E-value=4.1e-18 Score=133.89 Aligned_cols=107 Identities=17% Similarity=0.275 Sum_probs=99.8
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.||
T Consensus 31 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~ 108 (227)
T 3d0s_A 31 PVDFPRGHTVFAE-GEPGDRLYIIISGKVKIGRRAPDG-RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMD 108 (227)
T ss_dssp EEEECTTCEEECT-TCCCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEE
T ss_pred EEEeCCCCEEEcC-CCcCCEEEEEEeeEEEEEEECCCC-cEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEe
Confidence 3899999999999 999999999999999999988777 78899999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++|.+++.++|.+...+.+.+.+++...
T Consensus 109 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 137 (227)
T 3d0s_A 109 RDALRSWIADRPEISEQLLRVLARRLRRT 137 (227)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887776655
No 15
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.75 E-value=5.1e-18 Score=132.22 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=99.7
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus 24 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~ 101 (216)
T 4ev0_A 24 RRLYPQGKPIFYQ-GDLGQALYLVASGKVRLFRTHLGG-QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALF 101 (216)
T ss_dssp EEEECTTCEEECT-TCBCCEEEEEEESCEEEEEECSSS-CEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEE
T ss_pred EEEeCCCCEEEeC-CCCCCEEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEc
Confidence 3799999999999 999999999999999999987777 78899999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++|.+++.++|.+...+.+.+..++...
T Consensus 102 ~~~~~~l~~~~p~~~~~~~~~l~~~~~~~ 130 (216)
T 4ev0_A 102 REDYLALIRRLPLVAHNLAALLARRLREA 130 (216)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887776665
No 16
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.75 E-value=7.3e-18 Score=130.73 Aligned_cols=107 Identities=17% Similarity=0.358 Sum_probs=98.9
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++..+.+| ++.++..+.||++||+.+++.+. ++.++++|.++|+++.|
T Consensus 21 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 98 (210)
T 3ryp_A 21 IHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 98 (210)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTC-CEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEE
T ss_pred EEEeCCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEE
Confidence 3799999999999 999999999999999999888777 78899999999999999999887 89999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++++|.+++.++|.+...+.+.+..++...
T Consensus 99 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 128 (210)
T 3ryp_A 99 SYKKFRQLIQVNPDILMRLSAQMARRLQVT 128 (210)
T ss_dssp EHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888777766554
No 17
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.75 E-value=8.8e-18 Score=130.96 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=99.5
Q ss_pred eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEE
Q psy8820 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAW 183 (234)
Q Consensus 105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~ 183 (234)
..+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+. ++.++++|.++|+++.
T Consensus 23 ~~~~~~~g~~i~~~-G~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~ 100 (213)
T 1o5l_A 23 KVIVFRKGEIVKHQ-DDPIEDVLILLEGTLKTEHVSENG-KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILS 100 (213)
T ss_dssp EEEEECTTCEEECT-TCBCCEEEEEEESCEEEEEECTTS-CEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEE
T ss_pred EEEEECCCCEEEcC-CCccceEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEE
Confidence 34899999999999 999999999999999999887777 78899999999999999998876 8899999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
|+++.|.+++.++|.+...+++.+..++...
T Consensus 101 i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~ 131 (213)
T 1o5l_A 101 IPKEVFLDLLMKDRELLLFFLKDVSEHFRVV 131 (213)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888776654
No 18
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.74 E-value=8.7e-18 Score=132.68 Aligned_cols=111 Identities=7% Similarity=0.023 Sum_probs=101.4
Q ss_pred eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEE
Q psy8820 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAW 183 (234)
Q Consensus 105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~ 183 (234)
..+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.+ +.++++|.++|+++.
T Consensus 44 ~~~~~~~ge~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~ 121 (232)
T 1zyb_A 44 HFIKHKAGETIIKS-GNPCTQLCFLLKGEISIVTNAKEN-IYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVC 121 (232)
T ss_dssp EEEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECGGG-SCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEE
T ss_pred EEEEECCCCEEECC-CCcccEEEEEEeeEEEEEEECCCC-CEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEE
Confidence 34799999999999 999999999999999999887776 788999999999999999999887 899999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ 217 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 217 (234)
|++++|.+++.++|.+...+.+.+.+++.....+
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~ 155 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR 155 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888877665433
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.74 E-value=8.4e-18 Score=132.94 Aligned_cols=108 Identities=14% Similarity=0.230 Sum_probs=100.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.|+++....+| ++.++..++||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus 36 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~ 113 (237)
T 3fx3_A 36 WRSYDRGETLFLQ-EEKAQAIHVVIDGWVKLFRMTPTG-SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIP 113 (237)
T ss_dssp EEEECTTCEEECT-TSCCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEE
T ss_pred EEEECCCCEEEcC-CCccceEEEEEeeEEEEEEECCCC-CEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEc
Confidence 3799999999999 999999999999999999988777 78899999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
+++|.+++.++|.+...+++.+.+++....
T Consensus 114 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 143 (237)
T 3fx3_A 114 SPVFVSLMRRDPEICISILATTFGHLHSLV 143 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887776653
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.74 E-value=6.6e-18 Score=133.04 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=100.7
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus 31 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~ 108 (231)
T 3e97_A 31 ERNFQPDELVVEQ-DAEGEALHLVTTGVVRVSRVSLGG-RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLH 108 (231)
T ss_dssp EEEECTTCBCCCT-TCTTTCEEEECSSEEEEEEECC---CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEEC
T ss_pred EEEECCCCEEEeC-CCCCCeEEEEEecEEEEEEECCCC-ceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEe
Confidence 3799999999999 999999999999999999988777 78899999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchhhhhc
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQF 218 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 218 (234)
++.|.+++.++|.+...+.+.+.+++.....++
T Consensus 109 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 141 (231)
T 3e97_A 109 REHFELILRRHPRVLWNLAEMLARRVTFLNDEL 141 (231)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888776654443
No 21
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.74 E-value=1.6e-17 Score=133.46 Aligned_cols=107 Identities=17% Similarity=0.358 Sum_probs=99.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++.++.||++||+.+++.+. ++.++++|.++|+++.|
T Consensus 71 ~~~~~~ge~i~~~-G~~~~~~y~I~~G~v~~~~~~~~G-~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i 148 (260)
T 3kcc_A 71 IHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 148 (260)
T ss_dssp EEEECTTCEEECT-TCBCCEEEEEEECEEEEEEECTTC-CEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEE
T ss_pred EEEECCCCEEECC-CCcCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEE
Confidence 4899999999999 999999999999999999887777 78899999999999999999888 89999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++.|.+++.++|.+...+++.+..++...
T Consensus 149 ~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~ 178 (260)
T 3kcc_A 149 SYKKFRQLIQVNPDILMRLSAQMARRLQVT 178 (260)
T ss_dssp EHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887776654
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.74 E-value=2e-17 Score=129.12 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=99.9
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCce--EEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDM--IGGLAVLTGEASVFTIQSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~--~G~~~~l~~~~~~~~v~A~~~~~~~~ 183 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..++||++ ||+.+++.+.|+.++++|.++|+++.
T Consensus 28 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 105 (220)
T 3dv8_A 28 TQHVKKGTIIHNG-NMDCTGLLLVKSGQLRTYILSDEG-REITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWI 105 (220)
T ss_dssp EEEECTTCEEEEG-GGCCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEE
T ss_pred eEEeCCCCEEECC-CCCcceEEEEEeceEEEEEECCCC-CEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEE
Confidence 3799999999999 999999999999999999988777 7889999999999 78999999999999999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
||+++|.+++.++|.+...+.+.+.+++....
T Consensus 106 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 137 (220)
T 3dv8_A 106 IPAEIYKGIMKDSAPVANYTNELMATRFSDVM 137 (220)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887776653
No 23
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=7.9e-18 Score=132.68 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=95.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.|++
T Consensus 36 ~~~~~g~~i~~~-g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~ 113 (232)
T 2gau_A 36 FPCKKASTVFSE-GDIPNNLFYLYEGKIKILREGVYG-RFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPV 113 (232)
T ss_dssp EEECTTCEEECT-TCCCCEEEEEEESCEEEEC------CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEH
T ss_pred EEECCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEH
Confidence 699999999999 999999999999999999877766 788899999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++|.+++.++|.+...+++.+.+++...
T Consensus 114 ~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 141 (232)
T 2gau_A 114 EAIEALLKGNTSFCRYFLKALAKELGYA 141 (232)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887776655
No 24
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.73 E-value=2.6e-17 Score=129.36 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=98.4
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+. |+.++++|.++|+++.|
T Consensus 36 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 113 (230)
T 3iwz_A 36 RRRYPTRTDVFRP-GDPAGTLYYVISGSVSIIAEEDDD-RELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEI 113 (230)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEE
T ss_pred EEEeCCCCEEECC-CCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEE
Confidence 4799999999999 999999999999999999988777 78899999999999999998775 78899999999999999
Q ss_pred CHHhHHHHHhcc-----hHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDAD-----MNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~-----p~~~~~~~~~~~~~~~~~ 214 (234)
++++|.+++.++ |.+...+++.+.+++...
T Consensus 114 ~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~ 148 (230)
T 3iwz_A 114 SYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDT 148 (230)
T ss_dssp EHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999 999988888887776654
No 25
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.73 E-value=1.6e-17 Score=129.37 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=97.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc--ceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE--ASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~--~~~~~v~A~~~~~~~~i 184 (234)
+.|++|++|+++ |+.++++|+|.+|.|+++. + ..++..+++|++||+.+++.+. ++.++++|.++|+++.|
T Consensus 101 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~---~---~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i 173 (212)
T 3ukn_A 101 SFCAPGEFLIRQ-GDALQAIYFVCSGSMEVLK---D---NTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYI 173 (212)
T ss_dssp EEECTTCEEECT-TSBCCEEEEEEECCEEEES---S---SCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEE
T ss_pred EEeCCCCEEEEC-CCcccEEEEEEecEEEEEE---C---CeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEE
Confidence 799999999999 9999999999999999985 2 2678899999999999999988 99999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhcc
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD 219 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
++++|.+++.++|.+...+.+.+.+++...+++..
T Consensus 174 ~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~ 208 (212)
T 3ukn_A 174 SLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGS 208 (212)
T ss_dssp EHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC--
T ss_pred eHHHHHHHHHHChHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999988877654
No 26
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.72 E-value=4.3e-17 Score=129.60 Aligned_cols=107 Identities=12% Similarity=0.256 Sum_probs=97.9
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEcCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~~~~~~~~ 183 (234)
.+.|++|++|+.+ |++++++|+|++|.++++....+| ++.++.++.||++||+.+++.+.|. .++++|.++|+++.
T Consensus 45 ~~~~~~ge~i~~~-G~~~~~ly~v~~G~v~~~~~~~~G-~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~ 122 (243)
T 3la7_A 45 VETFERNKTIFFP-GDPAERVYFLLKGAVKLSRVYEAG-EEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLS 122 (243)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESCEEEEEECTTC-CEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEE
T ss_pred eEEECCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEE
Confidence 4799999999999 999999999999999999988777 7889999999999999999988874 48999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
|+++.|.+++.++|.+...+++.+..++...
T Consensus 123 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~ 153 (243)
T 3la7_A 123 APIEQVEQALKENPELSMLMLRGLSSRILQT 153 (243)
T ss_dssp EEHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888777766554
No 27
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.72 E-value=1.7e-17 Score=127.94 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=92.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++++|+|.+|.|+++. .+| + ++..+++|++||+.+++.+.++.++++|.++|+++.|++
T Consensus 97 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~~~~--~~g-~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~ 170 (198)
T 2ptm_A 97 EVFQPADYVIQE-GTFGDRMFFIQQGIVDIIM--SDG-V--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSV 170 (198)
T ss_dssp EEECTTCEEECT-TSCCSEEEEEEECCEEEEC--TTS-C--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEH
T ss_pred eeeCCCCEEEEC-CCcCcEEEEEEeCEEEEEe--cCC-e--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeH
Confidence 899999999999 9999999999999999986 344 2 788999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
++|.++++++|.+...+.+.+..|+..
T Consensus 171 ~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (198)
T 2ptm_A 171 QHFNQVLDEFPAMRKTMEEIAVRRLTR 197 (198)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHHhc
Confidence 999999999999998888888877653
No 28
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.71 E-value=1.5e-16 Score=126.80 Aligned_cols=105 Identities=15% Similarity=0.333 Sum_probs=96.9
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|.+|.++++....+| ++.++..+.||++||+ ++.+. +.++++|.++|+++.|+
T Consensus 34 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~ 108 (250)
T 3e6c_C 34 IRDFAKGSAVIMP-GEEITSMIFLVEGKIKLDIIFEDG-SEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFS 108 (250)
T ss_dssp EEEECTTCEEECT-TCCCCSEEEEEESCEEEEEECTTS-CEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEEC
T ss_pred EEEECCCCEEECC-CCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEc
Confidence 3899999999999 999999999999999999988777 7889999999999999 77777 99999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
++.|.+++.++|.+...+.+.+.+++....
T Consensus 109 ~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~ 138 (250)
T 3e6c_C 109 EKSLRTVFRTDEDMIFEIFKNYLTKVAYYA 138 (250)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887776653
No 29
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.71 E-value=6.2e-18 Score=132.72 Aligned_cols=107 Identities=13% Similarity=0.222 Sum_probs=98.8
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..++||++||+.+++.+.| +.++++|.++|+++.|
T Consensus 34 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 111 (227)
T 3dkw_A 34 LVNLDKGAYVFRQ-GEPAHAFYYLISGCVKIYRLTPEG-QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF 111 (227)
T ss_dssp EEECCTTEEEECT-TSBCCEEEEEEESCEECCBCCGGG-CCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEE
T ss_pred EEEECCCCEEEcC-CCccceEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEE
Confidence 3799999999999 999999999999999999877776 678889999999999999999999 8999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++++|.+++.++|.+...+.+.+..++...
T Consensus 112 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 141 (227)
T 3dkw_A 112 SNKAYLRQLQDNTPLALALLAKLSTRLHQR 141 (227)
T ss_dssp ESHHHHHHHSSCTHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887776654
No 30
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.71 E-value=1e-17 Score=124.84 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=86.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |++++++|+|++|.++++. ..+| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus 64 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~-~~~g-~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 140 (161)
T 3idb_B 64 KLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDG-VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDR 140 (161)
T ss_dssp EEECTTCEEECT-TSCCCEEEEEEESEEEEEE-EETT-EEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEH
T ss_pred eEeCCCCEEEeC-CCCCcEEEEEEeCEEEEEE-cCCC-CeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeH
Confidence 899999999999 9999999999999999998 5555 788999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHH
Q psy8820 187 DDCSTLIDADMNVTL 201 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~ 201 (234)
++|.+++.++|.+..
T Consensus 141 ~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 141 VTFRRIIVKNNAKKR 155 (161)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCHHHHH
Confidence 999999999998753
No 31
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.70 E-value=1.8e-16 Score=125.57 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=94.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEc-CCeEEEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSR-LPATIAW 183 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~-~~~~~~~ 183 (234)
+.|++|++|+++ |++++++|+|++|.|+++....+| ++.++..+ ||++||+.+++.+.++ .+++.|. ++|+++.
T Consensus 21 ~~~~~ge~i~~~-G~~~~~~y~I~~G~v~~~~~~~~G-~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~ 97 (238)
T 2bgc_A 21 KQFHKKELIFNQ-WDPQEYCIFLYDGITKLTSISENG-TIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYV 97 (238)
T ss_dssp EEEETTCEEECT-TCCCCEEEEEEESEEEEEEECTTS-CEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEE
T ss_pred EEECCCCEEEeC-CCCCceEEEEEecEEEEEEECCCC-CEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEE
Confidence 699999999999 999999999999999999988777 77888888 9999999999988864 6777777 5999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
|+++.|.+++.++|.+...+++.+.+++...
T Consensus 98 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 128 (238)
T 2bgc_A 98 IKINELKELLSKNLTHFFYVFQTLQKQVSYS 128 (238)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776654
No 32
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.70 E-value=2.7e-17 Score=119.10 Aligned_cols=99 Identities=18% Similarity=0.361 Sum_probs=90.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.++++... ...+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus 36 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~--------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~ 106 (138)
T 1vp6_A 36 ARTVPAGAVICRI-GEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLH 106 (138)
T ss_dssp EEEECTTCEEECT-TSCCCEEEEEEESCEEECSSS--------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEE
T ss_pred EEEeCCCCEEEeC-CCCcceEEEEEeeEEEEEeCC--------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEEC
Confidence 3799999999999 999999999999999998543 1478999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
+++|.+++.++|.+...+.+.+.+|+..
T Consensus 107 ~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 107 SADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999888887654
No 33
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.69 E-value=9.6e-17 Score=123.29 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=90.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+ +++.+.|+.++++|.++|+++.||+
T Consensus 2 ~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~ 78 (195)
T 3b02_A 2 KRFARKETIYLR-GEEARTLYRLEEGLVRVVELLPDG-RLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEP 78 (195)
T ss_dssp EEECTTCEEECT-TSBCCCEEEEEESCEEEEEECTTS-CEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECG
T ss_pred eEcCCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcH
Confidence 579999999999 999999999999999999887776 7889999999999999 9999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+.|. |.+...+++.+..++...
T Consensus 79 ~~~~------p~~~~~~~~~l~~~l~~~ 100 (195)
T 3b02_A 79 RAMD------HEALHRVARNLARQMRRV 100 (195)
T ss_dssp GGCC------HHHHHHHHHHHHHHHHHH
T ss_pred HHcC------HHHHHHHHHHHHHHHHHH
Confidence 9998 888888888777766654
No 34
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.68 E-value=2e-16 Score=117.33 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=87.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeC--cceEEEEEEcCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTG--EASVFTIQSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~--~~~~~~v~A~~~~~~~~ 183 (234)
.+.+++|++|+++ |++++++|+|++|.++++. ++.++..+.||++||+.+++.+ .++.++++|.++|+++.
T Consensus 52 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~------~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~ 124 (160)
T 4f8a_A 52 TVHCAPGDLIYHA-GESVDSLCFVVSGSLEVIQ------DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHV 124 (160)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESEEEEEE------TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEE
T ss_pred eeeeCCCCEEEeC-CCCccEEEEEEeeEEEEEE------CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEE
Confidence 3899999999999 9999999999999999986 2468889999999999999988 68999999999999999
Q ss_pred eCHHhHHHHHhcchHHHHHHHHHH
Q psy8820 184 LPQDDCSTLIDADMNVTLKIAHSV 207 (234)
Q Consensus 184 i~~~~~~~l~~~~p~~~~~~~~~~ 207 (234)
|++++|.++++++|.+...+.+.+
T Consensus 125 i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 125 IKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987776665
No 35
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.68 E-value=5e-17 Score=118.12 Aligned_cols=79 Identities=8% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEE---EEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKE---EAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP 77 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~---~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~ 77 (234)
+||+++++|+|++|.|+++...++|++.. +..+++|++|||.+++.+.|+.+|++|.++|+++.||++.|..++..+
T Consensus 43 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 122 (142)
T 3mdp_A 43 ENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENN 122 (142)
T ss_dssp TTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred CCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence 69999999999999999999888898888 999999999999999999999999999999999999999999999999
Q ss_pred ch
Q psy8820 78 SE 79 (234)
Q Consensus 78 p~ 79 (234)
|+
T Consensus 123 p~ 124 (142)
T 3mdp_A 123 QA 124 (142)
T ss_dssp HH
T ss_pred hH
Confidence 83
No 36
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.68 E-value=5.2e-16 Score=121.26 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=90.2
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|++|.++++ ...+| ++.++..+.||++||+ |+.++++|.++|+++.||
T Consensus 29 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~-~~~~G-~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~ 98 (220)
T 2fmy_A 29 EQRYSKKAILYTP-NTERNLVFLVKSGRVRVY-LAYED-KEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTD 98 (220)
T ss_dssp EEEECTTCEEECT-TCSSCEEEEEEESEEEEE-EECSS-CEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEE
T ss_pred eeEeCCCCEEECC-CCCCCeEEEEEecEEEEE-ECCCC-CEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEe
Confidence 3899999999999 999999999999999995 55555 7889999999999998 788999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++|.+++.++|.+...+.+.+.+++...
T Consensus 99 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 127 (220)
T 2fmy_A 99 IRNFQNIVVEFPAFSLNMVKVLGDLLKNS 127 (220)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877776654
No 37
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.68 E-value=6.7e-16 Score=120.87 Aligned_cols=99 Identities=11% Similarity=0.157 Sum_probs=90.4
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|.+|.++++ ...+| ++.++..+.||++|| .++.++++|.++|+++.|+
T Consensus 25 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~-~~~~G-~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~ 94 (222)
T 1ft9_A 25 SKIHAKGSLVCTG-EGDENGVFVVVDGRLRVY-LVGEE-REISLFYLTSGDMFC-------MHSGCLVEATERTEVRFAD 94 (222)
T ss_dssp EEEECTTCEEECT-TCCCCCEEEEEESEEEEE-EEETT-EEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEEC
T ss_pred EEEECCCCEEECC-CCCCCeEEEEEecEEEEE-ECCCC-CEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEe
Confidence 4899999999999 999999999999999997 55565 788999999999999 6788999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++.|.+++.++|.+...+.+.+.+++...
T Consensus 95 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 123 (222)
T 1ft9_A 95 IRTFEQKLQTCPSMAWGLIAILGRALTSC 123 (222)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887776654
No 38
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.67 E-value=1.5e-16 Score=132.16 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=97.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |++++++|+|++|.++++....+| ++ ++..+.+|++||+.+++.+.|+.++++|.++|+++.|++
T Consensus 39 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~ 115 (333)
T 4ava_A 39 LRAAAGQVLLRQ-GEPAVSFLLISSGSAEVSHVGDDG-VA-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGR 115 (333)
T ss_dssp EEECTTCEEECT-TSBCCCEEEEEECCEEEEEECTTC-CE-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECH
T ss_pred EEECCCCEEEeC-CCcCCEEEEEEeeEEEEEEECCCC-cE-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcH
Confidence 699999999999 999999999999999999988777 44 888999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++|.+++ ++|.+...+.+.+.+++...
T Consensus 116 ~~~~~l~-~~p~~~~~~~~~~~~~~~~~ 142 (333)
T 4ava_A 116 GAFATMV-HIPGVGERLLRTARQRLAAF 142 (333)
T ss_dssp HHHHHHH-HSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hChHHHHHHHHHHHHHHHhh
Confidence 9999999 99999999988888877744
No 39
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.67 E-value=1.5e-16 Score=123.01 Aligned_cols=102 Identities=13% Similarity=0.245 Sum_probs=91.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |++++++|+|.+|.|+++. .+| ++. .+++|++||+.+++.+.++.++++|.++|+++.|+
T Consensus 97 ~~~~~~ge~I~~~-g~~~~~ly~I~~G~v~v~~--~~g-~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~ 169 (202)
T 3bpz_A 97 FEVFQPGDYIIRE-GTIGKKMYFIQHGVVSVLT--KGN-KEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLS 169 (202)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEECEEEEEC--TTS-CCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEE
T ss_pred ceEECCCCEEEEC-CCcCCeEEEEeccEEEEEE--CCC-eEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEE
Confidence 3899999999999 9999999999999999974 333 333 57999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
+++|.++++++|.+...+.+.+..|+...
T Consensus 170 ~~~f~~ll~~~p~~~~~~~~~~~~rl~~~ 198 (202)
T 3bpz_A 170 VDNFNEVLEEYPMMRRAFETVAIDRLDRI 198 (202)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988888888776543
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.67 E-value=3.9e-16 Score=126.99 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=106.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.+++|++|+++ |+.++.+|+|++|.++++. +| ..+..+.+|++||+.+++.+.|+.++++|.++|+++.|+
T Consensus 64 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~---~g---~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~ 136 (291)
T 2qcs_B 64 PVSFIAGETVIQQ-GDEGDNFYVIDQGEMDVYV---NN---EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGID 136 (291)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEECCEEEEE---TT---EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEE
T ss_pred EEEECCCCEEEeC-CCCCceEEEEeeeEEEEEE---CC---eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEE
Confidence 3899999999999 9999999999999999997 33 578899999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 234 (234)
+++|.+++.++|.+...+...+.+++.-+ ...+...+.+..+++|+.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~ 192 (291)
T 2qcs_B 137 RDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIV 192 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEE
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEE
Confidence 99999999999999888888777765543 34455567778888887664
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.66 E-value=6.1e-16 Score=126.44 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=102.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++.+|+|++|.++++. + ...+..+.+|++||+.+++.+.|+.++++|.++|+++.|++
T Consensus 65 ~~~~~g~~i~~~-G~~~~~~yiI~~G~v~v~~---~---g~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~ 137 (299)
T 3shr_A 65 VEYGKDSCIIKE-GDVGSLVYVMEDGKVEVTK---E---GVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR 137 (299)
T ss_dssp EEECTTCEEECT-TCBCCCEEEEEESCEEEEE---T---TEEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECH
T ss_pred EEECCCCEEEcC-CCcCceEEEEEEEEEEEEE---C---CEEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcH
Confidence 899999999999 9999999999999999965 2 26788999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 234 (234)
++|.+++.++|.........+.+++.-+ +..+...+.+..+++|+.|+
T Consensus 138 ~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~ 192 (299)
T 3shr_A 138 QCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYII 192 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEE
T ss_pred HHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEE
Confidence 9999999999987665544444433222 45566667788888887764
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.65 E-value=7.9e-17 Score=137.86 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=104.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++++|+|++|.++++. ..+| ++.++..+.+|++||+++++.+.|+.++++|.++|+++.|++
T Consensus 171 ~~~~~Ge~I~~q-Gd~~d~~YiI~sG~v~v~~-~~~G-~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r 247 (416)
T 3tnp_B 171 KLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDG-VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDR 247 (416)
T ss_dssp EEECTTCEEECT-TSCCCEEEEEEECEEEEEE-ECSS-CEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEH
T ss_pred EEeCCCCEEEeC-CCCCceEEEEEeeEEEEEE-ecCC-CEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEee
Confidence 899999999999 9999999999999999998 4444 678899999999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 234 (234)
+.|.+++.++|.+...+...+.+++.-+ +..+...+.+..++.|+.|+
T Consensus 248 ~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~ 302 (416)
T 3tnp_B 248 VTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQII 302 (416)
T ss_dssp HHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEE
T ss_pred hhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEE
Confidence 9999999999987654444333333222 44555666777777777653
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-16 Score=126.24 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=103.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.+++|++|+++ |++++++|+|++|.++++.. + ..+..+.||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus 32 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~v~~~---~---~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~ 104 (246)
T 3of1_A 32 EKSVPKGATIIKQ-GDQGDYFYVVEKGTVDFYVN---D---NKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALD 104 (246)
T ss_dssp EEEECTTCEEECT-TCCCCEEEEEEECCEEEEST---T---SCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEE
T ss_pred eEEECCCCEEEec-CCCCCEEEEEEeeEEEEEEC---C---EEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEE
Confidence 3799999999999 99999999999999999852 2 235789999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 234 (234)
++.|.+++.++|.....+...+.+++.-+ +..+...+.+..+++|+.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~ 160 (246)
T 3of1_A 105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETII 160 (246)
T ss_dssp HHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEE
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEE
Confidence 99999999999988776666666554433 44566667778888887664
No 44
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.65 E-value=4.1e-16 Score=114.09 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|++|.++++....+|++..+..+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 42 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 120 (149)
T 2pqq_A 42 EGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPE 120 (149)
T ss_dssp TTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTH
T ss_pred CCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcH
Confidence 6899999999999999999998999999999999999999999999999999999999999999999999999999983
No 45
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.63 E-value=6.8e-16 Score=111.99 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=78.0
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
.+.|++|++|+++ |+.++++|+|++|.++++. +| ..+..+.+|++||+.+++.+.++.++++|.++|+++.|+
T Consensus 48 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~---~g---~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~ 120 (139)
T 3ocp_A 48 PVEYGKDSCIIKE-GDVGSLVYVMEDGKVEVTK---EG---VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAID 120 (139)
T ss_dssp EEEECSSCEEECT-TSCCCEEEEEEECCEEEEE---TT---EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEE
T ss_pred EEecCCCCEEEeC-CCcCCEEEEEEeCEEEEEE---CC---EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEc
Confidence 3899999999999 9999999999999999965 22 578899999999999999999999999999999999999
Q ss_pred HHhHHHHHhcchHHHH
Q psy8820 186 QDDCSTLIDADMNVTL 201 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~ 201 (234)
+++|.+++.++|.+..
T Consensus 121 ~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 121 RQCFQTIMMRTGLIKH 136 (139)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHHHhhChHhhh
Confidence 9999999999998753
No 46
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.63 E-value=5.7e-16 Score=114.03 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|++|.|+++....+|++..+..+++|++||+.+++.+.+ +.++++|.++|+++.||++.|..++..+|
T Consensus 49 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p- 127 (154)
T 2z69_A 49 QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT- 127 (154)
T ss_dssp TTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH-
T ss_pred CCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHCh-
Confidence 6999999999999999999888889999999999999999999999998 99999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhC
Q psy8820 80 QELIHSSKREFMEQLG 95 (234)
Q Consensus 80 ~~l~~~~~~~l~~~l~ 95 (234)
... ....+.++.++.
T Consensus 128 ~~~-~~l~~~~~~rl~ 142 (154)
T 2z69_A 128 PLA-LALLAKLSTRLH 142 (154)
T ss_dssp HHH-HHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHH
Confidence 333 333366666654
No 47
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.62 E-value=7.6e-16 Score=117.66 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++.+|+|++|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 76 ~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~ 154 (187)
T 3gyd_A 76 EGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPK 154 (187)
T ss_dssp TTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999884
No 48
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.62 E-value=2.2e-15 Score=118.15 Aligned_cols=79 Identities=11% Similarity=0.268 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 43 ~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 121 (227)
T 3d0s_A 43 EGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 121 (227)
T ss_dssp TTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHH
T ss_pred CCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999984
No 49
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.61 E-value=4.9e-16 Score=115.64 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=73.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|++|.|+++. ..+|++..+..+++|++|||.+++.+.|+.++++|.++|+++.|+++.|..++..+|
T Consensus 75 ~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 75 QGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp TTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 69999999999999999998 778999999999999999999999999999999999999999999999999887777
No 50
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=130.84 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=106.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++++|+|++|.++++. +| ..+..+.+|++||+++++.+.|+.++++|.++|+++.|++
T Consensus 156 ~~~~~ge~I~~~-Gd~~~~~yiI~~G~v~v~~---~~---~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~ 228 (381)
T 4din_B 156 VTHIAGETVIQQ-GNEGDNFYVVDQGEVDVYV---NG---EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDR 228 (381)
T ss_dssp EECCTTCBSSCT-TSBCCEEEECSSSEEEEEE---TT---EEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEH
T ss_pred EEECCCCEEEeC-CCCCCeEEEEEeeEEEEEE---CC---eEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEch
Confidence 899999999999 9999999999999999996 22 4677899999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 234 (234)
+.|.+++.++|.+...+...+.+++.-+ +..+...+.+..+++|+.|+
T Consensus 229 ~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~ 283 (381)
T 4din_B 229 DSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIV 283 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSS
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEE
Confidence 9999999999999888777777766443 44566667888888888774
No 51
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=1.2e-15 Score=112.71 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=81.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.|++|++|+++ |+.++++|+|++|.++++. +| ..+..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus 64 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~---~~---~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 136 (154)
T 3pna_A 64 VSFIAGETVIQQ-GDEGDNFYVIDQGEMDVYV---NN---EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR 136 (154)
T ss_dssp EEECTTCEEECT-TSCCCEEEEEEESCEEEEE---TT---EEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred EEECCCCEEEeC-CCCCCeEEEEEecEEEEEE---CC---EEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeH
Confidence 899999999999 9999999999999999997 22 4677899999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHH
Q psy8820 187 DDCSTLIDADMNVT 200 (234)
Q Consensus 187 ~~~~~l~~~~p~~~ 200 (234)
++|.+++.++|.+.
T Consensus 137 ~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 137 DSYRRILMGSTLRK 150 (154)
T ss_dssp HHHHHHTHHHHHHC
T ss_pred HHHHHHHHhChHHH
Confidence 99999999999764
No 52
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.59 E-value=2e-15 Score=115.62 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=75.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeee-ccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLI-EMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~-~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..++|||+|||. +++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 44 ~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 123 (194)
T 3dn7_A 44 TGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPA 123 (194)
T ss_dssp TTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTT
T ss_pred CCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHH
Confidence 699999999999999999999999999999999999999998 6789999999999999999999999999999999884
No 53
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.59 E-value=4.7e-16 Score=112.43 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=79.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEE--EECCCceEEeeee---eeCcc------eEEEEEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF--TAFPGDMIGGLAV---LTGEA------SVFTIQS 175 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~--~~~~g~~~G~~~~---l~~~~------~~~~v~A 175 (234)
+.|++|++|+++ |+.++++|+|++|.++++ ...+| ++.++. .+.+|++||+.++ +.+.+ +.++++|
T Consensus 32 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~-~~~~g-~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A 108 (137)
T 1wgp_A 32 CLFTEKSYLVRE-GDPVNEMLFIIRGRLESV-TTDGG-RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKA 108 (137)
T ss_dssp CCBCTTEEEECT-TSBCSEEEEEEECCCEEE-CCSSC-SSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEE
T ss_pred EEeCCCCEEEeC-CCCCCeEEEEEeeEEEEE-EcCCC-cceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEE
Confidence 389999999999 999999999999999965 44455 555555 8999999999985 77774 5789999
Q ss_pred cCCeEEEEeCHHhHHHHHhcchHHH
Q psy8820 176 RLPATIAWLPQDDCSTLIDADMNVT 200 (234)
Q Consensus 176 ~~~~~~~~i~~~~~~~l~~~~p~~~ 200 (234)
.++|+++.|++++|.+++.++|.+.
T Consensus 109 ~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 109 LTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp SSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred eEEEEEEEECHHHHHHHHHHCHhhH
Confidence 9999999999999999999999764
No 54
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=3.6e-15 Score=115.20 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC----CceeEEEEccceeEEEeCccccccccCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST----SRNTTVMAVRDSELAKLPEGLCDHLPRS 76 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~----~r~~tv~A~~~~~l~~i~~~~f~~l~~~ 76 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..
T Consensus 27 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~ 106 (207)
T 2oz6_A 27 AGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQ 106 (207)
T ss_dssp TTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred Cch
Q psy8820 77 PSE 79 (234)
Q Consensus 77 ~p~ 79 (234)
+|+
T Consensus 107 ~p~ 109 (207)
T 2oz6_A 107 DSE 109 (207)
T ss_dssp CHH
T ss_pred CHH
Confidence 883
No 55
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.59 E-value=3e-15 Score=115.45 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=88.0
Q ss_pred eeecCCCEEEEecCCCC--ceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVED--NKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~--~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
+.|++|++|+++ |+++ +++|+|++|.++++....+| ++.++..+.||++||+ +++.+.++.++++|.++|+++.|
T Consensus 8 ~~~~~g~~i~~~-g~~~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i 84 (202)
T 2zcw_A 8 VSFKAGDVILYP-GVPGPRDRAYRVLEGLVRLEAVDEEG-NALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL 84 (202)
T ss_dssp EEECTTCEEECS-BSCCTTCCCEEEEESCEEEEEECTTS-CEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC
T ss_pred EEECCCCEEECC-CCCCCCCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE
Confidence 799999999999 9999 99999999999999888777 7889999999999999 88889999999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF 214 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 214 (234)
++.|. |.+...+++.+..++...
T Consensus 85 -~~~~~------p~~~~~~~~~l~~~l~~~ 107 (202)
T 2zcw_A 85 -PENPD------PELLKDLAQHLSQGLAEA 107 (202)
T ss_dssp -CSSCC------HHHHHHHHHHHHHHHHHH
T ss_pred -hHhcC------HHHHHHHHHHHHHHHHHH
Confidence 98876 888877777776665554
No 56
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=5.2e-15 Score=114.54 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..++||++|||.+++.+. |+.++++|.++|+++.+|++.|..++..+|+
T Consensus 33 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 112 (210)
T 3ryp_A 33 QGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 112 (210)
T ss_dssp TTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChH
Confidence 699999999999999999999999999999999999999999999988 8999999999999999999999999999884
No 57
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.58 E-value=3e-15 Score=116.41 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 36 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 114 (216)
T 4ev0_A 36 QGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPL 114 (216)
T ss_dssp TTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999884
No 58
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.58 E-value=3.7e-15 Score=117.22 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 43 ~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 121 (231)
T 3e97_A 43 QDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPR 121 (231)
T ss_dssp TTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHH
T ss_pred CCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998884
No 59
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.58 E-value=5.4e-15 Score=116.54 Aligned_cols=79 Identities=6% Similarity=-0.017 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++.+|+|.+|.|+++...++|++..+..+++|++|||.+++.+.| +.++++|.++|+++.||++.|..++..+|+
T Consensus 57 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 136 (232)
T 1zyb_A 57 SGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDI 136 (232)
T ss_dssp TTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH
T ss_pred CCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHH
Confidence 6999999999999999999988899999999999999999999999988 999999999999999999999999999983
No 60
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.57 E-value=2.2e-14 Score=110.04 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCD 71 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~ 71 (234)
|||+++++|+|++|.|+++...++|++..+..++||++||| +++.+.|+.++++|.++|+++.||++.|.
T Consensus 13 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 13 RGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp TTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCC
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcC
Confidence 69999999999999999999999999999999999999999 99999999999999999999999999998
No 61
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.56 E-value=5.4e-15 Score=116.72 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 48 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 126 (237)
T 3fx3_A 48 QEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE 126 (237)
T ss_dssp TTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999884
No 62
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.56 E-value=7.1e-15 Score=114.37 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+|+
T Consensus 36 ~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 115 (213)
T 1o5l_A 36 QDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRE 115 (213)
T ss_dssp TTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHH
Confidence 699999999999999999999999999999999999999999999886 9999999999999999999999999999884
No 63
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.56 E-value=9.3e-15 Score=117.28 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|++|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+|+
T Consensus 83 ~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~ 162 (260)
T 3kcc_A 83 QGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD 162 (260)
T ss_dssp TTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred CCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHH
Confidence 699999999999999999999999999999999999999999999998 8999999999999999999999999999883
No 64
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.55 E-value=1.4e-14 Score=113.64 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSP 77 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~ 77 (234)
+||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+
T Consensus 48 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 125 (230)
T 3iwz_A 48 PGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTS 125 (230)
T ss_dssp TTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTT
T ss_pred CCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999875 89999999999999999999999999988
No 65
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.55 E-value=2.1e-15 Score=130.74 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCC-ccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGS-NDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~-~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
.+.|++|++|+++ |+.++++|+|++|.++++....+|. ++.++..++||++||+.+ +.+.|+.++++|.++|+++.|
T Consensus 67 ~~~~~~g~~i~~~-Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i 144 (469)
T 1o7f_A 67 YENLEKGITLFRQ-GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRI 144 (469)
T ss_dssp EEEECTTCEEECT-TSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEE
T ss_pred EEEECCCCEEEeC-CCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEE
Confidence 3899999999999 9999999999999999998887763 258999999999999999 999999999999999999999
Q ss_pred CHHhHHHHHhcchHHHHHHHH
Q psy8820 185 PQDDCSTLIDADMNVTLKIAH 205 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~ 205 (234)
++++|.+++.++|.+...+++
T Consensus 145 ~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 145 EQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp EHHHHHHHHHHHGGGTTTTSC
T ss_pred cHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999997665544
No 66
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.55 E-value=4e-15 Score=114.49 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|.+|.|+++. .+|+ .+..+++|++|||.+++.+.||.+|++|.++|+++.|+++.|..++..+|
T Consensus 108 ~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p 181 (198)
T 2ptm_A 108 EGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFP 181 (198)
T ss_dssp TTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHCh
Confidence 69999999999999999986 5665 78899999999999999999999999999999999999999999999998
No 67
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.54 E-value=5e-15 Score=116.51 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++.+|+|.+|.|+++...++|++..+..++||++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 47 ~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 125 (232)
T 2gau_A 47 EGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTS 125 (232)
T ss_dssp TTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHH
Confidence 6999999999999999999888889999999999999999999999999999999999999999999999999999884
No 68
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.53 E-value=3.4e-14 Score=112.80 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC--ceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS--RNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~--r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|++|.|+++...++|++..+..++||++||+.+++.+.| +.++++|.++|+++.||++.|..++..+|
T Consensus 57 ~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 136 (243)
T 3la7_A 57 PGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENP 136 (243)
T ss_dssp TTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred CCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCH
Confidence 6999999999999999999999999999999999999999999999886 56999999999999999999999999998
Q ss_pred h
Q psy8820 79 E 79 (234)
Q Consensus 79 ~ 79 (234)
+
T Consensus 137 ~ 137 (243)
T 3la7_A 137 E 137 (243)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.52 E-value=4.7e-15 Score=116.17 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..++||++|||.+++.+.| +.++++|.++|+++.||++.|..++..+|+
T Consensus 46 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 125 (227)
T 3dkw_A 46 QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP 125 (227)
T ss_dssp TTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTH
T ss_pred CCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence 6999999999999999999988899999999999999999999999999 999999999999999999999999999984
No 70
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.52 E-value=2.1e-14 Score=111.90 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcE--eeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDL--VGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~--fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|.+|.|+++...++|++..+..++||++ ||+.+++.+.|+.++++|.++|+++.||++.|..++..+|
T Consensus 40 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 119 (220)
T 3dv8_A 40 GNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSA 119 (220)
T ss_dssp GGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCH
Confidence 68999999999999999999999999999999999999 7999999999999999999999999999999999999988
Q ss_pred h
Q psy8820 79 E 79 (234)
Q Consensus 79 ~ 79 (234)
+
T Consensus 120 ~ 120 (220)
T 3dv8_A 120 P 120 (220)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=105.15 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=77.4
Q ss_pred eeeec-CCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEE-EEcCCeEEEE
Q psy8820 106 VEHIP-GGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTI-QSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~-~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v-~A~~~~~~~~ 183 (234)
.+.++ +|++|+++ |+.++++|+|++|.++++. .+| ++ ..+.+|++||+.+++.+.++.+++ +|.++|+++.
T Consensus 41 ~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~--~~g-~~---~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~ 113 (134)
T 2d93_A 41 FEVVEQAGAIILED-GQELDSWYVILNGTVEISH--PDG-KV---ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVC 113 (134)
T ss_dssp EEEECSSSCEEECT-TCEECEEEECCBSCEEEEC--SSS-CE---EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEE
T ss_pred EEEecCCCCEEEeC-CCCCCeEEEEEeCEEEEEc--CCC-cE---EEecCCCccChhHhcCCCcceeEEEEEecceEEEE
Confidence 38999 99999999 9999999999999999985 344 33 558999999999999999998888 9999999999
Q ss_pred eCHHhHHHHHhcchH
Q psy8820 184 LPQDDCSTLIDADMN 198 (234)
Q Consensus 184 i~~~~~~~l~~~~p~ 198 (234)
|++++|.+++.+++.
T Consensus 114 i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 114 IAQQDYWRILNHVEK 128 (134)
T ss_dssp EEHHHHHHHSSCCSS
T ss_pred EeHHHHHHHHHHHHh
Confidence 999999999998774
No 72
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.51 E-value=2.1e-14 Score=119.08 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
|||+++++|+|.+|.|+++....+|++ .+..+++|++|||.+++.+.||++|++|.++|+++.|+++.|..++ ++|.
T Consensus 50 ~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~ 126 (333)
T 4ava_A 50 QGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPG 126 (333)
T ss_dssp TTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTT
T ss_pred CCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChH
Confidence 699999999999999999999888987 8899999999999999999999999999999999999999999999 7883
No 73
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.50 E-value=1.5e-14 Score=104.78 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|++|.|+++. +| ..+..+++|++|||.+++.+.|+.+|++|.++|+++.|+++.|..++.++|
T Consensus 60 ~g~~~~~~y~i~~G~v~~~~---~g--~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 60 EGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp TTSCCCEEEEEEECCEEEEE---TT--EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred CCCcCCEEEEEEeCEEEEEE---CC--EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 69999999999999999965 44 478999999999999999999999999999999999999999999999988
No 74
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.48 E-value=4.3e-14 Score=109.86 Aligned_cols=87 Identities=23% Similarity=0.234 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC--CceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST--SRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~--~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|.+|.|+++. +| ..+..+++|++|||.+++.+. ||++||+|.++|+++.|+++.|..++..+|
T Consensus 112 ~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 186 (212)
T 3ukn_A 112 QGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYP 186 (212)
T ss_dssp TTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHCh
Confidence 69999999999999999985 34 678899999999999999998 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh
Q psy8820 79 EQELIHSSKREFMEQL 94 (234)
Q Consensus 79 ~~~l~~~~~~~l~~~l 94 (234)
+ .. ....+.+++.+
T Consensus 187 ~-~~-~~~~~~l~~~l 200 (212)
T 3ukn_A 187 E-YA-QKFVSEIQHDL 200 (212)
T ss_dssp H-HH-HHHHHHHHHHE
T ss_pred H-HH-HHHHHHHHHhh
Confidence 3 32 33335555543
No 75
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.48 E-value=1.2e-13 Score=109.87 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++...++|++..+..++||++||| ++.+. +.++++|.++|+++.||++.|..++..+|+
T Consensus 46 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 121 (250)
T 3e6c_C 46 PGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDED 121 (250)
T ss_dssp TTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTH
T ss_pred CCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHH
Confidence 69999999999999999999999999999999999999999 78888 999999999999999999999999999884
No 76
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.47 E-value=3.6e-14 Score=105.01 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccC--CCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTS--TSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~--~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|.+|.|+++.. +..+..+++|++|||.+++.+ .|+.++++|.++|+++.||++.|..++..+|
T Consensus 64 ~g~~~~~~y~i~~G~v~~~~~-----~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 64 AGESVDSLCFVVSGSLEVIQD-----DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp TTSBCCEEEEEEESEEEEEET-----TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CCCCccEEEEEEeeEEEEEEC-----CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 699999999999999999872 268899999999999999988 7999999999999999999999999999988
No 77
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.47 E-value=3.2e-14 Score=105.00 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|++|.|+++. +| ..+..+++|++|||.+++.+.|+.++++|.++|+++.|+++.|..++.++|
T Consensus 75 ~G~~~~~~y~i~~G~v~~~~---~~--~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 75 QGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp TTSCCCEEEEEEESCEEEEE---TT--EEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEecEEEEEE---CC--EEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 69999999999999999987 34 477889999999999999999999999999999999999999999987776
No 78
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.47 E-value=3.6e-14 Score=109.50 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++. .+|++. .+++|++|||.+++.+.||.+||+|.++|+++.|+++.|..++..+|+
T Consensus 109 ~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~ 182 (202)
T 3bpz_A 109 EGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 182 (202)
T ss_dssp TTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG
T ss_pred CCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHH
Confidence 69999999999999999974 456544 589999999999999999999999999999999999999999999994
No 79
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.46 E-value=3.1e-14 Score=102.81 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ 80 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~ 80 (234)
+||+++++|+|.+|.|+++... ...+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus 48 ~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~- 119 (138)
T 1vp6_A 48 IGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPE- 119 (138)
T ss_dssp TTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHH-
T ss_pred CCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHH-
Confidence 6999999999999999997643 24789999999999999999999999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhC
Q psy8820 81 ELIHSSKREFMEQLG 95 (234)
Q Consensus 81 ~l~~~~~~~l~~~l~ 95 (234)
+.....+.+.+++.
T Consensus 120 -~~~~~~~~~~~r~~ 133 (138)
T 1vp6_A 120 -IAEIFRKTALERRG 133 (138)
T ss_dssp -HHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHhhc
Confidence 33333355555543
No 80
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.46 E-value=7.8e-15 Score=105.96 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEE--eecCCcEeeeecc---ccCCC------ceeEEEEccceeEEEeCccc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEA--EYSKGDLVGLIEM---VTSTS------RNTTVMAVRDSELAKLPEGL 69 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~--~~~~G~~fGe~~l---l~~~~------r~~tv~A~~~~~l~~i~~~~ 69 (234)
|||+++.+|+|++|.|+++ ...+|++..+. .+++|++|||.++ +.+.| +++|++|.++|+++.|+++.
T Consensus 43 ~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~ 121 (137)
T 1wgp_A 43 EGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADE 121 (137)
T ss_dssp TTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHH
T ss_pred CCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHH
Confidence 6999999999999999965 56778777666 9999999999996 78775 57999999999999999999
Q ss_pred cccccCCCc
Q psy8820 70 CDHLPRSPS 78 (234)
Q Consensus 70 f~~l~~~~p 78 (234)
|..++.++|
T Consensus 122 ~~~l~~~~p 130 (137)
T 1wgp_A 122 LKFVASQFR 130 (137)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHCH
Confidence 998877766
No 81
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.46 E-value=2.4e-13 Score=107.43 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCc--eeEEEEc-cceeEEEeCccccccccCCC
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSR--NTTVMAV-RDSELAKLPEGLCDHLPRSP 77 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r--~~tv~A~-~~~~l~~i~~~~f~~l~~~~ 77 (234)
+||+++++|+|.+|.|+++...++|++..+..+ +|++|||.+++.+.++ ..++.|. ++|+++.||++.|..++..+
T Consensus 32 ~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~ 110 (238)
T 2bgc_A 32 QWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKN 110 (238)
T ss_dssp TTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHC
T ss_pred CCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHC
Confidence 699999999999999999999999999999999 9999999999998864 6677777 59999999999999999888
Q ss_pred ch
Q psy8820 78 SE 79 (234)
Q Consensus 78 p~ 79 (234)
|+
T Consensus 111 p~ 112 (238)
T 2bgc_A 111 LT 112 (238)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 82
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.44 E-value=7.4e-15 Score=123.13 Aligned_cols=98 Identities=18% Similarity=0.365 Sum_probs=0.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ 186 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~ 186 (234)
+.+++|+.|+++ |++++++|+|.+|.++++..+ ...+++|++||+.+++.+.|+.++++|.++|+++.+++
T Consensus 254 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~--------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~ 324 (355)
T 3beh_A 254 RTVPAGAVICRI-GEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS 324 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCEEEeC-CCcCceEEEEEeeEEEEEECC--------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeH
Confidence 899999999999 999999999999999998653 24789999999999999999999999999999999999
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSP 213 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~ 213 (234)
++|.++++++|++...+.+.+.+|+.+
T Consensus 325 ~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 325 ADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999998888877776543
No 83
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.43 E-value=5.3e-14 Score=101.31 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEE-EEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTV-MAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv-~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
+||+++++|+|++|.|+++. .+|++ ..+++|++|||.+++.+.|+.+++ +|.++|+++.|+++.|..++...+
T Consensus 54 ~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 54 DGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp TTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred CCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 68999999999999999985 56765 458999999999999999999999 999999999999999999988766
No 84
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.41 E-value=6.8e-13 Score=103.44 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++ ..++|++..+..++||++||| |+.++++|.++|+++.||++.|..++..+|+
T Consensus 41 ~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 111 (220)
T 2fmy_A 41 PNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPA 111 (220)
T ss_dssp TTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTH
T ss_pred CCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence 6999999999999999995 678899999999999999999 8999999999999999999999999999884
No 85
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.40 E-value=1.2e-12 Score=100.77 Aligned_cols=69 Identities=25% Similarity=0.174 Sum_probs=66.1
Q ss_pred CCCCC--CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccc
Q psy8820 1 QYDRS--DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCD 71 (234)
Q Consensus 1 ~Gd~~--~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~ 71 (234)
+||++ +++|+|++|.|+++...++|++..+..++||++||+ +++.+.|+.++++|.++|+++.| ++.|.
T Consensus 19 ~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 19 PGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp SBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred CCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcC
Confidence 68999 999999999999999999999999999999999999 99999999999999999999999 99887
No 86
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.37 E-value=1.1e-12 Score=102.36 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE 79 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~ 79 (234)
+||+++++|+|.+|.|+++ ..++|++..+..++||++|| .|+.++++|.++|+++.||++.|..++..+|+
T Consensus 37 ~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 107 (222)
T 1ft9_A 37 GEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQKLQTCPS 107 (222)
T ss_dssp TTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGG
T ss_pred CCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHHHHHChH
Confidence 6999999999999999997 77889999999999999999 78999999999999999999999999998884
No 87
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.35 E-value=2.1e-12 Score=121.61 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=84.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCC-CccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-SNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
+.+++|++||+| |+.++++|+|++|.|.|+....++ ..+..+..+.||+.||+ +++.+.|+.++++|.++|+++.|+
T Consensus 68 e~~~~Ge~Ifrq-Gd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~ 145 (999)
T 4f7z_A 68 ENLEKGITLFRQ-GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIE 145 (999)
T ss_dssp EEECTTCEEECT-TSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEE
T ss_pred EEECCCCEEEcC-CCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEE
Confidence 899999999999 999999999999999999765442 25678889999999999 889999999999999999999999
Q ss_pred HHhHHHHHhcchHHHH
Q psy8820 186 QDDCSTLIDADMNVTL 201 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~ 201 (234)
+++|..++.++|+...
T Consensus 146 r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 146 QEDFKALWEKYRQYMA 161 (999)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChHHHH
Confidence 9999999999987543
No 88
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.30 E-value=2.5e-12 Score=116.21 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=82.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcC-CeEEEEeC
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRL-PATIAWLP 185 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~-~~~~~~i~ 185 (234)
+.|++|++|+++ |+.++++|+|++|.|+++.. | + .++.++.+|++||+.+++.+.++.++++|.+ +|+++.|+
T Consensus 59 ~~~~kGe~I~~e-Gd~~~~lyiIlsG~V~v~~~---g-~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~ 132 (694)
T 3cf6_E 59 SHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIY---G-K-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVD 132 (694)
T ss_dssp EECSTTCEEECT-TSBCCEEEEEEESEEEEEET---T-T-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEE
T ss_pred EEECCCCEEECC-CCcCCeEEEEEEEEEEEEEe---C-C-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEe
Confidence 689999999999 99999999999999999974 2 2 6889999999999999999999999999999 59999999
Q ss_pred HHhHHHHHhcchHHHH
Q psy8820 186 QDDCSTLIDADMNVTL 201 (234)
Q Consensus 186 ~~~~~~l~~~~p~~~~ 201 (234)
+++|.+++.++|.+..
T Consensus 133 ~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 133 KEDFNRILRDVEANTV 148 (694)
T ss_dssp HHHHHHHTTTTCCCCE
T ss_pred HHHHHHHHHHCHHHHH
Confidence 9999999999998754
No 89
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.15 E-value=3.4e-12 Score=106.88 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p 78 (234)
|||+++++|+|.+|.++++..+ ...+++||+|||.+++.+.||.++++|.++|+++.+|+++|.++++++|
T Consensus 265 ~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p 335 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 335 (355)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCH
Confidence 6999999999999999998753 2479999999999999999999999999999999999999999999998
No 90
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.13 E-value=3.9e-11 Score=108.50 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEcc-ceeEEEeCccccccccCCCc
Q psy8820 1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVR-DSELAKLPEGLCDHLPRSPS 78 (234)
Q Consensus 1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~-~~~l~~i~~~~f~~l~~~~p 78 (234)
|||+++++|+|++|.|+++.. |+ ..+..+++||+|||.+++.+.|+.++++|.+ +|+++.|+++.|..++...|
T Consensus 70 eGd~~~~lyiIlsG~V~v~~~---g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 70 QGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp TTSBCCEEEEEEESEEEEEET---TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred CCCcCCeEEEEEEEEEEEEEe---CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 699999999999999999874 33 6889999999999999999999999999999 59999999999998887766
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=96.92 E-value=0.05 Score=42.00 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=84.9
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccc----ccc-ccCCCc
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGL----CDH-LPRSPS 78 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~----f~~-l~~~~p 78 (234)
+.+.+++|++|+++++.. |+. ..+++||++ .+ ...-...++|.+++.++.+.... |.. ..+..+
T Consensus 56 ~~~~~~~Vl~G~~~~~i~---~~~---~~l~~Gd~~----~~-p~~~~H~~~a~~~~~~l~i~~~~~~~~~~~~~~~~l~ 124 (227)
T 3rns_A 56 LGNRYYYCFNGNGEIFIE---NNK---KTISNGDFL----EI-TANHNYSIEARDNLKLIEIGEKIGDGNMENKTLKMLE 124 (227)
T ss_dssp SSCEEEEEEESEEEEEES---SCE---EEEETTEEE----EE-CSSCCEEEEESSSEEEEEEEECC--------------
T ss_pred CCCEEEEEEeCEEEEEEC---CEE---EEECCCCEE----EE-CCCCCEEEEECCCcEEEEEEeecccchhhhhHhhcCC
Confidence 578899999999998864 433 458999875 22 22233456688999998773221 110 011111
Q ss_pred hHHHHHHHHHHHHHHhCCCCCcc----------ccceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820 79 EQELIHSSKREFMEQLGVKDFSG----------LDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH 148 (234)
Q Consensus 79 ~~~l~~~~~~~l~~~l~~~~~~~----------l~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~ 148 (234)
....+ .+.+.....+... +...+..+++|..+-.- -.+.+.+++|++|.+.+... + +
T Consensus 125 ~~~~~-----~~~d~~~~~~g~~~~~~l~~~~~~~~~~~~~~~G~~~~~H-~H~~~e~~~Vl~G~~~~~i~---g-~--- 191 (227)
T 3rns_A 125 SASAF-----NLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPH-KAPGDALVTVLDGEGKYYVD---G-K--- 191 (227)
T ss_dssp --CCE-----ESGGGSCCCTTCEEEEEEEEETTEEEEEEEECTTCEEEEE-CCSSEEEEEEEEEEEEEEET---T-E---
T ss_pred ccccC-----cHHHccccCCCCEEEEEEEECCCeEEEEEEECCCCccCCE-ECCCcEEEEEEeEEEEEEEC---C-E---
Confidence 00000 0011111111111 11122788999987655 55677899999999999753 2 1
Q ss_pred EEEECCCceEEeeeeeeCcceEEEEEE-cCCeEEEEe
Q psy8820 149 LFTAFPGDMIGGLAVLTGEASVFTIQS-RLPATIAWL 184 (234)
Q Consensus 149 ~~~~~~g~~~G~~~~l~~~~~~~~v~A-~~~~~~~~i 184 (234)
...+.+||++=.- .+.+ ..+.+ .++++++.+
T Consensus 192 ~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 192 PFIVKKGESAVLP---ANIP--HAVEAETENFKMLLI 223 (227)
T ss_dssp EEEEETTEEEEEC---TTSC--EEEECCSSCEEEEEE
T ss_pred EEEECCCCEEEEC---CCCc--EEEEeCCCCEEEEEE
Confidence 3567899875422 2333 34556 777777643
No 92
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=94.95 E-value=0.53 Score=36.51 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccccccc-CCCchHHHH
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLP-RSPSEQELI 83 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~-~~~p~~~l~ 83 (234)
...+++|++|++.+.. +|+ ...+.+||.+= -+=.+.++......-++|.++.+.+ +.... ...+..
T Consensus 54 ~~e~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i~--~ip~~~~H~~~n~~~~~~~~l~i~r--~~~~e~~~~p~g--- 120 (243)
T 3h7j_A 54 EVQIGMVVSGELMMTV---GDV---TRKMTALESAY--IAPPHVPHGARNDTDQEVIAIDIKR--LKADETYTSPED--- 120 (243)
T ss_dssp SEEEEEEEESEEEEEE---TTE---EEEEETTTCEE--EECTTCCEEEEECSSSCEEEEEEEE--CCTTCCCCCCTT---
T ss_pred CcEEEEEEEeEEEEEE---CCE---EEEECCCCEEE--EcCCCCcEeeEeCCCCcEEEEEEec--cCccccCCCchh---
Confidence 5679999999998876 342 24689998530 0113445544433344466665532 22100 001100
Q ss_pred HHHHHHHHHHhCCCCC-----------ccccceeeeecC-CCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEE
Q psy8820 84 HSSKREFMEQLGVKDF-----------SGLDIRVEHIPG-GTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFT 151 (234)
Q Consensus 84 ~~~~~~l~~~l~~~~~-----------~~l~~~~~~~~~-g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~ 151 (234)
.+...+.-.+. ..+...+..+++ |..+-.- --....+++|++|.+.+.... + ...
T Consensus 121 -----~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~H-~H~~~e~~~Vl~G~~~~~i~~-----~--~~~ 187 (243)
T 3h7j_A 121 -----YFLDIFKTRDLLPGMEVTFFVEDWVEIMLAKIPGNGGEMPFH-KHRNEQIGICIGGGYDMTVEG-----C--TVE 187 (243)
T ss_dssp -----SEECCEECSCSBTTBCEEEEEETTEEEEEEEECTTTEEEEEE-CCSSEEEEEECSSCEEEEETT-----E--EEE
T ss_pred -----hhhhhccCcccccCcceeeeccceeEEEEEEECCCCCcCCCE-eCCCcEEEEEEECEEEEEECC-----E--EEE
Confidence 00000000010 011222366888 8766554 555678999999999997532 1 345
Q ss_pred ECCCceEE
Q psy8820 152 AFPGDMIG 159 (234)
Q Consensus 152 ~~~g~~~G 159 (234)
+.+||.+-
T Consensus 188 l~~Gd~i~ 195 (243)
T 3h7j_A 188 MKFGTAYF 195 (243)
T ss_dssp ECTTCEEE
T ss_pred ECCCCEEE
Confidence 89999765
No 93
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=92.74 E-value=3 Score=32.97 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=47.5
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
+.-+.+|+.+..+ ... +.++-+++|...|+... ..+.|.+||.. +--....++..+.++|..+.|.
T Consensus 211 V~l~G~Ges~~~~-~~~-d~wiWqLEGss~Vt~~~-------q~~~L~~~DsL-----LIpa~~~y~~~r~~gsv~L~I~ 276 (286)
T 2qnk_A 211 VIAYGQGSSEGLR-QNV-DVWLWQLEGSSVVTMGG-------RRLSLAPDDSL-----LVLAGTSYAWERTQGSVALSVT 276 (286)
T ss_dssp EEEECSEEEEECC-CSS-CEEEEEEESCEEEEETT-------EEEEECTTEEE-----EECTTCCEEEEECTTCEEEEEE
T ss_pred EEEEcCCcccccc-CcC-cEEEEEEcCceEEEECC-------eEEeccCCCEE-----EecCCCeEEEEecCCeEEEEEE
Confidence 3557788887777 665 88999999999876532 23457777743 2233356888999999999875
Q ss_pred H
Q psy8820 186 Q 186 (234)
Q Consensus 186 ~ 186 (234)
.
T Consensus 277 ~ 277 (286)
T 2qnk_A 277 Q 277 (286)
T ss_dssp E
T ss_pred E
Confidence 4
No 94
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=92.63 E-value=2.1 Score=33.20 Aligned_cols=154 Identities=12% Similarity=0.107 Sum_probs=78.0
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-Cch----
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSE---- 79 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~---- 79 (234)
++.+++|++|++.+... |+. ..+++||++= +=.+.|+..... +++.++.+.+ .|..+-.. .|.
T Consensus 68 ~ee~~~Vl~G~~~~~~~---~~~---~~l~~Gd~~~---~p~~~~H~~~n~--~~~~~l~v~~-~y~~~~g~~~p~~~vg 135 (246)
T 1sfn_A 68 YQRFAFVLSGEVDVAVG---GET---RTLREYDYVY---LPAGEKHMLTAK--TDARVSVFEK-PYQTVEGVQAPGVYWG 135 (246)
T ss_dssp SEEEEEEEEEEEEEECS---SCE---EEECTTEEEE---ECTTCCCEEEEE--EEEEEEEEEE-CCCCBTTBCCCCCEEE
T ss_pred eeEEEEEEECEEEEEEC---CEE---EEECCCCEEE---ECCCCCEEEEeC--CCEEEEEEEe-eeccCCCCcCCceeec
Confidence 46788999999988753 433 3599998862 223456555444 6676665531 12211110 010
Q ss_pred --HH----HHHHHHHHHHHHhCCCCCc--cccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccEEEE
Q psy8820 80 --QE----LIHSSKREFMEQLGVKDFS--GLDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF 150 (234)
Q Consensus 80 --~~----l~~~~~~~l~~~l~~~~~~--~l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~ 150 (234)
+. -..-. ..+..+.-+.... .+.....++++|..+-. . -....+.++|++|...+.... ...
T Consensus 136 ~~~dv~~~~~~~~-~g~~~r~l~p~~~~~~~~~~~~tl~PG~~~~~~~-~h~~ee~~~vLeG~~~~~~~~-------~~~ 206 (246)
T 1sfn_A 136 NERENPGYPFEGD-DHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAE-VHYMEHGLLMLEGEGLYKLEE-------NYY 206 (246)
T ss_dssp ETTTCCCEETTSC-TTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCB-CCSSCEEEEEEECEEEEEETT-------EEE
T ss_pred cHhhCCccccCCC-CCeEEEEeCCCccCCCeEEEEEEECCCCccCccc-CCCceEEEEEEECEEEEEECC-------EEE
Confidence 00 00000 0000000011111 11222378888886653 3 445678999999999987532 124
Q ss_pred EECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820 151 TAFPGDMIGGLAVLTGEASVFTIQSRLPATIA 182 (234)
Q Consensus 151 ~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~ 182 (234)
.+++||++-.- .+.|..+.-..-++++.+
T Consensus 207 ~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl 235 (246)
T 1sfn_A 207 PVTAGDIIWMG---AHCPQWYGALGRNWSKYL 235 (246)
T ss_dssp EEETTCEEEEC---TTCCEEEEEESSSCEEEE
T ss_pred EcCCCCEEEEC---CCCCEEEEcCCCCCEEEE
Confidence 68999975422 234443333334445444
No 95
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=92.29 E-value=0.51 Score=37.00 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=69.7
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcc--cccccc--------
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEG--LCDHLP-------- 74 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~--~f~~l~-------- 74 (234)
++.+++|++|++.+... |+. ..+++||++= +=.+.|+.......++++++.+.+. ...-+.
T Consensus 81 ~ee~~~Vl~G~l~~~~~---~~~---~~L~~Gd~~~---~~~~~~H~~~N~~~~~~~~l~v~~~~~~~~g~~p~~~v~~~ 151 (261)
T 1rc6_A 81 IETFLYVISGNITAKAE---GKT---FALSEGGYLY---CPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNA 151 (261)
T ss_dssp EEEEEEEEESEEEEEET---TEE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEG
T ss_pred ceEEEEEEEeEEEEEEC---CEE---EEECCCCEEE---ECCCCCEEEEeCCCCCEEEEEEEeccccCCCCCCceEEcCH
Confidence 45799999999998763 432 4699999863 2234555555444456666655321 111110
Q ss_pred CCCchHHHHHHHHHHHHHHhCCC--CCccccceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 75 RSPSEQELIHSSKREFMEQLGVK--DFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 75 ~~~p~~~l~~~~~~~l~~~l~~~--~~~~l~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
.+.+.. ..... ..+..+.-+. ....+......+++|..+-...-.....+++|++|.+.+... + + ...+
T Consensus 152 ~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~---~-~---~~~l 222 (261)
T 1rc6_A 152 SELERI-HYEGM-DDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD---N-N---WIPV 222 (261)
T ss_dssp GGSCCC---------CEEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS---S-C---EEEE
T ss_pred HHCCcc-cCCCC-cceEEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC---C-E---EEEe
Confidence 000000 00000 0000000011 111122233778888755433023457899999999998753 2 1 2468
Q ss_pred CCCceEE
Q psy8820 153 FPGDMIG 159 (234)
Q Consensus 153 ~~g~~~G 159 (234)
++||++=
T Consensus 223 ~~GD~i~ 229 (261)
T 1rc6_A 223 KKGDYIF 229 (261)
T ss_dssp ETTCEEE
T ss_pred CCCCEEE
Confidence 8999754
No 96
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=92.15 E-value=4.1 Score=33.24 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=33.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-..-......+++|++|.+.+.....+| +.....+++||++-
T Consensus 239 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g--~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEG--KASVSRLQQGDVGY 289 (361)
T ss_dssp EEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTT--CEEEEEECTTCEEE
T ss_pred EEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCC--cEEEEEECCCCEEE
Confidence 4556666544330233478999999999998654444 23456789999774
No 97
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=89.62 E-value=0.29 Score=38.97 Aligned_cols=136 Identities=10% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-Cch----
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSE---- 79 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~---- 79 (234)
++.+++|++|++.+... |+. ..+++||++= +=.+.++.......++++++.+.. .+...-.. .|+
T Consensus 90 ~eE~~~Vl~G~l~v~v~---g~~---~~L~~GD~i~---ip~~~~H~~~N~g~~~~~~l~v~~-~y~~~~g~~~p~~~vg 159 (278)
T 1sq4_A 90 AEAVLFVVEGELSLTLQ---GQV---HAMQPGGYAF---IPPGADYKVRNTTGQHTRFHWIRK-HYQKVDGVPLPEAFVT 159 (278)
T ss_dssp EEEEEEEEESCEEEEES---SCE---EEECTTEEEE---ECTTCCEEEECCSSSCEEEEEEEE-ECCCCTTCCCCCCEEE
T ss_pred ceEEEEEEeCEEEEEEC---CEE---EEECCCCEEE---ECCCCcEEEEECCCCCEEEEEEEe-ccccCCCCcCCccccc
Confidence 56799999999988764 333 3699998862 113445444433345566555532 11111000 010
Q ss_pred --HHH----HHHHHHHH--HHHhCCCCCcc--ccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820 80 --QEL----IHSSKREF--MEQLGVKDFSG--LDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDVH 148 (234)
Q Consensus 80 --~~l----~~~~~~~l--~~~l~~~~~~~--l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~ 148 (234)
+.+ .... +.. ..+.-+..... +.-...++++|..+-. + -..-.+.++|++|...+... + .
T Consensus 160 n~~di~~~~~~~~-~~~~~~~r~l~p~~~~~~~~~~~~~l~pG~~i~~~~-~h~~e~~~~il~G~~~~~~~---~----~ 230 (278)
T 1sq4_A 160 NEQDIQPLVMPDT-EGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAE-THVMEHGLYVLEGKAVYRLN---Q----D 230 (278)
T ss_dssp EGGGSCCEECSSG-GGCEEEECSSCTTCTTCSEEEEEEEECSSSEESCCC-CCSEEEEEEEEECEEEEEET---T----E
T ss_pred chhhcCcccCCCC-CCceeEEEEecCCCcCCCeEEEEEEECCCCCcCCCC-CCCccEEEEEEeCEEEEEEC---C----E
Confidence 000 0000 000 00111111111 2223388999998874 4 34445789999999998753 2 2
Q ss_pred EEEECCCceEE
Q psy8820 149 LFTAFPGDMIG 159 (234)
Q Consensus 149 ~~~~~~g~~~G 159 (234)
...+++||++-
T Consensus 231 ~~~v~~GD~~~ 241 (278)
T 1sq4_A 231 WVEVEAGDFMW 241 (278)
T ss_dssp EEEEETTCEEE
T ss_pred EEEeCCCCEEE
Confidence 35679999753
No 98
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=88.53 E-value=9.3 Score=31.45 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=33.6
Q ss_pred eeecCCCEEEEecCCCC-ceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVED-NKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~-~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...-.. -... ..+++|++|.+++.....+| ......+++||++-
T Consensus 262 ~~l~pG~~~~~h-~H~~~~E~~~Vl~G~~~~~i~~~~g--~~~~~~l~~GD~~~ 312 (385)
T 1j58_A 262 VTVEPGAMRELH-WHPNTHEWQYYISGKARMTVFASDG--HARTFNYQAGDVGY 312 (385)
T ss_dssp EEECTTCEEEEE-ECSSSCEEEEEEESEEEEEEEEETT--EEEEEEEESSCEEE
T ss_pred EEECCCcccCce-eCCCCCEEEEEEeCeEEEEEEcCCC--cEEEEEEcCCCEEE
Confidence 456666655433 3334 78999999999998764444 23456789999764
No 99
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=87.62 E-value=2.6 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
+.+.+++|++|++.+... ++ ...+.+||++ ++ .+.++... +.+++.++.+
T Consensus 57 ~~~e~~~vl~G~~~~~i~---~~---~~~l~~Gd~i----~i~~~~~H~~~--~~~~~~~~~i 107 (114)
T 2ozj_A 57 FGDTLYLILQGEAVITFD---DQ---KIDLVPEDVL----MVPAHKIHAIA--GKGRFKMLQI 107 (114)
T ss_dssp SSCEEEEEEEEEEEEEET---TE---EEEECTTCEE----EECTTCCBEEE--EEEEEEEEEE
T ss_pred CCCeEEEEEeCEEEEEEC---CE---EEEecCCCEE----EECCCCcEEEE--eCCCcEEEEE
Confidence 456899999999987753 32 3468999875 23 34455544 3466666554
No 100
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=86.60 E-value=4.9 Score=30.56 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=48.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|+.+-.. -.+.+.+++|++|.+++.... +. ..+++||++=-- .+. ...+.|.+++.++.|
T Consensus 42 ~~~~~G~~~~~h-~h~~~~~~~Vl~G~~~~~i~~----~~---~~l~~Gd~~~~p---~~~--~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 42 FSLAKDEEITAE-AMLGNRYYYCFNGNGEIFIEN----NK---KTISNGDFLEIT---ANH--NYSIEARDNLKLIEI 106 (227)
T ss_dssp EEECTTCEEEEC-SCSSCEEEEEEESEEEEEESS----CE---EEEETTEEEEEC---SSC--CEEEEESSSEEEEEE
T ss_pred EEECCCCccCcc-ccCCCEEEEEEeCEEEEEECC----EE---EEECCCCEEEEC---CCC--CEEEEECCCcEEEEE
Confidence 788999998887 778999999999999998632 22 467898865321 133 456678899999877
No 101
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=86.57 E-value=5.3 Score=29.18 Aligned_cols=60 Identities=7% Similarity=0.027 Sum_probs=39.4
Q ss_pred CCCCEEEEEEcceEEEEEEcCCC---cEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCccc
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLESG---KRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEGL 69 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~~g---~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~~ 69 (234)
++.+.+|++++|.+.+-..+ +| +...--.+++||+| ++ .+.|++ -++..++..+.+.+..
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmf----llP~gvpHs--P~r~~e~v~lviErkR 115 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSY----LLPGNVPHS--PVRFADTVGIVVEQDR 115 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEE----EECTTCCEE--EEECTTCEEEEEEECC
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEE----EcCCCCCcC--CcccCCcEEEEEEecC
Confidence 46789999999999887765 23 22223468999887 44 333443 3335788888886544
No 102
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=86.39 E-value=3 Score=29.30 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=38.6
Q ss_pred CCCCEEEEEEcceEEEEEEcC-CC-cEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcc
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLE-SG-KRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEG 68 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~-~g-~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~ 68 (234)
+..|.+|+|++|++.+..... ++ -..-.-.+++|+++= +-.. --.+-.|..+|.++.|...
T Consensus 48 ~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv----VPkG-veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 48 HSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN----VPAE-CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp SSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE----ECTT-CEEEEEECTTCEEEEEEES
T ss_pred CCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE----eCCC-ccCcccCCCceEEEEEEeC
Confidence 356899999999998876632 11 112234689997762 2111 1244566789999988544
No 103
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=86.22 E-value=3.9 Score=29.91 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEcc-ceeEEEeCccc
Q psy8820 3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVR-DSELAKLPEGL 69 (234)
Q Consensus 3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~-~~~l~~i~~~~ 69 (234)
++.+.+|++++|.+.+-..+ +|+. .--.+++||+| ++ .+.|+ +.+|.. ++..+.+.+..
T Consensus 53 h~~dE~FyvlkG~m~i~v~d-~g~~-~~v~l~eGE~f----~lP~gvpH--~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 53 DPLEEFFYQLRGNAYLNLWV-DGRR-ERADLKEGDIF----LLPPHVRH--SPQRPEAGSACLVIERQR 113 (174)
T ss_dssp CSSCEEEEEEESCEEEEEEE-TTEE-EEEEECTTCEE----EECTTCCE--EEEBCCTTCEEEEEEECC
T ss_pred CCCceEEEEEeeEEEEEEEc-CCce-eeEEECCCCEE----EeCCCCCc--CccccCCCCEEEEEEeCC
Confidence 36789999999999887664 3432 23469999887 34 23344 333455 77887775543
No 104
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=85.48 E-value=4 Score=27.25 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEE
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAK 64 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~ 64 (234)
+.+.+++|++|++.+... |+ ...+++||.+= +=.+.++ ++.+.+++.++.
T Consensus 55 ~~~e~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~---ip~~~~H--~~~~~~~~~~~~ 104 (114)
T 3fjs_A 55 AGPSTIQCLEGEVEIGVD---GA---QRRLHQGDLLY---LGAGAAH--DVNAITNTSLLV 104 (114)
T ss_dssp SSCEEEEEEESCEEEEET---TE---EEEECTTEEEE---ECTTCCE--EEEESSSEEEEE
T ss_pred CCcEEEEEEECEEEEEEC---CE---EEEECCCCEEE---ECCCCcE--EEEeCCCcEEEE
Confidence 356899999999988763 32 24689998762 1123344 456667776544
No 105
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=84.55 E-value=1.6 Score=29.80 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
+.+.+++|++|++.+.. +|+. ..+++||++=- =.+.++..+... +++.++.+
T Consensus 58 ~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v~i---p~g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVST---DGET---VTAGPGEIVYM---PKGETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEE---EEECTTCEEEE---CTTCEEEEEEEE-EEEEEEEE
T ss_pred CCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE---CCCCEEEEEcCC-CCeEEEEE
Confidence 45789999999998876 3533 35999998731 133444443332 44554443
No 106
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=80.85 E-value=2.4 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
.+.+++|++|++.+.. +|+. ..+++||+| .+ .+.+...+.. +++.++.+
T Consensus 84 ~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i----~iP~G~~h~~~n~--~~a~~l~V 133 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII---DGRK---VSASSGELI----FIPKGSKIQFSVP--DYARFIYV 133 (151)
T ss_dssp SEEEEEEEEEEEEEEE---TTEE---EEEETTCEE----EECTTCEEEEEEE--EEEEEEEE
T ss_pred CcEEEEEEEeEEEEEE---CCEE---EEEcCCCEE----EECCCCEEEEEeC--CCEEEEEE
Confidence 5678899999998875 4533 459999987 23 2344444433 56665555
No 107
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=80.41 E-value=2.6 Score=30.84 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+....++|. ....+++||++
T Consensus 61 a~E~~yVl~G~~~v~v~~~~~~--~~~~l~~GDv~ 93 (178)
T 1dgw_A 61 SDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAI 93 (178)
T ss_dssp SEEEEEEEESEEEEEEEETTEE--EEEEEETTEEE
T ss_pred CCEEEEEEeEEEEEEEEeCCCc--EEEEECCCCEE
Confidence 5789999999999988766553 34589999987
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=80.29 E-value=5 Score=25.61 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=32.7
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCc
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPE 67 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~ 67 (234)
..+++|++|.+.+... ++. ..+.+||++ ++ .+.++.... .+++.++.+..
T Consensus 51 ~e~~~v~~G~~~~~~~---~~~---~~l~~Gd~~----~ip~~~~H~~~~--~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR---DQN---ITLQAGEMY----VIPKGVEHKPMA--KEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECS---SCE---EEEETTEEE----EECTTCCBEEEE--EEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC---CEE---EEEcCCCEE----EECCCCeEeeEc--CCCCEEEEEEc
Confidence 6899999999987653 333 358899875 33 344554433 46777777653
No 109
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=79.73 E-value=2.3 Score=28.95 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG 40 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 40 (234)
.+.++.|++|++.+... +|.. ..+++||.|-
T Consensus 61 ~~E~~~iLeG~~~lt~d--dG~~---~~l~aGD~~~ 91 (116)
T 3es4_A 61 LEETFVVVEGEALYSQA--DADP---VKIGPGSIVS 91 (116)
T ss_dssp EEEEEEEEECCEEEEET--TCCC---EEECTTEEEE
T ss_pred CcEEEEEEEeEEEEEeC--CCeE---EEECCCCEEE
Confidence 34899999999987643 4643 3599999884
No 110
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=79.71 E-value=3.4 Score=35.87 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+....++|+......+.+||+|
T Consensus 415 A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 415 AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 57899999999999888888877777899999988
No 111
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=79.42 E-value=9.7 Score=24.93 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|.+.+... |+. ..+.+||++ ++ .+.++. ..+.+++.++.+
T Consensus 60 ~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~----~ip~~~~H~--~~~~~~~~~~~v 109 (115)
T 1yhf_A 60 GDAMVTILSGLAEITID---QET---YRVAEGQTI----VMPAGIPHA--LYAVEAFQMLLV 109 (115)
T ss_dssp SEEEEEEEESEEEEEET---TEE---EEEETTCEE----EECTTSCEE--EEESSCEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC---CEE---EEECCCCEE----EECCCCCEE--EEECCCceEEEE
Confidence 46799999999987753 332 468999886 23 233443 445567666554
No 112
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=78.80 E-value=5.9 Score=28.89 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=36.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|.....- -...+.+++|++|.+++.....++ .....+++||++-
T Consensus 46 ~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~---~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 46 YCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG---RDTYKLDQGDAIK 94 (178)
T ss_dssp EEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTE---EEEEEEETTEEEE
T ss_pred EEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCC---cEEEEECCCCEEE
Confidence 678888876544 456789999999999998765443 3356899999764
No 113
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=78.57 E-value=9.8 Score=24.96 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=32.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|.+.+.. +|+ ...+.+||++ .+ .+.++ +..+.+++.++.+
T Consensus 54 ~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~----~ip~~~~H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 54 HSQVSYVVEGEFHVNV---DGV---IKVLTAGDSF----FVPPHVDH--GAVCPTGGILIDT 103 (116)
T ss_dssp SEEEEEEEEECEEEEE---TTE---EEEECTTCEE----EECTTCCE--EEEESSCEEEEEE
T ss_pred cceEEEEEeeEEEEEE---CCE---EEEeCCCCEE----EECcCCce--eeEeCCCcEEEEE
Confidence 5678999999998776 332 3469999885 22 23344 3455567777666
No 114
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=77.92 E-value=12 Score=25.18 Aligned_cols=45 Identities=24% Similarity=0.461 Sum_probs=33.7
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
...+++|..+-.- - ..+.+++|++|.+.+.. +| + ...+++||++-
T Consensus 44 ~~~~~pG~~~~~H-~-~~~E~~~Vl~G~~~~~~---~g--~--~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-M-AVDDVMIVLEGRLSVST---DG--E--TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-C-SSEEEEEEEEEEEEEEE---TT--E--EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-C-CCCEEEEEEeCEEEEEE---CC--E--EEEECCCCEEE
Confidence 3678888876554 3 78899999999999976 22 2 34689999764
No 115
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=77.91 E-value=4.3 Score=34.82 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+.....+|.......+++||+|
T Consensus 359 a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 359 ANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 57899999999999888777766666789999987
No 116
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=77.88 E-value=4.3 Score=35.11 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+.....+|.......+++||+|
T Consensus 393 a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 393 AHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 57899999999999888777776666789999987
No 117
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=77.36 E-value=4.3 Score=34.64 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|+..+....++|....-+.+.+||+|
T Consensus 343 A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 343 SHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 57899999999999998888866666789999998
No 118
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=77.34 E-value=7.4 Score=25.29 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=34.1
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCccc
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEGL 69 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~~ 69 (234)
+.+++|++|++.+.... ++. ..+++||++ .+ .+.++.... .+++.++.+....
T Consensus 49 ~E~~~Vl~G~~~~~~~~--~~~---~~l~~Gd~~----~ip~~~~H~~~~--~~~~~~l~i~~~~ 102 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFAD--GGS---MTIREGEMA----VVPKSVSHRPRS--ENGCSLVLIELSD 102 (107)
T ss_dssp CEEEEESSSCEEEEETT--SCE---EEECTTEEE----EECTTCCEEEEE--EEEEEEEEEECC-
T ss_pred CEEEEEEeCEEEEEECC--CcE---EEECCCCEE----EECCCCcEeeEe--CCCeEEEEEECCC
Confidence 78999999999877532 233 358999886 33 344554443 3567777665443
No 119
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=76.76 E-value=3.3 Score=28.80 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG 40 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 40 (234)
+.+.+++|++|++.+... |+.. .+++||.|=
T Consensus 74 ~~~E~~~VLeG~~~l~~~---g~~~---~l~~GD~i~ 104 (133)
T 2pyt_A 74 NYDEIDMVLEGELHVRHE---GETM---IAKAGDVMF 104 (133)
T ss_dssp SSEEEEEEEEEEEEEEET---TEEE---EEETTCEEE
T ss_pred CCCEEEEEEECEEEEEEC---CEEE---EECCCcEEE
Confidence 357899999999988763 4333 699999873
No 120
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=76.48 E-value=3.2 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=22.9
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG 40 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 40 (234)
+.++.|++|++.+.. .+|+.. .+++||++-
T Consensus 69 ~E~~~Vl~G~~~l~~--~~g~~~---~l~~GD~~~ 98 (123)
T 3bcw_A 69 IEYCHIIEGEARLVD--PDGTVH---AVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEEEEEEEC--TTCCEE---EEETTCEEE
T ss_pred cEEEEEEEEEEEEEE--CCCeEE---EECCCCEEE
Confidence 789999999998764 245433 589999873
No 121
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=76.38 E-value=4.7 Score=34.76 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+.....+|+...-..+++||+|
T Consensus 388 a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 388 ANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 57899999999999888777765555789999987
No 122
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=76.23 E-value=6.5 Score=28.54 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
.++.+++|++|++.+... |+ ...+++||+|=- =.+.++...-..-+++.++.+
T Consensus 109 ~gEE~~yVLeG~v~vtl~---g~---~~~L~~Gds~~i---P~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVC---KN---KFLSVKGSTFQI---PAFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp SEEEEEEEEESEEEEEET---TE---EEEEETTCEEEE---CTTCEEEEEECSSSCEEEEEE
T ss_pred CceEEEEEEEeEEEEEEC---CE---EEEEcCCCEEEE---CCCCCEEEEECCCCCEEEEEE
Confidence 356799999999998873 32 236999998731 124455554444555555544
No 123
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.19 E-value=14 Score=24.42 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=42.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA 182 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~ 182 (234)
..+++|..+-.- -.....+++|++|.+++.... + ...+++||++=.- .+. .-++.+.+++.++
T Consensus 41 ~~l~~G~~~~~H-~H~~~e~~~Vl~G~~~~~i~~-----~--~~~l~~Gd~i~ip---~~~--~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 41 MVLPAGKQVGSH-SVAGPSTIQCLEGEVEIGVDG-----A--QRRLHQGDLLYLG---AGA--AHDVNAITNTSLL 103 (114)
T ss_dssp EEECTTCEEEEE-CCSSCEEEEEEESCEEEEETT-----E--EEEECTTEEEEEC---TTC--CEEEEESSSEEEE
T ss_pred EEECCCCccCce-eCCCcEEEEEEECEEEEEECC-----E--EEEECCCCEEEEC---CCC--cEEEEeCCCcEEE
Confidence 678899887665 566679999999999997632 1 3578999866422 133 3345566776544
No 124
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=75.29 E-value=3.6 Score=27.03 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=23.1
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+.+.+++|++|++.+... +|+. ..+++||++
T Consensus 48 ~~~E~~~Vl~G~~~~~i~--~g~~---~~l~~GD~i 78 (101)
T 1o5u_A 48 DTNETCYILEGKVEVTTE--DGKK---YVIEKGDLV 78 (101)
T ss_dssp SSCEEEEEEEEEEEEEET--TCCE---EEEETTCEE
T ss_pred CceEEEEEEeCEEEEEEC--CCCE---EEECCCCEE
Confidence 357899999999988763 2433 359999987
No 125
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=75.14 E-value=5.9 Score=33.87 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+-+|++|++++..-.++|+......+.+||+|
T Consensus 344 A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 344 ANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 57899999999999988888877777899999988
No 126
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=73.70 E-value=6.6 Score=33.85 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+.+|++|++++..-.++|+...-..+.+||+|
T Consensus 379 A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 379 ANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 67899999999999988888876666789999988
No 127
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=71.83 E-value=5 Score=29.31 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
+..+++|++|++.+... +|+. ..+++||++ - -.+.++......-++++++.+
T Consensus 99 ~eE~~~VLeGel~l~ld--~ge~---~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 99 SIDYGIVLEGEIELELD--DGAK---RTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEEEEEESCEEEECG--GGCE---EEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred ceEEEEEEeCEEEEEEC--CCeE---EEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 34688999999988753 2433 359999997 2 245566555444556666555
No 128
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=71.44 E-value=11 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEE-EccceeEEEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVM-AVRDSELAKL 65 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~-A~~~~~l~~i 65 (234)
+++.+++|++|++.+.... +| ......+++||++= +=.+.|+..... ..+++.++.+
T Consensus 139 ~~~E~~~Vl~G~~~~~~~~-~~-~~~~~~l~~GD~~~---~~~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 139 AGNEFLFVLEGEIHMKWGD-KE-NPKEALLPTGASMF---VEEHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp SSCEEEEEEESCEEEEESC-TT-SCEEEEECTTCEEE---ECTTCCEEEEESTTSCCEEEEEE
T ss_pred CCeEEEEEEeeeEEEEECC-cC-CcccEEECCCCEEE---eCCCCceEEEecCCCCCeEEEEE
Confidence 4568999999999887643 11 11334699999872 112345443332 2245655543
No 129
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=70.65 E-value=8.1 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=30.2
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+.+|++|++++..-.++|+...-..+.+||+|
T Consensus 344 A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVf 378 (465)
T 3qac_A 344 AHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLV 378 (465)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEE
Confidence 57889999999999888888876666789999988
No 130
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=70.17 E-value=3.8 Score=27.33 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.4
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG 40 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG 40 (234)
+.+.+++|++|++.+.... +. .-..+++||++=
T Consensus 52 ~~~E~~~Vl~G~~~l~~~~---~~-~~~~l~~Gd~i~ 84 (112)
T 2opk_A 52 PQDEWVMVVSGSAGIECEG---DT-APRVMRPGDWLH 84 (112)
T ss_dssp SSEEEEEEEESCEEEEETT---CS-SCEEECTTEEEE
T ss_pred CccEEEEEEeCeEEEEECC---EE-EEEEECCCCEEE
Confidence 4678999999999887642 22 013589998873
No 131
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=69.98 E-value=18 Score=23.65 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=37.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|..+-.- ......+++|++|.+.+.... ....+.+||++=-- .+.+..+ .+.+++.++.+
T Consensus 43 ~~~~~g~~~~~H-~h~~~e~~~vl~G~~~~~i~~-------~~~~l~~Gd~i~i~---~~~~H~~--~~~~~~~~~~i 107 (114)
T 2ozj_A 43 FSFADGESVSEE-EYFGDTLYLILQGEAVITFDD-------QKIDLVPEDVLMVP---AHKIHAI--AGKGRFKMLQI 107 (114)
T ss_dssp EEEETTSSCCCB-CCSSCEEEEEEEEEEEEEETT-------EEEEECTTCEEEEC---TTCCBEE--EEEEEEEEEEE
T ss_pred EEECCCCccccE-ECCCCeEEEEEeCEEEEEECC-------EEEEecCCCEEEEC---CCCcEEE--EeCCCcEEEEE
Confidence 345566544333 445678999999999987531 13568999865422 2344333 23345555543
No 132
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=69.87 E-value=19 Score=29.25 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=35.4
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...-.--......+++|++|.+++...+.+| +.....+++||++=
T Consensus 57 ~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g--~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 57 MSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEG--KVEIADVDKGGLWY 107 (361)
T ss_dssp EEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTS--CEEEEEEETTEEEE
T ss_pred EEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCC--cEEEEEEcCCCEEE
Confidence 5777887654320333789999999999998766544 23346899999653
No 133
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=69.68 E-value=6.9 Score=32.70 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCEEEEEEcceEEEEEEcC------CCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLE------SGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~------~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
++.+++|++|+.++..-.+ +|.......+.+||+|= + -.-......+..+..++.+
T Consensus 260 A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~v----v-P~G~~h~~~n~~~l~~l~f 321 (397)
T 2phl_A 260 AIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFV----I-PAAYPVAIKATSNVNFTGF 321 (397)
T ss_dssp CEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEE----E-CTTCCEEEEESSSEEEEEE
T ss_pred CCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEE----E-CCCCeEEEEeCCCeEEEEE
Confidence 5789999999998887766 56567778899999982 1 1113445556667777766
No 134
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=69.62 E-value=10 Score=25.29 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=31.3
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
..+|+|++|++.+.. .+|+. ..+++||++= +=.+.++.......+++.++.+
T Consensus 61 ~e~~~Vl~G~~~~~~--~~~~~---~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 61 QDTWTVISGEAEYHQ--GNGIV---THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEEEECEEEEEC--STTCE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred eEEEEEEEeEEEEEE--CCCeE---EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 578899999998754 13433 3589998752 2234555544433445555544
No 135
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=69.60 E-value=15 Score=24.45 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=30.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccc-eeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRD-SELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~-~~l~~i 65 (234)
...+++|++|++.+... |+. ..+++||++ .+ .+.++. ..+.++ +.++.+
T Consensus 61 ~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~----~ip~~~~H~--~~~~~~~~~~l~v 111 (126)
T 4e2g_A 61 HEQAGVMLEGTLELTIG---EET---RVLRPGMAY----TIPGGVRHR--ARTFEDGCLVLDI 111 (126)
T ss_dssp SEEEEEEEEECEEEEET---TEE---EEECTTEEE----EECTTCCEE--EECCTTCEEEEEE
T ss_pred CceEEEEEEeEEEEEEC---CEE---EEeCCCCEE----EECCCCcEE--eEECCCCEEEEEE
Confidence 46799999999988763 322 468999876 22 233443 344455 655544
No 136
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=69.02 E-value=21 Score=24.99 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=42.3
Q ss_pred EEecCCCCceEEEEEeCeEEEEEecCC-CCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 116 VREEVVEDNKLIYVIAGSLFITQKSSD-GSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 116 ~~~~g~~~~~~y~I~~G~v~v~~~~~~-g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
++. -+..|.+|+|++|.+.+...+.. +..+.....++||+++---. |. -.+-.|..+|.++.|...
T Consensus 44 ~h~-H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk---Gv--eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEI-HHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA---EC--WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEE-ESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT---TC--EEEEEECTTCEEEEEEES
T ss_pred hcc-CCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC---Cc--cCcccCCCceEEEEEEeC
Confidence 344 67789999999999999876421 11123345679998765321 11 234456788888888665
No 137
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=68.75 E-value=30 Score=24.97 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=33.8
Q ss_pred cccceeeeecC-CCE-EEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 101 GLDIRVEHIPG-GTC-LVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 101 ~l~~~~~~~~~-g~~-i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.+...+..+++ |.. =-.. ......+++|++|.+.+.... ..+.+.+||+|=
T Consensus 87 ~~~~~~v~lpP~G~~~~~~~-~h~gEE~~yVLeG~v~vtl~g-------~~~~L~~Gds~~ 139 (166)
T 2vpv_A 87 YFASGILKLPAISGQKKLSN-SFRTYITFHVIQGIVEVTVCK-------NKFLSVKGSTFQ 139 (166)
T ss_dssp SCEEEEEEECSSGGGCEEEE-CCSEEEEEEEEESEEEEEETT-------EEEEEETTCEEE
T ss_pred cceeEEEEECCCCCCCCCcc-CCCceEEEEEEEeEEEEEECC-------EEEEEcCCCEEE
Confidence 44444577888 542 1122 445678999999999998632 245789999765
No 138
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=68.46 E-value=15 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
..+.+++|++|++.+... |+ ...+++||++
T Consensus 67 ~~~E~~~Vl~G~~~~~~~---~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 67 YEEEAVYVLSGKGTLTME---ND---QYPIAPGDFV 96 (162)
T ss_dssp SCCEEEEEEESCEEEEET---TE---EEEECTTCEE
T ss_pred CCCEEEEEEEEEEEEEEC---CE---EEEeCCCCEE
Confidence 357899999999988753 32 2469999986
No 139
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=68.15 E-value=16 Score=29.93 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=35.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...-.- -.....+++|++|.+++...+.+| +.....+++||++=
T Consensus 84 ~~l~pg~~~~~H-~H~~~E~~~Vl~G~~~~~~~~~~g--~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 84 MRLKPGAIRELH-WHKEAEWAYMIYGSARVTIVDEKG--RSFIDDVGEGDLWY 133 (385)
T ss_dssp EEECTTCEEEEE-EESSCEEEEEEEEEEEEEEECTTS--CEEEEEEETTEEEE
T ss_pred EEECCCCCCCCc-cCChheEEEEEeeeEEEEEEeCCC--cEEEEEeCCCCEEE
Confidence 677888855433 334789999999999998766544 33345789999653
No 140
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=67.90 E-value=28 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=28.3
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- --....+++|++|.+.+... + ....+.+||++=
T Consensus 58 ~~l~pG~~~~~H-~H~~~E~~~Vl~G~~~~~v~---g----~~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLE-RHQHAHGVMILKGRGHAMVG---R----AVSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCB-BCSSCEEEEEEEECEEEEET---T----EEEEECTTCEEE
T ss_pred EEECCCCccCce-eCCCcEEEEEEeCEEEEEEC---C----EEEEeCCCCEEE
Confidence 345555543322 33456788999999998752 2 145788998663
No 141
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=67.72 E-value=18 Score=25.08 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=33.0
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
.+.+++|++|++.+......+....-..+.+||++= +=.+.++......-+++.++.+
T Consensus 64 ~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~---ip~g~~H~~~n~~~~~~~~l~i 121 (148)
T 2oa2_A 64 LDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL---IPAGTWHNVRNTGNRPLKLYSI 121 (148)
T ss_dssp CEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE---ECTTCEEEEEECSSSCEEEEEE
T ss_pred CcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE---ECCCCcEEEEECCCCCEEEEEE
Confidence 358999999999888764322111124689998751 1134444444333345555444
No 142
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=67.32 E-value=21 Score=30.52 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=35.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|.++-.=-......+++|++|..++.....+| +......+++||++
T Consensus 343 v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G-~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 343 GSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNG-ERVFDGELQEGRVL 393 (476)
T ss_dssp EEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEE
T ss_pred EEecCCceecceECCCCCEEEEEEeCEEEEEEEecCC-CEEeeeEEcCCCEE
Confidence 5667776543221234689999999999998876655 34444568999976
No 143
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=67.16 E-value=10 Score=28.11 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=25.3
Q ss_pred CCEEEEEEcceEEEEEEcCC--CcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLES--GKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~--g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+.....+ |.+.....+++||+|
T Consensus 93 ~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 93 ATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp CCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred CCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 46899999999988765433 123335679999987
No 144
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=66.96 E-value=26 Score=30.44 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=37.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+.+|.++-.=-...++.+++|++|.+++...+.+| +......+.+||+|=
T Consensus 399 v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G-~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 399 GFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENG-DAILDQEVQQGQLFI 450 (531)
T ss_dssp EEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCC-cEEEEEEecCCeEEE
Confidence 5667777654321345789999999999998877665 455667899999773
No 145
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=66.65 E-value=21 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=35.1
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
+.+|+|++|+..+......|+ .....+++||++ ++ .+.++.......+++.++.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v----~ip~g~~H~~~N~g~~~~~~l~v 152 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVV----YVPPYWAHRTVNIGDEPFIFLAI 152 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCC-EEEEEECTTCEE----EECTTCEEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEE----EECCCCeEEEEECCcccEEEEEE
Confidence 589999999999888766564 334579999986 23 23344433333344555444
No 146
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=66.29 E-value=8.7 Score=29.64 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+.|.+.+|++|++.+.. +|+.. .+++||.|
T Consensus 64 p~dE~~~VleG~~~lt~---~g~~~---~~~~Gd~~ 93 (238)
T 3myx_A 64 PYTEMLVMHRGSVTLTS---GTDSV---TLSTGESA 93 (238)
T ss_dssp SSEEEEEEEESEEEEEE---TTEEE---EEETTCEE
T ss_pred CCcEEEEEEEeEEEEEC---CCeEE---EEcCCCEE
Confidence 56889999999998875 35333 38999887
No 147
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=66.00 E-value=14 Score=26.85 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=38.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~ 183 (234)
...+++|...-.- ......+++|++|.+.+...+ + + ...+++||.+ .- .+.+..+.-..-++++++.
T Consensus 83 ~v~l~PG~~~~~H-~H~~eE~~~VLeGel~l~ld~--g--e--~~~L~~GDsi-~~---~g~~H~~~N~g~~~ar~l~ 149 (172)
T 3es1_A 83 VVDMLPGKESPMH-RTNSIDYGIVLEGEIELELDD--G--A--KRTVRQGGII-VQ---RGTNHLWRNTTDKPCRIAF 149 (172)
T ss_dssp EEEECTTCBCCCB-CCSEEEEEEEEESCEEEECGG--G--C--EEEECTTCEE-EE---CSCCBEEECCSSSCEEEEE
T ss_pred EEEECCCCCCCCe-ecCceEEEEEEeCEEEEEECC--C--e--EEEECCCCEE-Ee---CCCcEEEEeCCCCCEEEEE
Confidence 3677887643211 233456779999999997532 2 1 3568999987 32 2444433322234455444
No 148
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=65.34 E-value=23 Score=30.64 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=33.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|.++-.=-......+++|++|.+++.....+| +......+.+||+|
T Consensus 377 v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G-~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 377 GNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNG-NRVYDEELQEGHVL 427 (510)
T ss_dssp EEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEE
T ss_pred EEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCC-CEEEeEEEcCCcEE
Confidence 3455565432211234689999999999998876665 34444568999976
No 149
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=65.34 E-value=23 Score=23.50 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=44.6
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC-eEEEEe-
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP-ATIAWL- 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i- 184 (234)
..+++|..+-.- -.....+++|++|.+.+.... ....+.+||++=.- .+.+ ..+.+.++ +.++.+
T Consensus 46 ~~~~pg~~~~~H-~H~~~e~~~vl~G~~~~~~~~-------~~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 46 VRIEPNTEMPAH-EHPHEQAGVMLEGTLELTIGE-------ETRVLRPGMAYTIP---GGVR--HRARTFEDGCLVLDIF 112 (126)
T ss_dssp EEECTTCEEEEE-CCSSEEEEEEEEECEEEEETT-------EEEEECTTEEEEEC---TTCC--EEEECCTTCEEEEEEE
T ss_pred EEECCCCcCCCc-cCCCceEEEEEEeEEEEEECC-------EEEEeCCCCEEEEC---CCCc--EEeEECCCCEEEEEEE
Confidence 678888876544 455688999999999997632 12578999865321 2333 33344444 554433
Q ss_pred --CHHhHHHHH
Q psy8820 185 --PQDDCSTLI 193 (234)
Q Consensus 185 --~~~~~~~l~ 193 (234)
++++|...+
T Consensus 113 ~p~~~d~~~~~ 123 (126)
T 4e2g_A 113 SPPREDYARMA 123 (126)
T ss_dssp ESCCHHHHHHH
T ss_pred CCCCcchhhhh
Confidence 334555444
No 150
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=64.41 E-value=21 Score=22.41 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=30.1
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
+.+++|++|++.+... ++ ...+++||++ ++ .+.++.......+++.++.+
T Consensus 50 ~e~~~v~~G~~~~~~~---~~---~~~l~~Gd~~----~ip~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 50 DKVYYALEGEVVVRVG---EE---EALLAPGMAA----FAPAGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEEEEESCEEEEET---TE---EEEECTTCEE----EECTTSCEEEECCSSSCEEEEEE
T ss_pred cEEEEEEeCEEEEEEC---CE---EEEeCCCCEE----EECCCCcEEeEeCCCCCEEEEEE
Confidence 4689999999987653 32 2468999886 22 23444443333345555444
No 151
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=64.06 E-value=27 Score=22.66 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=41.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|..+-.- -.....+++|++|.+.+... + + ...+.+||++=.- .+.+ ..+.+.+++.++.+
T Consensus 45 ~~~~~g~~~~~H-~H~~~e~~~vl~G~~~~~~~---~--~--~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 45 FSLDKGQEIGRH-SSPGDAMVTILSGLAEITID---Q--E--TYRVAEGQTIVMP---AGIP--HALYAVEAFQMLLV 109 (115)
T ss_dssp EEECTTCEEEEE-CCSSEEEEEEEESEEEEEET---T--E--EEEEETTCEEEEC---TTSC--EEEEESSCEEEEEE
T ss_pred EEECCCCccCCE-ECCCcEEEEEEeCEEEEEEC---C--E--EEEECCCCEEEEC---CCCC--EEEEECCCceEEEE
Confidence 577888876544 44567999999999998752 2 1 2568899876421 1333 33445556666544
No 152
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=63.50 E-value=25 Score=30.25 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=34.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|.++-.=-....+.+++|++|.+++.....+| +......+++||+|=
T Consensus 372 v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g-~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 372 VVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQG-NAVFDGELRRGQLLV 423 (493)
T ss_dssp EEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCC-CEEEeEEEcCCCEEE
Confidence 4556666433221334689999999999998876655 333335689999763
No 153
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=63.39 E-value=28 Score=22.61 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=41.3
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
..+++|..+-.- -.....+++|++|.+.+... + + ...+.+||++=.- .+.+ ..+.+.+++.++.+
T Consensus 39 ~~~~pg~~~~~H-~H~~~e~~~vl~G~~~~~~~---~--~--~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 39 IWFDKGAEGYVH-AHRHSQVSYVVEGEFHVNVD---G--V--IKVLTAGDSFFVP---PHVD--HGAVCPTGGILIDT 103 (116)
T ss_dssp EEECTTEEEEEE-CCSSEEEEEEEEECEEEEET---T--E--EEEECTTCEEEEC---TTCC--EEEEESSCEEEEEE
T ss_pred EEECCCCcCCcE-ECCcceEEEEEeeEEEEEEC---C--E--EEEeCCCCEEEEC---cCCc--eeeEeCCCcEEEEE
Confidence 567788764333 44477899999999998762 2 1 3568999975321 1333 33455567777665
No 154
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=63.11 E-value=17 Score=23.41 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... ++ ...+++||++= +=.+.++.......+++.++.+
T Consensus 44 ~~e~~~vl~G~~~~~~~---~~---~~~l~~Gd~~~---i~~~~~H~~~~~~~~~~~~~~v 95 (113)
T 2gu9_A 44 ADQWLFVVDGAGEAIVD---GH---TQALQAGSLIA---IERGQAHEIRNTGDTPLKTVNF 95 (113)
T ss_dssp CEEEEEEEECCEEEEET---TE---EEEECTTEEEE---ECTTCCEEEECCSSSCEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC---CE---EEEeCCCCEEE---ECCCCcEEeEcCCCCCEEEEEE
Confidence 46799999999988763 32 24689998762 1134444443333344554444
No 155
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=63.02 E-value=34 Score=24.44 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=33.6
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEE-ccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMA-VRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A-~~~~~l~~i 65 (234)
...+++|++|++.+... |+ ...+++||++= +-.+.++...... .+++.++.+
T Consensus 76 ~~E~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 76 HTHVVMVVRGHAEVVLD---DR---VEPLTPLDCVY---IAPHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp SCEEEEEEESEEEEEET---TE---EEEECTTCEEE---ECTTCCEEEEEESSSCCEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC---CE---EEEECCCCEEE---ECCCCcEEEEeCCCCCCEEEEEE
Confidence 56799999999987753 32 34689998862 2235566555444 455665555
No 156
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=62.90 E-value=38 Score=24.92 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=34.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCC--CCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSD--GSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~--g~~~~~~~~~~~g~~~G 159 (234)
..+++|...-.--......+++|++|.+++...+.+ + .+.....+++||++-
T Consensus 77 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~-~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 77 VDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSG-NKLYSRVVRAGETFV 130 (201)
T ss_dssp EEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGT-TCEEEEEEETTCEEE
T ss_pred EEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCC-CeEEEEEECCCCEEE
Confidence 677888754322133357999999999999765432 1 233456789999764
No 157
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=62.09 E-value=18 Score=25.72 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=21.8
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+.+++|++|++.+... ++ ...+++||++
T Consensus 66 eE~~~Vl~G~~~~~~~---~~---~~~l~~GD~i 93 (163)
T 3i7d_A 66 DEFVMVTEGALVLVDD---QG---EHPMVPGDCA 93 (163)
T ss_dssp CEEEEEEESCEEEEET---TE---EEEECTTCEE
T ss_pred cEEEEEEECEEEEEEC---CE---EEEeCCCCEE
Confidence 6899999999988763 32 3469999886
No 158
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=59.85 E-value=23 Score=25.94 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=34.1
Q ss_pred eeecCCCEEE-------EecCC--CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLV-------REEVV--EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~-------~~~g~--~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...- +. -. ....+++|++|...+......| +.....+++||++=
T Consensus 72 ~~l~PG~~~~E~~~~~~H~-H~~~~~~E~~~Vl~G~~~~~i~~~~g--~~~~~~l~~GD~v~ 130 (190)
T 1x82_A 72 TVLYPGKVGKEFFFTKGHF-HAKLDRAEVYVALKGKGGMLLQTPEG--DAKWISMEPGTVVY 130 (190)
T ss_dssp EEECCCEETTEECBCCCBB-CSSTTCCEEEEEEESCEEEEEECTTC--CEEEEEECTTCEEE
T ss_pred EEECCCcCCCcccCCCCeE-CCCCCCCEEEEEEcCEEEEEEcCcCC--cEEEEEECCCcEEE
Confidence 6778887521 11 11 2369999999999998765443 44567899999763
No 159
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=59.55 E-value=42 Score=23.69 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=27.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|...-.- --....+++|++|.+++... + ....+.+||++
T Consensus 49 ~~l~pG~~~~~H-~H~~~E~~~Vl~G~~~v~v~---g----~~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLE-RHAHVHAVMIHRGHGQCLVG---E----TISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCB-BCSSCEEEEEEEEEEEEEET---T----EEEEEETTCEE
T ss_pred EEECCCCccCce-eCCCcEEEEEEeCEEEEEEC---C----EEEEeCCCCEE
Confidence 345555543222 33456788999999999752 2 13567888865
No 160
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=59.54 E-value=11 Score=32.02 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=33.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCC-------cc--EEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGS-------ND--VHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~-------~~--~~~~~~~~g~~~G 159 (234)
..+.+|.+...--.-.+..+.+|++|..++..-..++. +. .....+.+||+|=
T Consensus 286 v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~v 347 (445)
T 2cav_A 286 LQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIV 347 (445)
T ss_dssp EEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEE
T ss_pred EEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEE
Confidence 45555554432214567899999999999987665531 12 3566799999773
No 161
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=59.29 E-value=42 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEc-cceeEEEeCcccccc
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAV-RDSELAKLPEGLCDH 72 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~-~~~~l~~i~~~~f~~ 72 (234)
...++++++|++++... +|++...-.+++... | +.-..--..+..+. ++|.++.+....|+.
T Consensus 56 ~~q~li~l~Gs~~v~ld--Dg~~~~~~~L~~~~~-g---L~IppgvWh~~~~~s~~avllvlas~~Yd~ 118 (141)
T 2pa7_A 56 LEQVLVCLNGSCRVILD--DGNIIQEITLDSPAV-G---LYVGPAVWHEMHDFSSDCVMMVLASDYYDE 118 (141)
T ss_dssp CCEEEEEEESCEEEEEE--CSSCEEEEEECCTTE-E---EEECTTCEEEEECCCTTCEEEEEESSCCCG
T ss_pred ceEEEEEEccEEEEEEE--CCcEEEEEEECCCCc-E---EEeCCCEEEEEEEcCCCeEEEEECCCCcCH
Confidence 35799999999999885 455444445666543 2 33233334455555 458999998777754
No 162
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=59.15 E-value=17 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
..+++|++|++.+... ++ ...+.+||++
T Consensus 79 ~E~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 79 FEIYYILLGEGVFHDN---GK---DVPIKAGDVC 106 (133)
T ss_dssp EEEEEEEESEEEEEET---TE---EEEEETTEEE
T ss_pred cEEEEEEeCEEEEEEC---CE---EEEeCCCcEE
Confidence 5789999999987753 32 3458999886
No 163
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=59.12 E-value=15 Score=23.36 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.1
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+++|++|++.+... +|. ....+.+||.+
T Consensus 41 e~~~Vl~G~~~~~~~--~g~--~~~~l~~Gd~~ 69 (97)
T 2fqp_A 41 VVVPMTTGPLLLETP--EGS--VTSQLTRGVSY 69 (97)
T ss_dssp EEEESSCEEEEEEET--TEE--EEEEECTTCCE
T ss_pred EEEEEeecEEEEEeC--CCC--EEEEEcCCCEE
Confidence 499999999987653 231 23469999987
No 164
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=58.91 E-value=18 Score=28.22 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=68.6
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch-----
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE----- 79 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~----- 79 (234)
++.+++|++|++.+.. +|+. ..+++||++= +=.+.|+.......++++++.+-+. +..+-...|.
T Consensus 84 ~ee~~~Vl~G~l~~~~---~~~~---~~L~~GD~~~---~~~~~~H~~~N~~~~~~~~l~v~~~-y~~~~g~~p~~~v~~ 153 (274)
T 1sef_A 84 IQTLVYVIDGRLRVSD---GQET---HELEAGGYAY---FTPEMKMYLANAQEADTEVFLYKKR-YQPLAGHQPYKVVGS 153 (274)
T ss_dssp EEEEEEEEESEEEEEC---SSCE---EEEETTEEEE---ECTTSCCEEEESSSSCEEEEEEEEE-CCCCTTCCCCCEEEE
T ss_pred ceEEEEEEEeEEEEEE---CCEE---EEECCCCEEE---ECCCCCEEEEeCCCCCEEEEEEEee-eeeCCCCCCcceeCC
Confidence 3578999999998875 3433 3599999863 2234455554444455665555311 1111000110
Q ss_pred -HHHH-HHHH--HHHHHHhCCC--CCccccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820 80 -QELI-HSSK--REFMEQLGVK--DFSGLDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA 152 (234)
Q Consensus 80 -~~l~-~~~~--~~l~~~l~~~--~~~~l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~ 152 (234)
+... .... .....+.-.. ....+......+++|..+-. . --....+++|++|...+.... ....+
T Consensus 154 ~~d~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H-~H~~~E~~yVl~G~~~~~i~~-------~~~~l 225 (274)
T 1sef_A 154 IHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIE-THVQEHGAYLISGQGMYNLDN-------EWYPV 225 (274)
T ss_dssp GGGSCCEEGGGCTTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCB-CCSCCEEEEEEECEEEEEETT-------EEEEE
T ss_pred hHHCCccccCCCCCeEEEEeCCcccCCCEEEEEEEECCCCccCcce-eccCeEEEEEEeCEEEEEECC-------EEEEE
Confidence 0000 0000 0000000000 01111122257788876533 2 335678899999999997632 13578
Q ss_pred CCCceEE
Q psy8820 153 FPGDMIG 159 (234)
Q Consensus 153 ~~g~~~G 159 (234)
++||++=
T Consensus 226 ~~GD~i~ 232 (274)
T 1sef_A 226 EKGDYIF 232 (274)
T ss_dssp ETTCEEE
T ss_pred CCCCEEE
Confidence 9999764
No 165
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=58.80 E-value=38 Score=28.78 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=35.3
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+.+|.+...--...+..+++|++|..++.....+| +...-..+.+||+|=
T Consensus 327 v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g-~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 327 GVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFG-QSVFDGEVREGQVLM 378 (459)
T ss_dssp EEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCC-CEEEeeEEeCCcEEE
Confidence 3455555443221345789999999999999877666 444445699999773
No 166
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=58.76 E-value=12 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
+++.+|+|++|.++.... +|+. ..+++||++
T Consensus 151 p~EEiy~VLsG~~e~~v~--~g~~---~~l~pGd~v 181 (217)
T 4b29_A 151 LPEELYSVVSGRALFHLR--NAPD---LMLEPGQTR 181 (217)
T ss_dssp SSEEEEEEEEECEEEEET--TSCC---EEECTTCEE
T ss_pred CCceEEEEEeCCEEEEEC--CCCE---EecCCCCEE
Confidence 467899999999977653 2322 358999875
No 167
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=58.55 E-value=25 Score=24.87 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... |+ ...+.+||++ ++ .+.++.......+++.++.+
T Consensus 64 ~~E~~~Vl~G~~~v~v~---g~---~~~l~~Gd~i----~ip~~~~H~~~n~g~~~~~~l~i 115 (156)
T 3kgz_A 64 HVHAVMIHRGHGQCLVG---ET---ISDVAQGDLV----FIPPMTWHQFRANRGDCLGFLCV 115 (156)
T ss_dssp SCEEEEEEEEEEEEEET---TE---EEEEETTCEE----EECTTCCEEEECCSSSCEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC---CE---EEEeCCCCEE----EECCCCcEEeEeCCCCCEEEEEE
Confidence 45788999999988753 33 3468999876 23 34455544444455554444
No 168
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=57.81 E-value=13 Score=30.29 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=39.2
Q ss_pred CCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCH--HhHHHHH
Q psy8820 121 VEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQ--DDCSTLI 193 (234)
Q Consensus 121 ~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~--~~~~~l~ 193 (234)
.+.+.+++|++|.+++.... .+ ...+++||++=-- .+.+ .++.+.++ ..++.+.. ..+..++
T Consensus 270 ~~~~~~~~vleG~~~i~i~g----~~--~~~l~~Gd~~~iP---ag~~--h~~~~~~~~~~~l~~~~g~~g~~~~~ 334 (350)
T 1juh_A 270 FPGACAFQVQEGRVVVQIGD----YA--ATELGSGDVAFIP---GGVE--FKYYSEAYFSKVLFVSSGSDGLDQNL 334 (350)
T ss_dssp CSSCEEEEEEESCEEEEETT----SC--CEEECTTCEEEEC---TTCC--EEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred CCCcEEEEEEeeEEEEEECC----eE--EEEeCCCCEEEEC---CCCC--EEEEecCCeEEEEEEecCccchhhee
Confidence 56778899999999998642 11 2478999876421 2443 44455544 67776665 5665553
No 169
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=57.70 E-value=40 Score=22.60 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=39.7
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEE-EeCccccccccCCCc
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELA-KLPEGLCDHLPRSPS 78 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~-~i~~~~f~~l~~~~p 78 (234)
+.+++|++|++.+... +++ ...+.+||++ ++ .+.++....... ++.++ .+....|.....+.|
T Consensus 65 ~E~~~vl~G~~~~~~~--~~~---~~~l~~Gd~~----~ip~g~~H~~~~~~~-~~~~l~~~~p~~~~~~~~~~~ 129 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYE--DIG---AVMLEAGGSA----FQPPGVRHRELRHSD-DLEVLEIVSPAGFATSVVDLE 129 (134)
T ss_dssp CEEEEEEESEEEEEET--TTE---EEEEETTCEE----ECCTTCCEEEEEECT-TCEEEEEESSTTCCEEECCCC
T ss_pred cEEEEEEeCEEEEEEC--CcE---EEEecCCCEE----EECCCCcEEeEeCCC-CeEEEEEECCCchheeehhcc
Confidence 6899999999988763 222 2468999876 33 344555444333 44544 666667766655555
No 170
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=57.37 E-value=49 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=36.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+.+|.+.----.-.+..+.+|++|.+++..-..+| +...-..+.+||+|=
T Consensus 363 v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g-~~~f~~~l~~GDV~v 414 (496)
T 3ksc_A 363 GSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNG-NTVFDGELEAGRALT 414 (496)
T ss_dssp EEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCC-cEEEEEEecCCeEEE
Confidence 5556666554331456789999999999999887765 334445799999763
No 171
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=57.02 E-value=27 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=37.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- -...+.+++|++|...+.....++ .....+++||++-
T Consensus 66 ~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~---~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 66 FKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDS---RDSYILEQGHAQK 114 (434)
T ss_dssp EEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSC---EEEEEEETTEEEE
T ss_pred EEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCC---CEEEEeCCCCEEE
Confidence 688889887766 677889999999999998765432 3456789999763
No 172
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=56.38 E-value=24 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+++|++|++.+... |+. ..+.+||++
T Consensus 126 ~~E~~~Vl~G~~~~~~~---~~~---~~l~~GD~i 154 (192)
T 1y9q_A 126 VIEYIHVLEGIMKVFFD---EQW---HELQQGEHI 154 (192)
T ss_dssp CEEEEEEEESCEEEEET---TEE---EEECTTCEE
T ss_pred CEEEEEEEEeEEEEEEC---CEE---EEeCCCCEE
Confidence 46899999999988763 422 369999986
No 173
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=56.37 E-value=26 Score=29.71 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=37.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- -...+.+++|++|...+.....++ .....+++||++-
T Consensus 91 ~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~---~~~~~l~~GDv~~ 139 (445)
T 2cav_A 91 YCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG---RDTYKLDQGDAIK 139 (445)
T ss_dssp EEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTE---EEEEEEETTEEEE
T ss_pred EEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCC---CEEEEecCCCEEE
Confidence 688888877666 667899999999999998665432 2567789999764
No 174
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=54.92 E-value=32 Score=28.79 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=36.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+..- -...+.+++|++|...+.....+ ......+++||++-
T Consensus 54 ~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~---~~~~~~l~~GDv~~ 102 (416)
T 1uij_A 54 FQSKPNTILLPH-HADADFLLFVLSGRAILTLVNND---DRDSYNLHPGDAQR 102 (416)
T ss_dssp EEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSS---CEEEEEECTTEEEE
T ss_pred EEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECC---CCeEEEecCCCEEE
Confidence 678888866655 66788999999999999865542 23346789999763
No 175
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=54.84 E-value=19 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=23.1
Q ss_pred CCEEEEEEcceEEEEEEcCCC---cEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESG---KRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g---~~~~~~~~~~G~~f 39 (234)
...+++|++|++.+.....++ .......+.+||++
T Consensus 61 ~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 61 CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred CCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 456899999999887754211 00123469999886
No 176
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=54.58 E-value=54 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=35.7
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+.+|.+.----.-.+..+.+|++|.+++..-..+| +......+.+||+|=
T Consensus 328 v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g-~~~f~~~l~~GDV~v 379 (466)
T 3kgl_A 328 GSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNG-DRVFDGQVSQGQLLS 379 (466)
T ss_dssp EEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCC-cEEEEeEecCCcEEE
Confidence 3445554443221346789999999999999887766 445566799999763
No 177
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=54.03 E-value=56 Score=23.21 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=32.0
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
...+++|..+-.- --....+++|++|.+.+.... ....+.+||++-
T Consensus 60 ~~~l~pG~~~~~H-~H~~~E~~~Vl~G~~~~~i~~-------~~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLE-RHEHTHVVMVVRGHAEVVLDD-------RVEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCB-BCSSCEEEEEEESEEEEEETT-------EEEEECTTCEEE
T ss_pred EEEECCCCCCCCc-cCCCcEEEEEEeCEEEEEECC-------EEEEECCCCEEE
Confidence 3577777755433 345788999999999987532 145789998763
No 178
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=54.01 E-value=54 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=32.0
Q ss_pred ceeeeecCCCEE--EEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 104 IRVEHIPGGTCL--VREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 104 ~~~~~~~~g~~i--~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.....+++|... ... -...+.+++|++|.+.+.... + ...+.+||++-
T Consensus 45 ~~~~~l~pG~~~~~~H~-H~~~eE~~~Vl~G~~~~~~~~-----~--~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHY-HMEQDEFVMVTEGALVLVDDQ-----G--EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEE-ESSCCEEEEEEESCEEEEETT-----E--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCcc-CCCCcEEEEEEECEEEEEECC-----E--EEEeCCCCEEE
Confidence 334677888744 233 333468999999999998632 1 35788998654
No 179
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=53.89 E-value=34 Score=28.76 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=39.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..++++..+... --.++.+++|++|...+.....++ .....+++||+|-
T Consensus 49 ~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~---~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 49 IEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNN---RKSFNLDEGHALR 97 (418)
T ss_dssp EEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSC---EEEEEEETTEEEE
T ss_pred EEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCC---EEEEEecCCCEEE
Confidence 567888888877 677899999999999998776543 4467899999873
No 180
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=53.36 E-value=21 Score=28.02 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch----
Q psy8820 4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE---- 79 (234)
Q Consensus 4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~---- 79 (234)
.++.|.+|++|++.+... +|++. .+++||+|=. =.+.++... ..++++++.+. ..|..+-...|.
T Consensus 89 ~~EEfiyVleG~l~l~l~--~g~~~---~L~~Gds~y~---p~~~~H~~~--N~~~Ar~l~V~-k~y~~~~g~~p~~~v~ 157 (266)
T 4e2q_A 89 DIERLIFVVEGAVTLTNT--SSSSK---KLTVDSYAYL---PPNFHHSLD--CVESATLVVFE-RRYEYLGSHTTELIVG 157 (266)
T ss_dssp TEEEEEEEEEECEEEEC----CCCE---EECTTEEEEE---CTTCCCEEE--ESSCEEEEEEE-EECCCCTTCCCCCEEE
T ss_pred CCeEEEEEEEEEEEEEEC--CCcEE---EEcCCCEEEE---CCCCCEEEE--eCCCEEEEEEE-eEeeeCCCCCCceeeC
Confidence 367899999999988753 14333 5899988621 123344333 35778887773 333443332221
Q ss_pred --HHH-HHHH-HHHHHHHhCCCCCcc-c--cceeeeecCCCEEE-EecCCCCceEEEEEeCeEEEEEecCCCCccEEEEE
Q psy8820 80 --QEL-IHSS-KREFMEQLGVKDFSG-L--DIRVEHIPGGTCLV-REEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFT 151 (234)
Q Consensus 80 --~~l-~~~~-~~~l~~~l~~~~~~~-l--~~~~~~~~~g~~i~-~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~ 151 (234)
+.+ .... -+++..++ +...+. . .-++.++++|..+- .+ -..-.+-++|++|...+.... .-..
T Consensus 158 ~~~dv~~~~~~g~~~~~r~-l~p~~~~~d~~~~~~t~~PG~~~p~~e-~H~~eh~~~vL~G~g~y~l~~-------~~~~ 228 (266)
T 4e2q_A 158 STDKQPLLETPGEVFELRK-LLPMSVAYDFNIHTMDFQPGEFLNVKE-VHYNQHGLLLLEGQGIYRLGD-------NWYP 228 (266)
T ss_dssp EGGGSCCBCCTTCCSEEEE-SSCCSTTCSEEEEEEEECTTCBCSSCC-CCSCCEEEEEEECEEEEEETT-------EEEE
T ss_pred cHhHCCCcccCCCcEEEEE-ccCcccccceEEEEEEECCCcCcCCce-EcccceEEEEEeceEEEEECC-------EEEE
Confidence 000 0000 00000000 111111 1 12237789998874 45 556669999999999887532 1345
Q ss_pred ECCCceE
Q psy8820 152 AFPGDMI 158 (234)
Q Consensus 152 ~~~g~~~ 158 (234)
+++||++
T Consensus 229 V~~GD~i 235 (266)
T 4e2q_A 229 VQAGDVI 235 (266)
T ss_dssp EETTCEE
T ss_pred ecCCCEE
Confidence 7889865
No 181
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=53.17 E-value=45 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=32.0
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|..+=.= ..+.+.+|+|++|.+++.... + + ...+++||++
T Consensus 137 v~l~PG~~yP~H-sHp~EEiy~VLsG~~e~~v~~--g-~---~~~l~pGd~v 181 (217)
T 4b29_A 137 GYWGPGLDYGWH-EHLPEELYSVVSGRALFHLRN--A-P---DLMLEPGQTR 181 (217)
T ss_dssp EEECSSCEEEEE-ECSSEEEEEEEEECEEEEETT--S-C---CEEECTTCEE
T ss_pred EEECCCCcCCCC-CCCCceEEEEEeCCEEEEECC--C-C---EEecCCCCEE
Confidence 677888764433 567889999999999987642 1 1 2457888865
No 182
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=53.12 E-value=19 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+|+|++|+..+....+++ .....+++||++
T Consensus 81 a~Ei~yVl~G~g~v~~v~~~~--~~~~~l~~GDv~ 113 (434)
T 2ea7_A 81 ADFLLVVLNGTAVLTLVNPDS--RDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEEEESEEEEEEECSSC--EEEEEEETTEEE
T ss_pred CceEEEEEecEEEEEEEeCCC--CEEEEeCCCCEE
Confidence 568999999999887765443 345679999987
No 183
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=52.92 E-value=20 Score=30.12 Aligned_cols=33 Identities=9% Similarity=0.252 Sum_probs=26.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|+..+....+++ .....+++||+|
T Consensus 64 A~ei~yV~~G~g~~g~V~~~~--~~~~~l~~GDv~ 96 (418)
T 3s7i_A 64 ADNILVIQQGQATVTVANGNN--RKSFNLDEGHAL 96 (418)
T ss_dssp EEEEEEEEESEEEEEEECSSC--EEEEEEETTEEE
T ss_pred CCeEEEEEEeeEEEEEEecCC--EEEEEecCCCEE
Confidence 567899999999887776655 346789999998
No 184
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=52.88 E-value=84 Score=25.85 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=53.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
+..+++|+..-.- -.....+|.|++|.-.+... + ..+.+++||+|.--+ .. ..+..+.+++.++.++
T Consensus 283 ~~~L~pG~~t~~h-Rht~s~Vy~V~eG~G~~~I~---~----~~~~w~~gD~fvvP~---w~--~h~~~n~~~a~Lf~~~ 349 (368)
T 3nw4_A 283 FHRLRAGTETATR-NEVGSTVFQVFEGAGAVVMN---G----ETTKLEKGDMFVVPS---WV--PWSLQAETQFDLFRFS 349 (368)
T ss_dssp EEEECTTCBCCCE-EESSCEEEEEEESCEEEEET---T----EEEEECTTCEEEECT---TC--CEEEEESSSEEEEEEE
T ss_pred eEEECCCCccCCe-eccccEEEEEEeCcEEEEEC---C----EEEEecCCCEEEECC---CC--cEEEEeCCCEEEEEEe
Confidence 3788888866554 56778999999999888752 2 236789999986432 22 3455667899999887
Q ss_pred HHhHHHHH
Q psy8820 186 QDDCSTLI 193 (234)
Q Consensus 186 ~~~~~~l~ 193 (234)
-.-+.+-+
T Consensus 350 D~Pl~~~L 357 (368)
T 3nw4_A 350 DAPIMEAL 357 (368)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHHh
Confidence 76655544
No 185
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=52.78 E-value=37 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEe
Q psy8820 122 EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGG 160 (234)
Q Consensus 122 ~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~ 160 (234)
+.+.++++++|.+.+...+. | ...-..+++||+|=.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~-g--~~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVD-G--RRERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEET-T--EEEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEcC-C--ceeeEEECCCCEEEe
Confidence 67899999999999987652 2 244467899998753
No 186
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=52.63 E-value=36 Score=22.53 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe--Cccccccc
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL--PEGLCDHL 73 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i--~~~~f~~l 73 (234)
.+|+|++|++.+... ++. ..+++||++ ++ .+.++.......+++.++.+ +...+..+
T Consensus 50 ~~~~vl~G~~~~~i~---~~~---~~l~~Gd~i----~i~~~~~H~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (125)
T 3cew_A 50 EIYGILSGKGFITID---GEK---IELQAGDWL----RIAPDGKRQISAASDSPIGFLCIQVKAGSLEGY 109 (125)
T ss_dssp EEEEEEEEEEEEEET---TEE---EEEETTEEE----EECTTCCEEEEEBTTBCEEEEEEEEETTCCCSC
T ss_pred EEEEEEeCEEEEEEC---CEE---EEeCCCCEE----EECCCCcEEEEcCCCCCEEEEEEEcCCcccccc
Confidence 467799999987763 322 468999876 23 34455444332344554433 44444444
No 187
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=52.50 E-value=61 Score=23.83 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=41.1
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEE--cCCeEEEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQS--RLPATIAW 183 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A--~~~~~~~~ 183 (234)
+..+++|..+-.- .-....+.+|++|.+. +.++ .+.+||++=.-. +. ..+..+ .++|.|+.
T Consensus 129 l~~~~pG~~~p~H-~H~g~E~~~VL~G~f~----de~~-------~~~~Gd~~~~p~---g~--~H~p~a~~~~gc~~l~ 191 (195)
T 2q1z_B 129 LLWIPGGQAVPDH-GHRGLELTLVLQGAFR----DETD-------RFGAGDIEIADQ---EL--EHTPVAERGLDCICLA 191 (195)
T ss_dssp EEEECTTCBCCCC-CCSSCEEEEEEESEEE----CSSS-------EEETTCEEEECS---SC--CCCCEECSSSCEEEEE
T ss_pred EEEECCCCCCCCc-CCCCeEEEEEEEEEEE----CCcE-------EECCCeEEEeCc---CC--ccCCEeCCCCCEEEEE
Confidence 3788888888776 6678899999999966 2222 478888764322 22 223344 67788776
Q ss_pred e
Q psy8820 184 L 184 (234)
Q Consensus 184 i 184 (234)
+
T Consensus 192 ~ 192 (195)
T 2q1z_B 192 A 192 (195)
T ss_dssp E
T ss_pred E
Confidence 4
No 188
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=52.49 E-value=31 Score=24.71 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=31.6
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... |+ ...+++||++= +=.+.++.......+++.++.+
T Consensus 73 ~~E~~~Vl~G~~~~~v~---g~---~~~l~~GD~i~---ip~g~~H~~~n~~~~~~~~l~i 124 (166)
T 3jzv_A 73 HAHGVMILKGRGHAMVG---RA---VSAVAPYDLVT---IPGWSWHQFRAPADEALGFLCM 124 (166)
T ss_dssp SCEEEEEEEECEEEEET---TE---EEEECTTCEEE---ECTTCCEEEECCTTSCEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC---CE---EEEeCCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 45688899999988653 43 34689999862 1234455544434445554444
No 189
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=52.42 E-value=66 Score=27.41 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=36.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+.+|.+.-.--.-.+..+.+|++|..++..-..+| +...-..+.+||+|=
T Consensus 328 v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g-~~~f~~~l~~GDVfv 379 (465)
T 3qac_A 328 GVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQG-QSVFDEELSRGQLVV 379 (465)
T ss_dssp EEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred EEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCC-cEEEEEEecCCeEEE
Confidence 5566666554321456789999999999998877765 444455699999773
No 190
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=52.15 E-value=30 Score=23.14 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... ++. ..+.+||++= +=.+.++.......+++.++.+
T Consensus 68 ~~e~~~Vl~G~~~~~i~---~~~---~~l~~Gd~i~---ip~g~~H~~~~~~~~~~~~l~v 119 (126)
T 1vj2_A 68 WEHEIFVLKGKLTVLKE---QGE---ETVEEGFYIF---VEPNEIHGFRNDTDSEVEFLCL 119 (126)
T ss_dssp SCEEEEEEESEEEEECS---SCE---EEEETTEEEE---ECTTCCEEEECCSSSCEEEEEE
T ss_pred CcEEEEEEEeEEEEEEC---CEE---EEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 56789999999987653 333 3588998762 1134455444333344555444
No 191
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=51.81 E-value=49 Score=21.84 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEE
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAK 64 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~ 64 (234)
...+++|++|++.+... |+ ...+++||++ ++ .+.++.......++++.+.
T Consensus 54 ~~Ei~~v~~G~~~~~i~---~~---~~~l~~Gd~~----~i~~~~~H~~~~~~~~~~~~~~ 104 (128)
T 4i4a_A 54 EYELFIVIQGNAIIRIN---DE---DFPVTKGDLI----IIPLDSEHHVINNNQEDFHFYT 104 (128)
T ss_dssp SEEEEEEEESEEEEEET---TE---EEEEETTCEE----EECTTCCEEEEECSSSCEEEEE
T ss_pred CeEEEEEEeCEEEEEEC---CE---EEEECCCcEE----EECCCCcEEeEeCCCCCEEEEE
Confidence 45799999999988763 33 3468999876 23 3344443333234444443
No 192
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=51.18 E-value=53 Score=22.11 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=30.4
Q ss_pred eeecCCCEEEEecCCC-CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVE-DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~-~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- --. ...+++|++|.+.+... + ....+.+||++-
T Consensus 62 ~~~~pg~~~~~H-~H~~~~E~~~Vl~G~~~~~i~---~----~~~~l~~Gd~i~ 107 (133)
T 1o4t_A 62 MKLPPGSSVGLH-KHEGEFEIYYILLGEGVFHDN---G----KDVPIKAGDVCF 107 (133)
T ss_dssp EEECTTCEEEEE-ECCSEEEEEEEEESEEEEEET---T----EEEEEETTEEEE
T ss_pred EEECCCCccCce-ECCCccEEEEEEeCEEEEEEC---C----EEEEeCCCcEEE
Confidence 567788765432 233 46899999999998753 1 235678998763
No 193
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=50.44 E-value=59 Score=22.41 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=30.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- --....+++|++|.+.+.... +. ...+.+||++-
T Consensus 53 ~~~~pg~~~~~H-~H~~~E~~~Vl~G~~~~~~~~----~~--~~~l~~Gd~i~ 98 (147)
T 2f4p_A 53 VVFEPGARTHWH-SHPGGQILIVTRGKGFYQERG----KP--ARILKKGDVVE 98 (147)
T ss_dssp EEECTTCEECSE-ECTTCEEEEEEEEEEEEEETT----SC--CEEEETTCEEE
T ss_pred EEECCCCccCce-ECCCceEEEEEeCEEEEEECC----EE--EEEECCCCEEE
Confidence 567777765333 334478999999999987532 11 13578888764
No 194
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=49.88 E-value=24 Score=29.57 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCEEEEEEcceEEEEEEcCCCc-------------EEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeC
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGK-------------RKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLP 66 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~-------------~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~ 66 (234)
++.+++|++|+..+..-.++|. ......+.+||+|= + -.-......+.++..++.+.
T Consensus 270 A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~v----v-P~g~~h~~~n~~~~~~l~f~ 339 (416)
T 1uij_A 270 AIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFV----I-PAAYPFVVNATSNLNFLAFG 339 (416)
T ss_dssp CEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEE----E-CTTCCEEEEESSSEEEEEEE
T ss_pred CcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEE----E-CCCCeEEEEcCCCeEEEEEE
Confidence 5689999999998877766552 24456899999882 1 11123334445666666663
No 195
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=49.40 E-value=15 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=21.3
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
...+++|++|++.+... ++.. ..+.+||++
T Consensus 47 ~~e~~~Vl~G~~~~~i~---~~~~--~~l~~Gd~i 76 (117)
T 2b8m_A 47 SYVHLIIIKGEMTLTLE---DQEP--HNYKEGNIV 76 (117)
T ss_dssp SCEEEEEEESEEEEEET---TSCC--EEEETTCEE
T ss_pred CcEEEEEEeCEEEEEEC---CEEE--EEeCCCCEE
Confidence 45788999999988763 3222 258899876
No 196
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=49.10 E-value=94 Score=24.34 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=48.3
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEE-ECCCceEEee---eeeeCcceEEEEEEcCCeEE
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFT-AFPGDMIGGL---AVLTGEASVFTIQSRLPATI 181 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~-~~~g~~~G~~---~~l~~~~~~~~v~A~~~~~~ 181 (234)
+..+++|+.+--+ -+..+-..++++|.+.|... | + .... -..-++|... ++.-.....+++.|.+++++
T Consensus 33 ~~~L~~Ge~~~~~-~~~~E~~iv~l~G~~~V~~~---g--~-~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~ 105 (270)
T 2qjv_A 33 VWQLXAGESITLP-SDERERCLVLVAGLASVXAA---D--S-FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLEL 105 (270)
T ss_dssp EEEECTTCEEEEC-CSSEEEEEEEEESCEEEEET---T--E-EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEE
T ss_pred EEEecCCCEEEec-CCCcEEEEEEecceEEEEEC---C--E-EEeccccccccccCCCCcEEEECCCCEEEEEecCCceE
Confidence 4688999999888 67778888999999999753 2 1 1111 2344566543 33334444777888888887
Q ss_pred EEeC
Q psy8820 182 AWLP 185 (234)
Q Consensus 182 ~~i~ 185 (234)
+...
T Consensus 106 ~v~s 109 (270)
T 2qjv_A 106 AVCS 109 (270)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7544
No 197
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=48.78 E-value=65 Score=24.53 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=31.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEE
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAK 64 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~ 64 (234)
...+++|++|+..+.. +|+.. .+++||++= +=.+.|+.....--++++.+.
T Consensus 186 ~ee~~~vLeG~~~~~~---~~~~~---~l~~GD~~~---~~~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 186 MEHGLLMLEGEGLYKL---EENYY---PVTAGDIIW---MGAHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp SCEEEEEEECEEEEEE---TTEEE---EEETTCEEE---ECTTCCEEEEEESSSCEEEEE
T ss_pred ceEEEEEEECEEEEEE---CCEEE---EcCCCCEEE---ECCCCCEEEEcCCCCCEEEEE
Confidence 4579999999997665 34333 699999863 223445555544445554443
No 198
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=48.70 E-value=45 Score=23.38 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=31.5
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCC--CccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDG--SNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g--~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- -.....+++|++|.+.+.....++ ..+.....+.+||++-
T Consensus 46 ~~~~pg~~~~~H-~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 46 QTISPGQRTPIH-RHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEECTTCBCCEE-EESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEECCCCcCCCe-ECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 466777644222 224567999999999998654210 0122456789998753
No 199
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=47.64 E-value=42 Score=25.48 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... |+. ..+++||++= +=.+.++.......+++.++.+
T Consensus 166 ~~e~~~Vl~G~~~~~i~---~~~---~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v 217 (243)
T 3h7j_A 166 NEQIGICIGGGYDMTVE---GCT---VEMKFGTAYF---CEPREDHGAINRSEKESKSINI 217 (243)
T ss_dssp SEEEEEECSSCEEEEET---TEE---EEECTTCEEE---ECTTCCEEEEECSSSCEEEEEE
T ss_pred CcEEEEEEECEEEEEEC---CEE---EEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 46789999999988753 322 3599999863 2234455444433355665554
No 200
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=47.12 E-value=20 Score=30.30 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.8
Q ss_pred cceeceeeeccCcccC
Q psy8820 219 DFALDWVFLEGGQAVY 234 (234)
Q Consensus 219 ~~~l~~~~~~~~~~~~ 234 (234)
...|+++.++.||++|
T Consensus 262 ~~lLN~v~L~pGea~f 277 (440)
T 1pmi_A 262 CLLLNHVGLNKGEAMF 277 (440)
T ss_dssp TTTEEEEEECTTCEEE
T ss_pred hhhcceEecCCCCEEe
Confidence 7889999999999987
No 201
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=46.65 E-value=50 Score=20.48 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=31.3
Q ss_pred eeecCCCEEEEecCCC-CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVE-DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~-~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|..+-.- -.. ...+++|++|.+.+... + ....+.+||++=
T Consensus 33 ~~~~pg~~~~~H-~H~~~~e~~~v~~G~~~~~~~---~----~~~~l~~Gd~~~ 78 (105)
T 1v70_A 33 YALLPGQAQKVH-VHEGSDKVYYALEGEVVVRVG---E----EEALLAPGMAAF 78 (105)
T ss_dssp EEECTTCEEEEE-CCSSCEEEEEEEESCEEEEET---T----EEEEECTTCEEE
T ss_pred EEECCCCcCCcc-CCCCCcEEEEEEeCEEEEEEC---C----EEEEeCCCCEEE
Confidence 677888876443 333 35799999999998753 1 235689999763
No 202
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=46.31 E-value=18 Score=24.31 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=22.0
Q ss_pred CHHhHHHHHhcchHHHHHHHHHHHH
Q psy8820 185 PQDDCSTLIDADMNVTLKIAHSVLK 209 (234)
Q Consensus 185 ~~~~~~~l~~~~p~~~~~~~~~~~~ 209 (234)
+++.|.++++++|.+..+++..+..
T Consensus 77 ~KeaL~ellEE~PGaalqia~~Li~ 101 (114)
T 3fgx_A 77 QEEELRQAAEEFPGLTFNTASRLME 101 (114)
T ss_dssp GHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCccHHHHHHHHHHH
Confidence 4899999999999999998887765
No 203
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=46.13 E-value=41 Score=23.28 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+++|++|++.+... ++. ...+.+||++= +-.+.++.......+++.++.+
T Consensus 68 ~~E~~~Vl~G~~~~~~~---~~~--~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 68 GGQILIVTRGKGFYQER---GKP--ARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp TCEEEEEEEEEEEEEET---TSC--CEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEE
T ss_pred CceEEEEEeCEEEEEEC---CEE--EEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 46799999999987753 322 13589998862 2234566555444455555554
No 204
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=46.11 E-value=47 Score=24.55 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEE
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTV 54 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv 54 (234)
.+.+++|++|+........+++. .-..+++||++ ++ .|.++..++
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~-~~i~v~~GDlI----iIPaG~~H~f~~ 149 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKW-IRISMEKGDMI----TLPAGIYHRFTL 149 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEE----EECTTCCEEEEE
T ss_pred cceEEEEEeceEEEEECCCCCeE-EEEEECCCCEE----EECcCCcCCccc
Confidence 46799999999988776544432 22368999887 33 345555443
No 205
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=45.98 E-value=60 Score=23.65 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=36.6
Q ss_pred CCceEEEEEeCeEEEEEecCC-CCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 122 EDNKLIYVIAGSLFITQKSSD-GSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 122 ~~~~~y~I~~G~v~v~~~~~~-g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
+.+.++++++|.+.+...+.+ ......-..+++||+|=.-+ +.|.+- ++..++..+.+.+.
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~---gvpHsP--~r~~e~v~lviErk 114 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG---NVPHSP--VRFADTVGIVVEQD 114 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT---TCCEEE--EECTTCEEEEEEEC
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC---CCCcCC--cccCCcEEEEEEec
Confidence 456899999999999876521 00123446789999875332 333332 22456666655443
No 206
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=45.36 E-value=83 Score=22.64 Aligned_cols=70 Identities=7% Similarity=-0.014 Sum_probs=39.5
Q ss_pred eeecCCCEEEE--ecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEc---CCeEE
Q psy8820 107 EHIPGGTCLVR--EEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSR---LPATI 181 (234)
Q Consensus 107 ~~~~~g~~i~~--~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~---~~~~~ 181 (234)
..+++|...-. ........+++|++|.+.+.... ++ ......+++||++-.- .+.+.. +... +++.+
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~-~~--~~~~~~l~~GD~~~~~---~~~~H~--~~n~~~~~~~~~ 193 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD-KE--NPKEALLPTGASMFVE---EHVPHA--FTAAKGTGSAKL 193 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC-TT--SCEEEEECTTCEEEEC---TTCCEE--EEESTTSCCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC-cC--CcccEEECCCCEEEeC---CCCceE--EEecCCCCCeEE
Confidence 45666654321 10223468889999999998643 11 2345679999976432 234333 3333 45666
Q ss_pred EEe
Q psy8820 182 AWL 184 (234)
Q Consensus 182 ~~i 184 (234)
+.+
T Consensus 194 l~v 196 (198)
T 2bnm_A 194 IAV 196 (198)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 207
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=44.14 E-value=1e+02 Score=25.56 Aligned_cols=76 Identities=13% Similarity=-0.019 Sum_probs=45.6
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEE-cCCeEEEEe
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQS-RLPATIAWL 184 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A-~~~~~~~~i 184 (234)
+..+++|...-.- -.....+|+|++|...+.. +| ....+++||+|-.-+ +......-.. .+++.++.+
T Consensus 298 ~~~l~PG~~~~~H-rH~~~~v~~VleG~G~~~V---~g----e~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i 366 (394)
T 3bu7_A 298 MQMLRPGEHTKAH-RHTGNVIYNVAKGQGYSIV---GG----KRFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSF 366 (394)
T ss_dssp EEEECTTCBCCCE-EESSCEEEEEEECCEEEEE---TT----EEEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEE
T ss_pred EEEECCCCcCCCc-ccCCcEEEEEEeCeEEEEE---CC----EEEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEe
Confidence 3777888866554 4456789999999986654 22 235689999875322 2222221111 356777777
Q ss_pred CHHhHHHH
Q psy8820 185 PQDDCSTL 192 (234)
Q Consensus 185 ~~~~~~~l 192 (234)
.-.-+...
T Consensus 367 ~D~Pl~~~ 374 (394)
T 3bu7_A 367 NDFPVMEK 374 (394)
T ss_dssp ESHHHHHH
T ss_pred eCHHHHHH
Confidence 65544443
No 208
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=43.80 E-value=46 Score=27.71 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=37.2
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCce
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDM 157 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~ 157 (234)
..+++|..+... -...+.+++|++|...+...+.++ . ....+++||+
T Consensus 57 ~~l~pgg~~~ph-~~~a~ei~yVl~G~~~v~~v~~~~-~--~~~~l~~GDv 103 (397)
T 2phl_A 57 FRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDD-R--REYFFLTSDN 103 (397)
T ss_dssp EEECSSEEEEEE-EESEEEEEEEEESEEEEEEEETTT-E--EEEEEEESSC
T ss_pred EEECCCcCccCE-ecCCCeEEEEEeeeEEEEEEeCCC-c--EEEEECCCCc
Confidence 678888887666 557889999999999998776544 2 3578999998
No 209
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=43.10 E-value=46 Score=22.47 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=29.4
Q ss_pred CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
..+++|++|++.+... .+|+ ...+++||++= +=.+.++......-+++.++.+
T Consensus 60 ~e~~~vl~G~~~~~~~-~~~~---~~~l~~Gd~~~---ip~~~~H~~~~~~~~~~~~l~i 112 (145)
T 3ht1_A 60 EHEIYVLEGSMGLVLP-DQGR---TEEVGPGEAIF---IPRGEPHGFVTGPGQTCRFLVV 112 (145)
T ss_dssp CEEEEEEEECEEEEEG-GGTE---EEEECTTCEEE---ECTTCCBEEECCTTCCEEEEEE
T ss_pred ceEEEEEEeEEEEEEe-ECCE---EEEECCCCEEE---ECCCCeEEeEcCCCCCEEEEEE
Confidence 4556799999987621 1232 34699999762 1134455444333344555544
No 210
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=42.01 E-value=85 Score=21.80 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=29.9
Q ss_pred eeecCCCE--EEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTC--LVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~--i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|.. -... -.....+++|++|.+.+.... ....+++||++
T Consensus 51 ~~l~pg~~~~~~H~-H~~~~E~~~Vl~G~~~~~~~~-------~~~~l~~Gd~i 96 (162)
T 3l2h_A 51 IQIEPGKESTEYHL-HHYEEEAVYVLSGKGTLTMEN-------DQYPIAPGDFV 96 (162)
T ss_dssp EEECTTCBSSSSBE-ESSCCEEEEEEESCEEEEETT-------EEEEECTTCEE
T ss_pred EEECCCCcCCCCcc-CCCCCEEEEEEEEEEEEEECC-------EEEEeCCCCEE
Confidence 56777763 1222 235678999999999997531 13568999976
No 211
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=41.84 E-value=19 Score=27.72 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=23.6
Q ss_pred CCEEEEEEcceEEEEE--------EcC-----CCc-EEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVK--------TLE-----SGK-RKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~--------~~~-----~g~-~~~~~~~~~G~~f 39 (234)
.+.+++|++|++.+.. ... +|. ......+++||++
T Consensus 64 ~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i 112 (239)
T 2xlg_A 64 INEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLI 112 (239)
T ss_dssp EEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEE
T ss_pred ccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEE
Confidence 4679999999999887 211 111 1224579999986
No 212
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=41.72 E-value=41 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 121 VEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 121 ~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.....+++|++|.+.+.....+| +.....+++||++-
T Consensus 69 ~~~~E~~~Vl~G~~~~~v~~~~g--~~~~~~L~~GD~v~ 105 (350)
T 1juh_A 69 QKHYENFYCNKGSFQLWAQSGNE--TQQTRVLSSGDYGS 105 (350)
T ss_dssp SSCEEEEEEEESEEEEEEEETTS--CCEEEEEETTCEEE
T ss_pred CCceEEEEEEEEEEEEEECCcCC--ceEEEEECCCCEEE
Confidence 34578888999999998765444 33456789999753
No 213
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=40.63 E-value=86 Score=21.48 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=34.3
Q ss_pred EEEEEEcceEEEEEEcCCCc-E-EEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 7 STYIVLTGRLRSVKTLESGK-R-KEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~-~-~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
..+.|++|+++.+.-..+|. + ...-...+|+. | +.......+|.++++...+.|
T Consensus 41 g~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~-~----~i~Pq~wH~Ve~lsdd~~f~l 96 (127)
T 3bb6_A 41 PRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQF-A----VFPPEKWHNIEAMTDDTYFNI 96 (127)
T ss_dssp EEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBE-E----ECCSSCEEEEEESSTTCEEEE
T ss_pred EEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCc-e----EECCCCcEEEEEcCCCEEEEE
Confidence 47899999999987666665 1 22233445544 3 334556788998776555544
No 214
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=40.56 E-value=37 Score=26.39 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=31.8
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEc-cceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAV-RDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~-~~~~l~~i 65 (234)
.+.+++|++|++.+... ++ ...+++||++= +=.+.++....... +++.++..
T Consensus 203 ~~E~~yVl~G~~~~~i~---~~---~~~l~~GD~i~---i~~~~~H~~~n~~~~~~~~~l~~ 255 (274)
T 1sef_A 203 QEHGAYLISGQGMYNLD---NE---WYPVEKGDYIF---MSAYVPQAAYAVGREEPLMYVYS 255 (274)
T ss_dssp CCEEEEEEECEEEEEET---TE---EEEEETTCEEE---ECTTCCEEEEEECSSSCEEEEEE
T ss_pred CeEEEEEEeCEEEEEEC---CE---EEEECCCCEEE---ECCCCCEEEEeCCCCCCEEEEEE
Confidence 56789999999987763 32 24699999862 11344555444333 44454443
No 215
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=40.12 E-value=39 Score=28.11 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEE-ccceeEEEeC
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMA-VRDSELAKLP 66 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A-~~~~~l~~i~ 66 (234)
.+.+|+|++|+..+.. +|+. ..+++||+|=.- .+..+...... .+++.++.+.
T Consensus 314 ~~~v~~VleG~G~~~V---~ge~---~~~~~GD~~~iP---~g~~H~~~N~g~~e~~~ll~i~ 367 (394)
T 3bu7_A 314 GNVIYNVAKGQGYSIV---GGKR---FDWSEHDIFCVP---AWTWHEHCNTQERDDACLFSFN 367 (394)
T ss_dssp SCEEEEEEECCEEEEE---TTEE---EEECTTCEEEEC---TTCCEEEEECCSSCCEEEEEEE
T ss_pred CcEEEEEEeCeEEEEE---CCEE---EEEeCCCEEEEC---CCCeEEeEeCCCCCCeEEEEee
Confidence 4679999999985554 3433 459999997311 22333332222 3456666553
No 216
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=39.15 E-value=25 Score=25.17 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCEEEEEEc--ceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeC
Q psy8820 5 SDSTYIVLT--GRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLP 66 (234)
Q Consensus 5 ~~~~yii~~--G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~ 66 (234)
.+.+|+|++ |+..+.. +|+. ..+++||++ ++ .+.++.. . .+.+++.+-
T Consensus 66 ~~E~~yVLe~~G~g~v~i---dge~---~~l~~GD~v----~IPpg~~H~i--~--g~l~~L~I~ 116 (157)
T 4h7l_A 66 HQEIYVVLDHAAHATIEL---NGQS---YPLTKLLAI----SIPPLVRHRI--V--GEATIINIV 116 (157)
T ss_dssp CEEEEEEEEECTTCEEEE---TTEE---EECCTTEEE----EECTTCCEEE--E--SCEEEEEEE
T ss_pred CcEEEEEEecCcEEEEEE---CCEE---EEeCCCCEE----EECCCCeEee--E--CCEEEEEEE
Confidence 357999999 9998876 3432 468999886 23 2334433 2 367777663
No 217
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=39.10 E-value=1.2e+02 Score=23.90 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820 122 EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187 (234)
Q Consensus 122 ~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~ 187 (234)
..+.++++++|.+.+...+. | ...-..+++|++|=.-. +.+. +-++.++|..+.|.+.
T Consensus 50 ~~dE~FyqlkG~m~l~~~d~-g--~~~~V~i~eGemfllP~---gv~H--sP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 50 EGEEVFYQLEGDMVLRVLEQ-G--KHRDVVIRQGEIFLLPA---RVPH--SPQRFANTVGLVVERR 107 (286)
T ss_dssp SSCEEEEEEESCEEEEEEET-T--EEEEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEEC
T ss_pred CCCeEEEEEeCeEEEEEEeC-C--ceeeEEECCCeEEEeCC---CCCc--CCcccCCeEEEEEeec
Confidence 46789999999999987652 3 23445689998875332 2322 2234567777766643
No 218
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=37.69 E-value=85 Score=20.57 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=46.1
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCe--EEEEe
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPA--TIAWL 184 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~--~~~~i 184 (234)
..+++|...-.- --....+++|++|...+.... ....+++||++=-- .+.+........+++ .++.+
T Consensus 39 ~~~~pg~~~~~H-~H~~~Ei~~v~~G~~~~~i~~-------~~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f 107 (128)
T 4i4a_A 39 CIVRPETKSFRH-SHNEYELFIVIQGNAIIRIND-------EDFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWW 107 (128)
T ss_dssp EEECTTEECCCB-CCSSEEEEEEEESEEEEEETT-------EEEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEE
T ss_pred EEECCCCccCCE-ecCCeEEEEEEeCEEEEEECC-------EEEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEE
Confidence 566677633322 345678999999999987632 13567898865422 133333222223443 34567
Q ss_pred CHHhHHHHHhcch
Q psy8820 185 PQDDCSTLIDADM 197 (234)
Q Consensus 185 ~~~~~~~l~~~~p 197 (234)
+.+.+..++.+.+
T Consensus 108 ~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 108 DKESTLNFLTRLE 120 (128)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc
Confidence 7777666655443
No 219
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=37.16 E-value=77 Score=23.92 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=40.7
Q ss_pred eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185 (234)
Q Consensus 106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~ 185 (234)
+..+++|..+-.- .-+.....+|++|.+. +.+ ..+.+|+++-.-. + ...+..|.++|.|+...
T Consensus 47 lvr~~pG~~~p~H-~H~g~Ee~~VL~G~f~----d~~-------~~~~~Gd~~~~P~---g--~~H~p~a~~gc~~~vk~ 109 (223)
T 3o14_A 47 IVRYAPGSRFSAH-THDGGEEFIVLDGVFQ----DEH-------GDYPAGTYVRNPP---T--TSHVPGSAEGCTIFVKL 109 (223)
T ss_dssp EEEECTTEECCCE-ECTTCEEEEEEEEEEE----ETT-------EEEETTEEEEECT---T--CEECCEESSCEEEEEEE
T ss_pred EEEECCCCCcccc-cCCCCEEEEEEEeEEE----ECC-------eEECCCeEEEeCC---C--CccccEeCCCCEEEEEe
Confidence 4788899877765 6667888899999975 111 2567888754321 1 23334456778777654
No 220
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=36.35 E-value=35 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=22.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
++.+++|++|++.+... |+ ...+++||+|
T Consensus 239 ~~e~~~vl~G~~~~~i~---~~---~~~l~~GD~~ 267 (337)
T 1y3t_A 239 HTETFYCLEGQMTMWTD---GQ---EIQLNPGDFL 267 (337)
T ss_dssp CEEEEEEEESCEEEEET---TE---EEEECTTCEE
T ss_pred CcEEEEEEeCEEEEEEC---CE---EEEECCCCEE
Confidence 47899999999988763 32 2469999987
No 221
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=36.17 E-value=49 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=31.9
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL 65 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i 65 (234)
...+|.|++|+.++.. +|+. ..+++||+|=--+ +.++.. .+.+++.++.+
T Consensus 288 ~~ev~~v~~G~g~~~v---~~~~---~~~~~GD~~~vP~---~~~H~~--~n~e~~~l~~~ 337 (354)
T 2d40_A 288 DSTIYHVVEGSGQVII---GNET---FSFSAKDIFVVPT---WHGVSF--QTTQDSVLFSF 337 (354)
T ss_dssp SCEEEEEEEEEEEEEE---TTEE---EEEETTCEEEECT---TCCEEE--EEEEEEEEEEE
T ss_pred CcEEEEEEeCeEEEEE---CCEE---EEEcCCCEEEECC---CCeEEE--EeCCCEEEEEE
Confidence 4579999999998877 3422 4699999973111 223333 33467777666
No 222
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=35.92 E-value=78 Score=23.35 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=24.6
Q ss_pred CceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 123 DNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 123 ~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.+.+++|++|.......+.++ +.....+++||++-
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d--~~~~i~v~~GDlIi 138 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKED--KWIRISMEKGDMIT 138 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTS--CEEEEEEETTEEEE
T ss_pred cceEEEEEeceEEEEECCCCC--eEEEEEECCCCEEE
Confidence 478999999999988765322 23334678888763
No 223
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=34.99 E-value=1e+02 Score=23.58 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=28.9
Q ss_pred eeecCCCEEEEe-cCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVRE-EVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~-~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...-.. .....+.+++|++|.+.+... + + ...+++||++-
T Consensus 64 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~---~-~---~~~L~~Gd~~~ 110 (261)
T 1rc6_A 64 VTLHQNGGNQQGFGGEGIETFLYVISGNITAKAE---G-K---TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEESSCSCCTTEEEEEEEEESEEEEEET---T-E---EEEEETTEEEE
T ss_pred EEEcCCCccCCCCCCCCceEEEEEEEeEEEEEEC---C-E---EEEECCCCEEE
Confidence 566666543322 012245789999999999862 2 1 35688999764
No 224
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=33.24 E-value=48 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+++|++|++.+.. +|+. ..+++||++
T Consensus 67 ~~e~~~Vl~G~~~~~~---~~~~---~~l~~Gd~~ 95 (337)
T 1y3t_A 67 THEGILVLDGKLELTL---DGER---YLLISGDYA 95 (337)
T ss_dssp CCEEEEEEESCEEEEE---TTEE---EEECTTCEE
T ss_pred ceEEEEEEECEEEEEE---CCEE---EEECCCCEE
Confidence 5789999999998875 2432 469999886
No 225
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=32.33 E-value=1.7e+02 Score=23.64 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=44.9
Q ss_pred eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184 (234)
Q Consensus 105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i 184 (234)
.+..+++|..--.- -.....+|+|++|..++.. ++ ....+++||+|---+ +.. .++.+.+++.++.+
T Consensus 271 ~~~~l~pG~~~~~H-~h~~~ev~~v~~G~g~~~v---~~----~~~~~~~GD~~~vP~---~~~--H~~~n~e~~~l~~~ 337 (354)
T 2d40_A 271 FLQLLPKGFASRVA-RTTDSTIYHVVEGSGQVII---GN----ETFSFSAKDIFVVPT---WHG--VSFQTTQDSVLFSF 337 (354)
T ss_dssp EEEEECTTCBCCCB-EESSCEEEEEEEEEEEEEE---TT----EEEEEETTCEEEECT---TCC--EEEEEEEEEEEEEE
T ss_pred EEEEECCCCCCCce-ecCCcEEEEEEeCeEEEEE---CC----EEEEEcCCCEEEECC---CCe--EEEEeCCCEEEEEE
Confidence 34677777654333 3455689999999999876 22 236789999876432 222 22333467777777
Q ss_pred CHHhHH
Q psy8820 185 PQDDCS 190 (234)
Q Consensus 185 ~~~~~~ 190 (234)
.-.-+.
T Consensus 338 ~d~p~~ 343 (354)
T 2d40_A 338 SDRPVQ 343 (354)
T ss_dssp ESHHHH
T ss_pred cCHHHH
Confidence 544333
No 226
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.57 E-value=1.4e+02 Score=21.27 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=31.0
Q ss_pred eeecCCCEEEEe-cCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVRE-EVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~-~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
..+++|...... .......+++|++|.+.+... + ....+.+||++=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~---~----~~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD---E----QWHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET---T----EEEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC---C----EEEEeCCCCEEE
Confidence 466777765432 123457899999999998763 1 234789999763
No 227
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=31.09 E-value=43 Score=26.20 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=41.0
Q ss_pred ceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820 104 IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAW 183 (234)
Q Consensus 104 ~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~ 183 (234)
..+..+++|..--.. ......+.+|++|.+.+...+ | + ...+++||++=.-+ +.+... +..++++++.
T Consensus 72 ~~lv~l~PGg~s~~~-~h~~EEfiyVleG~l~l~l~~--g-~---~~~L~~Gds~y~p~---~~~H~~--~N~~~Ar~l~ 139 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLP-PQDIERLIFVVEGAVTLTNTS--S-S---SKKLTVDSYAYLPP---NFHHSL--DCVESATLVV 139 (266)
T ss_dssp EEEEEECSSEECCCC-CTTEEEEEEEEEECEEEEC----C-C---CEEECTTEEEEECT---TCCCEE--EESSCEEEEE
T ss_pred EEEEEECcCCcCCCC-CCCCeEEEEEEEEEEEEEECC--C-c---EEEEcCCCEEEECC---CCCEEE--EeCCCEEEEE
Confidence 334677887753112 445679999999999998531 2 2 24678988664321 222222 2246677777
Q ss_pred eC
Q psy8820 184 LP 185 (234)
Q Consensus 184 i~ 185 (234)
+.
T Consensus 140 V~ 141 (266)
T 4e2q_A 140 FE 141 (266)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 228
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=30.77 E-value=1.3e+02 Score=20.59 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=28.5
Q ss_pred eEEEEEeCeEEEEEecCCCC-ccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC
Q psy8820 125 KLIYVIAGSLFITQKSSDGS-NDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP 178 (234)
Q Consensus 125 ~~y~I~~G~v~v~~~~~~g~-~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~ 178 (234)
..+.|++|.++++..+.+|. .........+|+. +. ..-.....|.++++
T Consensus 41 g~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~-~~----i~Pq~wH~Ve~lsd 90 (127)
T 3bb6_A 41 PRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQF-AV----FPPEKWHNIEAMTD 90 (127)
T ss_dssp EEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBE-EE----CCSSCEEEEEESST
T ss_pred EEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCc-eE----ECCCCcEEEEEcCC
Confidence 56889999999987666664 1122233445543 22 22234567777555
No 229
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=30.62 E-value=65 Score=26.49 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=32.8
Q ss_pred eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.+..+++|+..-.- -.....+|+|++|.-..... +| ....+++||++=
T Consensus 106 ~~~~l~PG~~~~~H-rH~~~ev~~VleG~G~~~~v--dG----~~~~~~~GD~v~ 153 (368)
T 3nw4_A 106 AIQYLGPRETAPEH-RHSQNAFRFVVEGEGVWTVV--NG----DPVRMSRGDLLL 153 (368)
T ss_dssp EEEEECTTCEEEEE-EESSCEEEECSSCEEEEEEE--TT----EEEEEETTCEEE
T ss_pred EEEEECCCCccCce-ecccceEEEEEecceEEEEE--CC----EEEEEeCCCEEE
Confidence 34889999987765 45567999999998752322 23 134578888764
No 230
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=28.74 E-value=14 Score=23.83 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=29.8
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..++||..+--+.-.....+|+|++|.+++...+ + ......+.+|+.+
T Consensus 22 ~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d--~--~~~~~~l~~G~~~ 69 (98)
T 3lag_A 22 WRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPD--G--TRSLAQLKTGRSY 69 (98)
T ss_dssp EEECTTEECCSEECCSCEEEEESSCBC-CEECTT--S--CEECCCBCTTCCE
T ss_pred EEECCCCccCcEECCCcEEEEEEeccEEEEEeCC--C--ceEEEEecCCcEE
Confidence 6788888776551334456788889999987532 2 2233456777753
No 231
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=28.28 E-value=43 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=22.5
Q ss_pred CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+++|++|+...... .+++ ..-..+++||++
T Consensus 100 ~~Ei~~Vl~G~g~~~i~-~~d~-~~~~~l~~GDli 132 (179)
T 1zrr_A 100 EDEVRFFVEGAGLFCLH-IGDE-VFQVLCEKNDLI 132 (179)
T ss_dssp SCEEEEEEESCCCCCEE-CSSC-EEEEECCCSCEE
T ss_pred hheEEEEEcceEEEEEE-eCCE-EEEEEECCCCEE
Confidence 36799999999876554 3343 222358999987
No 232
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=28.18 E-value=1.4e+02 Score=20.26 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=30.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI 158 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~ 158 (234)
..+++|..+-.-.-...+.+++|++|.+.+....... .......+.+||++
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~-~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQD-NLHFQEEVFDDYAI 98 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTT-BCCEEEEEETTCEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCccc-cceeeEEECCCCEE
Confidence 5667776543220233458999999999998754221 11123568899865
No 233
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=28.17 E-value=45 Score=20.39 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=22.9
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPFV 215 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 215 (234)
..++.++.++|.+...++..+.+.-..+.
T Consensus 16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~ 44 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQQIGRENPQLL 44 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHH
Confidence 47889999999998888888776655553
No 234
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=28.16 E-value=68 Score=18.85 Aligned_cols=30 Identities=3% Similarity=0.166 Sum_probs=23.5
Q ss_pred HhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820 187 DDCSTLIDADMNVTLKIAHSVLKRMSPFVR 216 (234)
Q Consensus 187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 216 (234)
..++.++.++|++...++..+.+.-..+.+
T Consensus 14 ~~lR~~vq~NP~~L~~lLqql~~~nP~l~~ 43 (61)
T 2f4m_B 14 QQMRQIIQQNPSLLPALLQQIGRENPQLLQ 43 (61)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHH
Confidence 568889999999988888888776665543
No 235
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=23.88 E-value=1.9e+02 Score=20.30 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=29.9
Q ss_pred eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820 107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG 159 (234)
Q Consensus 107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G 159 (234)
.++++|..+-.- .-+....++|++|..+.. .++ ..+.+|+++=
T Consensus 47 vr~~pG~~~p~H-~H~g~ee~~VL~G~~~~~---e~~------~~~~~Gd~~~ 89 (159)
T 3ebr_A 47 LKAPAGMEMPRH-HHTGTVIVYTVQGSWRYK---EHD------WVAHAGSVVY 89 (159)
T ss_dssp EEECSSCBCCCE-EESSCEEEEEEESCEEET---TSS------CCBCTTCEEE
T ss_pred EEECCCCCcccc-cCCCCEEEEEEEeEEEEe---CCC------eEECCCeEEE
Confidence 788888877765 556678888999998852 111 1467787654
No 236
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=23.66 E-value=1.2e+02 Score=20.19 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.7
Q ss_pred cceEEEEE-EcCCCcEEEEEeecCCc
Q psy8820 13 TGRLRSVK-TLESGKRKEEAEYSKGD 37 (234)
Q Consensus 13 ~G~v~v~~-~~~~g~~~~~~~~~~G~ 37 (234)
+|.|+... ..++|....++++-||+
T Consensus 23 dGkV~S~~~~~~dG~~kTlGVm~PGe 48 (111)
T 3hqx_A 23 GGLCISHTVQFEDGTKKTLGVILPTE 48 (111)
T ss_dssp TTTEEEEEEECTTSCEEEEEEECCCS
T ss_pred CCeEEEEEEEeCCCCEEEEEEEeccc
Confidence 67765544 34788888999999997
No 237
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=23.57 E-value=86 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
..|+|++|+..+.. +|+. ..+++||++
T Consensus 214 ~~~~il~G~~~~~~---~~~~---~~v~~GD~~ 240 (278)
T 1sq4_A 214 HGLYVLEGKAVYRL---NQDW---VEVEAGDFM 240 (278)
T ss_dssp EEEEEEECEEEEEE---TTEE---EEEETTCEE
T ss_pred EEEEEEeCEEEEEE---CCEE---EEeCCCCEE
Confidence 67899999997654 3433 458999986
No 238
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=23.21 E-value=1.2e+02 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.5
Q ss_pred EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820 7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV 39 (234)
Q Consensus 7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f 39 (234)
.+.+|.+|...+... |+. ..+++||+|
T Consensus 40 ~i~~v~~G~~~~~i~---~~~---~~l~~Gd~~ 66 (164)
T 2arc_A 40 ILNLTIRGQGVVKNQ---GRE---FVCRPGDIL 66 (164)
T ss_dssp EEEEEEEECEEEEET---TEE---EEECTTCEE
T ss_pred EEEEEEEeEEEEEEC---CEE---EEecCCeEE
Confidence 478899999987763 332 358888876
No 239
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=20.20 E-value=96 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=17.4
Q ss_pred cceEEEEEE-cCCCcEEEEEeecCCc
Q psy8820 13 TGRLRSVKT-LESGKRKEEAEYSKGD 37 (234)
Q Consensus 13 ~G~v~v~~~-~~~g~~~~~~~~~~G~ 37 (234)
+|.|+...- .++|....++++-||+
T Consensus 22 DGkV~S~~~~~~dG~~kTlGVm~PGe 47 (106)
T 3eo6_A 22 DGRRSERSVILADGSMHSLTLLHPGV 47 (106)
T ss_dssp TTTEEEEEEEETTSCEEEEEEECSEE
T ss_pred CCeEEEEEEEeCCCCeEEEEEEeeeE
Confidence 566654433 3678788888888885
Done!