RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8820
         (234 letters)



>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus
           novosp. MN-32, kumamolisin [TaxId: 198803]}
          Length = 357

 Score = 28.5 bits (62), Expect = 0.66
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 124 NKLIYVIAGSLF--ITQKSSDGSNDVHLFTAFPG-DMIGGLAVLTGEA 168
           N  +Y +   +F  IT+ ++D +N   ++ A PG D   GL    G  
Sbjct: 303 NPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGIR 350


>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
           TRBP111 {Escherichia coli [TaxId: 562]}
          Length = 111

 Score = 26.8 bits (59), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 91  MEQLGVKDFSGLDIRVEHI 109
           ME +   DF+ L++RV  I
Sbjct: 1   METVAYADFARLEMRVGKI 19


>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 26.7 bits (59), Expect = 1.9
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 71  DHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHI 109
           D  PRS  E + +  +  EF+++  ++ ++      EHI
Sbjct: 12  DFKPRSQMETDFLELAMDEFIQRYKLEGYA-----FEHI 45


>d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine
           hepatitis virus, MHV [TaxId: 11138]}
          Length = 153

 Score = 26.3 bits (58), Expect = 2.3
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 71  DHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHI 109
              PRS  E++ +      F+ +  ++D++      EH+
Sbjct: 14  SFTPRSEMEKDFMDLDDDVFIAKYSLQDYA-----FEHV 47


>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
           synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
           29292]}
          Length = 107

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 98  DFSGLDIRV------EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFT 151
           DF+ LD+RV      +  P    L   +V   +++  ++AG     +     +  V +  
Sbjct: 7   DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVA 66

Query: 152 AFPGDMIGG 160
                 + G
Sbjct: 67  NLEPKKLRG 75


>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli
           [TaxId: 562]}
          Length = 132

 Score = 24.4 bits (52), Expect = 9.5
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 4   RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELA 63
           R +   +V     R ++    G      E     +        S +        R     
Sbjct: 23  RGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQA---FWHEWRKGNTI 79

Query: 64  KLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIP 110
             P G   +L      ++ +H       E    K + G+D   E IP
Sbjct: 80  STPRGDVVYLDLRHLGEKKLHERLPFICELA--KAYVGVDPVKEPIP 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,709
Number of extensions: 34845
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 8
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)