Query psy8823
Match_columns 386
No_of_seqs 305 out of 2484
Neff 11.5
Searched_HMMs 46136
Date Fri Aug 16 20:08:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.7E-43 5.9E-48 322.1 30.4 333 21-385 237-592 (1051)
2 KOG3513|consensus 100.0 3.3E-41 7.1E-46 308.5 32.1 331 25-385 40-494 (1051)
3 KOG4221|consensus 100.0 3.5E-34 7.5E-39 261.8 30.5 336 21-385 38-396 (1381)
4 KOG4194|consensus 100.0 1.7E-34 3.6E-39 246.7 23.0 295 20-328 499-801 (873)
5 KOG4222|consensus 100.0 1.6E-33 3.6E-38 256.0 18.7 343 17-385 24-391 (1281)
6 PHA02785 IL-beta-binding prote 100.0 2.8E-30 6E-35 220.1 27.9 259 32-316 34-320 (326)
7 KOG4221|consensus 100.0 2.3E-30 4.9E-35 237.1 23.0 275 23-327 139-420 (1381)
8 KOG4222|consensus 100.0 8.2E-31 1.8E-35 238.6 17.8 341 21-382 128-481 (1281)
9 KOG4194|consensus 100.0 2.3E-27 4.9E-32 203.4 18.3 238 141-385 509-776 (873)
10 PHA02785 IL-beta-binding prote 99.9 9.4E-25 2E-29 186.3 19.7 226 146-385 37-307 (326)
11 PHA02826 IL-1 receptor-like pr 99.9 1.6E-21 3.4E-26 156.1 18.1 165 31-210 29-211 (227)
12 PHA02826 IL-1 receptor-like pr 99.9 1.9E-20 4.2E-25 149.8 18.0 156 143-314 30-214 (227)
13 cd05762 Ig8_MLCK Eighth immuno 99.8 5.5E-18 1.2E-22 117.8 12.0 97 226-329 1-97 (98)
14 cd05851 Ig3_Contactin-1 Third 99.7 1.5E-16 3.3E-21 108.4 10.0 87 225-322 1-87 (88)
15 cd05735 Ig8_DSCAM Eight immuno 99.7 5.9E-16 1.3E-20 105.4 11.7 87 240-329 1-88 (88)
16 cd04975 Ig4_SCFR_like Fourth i 99.7 1.1E-15 2.3E-20 106.3 11.1 89 233-323 11-100 (101)
17 cd05745 Ig3_Peroxidasin Third 99.7 8.5E-16 1.8E-20 101.3 8.7 74 239-322 1-74 (74)
18 cd05852 Ig5_Contactin-1 Fifth 99.6 1.1E-15 2.3E-20 99.8 8.7 73 240-322 1-73 (73)
19 cd05869 Ig5_NCAM-1 Fifth immun 99.6 2.8E-15 6.2E-20 104.5 10.9 96 225-322 2-97 (97)
20 cd05747 Ig5_Titin_like M5, fif 99.6 4E-15 8.8E-20 102.7 10.8 89 225-320 3-91 (92)
21 cd05773 Ig8_hNephrin_like Eigh 99.6 3.6E-15 7.8E-20 105.9 10.6 101 223-326 2-108 (109)
22 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5E-15 1.1E-19 100.2 10.7 82 234-322 4-86 (86)
23 KOG3515|consensus 99.6 6.1E-15 1.3E-19 133.5 13.9 303 34-366 17-345 (741)
24 PF07679 I-set: Immunoglobulin 99.6 9.9E-15 2.1E-19 100.8 11.9 90 226-322 1-90 (90)
25 cd04968 Ig3_Contactin_like Thi 99.6 9.2E-15 2E-19 100.1 11.1 86 226-322 2-87 (88)
26 cd05737 Ig_Myomesin_like_C C-t 99.6 8.4E-15 1.8E-19 101.0 10.8 85 232-322 8-92 (92)
27 cd05892 Ig_Myotilin_C C-termin 99.6 7.2E-15 1.6E-19 96.2 9.8 74 243-322 1-75 (75)
28 cd05762 Ig8_MLCK Eighth immuno 99.6 1E-14 2.2E-19 101.4 11.0 95 25-136 1-95 (98)
29 cd05863 Ig2_VEGFR-3 Second imm 99.6 5.3E-15 1.2E-19 93.9 8.8 66 243-323 1-66 (67)
30 cd05723 Ig4_Neogenin Fourth im 99.6 8.2E-15 1.8E-19 95.6 9.8 71 242-322 1-71 (71)
31 cd05728 Ig4_Contactin-2-like F 99.6 7.4E-15 1.6E-19 99.6 9.9 81 231-322 5-85 (85)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.6 1.4E-14 3.1E-19 99.5 11.4 84 232-322 7-90 (90)
33 cd05730 Ig3_NCAM-1_like Third 99.6 1.3E-14 2.7E-19 101.1 11.0 82 234-324 12-94 (95)
34 cd05771 IgC_Tapasin_R Tapasin- 99.6 2.9E-14 6.2E-19 106.7 13.5 124 188-312 2-132 (139)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.1E-14 2.3E-19 101.5 10.3 88 234-323 12-100 (101)
36 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.1E-14 2.3E-19 101.8 10.4 95 225-322 2-96 (96)
37 cd05851 Ig3_Contactin-1 Third 99.6 1.8E-14 3.9E-19 98.1 10.9 80 142-222 8-87 (88)
38 cd05868 Ig4_NrCAM Fourth immun 99.6 1.3E-14 2.9E-19 95.8 9.9 75 240-322 1-75 (76)
39 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.5E-14 3.3E-19 94.8 9.9 76 244-321 2-77 (79)
40 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.6E-14 3.5E-19 95.7 10.2 74 240-322 1-75 (76)
41 cd05748 Ig_Titin_like Immunogl 99.6 1.9E-14 4.1E-19 95.0 10.4 74 242-322 1-74 (74)
42 cd04969 Ig5_Contactin_like Fif 99.6 1.1E-14 2.4E-19 95.8 9.1 73 240-322 1-73 (73)
43 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.3E-14 2.9E-19 101.4 10.0 91 226-322 3-98 (98)
44 cd05865 Ig1_NCAM-1 First immun 99.6 3.6E-14 7.8E-19 97.8 11.5 86 231-322 6-95 (96)
45 cd05893 Ig_Palladin_C C-termin 99.6 2.6E-14 5.7E-19 93.7 9.7 74 243-322 1-75 (75)
46 KOG3515|consensus 99.6 3.1E-14 6.7E-19 129.0 12.1 220 146-366 18-251 (741)
47 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.7E-14 5.9E-19 91.9 8.6 69 243-323 1-69 (70)
48 cd05746 Ig4_Peroxidasin Fourth 99.6 1.9E-14 4E-19 93.4 7.9 68 243-320 1-68 (69)
49 cd04976 Ig2_VEGFR Second immun 99.6 3.5E-14 7.6E-19 92.4 9.1 70 243-323 1-70 (71)
50 cd05854 Ig6_Contactin-2 Sixth 99.6 7.3E-14 1.6E-18 94.3 10.8 82 241-326 1-85 (85)
51 cd05865 Ig1_NCAM-1 First immun 99.6 9.8E-14 2.1E-18 95.7 11.5 91 27-131 3-95 (96)
52 cd05876 Ig3_L1-CAM Third immun 99.6 3.7E-14 7.9E-19 92.5 8.8 70 243-322 1-70 (71)
53 cd05771 IgC_Tapasin_R Tapasin- 99.5 2.4E-13 5.2E-18 101.7 14.2 113 97-211 2-132 (139)
54 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 7.3E-14 1.6E-18 93.0 10.1 76 244-321 2-79 (81)
55 cd05891 Ig_M-protein_C C-termi 99.5 7E-14 1.5E-18 96.1 10.3 86 231-322 7-92 (92)
56 cd04978 Ig4_L1-NrCAM_like Four 99.5 5.6E-14 1.2E-18 93.5 9.4 75 240-322 1-75 (76)
57 cd05743 Ig_Perlecan_D2_like Im 99.5 7.1E-14 1.5E-18 93.1 9.8 76 240-322 1-76 (78)
58 cd05744 Ig_Myotilin_C_like Imm 99.5 8.3E-14 1.8E-18 91.7 9.9 75 243-322 1-75 (75)
59 cd04975 Ig4_SCFR_like Fourth i 99.5 1.3E-13 2.8E-18 95.8 11.3 80 143-223 11-100 (101)
60 cd04968 Ig3_Contactin_like Thi 99.5 1.6E-13 3.5E-18 93.9 11.6 80 142-222 8-87 (88)
61 PF07679 I-set: Immunoglobulin 99.5 1.7E-13 3.6E-18 94.6 11.8 90 25-131 1-90 (90)
62 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 7.7E-14 1.7E-18 90.0 9.3 68 240-320 1-68 (69)
63 cd05866 Ig1_NCAM-2 First immun 99.5 1.6E-13 3.4E-18 93.6 11.3 84 231-322 6-91 (92)
64 cd05853 Ig6_Contactin-4 Sixth 99.5 6.6E-14 1.4E-18 93.3 9.0 82 241-326 1-85 (85)
65 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.3E-13 2.8E-18 96.3 11.0 94 225-320 2-97 (98)
66 cd05857 Ig2_FGFR Second immuno 99.5 9.7E-14 2.1E-18 94.5 9.9 81 236-322 5-85 (85)
67 cd04970 Ig6_Contactin_like Six 99.5 1.6E-13 3.4E-18 93.2 10.5 82 241-326 1-85 (85)
68 cd05866 Ig1_NCAM-2 First immun 99.5 1.6E-13 3.6E-18 93.5 10.6 89 27-131 3-91 (92)
69 cd05737 Ig_Myomesin_like_C C-t 99.5 2.9E-13 6.3E-18 93.3 11.8 79 142-221 8-91 (92)
70 cd05726 Ig4_Robo Fhird immunog 99.5 1.5E-13 3.2E-18 94.4 10.3 80 240-327 1-86 (90)
71 cd07693 Ig1_Robo First immunog 99.5 1.5E-13 3.2E-18 97.1 10.6 96 225-322 1-99 (100)
72 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 4.4E-13 9.6E-18 90.7 11.9 77 144-221 4-85 (86)
73 cd05852 Ig5_Contactin-1 Fifth 99.5 1.6E-13 3.5E-18 89.5 9.3 71 150-221 1-72 (73)
74 cd05745 Ig3_Peroxidasin Third 99.5 1.4E-13 3E-18 90.7 8.9 72 149-221 1-73 (74)
75 cd05728 Ig4_Contactin-2-like F 99.5 2.5E-13 5.5E-18 92.0 10.3 79 142-221 6-84 (85)
76 cd05848 Ig1_Contactin-5 First 99.5 3E-13 6.4E-18 93.4 10.8 69 239-316 18-87 (94)
77 cd05725 Ig3_Robo Third immunog 99.5 1.1E-13 2.4E-18 89.9 8.0 69 243-322 1-69 (69)
78 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.4E-13 7.4E-18 92.2 10.8 81 141-222 9-90 (91)
79 cd05850 Ig1_Contactin-2 First 99.5 4.7E-13 1E-17 92.4 11.4 72 240-320 19-92 (94)
80 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.8E-13 3.8E-18 90.1 8.8 72 243-322 1-73 (74)
81 cd05764 Ig_2 Subgroup of the i 99.5 2.7E-13 5.8E-18 89.5 9.7 74 240-322 1-74 (74)
82 cd05867 Ig4_L1-CAM_like Fourth 99.5 4.7E-13 1E-17 88.7 10.6 72 150-222 1-75 (76)
83 cd04974 Ig3_FGFR Third immunog 99.5 2.6E-13 5.6E-18 93.0 9.5 83 240-322 1-89 (90)
84 cd05763 Ig_1 Subgroup of the i 99.5 2E-13 4.4E-18 90.3 8.7 73 243-322 1-74 (75)
85 cd05856 Ig2_FGFRL1-like Second 99.5 2E-13 4.4E-18 92.4 8.9 78 236-322 5-82 (82)
86 cd05858 Ig3_FGFR-2 Third immun 99.5 3.2E-13 7E-18 92.7 9.9 81 240-322 1-89 (90)
87 cd05731 Ig3_L1-CAM_like Third 99.5 1.8E-13 3.9E-18 89.7 8.2 70 243-322 1-70 (71)
88 cd04973 Ig1_FGFR First immunog 99.5 2.2E-13 4.7E-18 90.9 8.7 77 234-322 3-79 (79)
89 cd05760 Ig2_PTK7 Second immuno 99.5 3.7E-13 8.1E-18 89.2 9.6 72 243-323 1-75 (77)
90 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.6E-13 7.8E-18 92.1 9.7 81 31-131 10-90 (91)
91 cd05859 Ig4_PDGFR-alpha Fourth 99.5 5.6E-13 1.2E-17 92.8 10.7 79 144-223 12-100 (101)
92 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.9E-13 6.3E-18 85.9 8.4 65 153-222 1-65 (67)
93 cd05735 Ig8_DSCAM Eight immuno 99.5 7.2E-13 1.6E-17 90.2 10.9 76 150-226 1-85 (88)
94 cd04976 Ig2_VEGFR Second immun 99.5 4.3E-13 9.4E-18 87.2 8.8 69 153-222 1-69 (71)
95 cd04973 Ig1_FGFR First immunog 99.5 7.6E-13 1.6E-17 88.2 9.8 77 143-221 2-78 (79)
96 cd05736 Ig2_Follistatin_like S 99.5 6.1E-13 1.3E-17 88.3 9.3 74 243-323 1-74 (76)
97 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.7E-12 3.8E-17 89.1 11.9 79 142-221 7-89 (90)
98 cd04977 Ig1_NCAM-1_like First 99.5 1.3E-12 2.8E-17 89.8 11.1 89 27-130 3-91 (92)
99 cd05868 Ig4_NrCAM Fourth immun 99.5 9.9E-13 2.1E-17 86.9 9.9 72 150-222 1-75 (76)
100 cd07693 Ig1_Robo First immunog 99.5 1E-12 2.2E-17 92.8 10.6 99 24-131 1-99 (100)
101 cd05742 Ig1_VEGFR_like First i 99.5 7.9E-13 1.7E-17 89.5 9.5 81 240-322 1-83 (84)
102 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2E-12 4.4E-17 90.1 11.5 95 24-130 2-96 (97)
103 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.6E-12 3.6E-17 88.9 10.7 94 225-320 2-97 (98)
104 cd05892 Ig_Myotilin_C C-termin 99.4 1.2E-12 2.6E-17 85.6 9.5 68 153-221 1-74 (75)
105 cd05747 Ig5_Titin_like M5, fif 99.4 3.5E-12 7.6E-17 88.0 12.3 78 142-220 10-91 (92)
106 cd04977 Ig1_NCAM-1_like First 99.4 2.1E-12 4.6E-17 88.8 10.8 85 231-322 6-92 (92)
107 cd05730 Ig3_NCAM-1_like Third 99.4 3.5E-12 7.6E-17 88.7 12.1 80 143-223 11-93 (95)
108 cd05723 Ig4_Neogenin Fourth im 99.4 1.7E-12 3.6E-17 84.6 9.8 69 152-221 1-70 (71)
109 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.4E-12 3.1E-17 86.6 9.6 72 150-222 1-75 (76)
110 cd05849 Ig1_Contactin-1 First 99.4 1.8E-12 3.9E-17 89.0 10.2 71 240-320 19-91 (93)
111 cd05893 Ig_Palladin_C C-termin 99.4 1.5E-12 3.2E-17 85.4 9.4 68 153-221 1-74 (75)
112 cd04969 Ig5_Contactin_like Fif 99.4 1.7E-12 3.6E-17 85.3 9.4 71 150-221 1-72 (73)
113 cd05722 Ig1_Neogenin First imm 99.4 1.7E-12 3.7E-17 90.2 9.9 83 231-321 5-94 (95)
114 cd05765 Ig_3 Subgroup of the i 99.4 4.8E-13 1.1E-17 90.2 6.9 79 240-322 1-81 (81)
115 cd05854 Ig6_Contactin-2 Sixth 99.4 2.6E-12 5.6E-17 86.7 10.4 75 151-226 1-85 (85)
116 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.7E-12 3.6E-17 83.6 8.7 59 153-212 1-59 (70)
117 cd05749 Ig2_Tyro3_like Second 99.4 1.3E-12 2.8E-17 86.8 8.5 71 231-316 4-75 (81)
118 cd05756 Ig1_IL1R_like First im 99.4 5.6E-13 1.2E-17 91.6 7.0 81 235-322 9-94 (94)
119 cd05725 Ig3_Robo Third immunog 99.4 1.3E-12 2.9E-17 84.8 8.3 68 153-221 1-68 (69)
120 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.8E-12 3.8E-17 83.6 8.6 68 243-321 1-69 (72)
121 cd05724 Ig2_Robo Second immuno 99.4 3.1E-12 6.6E-17 87.4 10.4 80 142-221 3-85 (86)
122 cd05870 Ig5_NCAM-2 Fifth immun 99.4 5.2E-12 1.1E-16 88.2 11.5 96 24-130 2-97 (98)
123 cd05724 Ig2_Robo Second immuno 99.4 1.9E-12 4.2E-17 88.3 9.2 84 30-131 2-86 (86)
124 cd05891 Ig_M-protein_C C-termi 99.4 5.7E-12 1.2E-16 86.6 11.4 79 142-221 8-91 (92)
125 cd05848 Ig1_Contactin-5 First 99.4 5E-12 1.1E-16 87.2 11.1 72 149-220 18-92 (94)
126 cd05857 Ig2_FGFR Second immuno 99.4 2.7E-12 5.8E-17 87.4 9.6 77 145-222 4-85 (85)
127 cd05750 Ig_Pro_neuregulin Immu 99.4 1.9E-12 4.1E-17 85.8 8.6 73 243-319 1-74 (75)
128 cd05732 Ig5_NCAM-1_like Fifth 99.4 4.7E-12 1E-16 88.4 11.0 94 24-130 2-95 (96)
129 cd05773 Ig8_hNephrin_like Eigh 99.4 6.8E-12 1.5E-16 89.1 11.9 77 149-226 22-108 (109)
130 cd05882 Ig1_Necl-1 First (N-te 99.4 7.1E-12 1.5E-16 86.1 11.4 80 31-117 4-83 (95)
131 cd05748 Ig_Titin_like Immunogl 99.4 6.5E-12 1.4E-16 82.8 10.7 69 152-221 1-73 (74)
132 cd05876 Ig3_L1-CAM Third immun 99.4 2.5E-12 5.4E-17 83.8 8.5 69 153-222 1-70 (71)
133 cd05749 Ig2_Tyro3_like Second 99.4 4.2E-12 9.1E-17 84.3 9.6 75 142-220 5-80 (81)
134 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 4.5E-12 9.6E-17 81.7 9.5 61 150-212 1-61 (69)
135 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.1E-12 6.6E-17 84.1 8.8 70 153-222 1-73 (74)
136 cd05856 Ig2_FGFRL1-like Second 99.4 3.6E-12 7.7E-17 86.2 9.4 76 145-221 4-81 (82)
137 cd05746 Ig4_Peroxidasin Fourth 99.4 2.7E-12 5.7E-17 83.2 8.3 66 153-219 1-67 (69)
138 cd05734 Ig7_DSCAM Seventh immu 99.4 1.3E-12 2.9E-17 87.2 7.1 71 243-321 1-78 (79)
139 cd05850 Ig1_Contactin-2 First 99.4 9.7E-12 2.1E-16 85.9 11.5 71 150-220 19-92 (94)
140 cd07702 Ig2_VEGFR-1 Second imm 99.4 2.5E-12 5.5E-17 82.9 7.7 59 153-211 1-60 (72)
141 cd05752 Ig1_FcgammaR_like Frst 99.4 2.9E-12 6.2E-17 84.6 8.1 68 226-311 1-69 (78)
142 cd04970 Ig6_Contactin_like Six 99.4 4.4E-12 9.5E-17 86.1 9.3 75 151-226 1-85 (85)
143 cd05722 Ig1_Neogenin First imm 99.4 5.3E-12 1.1E-16 87.7 9.8 81 142-222 6-95 (95)
144 cd05849 Ig1_Contactin-1 First 99.4 9.6E-12 2.1E-16 85.4 10.9 71 150-220 19-91 (93)
145 cd05760 Ig2_PTK7 Second immuno 99.4 4.1E-12 8.9E-17 84.2 8.7 70 153-222 1-74 (77)
146 cd05874 Ig6_NrCAM Sixth immuno 99.4 4.5E-12 9.8E-17 83.8 8.7 67 243-316 1-71 (77)
147 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.6E-12 5.6E-17 85.2 7.5 67 243-316 1-71 (77)
148 cd05853 Ig6_Contactin-4 Sixth 99.4 5.6E-12 1.2E-16 84.0 8.9 75 151-226 1-85 (85)
149 cd05875 Ig6_hNeurofascin_like 99.4 4.6E-12 1E-16 83.7 8.4 68 243-317 1-72 (77)
150 cd05744 Ig_Myotilin_C_like Imm 99.4 8.8E-12 1.9E-16 82.0 9.6 68 153-221 1-74 (75)
151 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.2E-11 2.5E-16 81.2 9.6 65 155-220 3-76 (79)
152 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 2.3E-11 4.9E-16 82.0 11.3 81 240-323 1-83 (84)
153 cd05752 Ig1_FcgammaR_like Frst 99.3 3.1E-12 6.8E-17 84.4 6.8 76 25-130 1-77 (78)
154 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.6E-11 3.4E-16 81.8 10.1 65 155-220 3-78 (81)
155 cd07701 Ig1_Necl-3 First (N-te 99.3 1.1E-11 2.5E-16 85.4 9.6 81 31-118 4-84 (95)
156 cd04967 Ig1_Contactin First Ig 99.3 1.9E-11 4.1E-16 84.1 10.5 69 239-316 18-87 (91)
157 cd05726 Ig4_Robo Fhird immunog 99.3 1.2E-11 2.6E-16 84.9 9.1 74 150-224 1-83 (90)
158 PHA03376 BARF1; Provisional 99.3 4.3E-11 9.4E-16 88.7 12.4 139 34-175 21-164 (221)
159 cd05731 Ig3_L1-CAM_like Third 99.3 1.2E-11 2.5E-16 81.0 8.2 69 153-222 1-70 (71)
160 cd05753 Ig2_FcgammaR_like Seco 99.3 1.1E-11 2.3E-16 83.2 7.6 79 29-131 4-83 (83)
161 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 4.6E-11 1E-15 80.5 10.7 82 39-132 1-83 (84)
162 cd05743 Ig_Perlecan_D2_like Im 99.3 3.7E-11 8E-16 80.0 9.9 64 150-213 1-68 (78)
163 cd05756 Ig1_IL1R_like First im 99.3 1.9E-11 4.1E-16 84.0 8.7 77 144-221 8-93 (94)
164 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.1E-11 4.7E-16 80.8 8.6 74 243-319 1-75 (76)
165 cd04979 Ig_Semaphorin_C Immuno 99.3 3.5E-11 7.5E-16 82.5 9.4 86 31-133 3-88 (89)
166 cd05882 Ig1_Necl-1 First (N-te 99.3 5.4E-11 1.2E-15 81.7 10.2 72 234-309 6-83 (95)
167 cd05763 Ig_1 Subgroup of the i 99.3 1.8E-11 4E-16 80.9 7.7 69 153-222 1-74 (75)
168 cd05764 Ig_2 Subgroup of the i 99.3 3.6E-11 7.7E-16 79.3 8.9 71 150-221 1-73 (74)
169 cd05734 Ig7_DSCAM Seventh immu 99.3 3E-11 6.4E-16 80.7 8.5 70 153-222 1-79 (79)
170 cd04979 Ig_Semaphorin_C Immuno 99.3 6E-11 1.3E-15 81.3 10.0 81 142-223 3-87 (89)
171 cd04974 Ig3_FGFR Third immunog 99.3 3.4E-11 7.3E-16 82.5 8.6 72 150-222 1-89 (90)
172 cd05729 Ig2_FGFR_like Second i 99.3 7.2E-11 1.6E-15 80.4 10.2 81 236-322 5-85 (85)
173 cd04983 IgV_TCR_alpha_like Imm 99.3 5.3E-11 1.1E-15 85.2 9.9 89 30-118 4-92 (109)
174 cd05754 Ig3_Perlecan_like Thir 99.3 3.1E-11 6.7E-16 81.9 8.2 76 232-320 8-84 (85)
175 cd05873 Ig_Sema4D_like Immunog 99.3 6.5E-11 1.4E-15 79.2 9.4 68 142-210 3-71 (87)
176 cd05881 Ig1_Necl-2 First (N-te 99.3 1.1E-10 2.3E-15 79.5 10.4 80 32-118 5-84 (95)
177 cd05860 Ig4_SCFR Fourth immuno 99.3 1.3E-10 2.9E-15 78.8 10.7 89 233-323 11-100 (101)
178 cd05733 Ig6_L1-CAM_like Sixth 99.3 3.4E-11 7.5E-16 79.8 7.7 68 153-220 1-76 (77)
179 cd05858 Ig3_FGFR-2 Third immun 99.3 6.7E-11 1.5E-15 81.1 9.4 72 150-222 1-89 (90)
180 cd05874 Ig6_NrCAM Sixth immuno 99.2 5.8E-11 1.2E-15 78.5 8.4 68 153-220 1-76 (77)
181 cd05758 Ig5_KIRREL3-like Fifth 99.2 2.1E-10 4.5E-15 80.1 11.5 83 134-219 2-96 (98)
182 cd05736 Ig2_Follistatin_like S 99.2 1.1E-10 2.4E-15 77.4 9.5 70 153-223 1-74 (76)
183 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.6E-10 3.5E-15 80.2 10.2 91 31-130 4-94 (95)
184 cd05775 Ig_SLAM-CD84_like_N N- 99.2 4.2E-11 9E-16 83.1 7.0 91 37-132 2-97 (97)
185 cd05875 Ig6_hNeurofascin_like 99.2 9.1E-11 2E-15 77.5 8.2 68 153-220 1-76 (77)
186 cd05741 Ig_CEACAM_D1_like Firs 99.2 5.5E-11 1.2E-15 82.2 7.5 91 39-130 1-91 (92)
187 cd05742 Ig1_VEGFR_like First i 99.2 1.6E-10 3.4E-15 78.2 9.3 72 150-222 1-83 (84)
188 cd05765 Ig_3 Subgroup of the i 99.2 1E-10 2.2E-15 78.8 8.3 72 150-222 1-81 (81)
189 cd05774 Ig_CEACAM_D1 First imm 99.2 8.5E-11 1.9E-15 81.9 7.9 98 28-130 2-104 (105)
190 cd05862 Ig1_VEGFR First immuno 99.2 1.9E-10 4.2E-15 77.7 9.2 82 240-323 1-85 (86)
191 cd05750 Ig_Pro_neuregulin Immu 99.2 9.5E-11 2E-15 77.6 7.6 60 153-212 1-68 (75)
192 cd05753 Ig2_FcgammaR_like Seco 99.2 8.9E-11 1.9E-15 78.8 6.8 73 146-222 10-83 (83)
193 cd04967 Ig1_Contactin First Ig 99.2 3.6E-10 7.7E-15 77.7 10.0 68 149-216 18-88 (91)
194 cd07701 Ig1_Necl-3 First (N-te 99.2 2.6E-10 5.7E-15 78.7 9.2 84 233-321 5-94 (95)
195 cd05873 Ig_Sema4D_like Immunog 99.2 2E-10 4.2E-15 76.9 8.3 68 232-311 3-71 (87)
196 cd07690 Ig1_CD4 First immunogl 99.2 1E-10 2.2E-15 79.8 6.7 82 35-118 3-87 (94)
197 cd05879 Ig_P0 Immunoglobulin ( 99.2 9.8E-10 2.1E-14 78.3 11.6 90 31-120 5-104 (116)
198 cd05871 Ig_Semaphorin_classIII 99.2 7.2E-10 1.6E-14 75.6 10.4 84 34-132 6-89 (91)
199 PF07686 V-set: Immunoglobulin 99.1 3.6E-10 7.9E-15 81.8 9.2 105 27-131 4-114 (114)
200 cd05757 Ig2_IL1R_like Second i 99.1 5.6E-10 1.2E-14 76.1 9.3 68 145-212 5-77 (92)
201 cd05727 Ig2_Contactin-2-like S 99.1 1.4E-10 2.9E-15 78.8 6.1 74 234-314 12-86 (96)
202 cd05754 Ig3_Perlecan_like Thir 99.1 5.6E-10 1.2E-14 75.7 9.2 69 142-212 8-77 (85)
203 cd05880 Ig_EVA1 Immunoglobulin 99.1 5.6E-10 1.2E-14 80.0 9.6 100 31-130 5-114 (115)
204 cd05757 Ig2_IL1R_like Second i 99.1 3.5E-10 7.6E-15 77.2 7.9 76 236-322 6-86 (92)
205 cd05729 Ig2_FGFR_like Second i 99.1 1.1E-09 2.5E-14 74.4 10.3 76 145-221 4-84 (85)
206 cd05899 IgV_TCR_beta Immunoglo 99.1 6.9E-10 1.5E-14 79.3 9.6 86 30-117 4-93 (110)
207 cd07690 Ig1_CD4 First immunogl 99.1 2.4E-10 5.2E-15 77.9 6.7 79 236-314 3-91 (94)
208 cd05900 Ig_Aggrecan Immunoglob 99.1 1.2E-09 2.7E-14 77.1 10.1 93 38-132 1-109 (112)
209 cd04980 IgV_L_kappa Immunoglob 99.1 8.1E-10 1.8E-14 78.4 9.2 89 27-117 3-92 (106)
210 PF13895 Ig_2: Immunoglobulin 99.1 1.1E-09 2.4E-14 73.5 9.3 78 226-322 2-80 (80)
211 cd00099 IgV Immunoglobulin var 99.1 6.4E-10 1.4E-14 79.1 8.0 85 35-119 2-90 (105)
212 PF13895 Ig_2: Immunoglobulin 99.1 1.6E-09 3.4E-14 72.8 9.6 79 25-131 2-80 (80)
213 cd05715 Ig_P0-like Immunoglobu 99.1 1.9E-09 4.1E-14 77.8 10.5 90 31-120 5-104 (116)
214 cd05714 Ig_CSPGs_LP Immunoglob 99.1 1.5E-09 3.2E-14 77.1 9.8 93 38-132 1-103 (106)
215 cd07706 IgV_TCR_delta Immunogl 99.1 1.4E-09 3.1E-14 78.5 9.7 90 28-117 3-93 (116)
216 smart00408 IGc2 Immunoglobulin 99.1 9.8E-10 2.1E-14 69.9 7.9 63 239-312 1-63 (63)
217 cd05895 Ig_Pro_neuregulin-1 Im 99.1 8.6E-10 1.9E-14 73.0 7.6 60 153-212 1-69 (76)
218 PF00047 ig: Immunoglobulin do 99.1 1.1E-09 2.5E-14 69.8 7.9 63 39-115 1-64 (64)
219 cd05885 Ig2_Necl-4 Second immu 99.1 1.2E-09 2.7E-14 71.4 8.0 67 243-314 2-69 (80)
220 cd05878 Ig_Aggrecan_like Immun 99.1 2.6E-09 5.7E-14 75.8 10.4 93 38-132 1-107 (110)
221 smart00408 IGc2 Immunoglobulin 99.1 1.1E-09 2.3E-14 69.7 7.7 62 149-210 1-62 (63)
222 cd05727 Ig2_Contactin-2-like S 99.1 8.1E-10 1.8E-14 75.0 7.3 71 142-212 10-85 (96)
223 PHA02987 Ig domain OX-2-like p 99.1 4.1E-09 9E-14 79.0 11.5 97 34-135 25-125 (189)
224 cd05886 Ig1_Nectin-1_like Firs 99.0 4.1E-09 9E-14 72.7 10.7 91 41-132 2-99 (99)
225 cd05898 Ig5_KIRREL3 Fifth immu 99.0 5.5E-09 1.2E-13 71.7 11.1 86 24-122 2-91 (98)
226 cd05871 Ig_Semaphorin_classIII 99.0 4.1E-09 8.8E-14 71.9 10.5 79 144-223 5-89 (91)
227 cd05716 Ig_pIgR Immunoglobulin 99.0 1.5E-09 3.3E-14 75.8 8.6 83 35-118 3-86 (98)
228 cd05888 Ig1_Nectin-4_like Frst 99.0 3.3E-09 7.1E-14 74.1 10.1 91 41-131 2-99 (100)
229 cd05717 Ig1_Necl-1-3_like Firs 99.0 3E-09 6.6E-14 73.8 9.8 83 234-321 6-94 (95)
230 cd05846 Ig1_MRC-OX-2_like Firs 99.0 2.8E-09 6E-14 74.2 9.3 93 39-132 1-97 (97)
231 cd04984 IgV_L_lambda Immunoglo 99.0 2E-09 4.4E-14 75.1 8.7 81 35-117 2-84 (98)
232 cd04982 IgV_TCR_gamma Immunogl 99.0 2.4E-09 5.1E-14 77.5 9.1 87 31-117 5-98 (116)
233 cd05759 Ig2_KIRREL3-like Secon 99.0 4.2E-09 9E-14 70.8 9.6 76 242-320 1-80 (82)
234 PF00047 ig: Immunoglobulin do 99.0 3.7E-09 7.9E-14 67.4 8.8 63 240-307 1-64 (64)
235 cd05718 Ig1_PVR_like First imm 99.0 2.4E-09 5.3E-14 74.9 8.5 91 40-131 1-97 (98)
236 cd05877 Ig_LP_like Immunoglobu 99.0 3.8E-09 8.3E-14 75.0 9.6 93 38-132 1-103 (106)
237 cd05885 Ig2_Necl-4 Second immu 99.0 4E-09 8.6E-14 69.0 8.7 60 153-212 2-68 (80)
238 cd05712 Ig_Siglec_N Immunoglob 99.0 5E-09 1.1E-13 75.8 10.2 87 31-117 6-101 (119)
239 smart00409 IG Immunoglobulin. 99.0 1.1E-08 2.3E-13 69.6 11.4 81 235-322 4-85 (86)
240 smart00410 IG_like Immunoglobu 99.0 1.1E-08 2.3E-13 69.6 11.4 81 235-322 4-85 (86)
241 cd05751 Ig1_LILRB1_like First 99.0 3.5E-09 7.6E-14 72.6 8.7 87 24-131 2-90 (91)
242 cd05713 Ig_MOG_like Immunoglob 99.0 5.4E-09 1.2E-13 73.4 9.8 90 39-131 1-99 (100)
243 smart00410 IG_like Immunoglobu 99.0 1.3E-08 2.7E-13 69.2 10.8 83 32-131 2-85 (86)
244 smart00409 IG Immunoglobulin. 99.0 1.3E-08 2.7E-13 69.2 10.8 83 32-131 2-85 (86)
245 cd05887 Ig1_Nectin-3_like Firs 99.0 1E-08 2.2E-13 70.1 9.8 91 40-131 1-95 (96)
246 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 8.3E-09 1.8E-13 70.3 8.8 75 32-119 8-93 (104)
247 cd05845 Ig2_L1-CAM_like Second 98.9 3.8E-09 8.1E-14 71.7 6.8 70 32-119 11-82 (95)
248 cd05845 Ig2_L1-CAM_like Second 98.9 4.4E-09 9.5E-14 71.3 6.8 75 138-212 6-84 (95)
249 PF13927 Ig_3: Immunoglobulin 98.9 6.3E-09 1.4E-13 68.8 7.3 74 225-309 1-75 (75)
250 cd05872 Ig_Sema4B_like Immunog 98.9 1.3E-08 2.7E-13 67.7 8.2 79 143-222 4-82 (85)
251 cd05902 Ig_Neurocan Immunoglob 98.9 2.5E-08 5.4E-13 70.2 10.1 94 38-132 1-107 (110)
252 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.5E-08 5.5E-13 70.7 10.3 86 239-324 1-104 (106)
253 cd05897 Ig2_IL1R2_like Second 98.9 1E-08 2.2E-13 69.8 7.6 81 34-131 5-93 (95)
254 PHA03376 BARF1; Provisional 98.9 6.4E-08 1.4E-12 72.2 11.8 121 144-265 20-164 (221)
255 cd05872 Ig_Sema4B_like Immunog 98.9 1.9E-08 4.1E-13 66.8 8.2 78 33-131 5-82 (85)
256 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.3E-08 5E-13 68.2 8.6 69 144-212 9-95 (104)
257 cd05862 Ig1_VEGFR First immuno 98.9 2.5E-08 5.5E-13 67.4 8.8 73 150-223 1-85 (86)
258 cd05860 Ig4_SCFR Fourth immuno 98.9 1E-07 2.2E-12 64.9 11.5 80 143-223 11-100 (101)
259 cd05901 Ig_Versican Immunoglob 98.9 5.8E-08 1.3E-12 68.4 10.7 93 39-132 2-114 (117)
260 cd07700 IgV_CD8_beta Immunoglo 98.8 3.4E-08 7.4E-13 70.0 9.4 82 35-116 2-92 (107)
261 cd05897 Ig2_IL1R2_like Second 98.8 1.2E-08 2.6E-13 69.5 5.8 71 236-315 6-82 (95)
262 cd05883 Ig2_Necl-2 Second immu 98.8 7.7E-08 1.7E-12 63.2 9.4 72 153-224 2-81 (82)
263 cd05711 Ig_FcalphaRI Immunoglo 98.8 5.1E-08 1.1E-12 67.1 9.0 74 25-116 2-75 (94)
264 cd05877 Ig_LP_like Immunoglobu 98.8 1.3E-07 2.8E-12 67.1 11.2 86 239-324 1-104 (106)
265 cd05751 Ig1_LILRB1_like First 98.8 5E-08 1.1E-12 66.8 8.1 73 226-310 3-75 (91)
266 cd05889 Ig1_DNAM-1_like First 98.8 1.3E-07 2.9E-12 64.6 10.0 89 40-129 1-93 (96)
267 cd05900 Ig_Aggrecan Immunoglob 98.8 1.8E-07 4E-12 66.1 10.7 86 239-324 1-110 (112)
268 cd05878 Ig_Aggrecan_like Immun 98.7 2E-07 4.4E-12 66.2 10.9 86 239-324 1-108 (110)
269 cd05713 Ig_MOG_like Immunoglob 98.7 1.2E-07 2.6E-12 66.5 9.6 83 240-322 1-99 (100)
270 cd05881 Ig1_Necl-2 First (N-te 98.7 1.5E-07 3.4E-12 64.1 9.5 73 233-309 5-83 (95)
271 cd05759 Ig2_KIRREL3-like Secon 98.7 1.2E-07 2.5E-12 63.7 9.0 70 152-221 1-81 (82)
272 cd04981 IgV_H Immunoglobulin ( 98.7 1E-07 2.2E-12 68.6 9.1 87 30-116 3-96 (117)
273 cd05774 Ig_CEACAM_D1 First imm 98.7 6E-08 1.3E-12 67.7 7.4 89 232-322 5-105 (105)
274 PF13927 Ig_3: Immunoglobulin 98.7 3.7E-08 8E-13 65.0 6.1 74 24-117 1-75 (75)
275 cd05883 Ig2_Necl-2 Second immu 98.7 2.7E-07 5.9E-12 60.6 9.7 78 243-324 2-81 (82)
276 cd00098 IgC Immunoglobulin Con 98.7 1.1E-07 2.4E-12 66.0 7.9 74 238-313 11-87 (95)
277 cd05720 Ig_CD8_alpha Immunoglo 98.7 1E-07 2.3E-12 67.0 7.6 80 35-116 2-89 (104)
278 PHA03270 envelope glycoprotein 98.7 4.7E-05 1E-09 64.7 24.1 159 96-265 182-360 (466)
279 cd05879 Ig_P0 Immunoglobulin ( 98.7 3.6E-07 7.7E-12 65.2 9.7 83 233-315 6-107 (116)
280 cd05761 Ig2_Necl-1-4_like Seco 98.6 3.1E-07 6.8E-12 61.4 8.8 69 243-314 2-71 (82)
281 cd05886 Ig1_Nectin-1_like Firs 98.6 6.6E-07 1.4E-11 61.8 10.2 37 286-322 61-98 (99)
282 cd05902 Ig_Neurocan Immunoglob 98.6 6.3E-07 1.4E-11 63.1 10.1 86 239-324 1-108 (110)
283 cd05718 Ig1_PVR_like First imm 98.6 4.2E-07 9.2E-12 63.5 9.3 80 241-322 1-97 (98)
284 PHA03269 envelope glycoprotein 98.6 1.1E-05 2.5E-10 69.3 19.2 171 84-265 277-470 (566)
285 cd05741 Ig_CEACAM_D1_like Firs 98.6 2.4E-07 5.3E-12 63.8 7.2 72 150-221 1-91 (92)
286 smart00406 IGv Immunoglobulin 98.6 2.6E-07 5.7E-12 62.0 7.2 75 41-115 1-81 (81)
287 cd04983 IgV_TCR_alpha_like Imm 98.6 5E-07 1.1E-11 64.5 8.8 79 231-312 4-94 (109)
288 cd05901 Ig_Versican Immunoglob 98.6 2E-06 4.4E-11 60.7 11.2 39 286-324 77-115 (117)
289 cd05775 Ig_SLAM-CD84_like_N N- 98.5 4.8E-07 1E-11 62.7 7.8 85 238-322 2-96 (97)
290 cd07705 Ig2_Necl-1 Second immu 98.5 1.2E-06 2.6E-11 58.6 9.2 69 243-314 2-72 (83)
291 PHA03273 envelope glycoprotein 98.5 2E-05 4.3E-10 67.6 18.1 159 95-264 197-377 (486)
292 cd05884 Ig2_Necl-3 Second immu 98.5 7E-07 1.5E-11 59.6 7.7 70 243-314 2-72 (83)
293 cd05888 Ig1_Nectin-4_like Frst 98.5 1.2E-06 2.6E-11 61.1 9.2 81 242-322 2-99 (100)
294 cd05846 Ig1_MRC-OX-2_like Firs 98.5 1.1E-06 2.4E-11 61.0 8.6 83 240-322 1-96 (97)
295 cd05755 Ig2_ICAM-1_like Second 98.5 1.2E-06 2.6E-11 60.1 8.4 83 25-121 2-87 (100)
296 cd05880 Ig_EVA1 Immunoglobulin 98.5 1.8E-06 4E-11 61.9 9.8 81 233-313 6-104 (115)
297 cd05772 IgC_SIRP Signal-regula 98.5 2.6E-06 5.6E-11 60.2 10.0 79 234-315 15-96 (111)
298 cd05899 IgV_TCR_beta Immunoglo 98.5 8.4E-07 1.8E-11 63.4 7.6 81 231-312 4-96 (110)
299 cd05721 IgV_CTLA-4 Immunoglobu 98.5 1.9E-06 4.1E-11 59.9 8.6 87 29-115 3-93 (115)
300 cd05887 Ig1_Nectin-3_like Firs 98.4 3.8E-06 8.3E-11 57.4 9.7 81 241-322 1-95 (96)
301 cd05755 Ig2_ICAM-1_like Second 98.4 3.2E-06 6.9E-11 58.0 9.3 80 230-314 6-88 (100)
302 PF08205 C2-set_2: CD80-like C 98.4 3.7E-06 8E-11 57.4 9.7 73 240-314 14-87 (89)
303 cd05715 Ig_P0-like Immunoglobu 98.4 2.6E-06 5.7E-11 61.4 9.0 82 232-313 5-105 (116)
304 cd05711 Ig_FcalphaRI Immunoglo 98.4 4.1E-06 8.9E-11 57.6 9.3 63 145-208 10-76 (94)
305 PHA03271 envelope glycoprotein 98.4 8.1E-05 1.8E-09 62.9 18.2 171 84-265 195-386 (490)
306 cd07694 Ig2_CD4 Second immunog 98.4 9.9E-06 2.1E-10 53.1 9.8 76 33-131 8-85 (88)
307 cd00099 IgV Immunoglobulin var 98.4 2.7E-06 5.8E-11 60.3 7.9 74 236-312 2-91 (105)
308 cd07699 IgC_L Immunoglobulin C 98.3 3.1E-06 6.8E-11 58.8 7.9 76 236-313 13-91 (100)
309 cd04980 IgV_L_kappa Immunoglob 98.3 2.8E-06 6E-11 60.2 7.7 80 231-310 6-93 (106)
310 PF07686 V-set: Immunoglobulin 98.3 2.3E-06 5E-11 61.6 7.5 91 232-322 8-114 (114)
311 cd05761 Ig2_Necl-1-4_like Seco 98.3 6.7E-06 1.4E-10 55.0 8.9 60 153-212 2-70 (82)
312 PHA02987 Ig domain OX-2-like p 98.3 7.9E-06 1.7E-10 61.7 9.1 90 235-324 25-123 (189)
313 cd07694 Ig2_CD4 Second immunog 98.3 1.2E-05 2.6E-10 52.7 8.8 76 235-323 9-86 (88)
314 cd07696 IgC_CH3 CH3 domain (th 98.3 7.1E-06 1.5E-10 56.4 8.0 79 235-315 9-90 (96)
315 cd00098 IgC Immunoglobulin Con 98.3 3.5E-06 7.5E-11 58.4 6.5 74 37-120 11-86 (95)
316 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.9E-05 4E-10 54.3 9.8 69 240-313 14-85 (93)
317 cd04982 IgV_TCR_gamma Immunogl 98.2 1.1E-05 2.5E-10 58.2 9.1 76 232-310 5-99 (116)
318 cd05847 IgC_CH2_IgE CH2 domain 98.2 1.2E-05 2.7E-10 54.9 8.5 75 239-315 13-90 (94)
319 smart00407 IGc1 Immunoglobulin 98.2 1.2E-05 2.6E-10 52.7 7.9 68 243-312 2-72 (75)
320 cd04984 IgV_L_lambda Immunoglo 98.2 9.1E-06 2E-10 56.6 7.6 75 236-310 2-85 (98)
321 cd05889 Ig1_DNAM-1_like First 98.2 2.6E-05 5.7E-10 53.4 9.4 80 241-321 1-94 (96)
322 cd07705 Ig2_Necl-1 Second immu 98.2 2.8E-05 6.1E-10 52.0 9.5 60 153-212 2-71 (83)
323 cd05768 IgC_CH4 CH4 domain (fo 98.2 1.3E-05 2.9E-10 55.8 8.1 77 236-314 12-94 (102)
324 cd00096 Ig Immunoglobulin doma 98.2 1.9E-05 4E-10 51.0 8.3 67 243-312 1-67 (74)
325 cd05772 IgC_SIRP Signal-regula 98.1 2.1E-05 4.5E-10 55.6 8.4 81 131-211 2-93 (111)
326 cd05769 IgC_TCR_beta T cell re 98.1 2.3E-05 5E-10 55.6 8.5 81 237-319 15-100 (115)
327 cd05770 IgC_beta2m Class I maj 98.1 7.1E-05 1.5E-09 50.9 10.6 70 238-312 13-84 (93)
328 PF07654 C1-set: Immunoglobuli 98.1 3.1E-05 6.7E-10 52.0 8.3 71 239-314 7-80 (83)
329 cd05766 IgC_MHC_II_beta Class 98.1 0.00011 2.4E-09 50.4 11.0 72 238-314 12-86 (94)
330 cd04985 IgC_CH1 CH1 domain (fi 98.1 4.6E-05 9.9E-10 52.3 9.0 71 239-311 15-87 (95)
331 cd05767 IgC_MHC_II_alpha Class 98.1 0.00014 3.1E-09 49.6 11.2 69 239-312 14-85 (94)
332 cd00096 Ig Immunoglobulin doma 98.1 2E-05 4.4E-10 50.8 6.9 66 42-119 1-66 (74)
333 cd05716 Ig_pIgR Immunoglobulin 98.1 1.6E-05 3.5E-10 55.4 6.5 66 145-210 2-87 (98)
334 KOG1480|consensus 98.1 1.7E-06 3.6E-11 78.4 1.8 185 23-222 23-218 (909)
335 cd05884 Ig2_Necl-3 Second immu 98.0 4.3E-05 9.2E-10 51.0 8.1 60 153-212 2-71 (83)
336 cd05719 Ig2_PVR_like Second im 98.0 5.9E-05 1.3E-09 51.7 8.6 73 241-318 16-89 (95)
337 PHA02982 hypothetical protein; 98.0 0.0016 3.6E-08 49.9 16.7 138 31-175 31-173 (251)
338 cd04986 IgC_CH2 CH2 domain (se 98.0 3.4E-05 7.4E-10 52.8 7.1 74 235-312 14-90 (99)
339 cd07706 IgV_TCR_delta Immunogl 98.0 5.7E-05 1.2E-09 54.5 8.8 77 231-310 5-94 (116)
340 cd07699 IgC_L Immunoglobulin C 98.0 4.3E-05 9.3E-10 53.1 7.6 86 24-119 1-89 (100)
341 cd07700 IgV_CD8_beta Immunoglo 98.0 3E-05 6.5E-10 54.9 6.5 63 146-208 2-93 (107)
342 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.4E-09 50.4 9.0 80 24-119 2-83 (93)
343 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00014 3E-09 49.6 8.7 70 142-211 8-85 (97)
344 PF08205 C2-set_2: CD80-like C 97.9 0.0001 2.2E-09 50.2 8.1 63 150-212 14-86 (89)
345 smart00407 IGc1 Immunoglobulin 97.9 0.00021 4.5E-09 46.8 9.1 60 152-211 1-72 (75)
346 cd05720 Ig_CD8_alpha Immunoglo 97.9 6.8E-05 1.5E-09 52.7 7.0 73 237-309 3-90 (104)
347 cd07703 Ig2_Nectin-2_like Seco 97.8 0.00016 3.4E-09 49.4 8.1 76 241-321 16-92 (95)
348 cd05768 IgC_CH4 CH4 domain (fo 97.8 6.2E-05 1.3E-09 52.5 6.2 65 148-212 14-93 (102)
349 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00015 3.2E-09 52.5 8.2 79 232-310 6-102 (119)
350 cd07697 IgC_TCR_gamma T cell r 97.8 0.00024 5.2E-09 48.7 8.7 70 237-311 13-85 (96)
351 cd05767 IgC_MHC_II_alpha Class 97.8 0.0004 8.6E-09 47.5 9.2 82 24-119 1-84 (94)
352 cd05766 IgC_MHC_II_beta Class 97.8 0.00048 1E-08 47.2 9.6 71 36-119 11-83 (94)
353 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00018 3.9E-09 44.6 6.3 61 149-224 5-65 (69)
354 cd05769 IgC_TCR_beta T cell re 97.7 0.00023 5E-09 50.5 7.8 66 147-212 15-94 (115)
355 cd05770 IgC_beta2m Class I maj 97.7 0.00088 1.9E-08 45.6 9.4 80 25-119 2-83 (93)
356 PF11465 Receptor_2B4: Natural 97.6 0.00014 3.1E-09 49.3 5.2 96 33-132 7-107 (108)
357 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.0003 6.4E-09 48.2 7.0 64 149-212 13-88 (94)
358 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00025 5.5E-09 48.7 6.1 65 147-211 11-87 (96)
359 cd04981 IgV_H Immunoglobulin ( 97.6 0.00024 5.2E-09 51.1 6.3 67 142-208 4-97 (117)
360 cd07703 Ig2_Nectin-2_like Seco 97.6 0.0011 2.3E-08 45.4 9.0 62 151-212 16-84 (95)
361 cd05719 Ig2_PVR_like Second im 97.6 0.00084 1.8E-08 46.0 8.3 72 150-221 15-94 (95)
362 PHA02914 Immunoglobulin-like d 97.5 0.046 9.9E-07 46.7 26.0 161 144-313 273-469 (500)
363 cd07697 IgC_TCR_gamma T cell r 97.5 0.0012 2.6E-08 45.3 8.4 63 147-211 13-86 (96)
364 smart00406 IGv Immunoglobulin 97.5 0.00066 1.4E-08 45.2 6.9 66 242-307 1-81 (81)
365 PF08204 V-set_CD47: CD47 immu 97.5 0.0002 4.4E-09 51.2 4.5 91 36-131 24-119 (130)
366 PF08204 V-set_CD47: CD47 immu 97.4 0.00048 1E-08 49.4 6.0 85 238-323 25-120 (130)
367 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.0017 3.6E-08 44.3 8.1 76 234-314 10-87 (97)
368 PF07654 C1-set: Immunoglobuli 97.4 0.0017 3.6E-08 43.5 8.2 61 149-212 7-79 (83)
369 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.002 4.4E-08 44.2 8.2 71 38-119 15-87 (95)
370 cd04986 IgC_CH2 CH2 domain (se 97.3 0.00078 1.7E-08 46.2 5.8 65 147-211 16-90 (99)
371 TIGR00864 PCC polycystin catio 97.3 0.38 8.3E-06 52.1 29.9 274 27-359 1700-1990(2740)
372 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00067 1.4E-08 41.8 4.5 50 149-208 6-55 (65)
373 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.001 2.2E-08 41.3 5.1 49 240-309 6-54 (69)
374 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00076 1.6E-08 41.6 3.8 51 239-310 6-56 (65)
375 PHA02633 hypothetical protein; 97.2 0.0017 3.7E-08 39.2 5.2 40 287-326 17-56 (63)
376 PHA03271 envelope glycoprotein 97.1 0.064 1.4E-06 46.1 16.0 125 186-312 206-336 (490)
377 PHA03270 envelope glycoprotein 97.1 0.034 7.3E-07 48.1 14.2 122 186-310 181-307 (466)
378 PHA02633 hypothetical protein; 97.0 0.002 4.4E-08 38.9 4.7 37 97-134 19-55 (63)
379 TIGR00864 PCC polycystin catio 97.0 0.76 1.6E-05 50.1 26.3 234 103-359 1834-2080(2740)
380 KOG1480|consensus 97.0 0.00022 4.8E-09 65.2 0.6 165 142-316 31-211 (909)
381 PHA03273 envelope glycoprotein 97.0 0.04 8.7E-07 48.1 13.9 123 187-311 198-325 (486)
382 PHA03269 envelope glycoprotein 97.0 0.042 9.2E-07 48.2 14.0 120 187-310 289-416 (566)
383 cd07689 Ig2_VCAM-1 Second immu 96.8 0.0091 2E-07 40.5 7.1 73 237-312 12-87 (99)
384 cd07689 Ig2_VCAM-1 Second immu 96.8 0.0089 1.9E-07 40.6 6.8 64 147-211 12-87 (99)
385 PHA03042 CD47-like protein; Pr 96.6 0.019 4.1E-07 46.3 8.5 71 239-323 30-105 (286)
386 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.016 3.4E-07 40.7 6.1 66 143-208 6-95 (115)
387 PHA02914 Immunoglobulin-like d 96.2 0.47 1E-05 40.8 14.6 170 35-212 275-469 (500)
388 KOG4597|consensus 95.9 0.012 2.5E-07 51.3 4.5 87 234-325 205-294 (560)
389 KOG0613|consensus 95.9 0.03 6.5E-07 55.2 7.6 209 147-364 241-481 (1205)
390 PF02124 Marek_A: Marek's dise 95.5 0.98 2.1E-05 35.7 14.0 92 166-265 8-116 (211)
391 PHA03042 CD47-like protein; Pr 95.2 0.1 2.2E-06 42.3 7.1 61 149-212 30-95 (286)
392 PHA03189 UL14 tegument protein 95.1 0.37 8E-06 39.8 10.1 98 31-129 59-166 (348)
393 cd05890 Ig2_Nectin-1_like Seco 95.1 0.15 3.3E-06 34.1 6.5 75 242-321 22-97 (98)
394 PHA02982 hypothetical protein; 94.9 1.4 3E-05 34.5 12.8 156 146-310 35-219 (251)
395 KOG0613|consensus 94.8 0.15 3.2E-06 50.6 8.5 207 97-313 279-518 (1205)
396 PHA03283 envelope glycoprotein 94.8 0.62 1.3E-05 41.8 11.3 38 95-133 133-170 (542)
397 PF07354 Sp38: Zona-pellucida- 94.6 0.059 1.3E-06 43.5 4.4 50 253-311 11-60 (271)
398 PF06328 Lep_receptor_Ig: Ig-l 94.3 0.51 1.1E-05 31.8 7.8 69 29-115 8-81 (89)
399 KOG4597|consensus 94.0 0.11 2.3E-06 45.6 5.0 93 27-131 199-291 (560)
400 PF03921 ICAM_N: Intercellular 93.4 1.6 3.5E-05 29.4 11.1 86 26-136 5-90 (91)
401 PHA03282 envelope glycoprotein 93.4 5.3 0.00012 35.6 14.0 39 94-132 122-161 (540)
402 PHA02865 MHC-like TNF binding 93.2 0.76 1.6E-05 39.2 8.6 21 41-61 216-238 (338)
403 PF07354 Sp38: Zona-pellucida- 93.2 0.14 3.1E-06 41.4 4.1 48 163-210 11-60 (271)
404 PHA03286 envelope glycoprotein 93.1 5.8 0.00013 35.2 13.8 76 96-171 127-225 (492)
405 PHA02865 MHC-like TNF binding 93.0 0.65 1.4E-05 39.6 7.9 21 242-262 216-238 (338)
406 PF11465 Receptor_2B4: Natural 92.0 0.71 1.5E-05 31.8 5.7 38 186-223 70-107 (108)
407 KOG1026|consensus 91.9 0.35 7.5E-06 46.0 5.5 160 145-326 202-366 (774)
408 PF05790 C2-set: Immunoglobuli 91.8 2.5 5.5E-05 27.8 8.5 36 287-322 42-78 (80)
409 cd05890 Ig2_Nectin-1_like Seco 90.6 1.6 3.6E-05 29.4 6.2 59 153-211 23-88 (98)
410 PHA03240 envelope glycoprotein 89.9 0.65 1.4E-05 36.1 4.4 81 33-114 32-123 (258)
411 PF06328 Lep_receptor_Ig: Ig-l 89.4 3.8 8.3E-05 27.6 7.4 63 146-208 14-83 (89)
412 PF05790 C2-set: Immunoglobuli 89.3 4.5 9.8E-05 26.6 8.7 38 165-208 27-64 (80)
413 PF03921 ICAM_N: Intercellular 87.8 6.6 0.00014 26.5 10.1 81 230-326 8-89 (91)
414 PF02480 Herpes_gE: Alphaherpe 87.5 1.9 4.1E-05 38.9 6.5 38 96-133 89-126 (439)
415 PHA03052 Hypothetical protein; 86.4 2 4.4E-05 26.7 4.1 33 32-64 5-40 (69)
416 PHA03052 Hypothetical protein; 86.1 2.9 6.2E-05 26.0 4.7 34 143-176 5-41 (69)
417 PHA03112 IL-18 binding protein 85.4 1.5 3.2E-05 32.1 3.8 28 36-63 35-64 (141)
418 PF02010 REJ: REJ domain; Int 85.0 2.1 4.6E-05 39.0 5.8 252 97-349 39-326 (440)
419 PHA03189 UL14 tegument protein 83.9 22 0.00047 30.0 10.1 36 288-324 134-169 (348)
420 PF02440 Adeno_E3_CR1: Adenovi 80.7 9.9 0.00022 23.6 5.6 21 36-60 2-22 (63)
421 PHA03281 envelope glycoprotein 79.7 51 0.0011 30.4 14.2 76 96-171 298-394 (642)
422 PF06214 SLAM: Signaling lymph 78.1 16 0.00034 25.4 6.3 79 34-116 35-123 (126)
423 KOG0200|consensus 77.5 65 0.0014 31.0 12.8 105 96-208 13-138 (609)
424 PRK14081 triple tyrosine motif 76.8 74 0.0016 30.7 26.1 272 36-353 302-605 (667)
425 PF02124 Marek_A: Marek's dise 75.8 39 0.00085 27.0 14.0 105 95-208 38-159 (211)
426 PHA03282 envelope glycoprotein 74.9 6.7 0.00015 35.0 5.0 29 97-125 334-362 (540)
427 PHA03112 IL-18 binding protein 72.9 7.9 0.00017 28.4 4.2 79 239-317 37-125 (141)
428 PRK14081 triple tyrosine motif 69.3 1.1E+02 0.0024 29.5 20.8 198 34-260 396-612 (667)
429 PF06832 BiPBP_C: Penicillin-B 68.6 33 0.00071 23.0 8.6 56 242-316 31-86 (89)
430 PF02480 Herpes_gE: Alphaherpe 67.6 10 0.00022 34.4 4.8 30 97-126 270-299 (439)
431 PF12988 DUF3872: Domain of un 67.1 47 0.001 24.3 10.2 33 31-63 39-76 (137)
432 KOG0200|consensus 66.7 50 0.0011 31.8 9.4 123 186-316 12-145 (609)
433 PHA03283 envelope glycoprotein 62.5 27 0.00059 31.9 6.2 38 287-324 133-170 (542)
434 PF10430 Ig_Tie2_1: Tie-2 Ig-l 58.5 52 0.0011 21.9 7.5 71 242-314 17-90 (96)
435 PHA03281 envelope glycoprotein 52.3 1.2E+02 0.0027 28.1 8.5 77 186-262 297-395 (642)
436 PF07172 GRP: Glycine rich pro 50.0 9.4 0.0002 26.1 1.2 13 1-13 1-13 (95)
437 PHA02935 Hypothetical protein; 48.1 1.1E+02 0.0024 23.9 6.7 58 166-223 68-138 (349)
438 smart00089 PKD Repeats in poly 47.1 75 0.0016 20.4 6.3 63 239-322 13-78 (79)
439 PHA03240 envelope glycoprotein 46.6 20 0.00043 28.3 2.5 20 186-205 104-123 (258)
440 PF01688 Herpes_gI: Alphaherpe 45.3 75 0.0016 24.3 5.3 26 94-119 122-147 (161)
441 PHA03286 envelope glycoprotein 44.1 1.4E+02 0.003 27.1 7.4 37 287-323 126-163 (492)
442 PF11049 KSHV_K1: Glycoprotein 43.1 13 0.00029 23.0 0.9 21 344-364 2-23 (71)
443 PF00801 PKD: PKD domain; Int 37.1 1E+02 0.0023 19.1 6.4 29 235-263 6-34 (69)
444 COG5475 Uncharacterized small 37.0 58 0.0013 19.4 2.8 29 288-318 18-46 (60)
445 PHA03290 envelope glycoprotein 34.8 88 0.0019 26.9 4.7 28 93-120 126-153 (357)
446 PF05955 Herpes_gp2: Equine he 33.1 2.3E+02 0.005 21.9 10.9 64 246-311 113-179 (226)
447 KOG1026|consensus 31.7 70 0.0015 31.3 4.2 76 234-326 201-276 (774)
448 PF15240 Pro-rich: Proline-ric 30.4 42 0.00091 26.0 2.1 18 6-23 1-18 (179)
449 PF02010 REJ: REJ domain; Int 28.2 48 0.001 30.3 2.6 110 153-264 3-127 (440)
450 PF10572 UPF0556: Uncharacteri 27.9 2.7E+02 0.0059 21.1 10.0 16 105-120 69-84 (158)
451 PF01688 Herpes_gI: Alphaherpe 27.4 1.6E+02 0.0035 22.5 4.7 35 287-321 123-157 (161)
452 PHA03292 envelope glycoprotein 27.4 1.9E+02 0.0042 25.5 5.6 53 98-150 130-183 (413)
453 PF06832 BiPBP_C: Penicillin-B 24.4 2.2E+02 0.0048 18.9 8.7 54 152-213 31-84 (89)
454 PHA03289 envelope glycoprotein 21.5 2E+02 0.0043 24.8 4.5 33 98-131 124-156 (352)
455 KOG3611|consensus 21.3 2.2E+02 0.0047 28.2 5.5 22 97-118 613-634 (737)
456 PHA03290 envelope glycoprotein 20.8 2.6E+02 0.0057 24.3 5.1 42 286-327 127-168 (357)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.7e-43 Score=322.09 Aligned_cols=333 Identities=22% Similarity=0.363 Sum_probs=277.5
Q ss_pred cccCCeeeeecc-ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQ-EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
...+|.+.+..+ ......|+.|.|.|-+.|.|.++|.|.|.+...... +... ......|.
T Consensus 237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~---------------r~~~----~~~~~vL~ 297 (1051)
T KOG3513|consen 237 REYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR---------------RATY----SNYGKVLK 297 (1051)
T ss_pred cccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc---------------ceee----eccccEEE
Confidence 345566666544 556889999999999999999999999988743111 1111 11233899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+++.+|+|.|+|.+.|..+ .....+.+.|+.+|..... +....+..|++++|.|.+.|.|.|.++|++||.++...
T Consensus 298 I~nv~~~D~G~Y~C~AeN~~G-~~~~~~~v~v~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~ 375 (1051)
T KOG3513|consen 298 IPNVQYEDAGEYECIAENSRG-SATHSGHVTVYAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPA 375 (1051)
T ss_pred ecccCcCCCeEEEEEEecccc-cceeeEEEEEecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCcc
Confidence 999999999999999998866 6688899999999987764 55677889999999999999999999999999999876
Q ss_pred Cc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec-ceEeeCCCc--ccccCCCcEEEEEEEEecC
Q psy8823 180 GG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA-PVITVPKPR--LGQALQYDMDLECHVEAYP 253 (386)
Q Consensus 180 ~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~--~~~~~g~~~~l~C~~~g~p 253 (386)
.. .....+.|.|.+++..|+|.|+|.|+|..|. ....+.|.|... |.+...+.. ..+..|..+.|.|...+.|
T Consensus 376 ~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP 454 (1051)
T KOG3513|consen 376 ERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP 454 (1051)
T ss_pred CCCcceEEeCCEEEEEecccccCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC
Confidence 66 6778899999999999999999999999998 567788888765 666554433 4677899999999999999
Q ss_pred CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCC
Q psy8823 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333 (386)
Q Consensus 254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 333 (386)
.|.+.|.+++.. +.++.++.+. .+++|.|.+++.+|+|.|+|.|+|..|.++....|.|++.+.....+.
T Consensus 455 ~p~~~W~k~~~~--~~~~~r~~i~--------edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~ 524 (1051)
T KOG3513|consen 455 KPKVSWLKGGEK--LLQSGRIRIL--------EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPS 524 (1051)
T ss_pred cceEEEEcCCcc--cccCceEEEC--------CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccc
Confidence 999999999985 7777777764 588999999999999999999999999999999999999998888778
Q ss_pred CceeecCcceeeeEEecCCC-----CCcccccceeeec--ccce---------eeeeeeeecccccCC
Q psy8823 334 PSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNCS--SLLY---------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 334 ~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~~--~~~~---------~~~i~~v~~~d~~~~ 385 (386)
...+..|..+.|.|.+...+ +.|.+||..+... ..+. .|+|.+|..+|+.-|
T Consensus 525 ~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y 592 (1051)
T KOG3513|consen 525 NTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKY 592 (1051)
T ss_pred hhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceE
Confidence 88899999999999998777 5899999965533 1111 399999999998765
No 2
>KOG3513|consensus
Probab=100.00 E-value=3.3e-41 Score=308.53 Aligned_cols=331 Identities=26% Similarity=0.382 Sum_probs=258.4
Q ss_pred Ceeeeeccceee-ecCC--cEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIK-DIGG--TVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v-~~G~--~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.|..++.+..+ ..-+ .+.|.|.+.|+|.+.+.|++++....... ..++... .++|.|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~------------~~~~~~~------~G~lvI~ 101 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTE------------YPRVSVL------GGTLVIT 101 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccccc------------ccceeee------cCceEec
Confidence 777777775543 2323 39999999999999999999997753211 1111111 2266666
Q ss_pred ccC-CCCCeEEEEEeEEcccceeeeEEEEEEe------------------------------------------------
Q psy8823 102 DIQ-ETDAGYYRCQVIIGINNKISAEVDLQVR------------------------------------------------ 132 (386)
Q Consensus 102 ~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------------------------------------ 132 (386)
+.. ..|.|.|+|.+.|..+...+..+.|...
T Consensus 102 ~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~ 181 (1051)
T KOG3513|consen 102 NPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQ 181 (1051)
T ss_pred CCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccc
Confidence 666 7788888888877655544443333320
Q ss_pred ---------------------------------------------------------cCCeeecCCCceEEEeCCccEEE
Q psy8823 133 ---------------------------------------------------------RPPVISDNSTRSLVVSEGQPVQL 155 (386)
Q Consensus 133 ---------------------------------------------------------~~p~~~~~~~~~~~~~~g~~v~l 155 (386)
.+|.+....+.......|+.+.|
T Consensus 182 ~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~L 261 (1051)
T KOG3513|consen 182 IDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKL 261 (1051)
T ss_pred cCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEE
Confidence 11112222233456678999999
Q ss_pred EEEeeeeCCCeEEEEEcCeeeCCC-CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCc
Q psy8823 156 ECFAGGHPTPRISWRRENNAILPT-GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234 (386)
Q Consensus 156 ~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~ 234 (386)
.|-+.|+|-|++.|.|.+...... ......+..|.|.+++.+|+|.|.|.++|..|. ....+.+.|+.+|.....+..
T Consensus 262 ECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d 340 (1051)
T KOG3513|consen 262 ECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQD 340 (1051)
T ss_pred EEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccce
Confidence 999999999999999988853332 233345778999999999999999999999995 778899999999999999999
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce---eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH---YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
..+..|+.+++.|.+.|.|.|+++|++|+.+ +....+ +.+ ..+.|.|++++..|+|.|.|.|+|..
T Consensus 341 ~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~p--l~~~~r~~~~~i---------~~g~L~is~v~~~dsg~YQC~A~Nk~ 409 (1051)
T KOG3513|consen 341 TEADTGSNVTLECKASGKPNPTVKWLKNGEP--LEPAERDPRYKI---------DDGTLIISNVQESDSGVYQCIAENKY 409 (1051)
T ss_pred eEecCCCCeEEEEEecCCCCCceEEeeCCee--cCccCCCcceEE---------eCCEEEEEecccccCeEEEeeeeccc
Confidence 9999999999999999999999999999998 444433 333 57889999999999999999999999
Q ss_pred CceeeEEEEEEEec-CCCCCCCCC--ceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecc
Q psy8823 312 GTSEKTVELFESII-PVCPPQTQP--SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQ 380 (386)
Q Consensus 312 g~~~~~~~l~v~~~-p~~~~~~~~--~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~ 380 (386)
|..-+++.|.|... |..+..+.. ..+..|+.+.+.|.+.+.| ++|.++++.+..++|+. .|.|.+++++
T Consensus 410 G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~ 489 (1051)
T KOG3513|consen 410 GTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRS 489 (1051)
T ss_pred ceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcc
Confidence 99999999999876 655554433 4677899999999999999 79999999888888876 6999999999
Q ss_pred cccCC
Q psy8823 381 DRLMH 385 (386)
Q Consensus 381 d~~~~ 385 (386)
||..|
T Consensus 490 DaG~Y 494 (1051)
T KOG3513|consen 490 DAGKY 494 (1051)
T ss_pred cCcEE
Confidence 99876
No 3
>KOG4221|consensus
Probab=100.00 E-value=3.5e-34 Score=261.80 Aligned_cols=336 Identities=17% Similarity=0.283 Sum_probs=260.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
+..+-.|.++|.+ +.+|.++.|.|..... ..+.|.|.+++..+... .+.+... -.|++|
T Consensus 38 ~~~~~~f~~ep~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~------------~d~~~~~-----LsNgSl 98 (1381)
T KOG4221|consen 38 ANTPLQFLLEPSD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEV------------YDDRRQL-----LSNGSL 98 (1381)
T ss_pred ccCcceEEecccc--cccccceEEeccccccCCCCeeEEEccCchhhhhh------------hhhHHhh-----ccCCce
Confidence 3445556666664 4899999999997644 36779999988765321 1111111 234478
Q ss_pred EEcccCC-----CCCeEEEEEeEEc-ccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 99 LVKDIQE-----TDAGYYRCQVIIG-INNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 99 ~i~~~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.|.++.. .|.|.|+|.+.-. .+.-.+..+.|.+...+.+... .....+..|+++.|.|.+.+.+.+.+.|.++
T Consensus 99 ~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn 177 (1381)
T KOG4221|consen 99 YISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKN 177 (1381)
T ss_pred eEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecc
Confidence 8888876 8899999999864 3455677778877766655543 4556788999999999999988889999999
Q ss_pred CeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce------EeeCCCcccccCCCcEEE
Q psy8823 173 NNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV------ITVPKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l 245 (386)
...+...... ...++.|.|.++...|.|.|+|.++++.....+....+.|...|. +...+....+.+|+++.|
T Consensus 178 ~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~l 257 (1381)
T KOG4221|consen 178 DQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVL 257 (1381)
T ss_pred cccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEE
Confidence 9877655532 235788999999999999999999998777667778888774442 344556677889999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.|.|.+|+..+.... .++.. ...+.|.|.+++.+|+|.|+|.|+|..-...++..|.|..+
T Consensus 258 eCvvs~~p~p~v~Wlrng~~i~~ds-~rivl--------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 258 ECVVSGVPKPSVKWLRNGEKISVDS-YRIVL--------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred EEEecCCCCCceEEeeCCeeeeecc-eEEEE--------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 9999999999999999999855444 33332 14778999999999999999999997666777788888888
Q ss_pred CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecccccCC
Q psy8823 326 PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~d~~~~ 385 (386)
|..+..+....+..+..+.|.|.+.|.| +.|+|||..+..++... .|.|--+.+-|++||
T Consensus 329 P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~y 396 (1381)
T KOG4221|consen 329 PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFY 396 (1381)
T ss_pred CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhh
Confidence 9988888888888899999999999999 58999999998876553 266666677777765
No 4
>KOG4194|consensus
Probab=100.00 E-value=1.7e-34 Score=246.75 Aligned_cols=295 Identities=23% Similarity=0.415 Sum_probs=234.2
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
.....|.|..+|....+..|++++|+|.+.++ .+..+.|.++++...... ...... .....|.....+...-.+.
T Consensus 499 ~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~--ved~a~-~~~q~r~~~~~e~~~~~~~ 575 (873)
T KOG4194|consen 499 DDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD--VEDFAT-FLSQNRNGTFGEREEYTAI 575 (873)
T ss_pred cCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccc--hhcchh-hhhhhccCccchhhhhhhe
Confidence 35567888888888889999999999999863 455699999887543211 111111 1111111111112223447
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
|.+.|+...|+|.|+|++.|..+...+..++++|...|.+... +..+++..|+.+.|.|.+.|.|.|++.|.|+|+...
T Consensus 576 L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 576 LHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred eeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence 9999999999999999999999999999999999999988765 567889999999999999999999999999988743
Q ss_pred CCCc--e---EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 178 PTGG--S---IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 178 ~~~~--~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
+... + ......+.|.|++.+|.|.|+|.+.|..|. .+...++.|...|.+..+.....+..|+++.|.|.+.|.
T Consensus 655 PAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~ 733 (873)
T KOG4194|consen 655 PAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA 733 (873)
T ss_pred chhhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCC
Confidence 3321 1 124678999999999999999999999998 678899999999999999999999999999999999999
Q ss_pred CC-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 253 PP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 253 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
|+ |.+.|+|+++++.+.....+. ..+..|.+.+...+|+|.|+|...|..|.-...+.+.+...+.-
T Consensus 734 ~a~pr~~W~k~d~pil~t~rh~f~---------d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 734 PADPRLEWFKEDKPILITERHTFP---------DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred CCCccccccCCCCceEEeecccCC---------CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 88 899999999996555443332 24677889999999999999999999999988888877655543
No 5
>KOG4222|consensus
Probab=100.00 E-value=1.6e-33 Score=255.96 Aligned_cols=343 Identities=23% Similarity=0.338 Sum_probs=268.0
Q ss_pred hhcccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 17 ~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+.....+|.|..-|.++++..|+.++|.|.+.+.|.++++|||+|..... ...+ +.|+.+- ++
T Consensus 24 ~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~----~e~~------shR~~lp------~g 87 (1281)
T KOG4222|consen 24 SLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFK----GEPG------SHRFLLP------DG 87 (1281)
T ss_pred ccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCC----CCCC------CcceecC------Cc
Confidence 344556788898889999999999999999999999999999999963211 0111 1111110 11
Q ss_pred EEEEccc-----CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEE
Q psy8823 97 TLLVKDI-----QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWR 170 (386)
Q Consensus 97 ~L~i~~~-----~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~ 170 (386)
+|.+..+ ...|.|.|+|++.|..+...+....|.+-..+.-....+..+.+..|+.+.|.|.- .+.|.+.+.|.
T Consensus 88 sLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~ 167 (1281)
T KOG4222|consen 88 SLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWV 167 (1281)
T ss_pred cEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceee
Confidence 2332221 12399999999998877776766666655434333333455678889999999977 68889999999
Q ss_pred EcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEE
Q psy8823 171 RENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247 (386)
Q Consensus 171 ~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 247 (386)
|+|+.+.... .....++.|.|.+++..|.|.|.|++.|..+...+....+.|+.+|.+...+....+..|..+.+.|
T Consensus 168 Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c 247 (1281)
T KOG4222|consen 168 KDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDC 247 (1281)
T ss_pred cCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccc
Confidence 9999876222 2235688999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 248 ~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.+.|.|.|++.|.+++.. +. ..++.+.. .+.+|.|.++.+.|.|.|.|.+.|..|..+++..+.|...|.
T Consensus 248 ~v~GdP~P~Vrwkk~~~~--~P-~~ry~i~~-------d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 248 RVGGDPQPTVRWKKDDPS--LP-RSRYSILD-------DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS 317 (1281)
T ss_pred ccCCCCCCceeeeccCCC--CC-ccceeeee-------ccccccccccCCCcccceeeeccccccccccccceEEecCcc
Confidence 999999999999997665 32 23333321 357799999999999999999999999999999999999998
Q ss_pred CCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeec------ccce-------eeeeeeeecccccCC
Q psy8823 328 CPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS------SLLY-------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~------~~~~-------~~~i~~v~~~d~~~~ 385 (386)
.-..+....+..+..++|.|.+.++| +-|.+.|..--.+ .+.+ .|.|.+|++.|...|
T Consensus 318 f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Y 391 (1281)
T KOG4222|consen 318 FGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYY 391 (1281)
T ss_pred cccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceE
Confidence 88888888888999999999999999 5799877653322 1111 699999999998654
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=100.00 E-value=2.8e-30 Score=220.13 Aligned_cols=259 Identities=17% Similarity=0.278 Sum_probs=172.7
Q ss_pred cceeeecCCcEEEEEEE-----eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSV-----QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
....+.+|+.+.|.|.+ .+.+.+.++|+|++..... .... + ....|.|.+++.+
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~----------------~~~~--~---~g~~l~i~~~~~~ 92 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR----------------IIPI--D---NGSNMLILNPTQS 92 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce----------------EEEc--c---CCceEEEcccCcc
Confidence 44457799999999996 5677788999998743210 0000 0 1115889999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC--CeeecCCCceEEEeCCccEEEEEEe-----eeeCCCeEEEEEcCeeeCCC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP--PVISDNSTRSLVVSEGQPVQLECFA-----GGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~ 179 (386)
|+|.|+|.+.|..+. ....+.|.|... +.+.. ......+.+|..+.|.|.. .+.+++.++|+++.. +. .
T Consensus 93 DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~-~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~ 168 (326)
T PHA02785 93 DSGIYICITKNETYC-DMMSLNLTIVSVSESNIDL-ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-N 168 (326)
T ss_pred cCeEEEEEEECCCcc-eEEEEEEEEEecCCCccce-eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-C
Confidence 999999999976533 345566666543 22221 1223346789999999962 456888999988642 22 2
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
.... ..++.|.|.+++.+|+|.|+|.+.|..+... ...+.+.|.. +|.+ ..+....+..|+.++|.|.+.|.
T Consensus 169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~ 247 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLR 247 (326)
T ss_pred cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECC
Confidence 2221 2346899999999999999999999776532 2334455542 3333 33455667789999999999998
Q ss_pred CCC---eeEEEeCCeeeeeec-C--ceeEEeeee---ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 253 PPP---AIVWIKEDTQQVLTN-N--QHYSISHFA---TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 253 p~~---~~~W~~~~~~~~~~~-~--~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
|.+ .+.|++||..+.... . .++...... .........|.|.+++.+|.|.|+|.|.|..|....
T Consensus 248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 874 799999998732111 1 111111100 111123578999999999999999999999865544
No 7
>KOG4221|consensus
Probab=99.97 E-value=2.3e-30 Score=237.08 Aligned_cols=275 Identities=27% Similarity=0.430 Sum_probs=221.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+.+...+.+..+..|+.+.|.|.+.+.+.+.+.|.++...+. .++++....+ +.|.|.+
T Consensus 139 ~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~--------------~~~r~i~lps-----G~L~I~~ 199 (1381)
T KOG4221|consen 139 GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP--------------LDSRVIVLPS-----GALEISG 199 (1381)
T ss_pred ccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc--------------CCCcEEEcCC-----CcEEecc
Confidence 45667777888889999999999999987777899999886442 2234433333 2899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe-----eecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV-----ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
++..|.|.|+|.+.+......+..+.|.|...|. .....+....+.+|+.+.|.|.+.+.|.|.|.|.+|+..+.
T Consensus 200 ~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~ 279 (1381)
T KOG4221|consen 200 LQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS 279 (1381)
T ss_pred cccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee
Confidence 9999999999999987777778888888874332 12344566778899999999999999999999999998886
Q ss_pred CCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 178 PTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 178 ~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
...... ...+.|.|.+++..|+|.|+|.|.|.... ......+.|..+|.+...+....+.++.++.|.|.+.|.|.|
T Consensus 280 ~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p 358 (1381)
T KOG4221|consen 280 VDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIP 358 (1381)
T ss_pred ecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcc
Confidence 554222 24678999999999999999999995554 456778889999999888888888899999999999999999
Q ss_pred eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.+.|++||.. +.....+.+. .+..|.|..+-..|.|.|.|.++|..|...+...+.+...|.
T Consensus 359 ~v~w~kNgd~--~ipsdy~ki~--------~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 359 TVRWYKNGDR--IIPSDYFKIV--------GGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred eEEEEecCcc--cCcccceEec--------CCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence 9999999988 4445555543 233388888899999999999999999999988886654443
No 8
>KOG4222|consensus
Probab=99.97 E-value=8.2e-31 Score=238.56 Aligned_cols=341 Identities=21% Similarity=0.348 Sum_probs=256.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+-....|.+.+.+..+..|+.++|.|.-. +.+.+.+.|.|++..+.. ....++... ..+.|.
T Consensus 128 avlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~------------~~~~~~~li-----sgG~Ll 190 (1281)
T KOG4222|consen 128 AVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH------------YDVPIIALI-----SGGNLL 190 (1281)
T ss_pred EEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc------------ccceeEEEe-----cCCcEE
Confidence 34445677778888899999999999865 567888999999987630 011112111 123799
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+++..|+|.|.|++.|..+...+....|.|.++|.+... +....+..|..+.+.|.+.|.|.+.+.|.+++..+...
T Consensus 191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ 269 (1281)
T KOG4222|consen 191 ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS 269 (1281)
T ss_pred EeccccCCCceeeeeecccccccccccceeeeccCCccccc-cccceeecccccccccccCCCCCCceeeeccCCCCCcc
Confidence 99999999999999999988888899999999999988754 45667889999999999999999999999977766544
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeE
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV 258 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 258 (386)
.-.. .+..+|.|.+++..|.|.|.|.++|..+. ......+.|+.+|.+...+....+..|..++|.|.+.|+|.|.+.
T Consensus 270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~-l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG-LEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred ceeeeeccccccccccCCCcccceeeeccccccc-cccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceE
Confidence 4333 34478999999999999999999999987 667889999999999988888889999999999999999999999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC---CCCC----C
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP---VCPP----Q 331 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p---~~~~----~ 331 (386)
|.+.+....+......... ........+.|+|.+++..|.|.|.|...+..|+...-..+.+...- .+++ .
T Consensus 349 W~keg~q~llf~~~p~~~~--~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g 426 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSN--GRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQG 426 (1281)
T ss_pred EeccCcceecccCCCCCcC--ccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeec
Confidence 9998877444321111100 01111235589999999999999999999888876544333333211 1122 2
Q ss_pred CCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-eeeeeeeecccc
Q psy8823 332 TQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-QCVLPLVDRQDR 382 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-~~~i~~v~~~d~ 382 (386)
........++...+.|.+.+.| ++|.+++-.+....... ++.+-..+..|.
T Consensus 427 ~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl 481 (1281)
T KOG4222|consen 427 PANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDL 481 (1281)
T ss_pred ccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeee
Confidence 2334455678899999999998 79999999877665432 444444444443
No 9
>KOG4194|consensus
Probab=99.95 E-value=2.3e-27 Score=203.40 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=197.0
Q ss_pred CCceEEEeCCccEEEEEEeee--eCCCeEEEEEcCeeeCCCCc-----------------eEEeeeEEEECCCCCCCCeE
Q psy8823 141 STRSLVVSEGQPVQLECFAGG--HPTPRISWRRENNAILPTGG-----------------SIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~-----------------~~~~~~~l~i~~~~~~d~g~ 201 (386)
++..+....|.+++|+|.+.+ ..+..+.|.+++........ .......|.+.+++..|+|.
T Consensus 509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~gr 588 (873)
T KOG4194|consen 509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGR 588 (873)
T ss_pred CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCce
Confidence 455566678999999999965 44668999998763321110 00113468999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeee-eecCceeEEeeee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQV-LTNNQHYSISHFA 280 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~ 280 (386)
|+|+++|..|...+..+.+.|...|.+...|.......|+.+.|.|.+.|.|.|.+.|.|+|.... .....+..+.
T Consensus 589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm--- 665 (873)
T KOG4194|consen 589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM--- 665 (873)
T ss_pred EEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec---
Confidence 999999999998889999999999999999999999999999999999999999999999987611 1111222211
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC----CCc
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP----TSW 356 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p----~~W 356 (386)
..+..+.|.++..+|.|.|+|.|.|..|..++.+.|.|-+.|.......+..+..|+.+.+.|.+.+.| ..|
T Consensus 666 ----pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 666 ----PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred ----CCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence 135668899999999999999999999999999999999998877778888999999999999998887 589
Q ss_pred ccccceeeecccce------eeeeeeeecccccCC
Q psy8823 357 EPQRKQLNCSSLLY------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 357 ~~~~~~l~~~~~~~------~~~i~~v~~~d~~~~ 385 (386)
.|+.+.+.-..|+. -+++..+..+|+++|
T Consensus 742 ~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~y 776 (873)
T KOG4194|consen 742 FKEDKPILITERHTFPDGDQLLVVKENLVEDAGIY 776 (873)
T ss_pred cCCCCceEEeecccCCCCCeEEEEEehhhhhcceE
Confidence 99999999988775 589999999999987
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=9.4e-25 Score=186.27 Aligned_cols=226 Identities=18% Similarity=0.190 Sum_probs=155.6
Q ss_pred EEeCCccEEEEEEe-----eeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 146 VVSEGQPVQLECFA-----GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
.+.+|+.+.|.|.+ .|.|.+.++|+|++..... ......+..|.|.++..+|+|.|+|.+.|..+. ....+.|
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L 114 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNL 114 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEE
Confidence 35579999999986 5788889999998753110 011112445889999999999999999998765 4455666
Q ss_pred EEEec--ceEeeCCCcccccCCCcEEEEEE-----EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 221 EVEFA--PVITVPKPRLGQALQYDMDLECH-----VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 221 ~v~~~--p~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.|... |.+........+.+|..+.|.|. ..+.|++.+.|+++.. + ...++.. ..++.|.|.
T Consensus 115 ~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~--------~~~~~L~i~ 182 (326)
T PHA02785 115 TIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQ--------RTPGIITIE 182 (326)
T ss_pred EEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEe--------cCCCeEEEe
Confidence 66443 22222222334568899999997 2467888999987542 2 1122211 124689999
Q ss_pred ecccCCCeEEEEEEEcCCCceee----EEEEEEEecCCCC--CCCCCceeecCcceeeeEEecCCC------CCcccccc
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEK----TVELFESIIPVCP--PQTQPSELLPLRNVNMAVIFAEQP------TSWEPQRK 361 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~----~~~l~v~~~p~~~--~~~~~~~~~~~~~~~~~c~~~~~p------~~W~~~~~ 361 (386)
+++.+|+|.|+|.|.|..|.... .+.|.|.....+| ..+....+..|+.++|.|.+.+.| +.|++||+
T Consensus 183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~ 262 (326)
T PHA02785 183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGM 262 (326)
T ss_pred ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCE
Confidence 99999999999999999887643 3345554322222 123445566799999999998766 57999998
Q ss_pred eeeecc-----c----------------ceeeeeeeeecccccCC
Q psy8823 362 QLNCSS-----L----------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 362 ~l~~~~-----~----------------~~~~~i~~v~~~d~~~~ 385 (386)
.+.... + ...|.|.+|+.+|++.|
T Consensus 263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y 307 (326)
T PHA02785 263 YYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF 307 (326)
T ss_pred ECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence 774321 1 12699999999999765
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=156.06 Aligned_cols=165 Identities=19% Similarity=0.342 Sum_probs=111.6
Q ss_pred ccceeeecCCcEEEEEEEeeC-----------CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-----------QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..+..+.+|++|.|.|.+.+. ..+.|.|+|++... .....+....... +.. .+....+.+|.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~----~v~~~~~~~~~~~--i~~-~~~~~r~~~L~ 101 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLA----FVRDSGARTKIKK--ITH-NEIGDRSENLW 101 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEE----EEEcCCCcccccc--ccc-cceecCCCeEE
Confidence 345668999999999997653 34579999975321 0000000000000 000 00011244899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-----eeCCCeEEEEEcCe
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-----GHPTPRISWRRENN 174 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-----~~~~~~v~W~~~~~ 174 (386)
|.+++.+|+|.|+|.+.|.. ......+.|.|..++ ....+.+|+.++|.|.+. +.|.+.++|+|++.
T Consensus 102 I~~v~~~DsG~Y~C~a~N~~-~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~ 173 (227)
T PHA02826 102 IGNVINIDEGIYICTISSGN-ICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN 173 (227)
T ss_pred ECCCChHHCEEEEEEEEECC-cceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence 99999999999999999854 334666777774322 234567899999999885 34578999999999
Q ss_pred eeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 175 AILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 175 ~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+........ .+..|.|.+++.+|+|.|+|.+....
T Consensus 174 ~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 174 IVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 8865544332 34589999999999999999998753
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=1.9e-20 Score=149.81 Aligned_cols=156 Identities=15% Similarity=0.269 Sum_probs=113.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC-----------CCeEEEEEcCeee--CCC-----------CceEEeeeEEEECCCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP-----------TPRISWRRENNAI--LPT-----------GGSIYRGSILKIPQITKED 198 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~~--~~~-----------~~~~~~~~~l~i~~~~~~d 198 (386)
..+.+.+|+++.|.|.+.+.+ .+.+.|+|++... ... .....++..|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999986643 3479999987542 100 0011235689999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-----ecCCCeeEEEeCCeeeeeecCce
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-----AYPPPAIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~~~W~~~~~~~~~~~~~~ 273 (386)
+|.|+|++.|..+. ....+.|.|..++ ....+.+|+.+.|.|.+. +.|.|+++|++++.. +....+
T Consensus 110 sG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~--l~~~~r 180 (227)
T PHA02826 110 EGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI--VLYTDR 180 (227)
T ss_pred CEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE--CCCCCC
Confidence 99999999997765 4556666664322 234567899999999985 345789999999988 444444
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.... ....|.|.+++.+|+|.|+|.|+...+..
T Consensus 181 ~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 181 IQLRN-------NNSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred EEEeC-------CCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 33221 34589999999999999999999875433
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.78 E-value=5.5e-18 Score=117.77 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=81.4
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+..|+.+.|.|.+.|.|++++.|++++.. +....++.+... ...+.|.|.++..+|+|.|+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~--l~~~~~~~~~~~-----~~~s~L~I~~~~~~D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQ--IQEGEGIKIENT-----ENSSKLTITEGQQEHCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEE--ecCCCcEEEEec-----CCeeEEEECCCChhhCEEEEE
Confidence 4455566777889999999999999999999999999988 555544443321 135789999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCC
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.|..|..++++.|.|.+.|.+|
T Consensus 74 ~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEcCCCceeEEEEEEEecCCCCC
Confidence 999999999999999999998765
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.5e-16 Score=108.41 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|+|.|.++|++++.. +....++.. .+..|.|.++..+|+|.|+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~--~~~~~~~~~---------~~~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP--MPATAEISM---------SGAVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC--CCCCCEEec---------CCCEEEECcCChhhCEEEE
Confidence 46666677778888999999999999999999999999876 433322211 2457999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 70 C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 70 CEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEcCCCceEEEEEEEE
Confidence 999999999999998876
No 15
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=5.9e-16 Score=105.42 Aligned_cols=87 Identities=20% Similarity=0.361 Sum_probs=69.6
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
|+.+.|.|.+.|.|++.+.|++++.. +.. ..++.+..... .....+.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~--i~~~~~r~~~~~~~~-~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRI--INPEMSRYLVSTKEV-GDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEE--CCCCCCcEEEEEecC-CCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 68899999999999999999999976 432 23443332211 223457899999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy8823 319 ELFESIIPVCP 329 (386)
Q Consensus 319 ~l~v~~~p~~~ 329 (386)
.|.|...|.+|
T Consensus 78 ~L~V~~~P~~P 88 (88)
T cd05735 78 QLTVQEPPDPP 88 (88)
T ss_pred EEEEeCCCCCC
Confidence 99999887654
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.67 E-value=1.1e-15 Score=106.28 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=69.2
Q ss_pred CcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....+.+|+++.|.|.+.| .|+|.+.|+|+|.. +...................+.|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~--i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRT--LTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCee--CCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 3456778999999999999 88889999999988 54333322211111112246889999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy8823 312 GTSEKTVELFES 323 (386)
Q Consensus 312 g~~~~~~~l~v~ 323 (386)
|..+.++.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999999998875
No 17
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=8.5e-16 Score=101.30 Aligned_cols=74 Identities=26% Similarity=0.541 Sum_probs=61.7
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
+|+.+.|.|.+.|+|.|.+.|++++.. +....+.... ..+.|.|.++..+|+|.|+|.|.|..|+.+.++
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~--~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQ--LSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEE--CCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 588999999999999999999999987 4333222221 356899999999999999999999999999998
Q ss_pred EEEE
Q psy8823 319 ELFE 322 (386)
Q Consensus 319 ~l~v 322 (386)
.|.|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 8864
No 18
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=1.1e-15 Score=99.77 Aligned_cols=73 Identities=33% Similarity=0.479 Sum_probs=62.1
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +....++.+. .++.|.|.+++.+|+|.|+|.|.|..|+...+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~--l~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTEL--LVNNSRISIW--------DDGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEe--cccCCCEEEc--------CCCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 67899999999999999999999876 4444444432 2467999999999999999999999999999998
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 71 l~~ 73 (73)
T cd05852 71 LSV 73 (73)
T ss_pred EEC
Confidence 864
No 19
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=2.8e-15 Score=104.52 Aligned_cols=96 Identities=20% Similarity=0.398 Sum_probs=68.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+.......|+.++|.|.+.|.|.|.++|++++.. +...................+.|.|.++..+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~--~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRN--ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcc--ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 45555555555555689999999999999999999998765 3221110000000011123468999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|....++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999988865
No 20
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.63 E-value=4e-15 Score=102.69 Aligned_cols=89 Identities=19% Similarity=0.364 Sum_probs=73.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++++.. +....++.+.. ....+.|.|.++..+|+|.|+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~ 75 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQI--IVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYT 75 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEE--CCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEE
Confidence 56666677788899999999999999999999999999877 44444443321 113578999999999999999
Q ss_pred EEEEcCCCceeeEEEE
Q psy8823 305 CRAANKLGTSEKTVEL 320 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l 320 (386)
|.|.|..|..+.++.|
T Consensus 76 C~a~N~~G~~~~~~~l 91 (92)
T cd05747 76 VVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEcCCCCEeEEEEe
Confidence 9999999999888876
No 21
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.63 E-value=3.6e-15 Score=105.86 Aligned_cols=101 Identities=22% Similarity=0.398 Sum_probs=73.7
Q ss_pred EecceEeeCCCc--c--cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecc-
Q psy8823 223 EFAPVITVPKPR--L--GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIE- 296 (386)
Q Consensus 223 ~~~p~~~~~~~~--~--~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~- 296 (386)
.++|.+...+.. . ....|..++|.|.+.|.|.+.+.|++++.. +.. ..++....... .....+.|.|.++.
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~--l~~~~~r~~~~~~~~-~~~~~s~L~I~~v~~ 78 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVP--LDLGNPRYEETTEHT-GTVHTSILTIINVSA 78 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEE--CCCCCCeEEEEeecc-CccceeEEEECcCCc
Confidence 456666554431 1 123568999999999999999999999987 432 22333322221 22235789999997
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+|.|.|+|.|.|..|....++.|.+...|
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 599999999999999999999999997666
No 22
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.63 E-value=5e-15 Score=100.24 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=66.4
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.. +... .++.+... ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~--i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKA--FTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEE--CccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 34567899999999999999999999999987 4322 23333211 1357899999999999999999999999
Q ss_pred ceeeEEEEEE
Q psy8823 313 TSEKTVELFE 322 (386)
Q Consensus 313 ~~~~~~~l~v 322 (386)
..+.++.|.|
T Consensus 77 ~~~~~~~l~V 86 (86)
T cd05894 77 EDHASLFVKV 86 (86)
T ss_pred cEEEEEEEEC
Confidence 9999988864
No 23
>KOG3515|consensus
Probab=99.62 E-value=6.1e-15 Score=133.45 Aligned_cols=303 Identities=20% Similarity=0.286 Sum_probs=190.0
Q ss_pred eeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.-+..|++|.|+|.+.++| ...+.|++.+.... .++.... +..|.......+.-+.|.
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~ 75 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----------------GRYATIA-----DPTLVTTGDVRDTVAELN 75 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc----------------ccccccc-----CCceeeecchhhhhhhhh
Confidence 3688999999999998654 56799999876541 2222211 126777777788888999
Q ss_pred EEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe--eeeCCCeEEEEEcCeeeCCCCc---------
Q psy8823 113 CQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA--GGHPTPRISWRRENNAILPTGG--------- 181 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~--~~~~~~~v~W~~~~~~~~~~~~--------- 181 (386)
|++.+..+........+.+..+|....... ......+..+.+.|.+ .+.|.++++|..++........
T Consensus 76 c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~-e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a 154 (741)
T KOG3515|consen 76 CRAFNSVGMPSRCPMILDVDYPPACLPELG-EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA 154 (741)
T ss_pred hhhcccccCceecceeeccccCcccccccc-chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc
Confidence 999887666666777888888875543322 2234567889999965 4667789999998765433221
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC--ceeeeEEEEEEecce---EeeCCCcccccCCCcEEEEEEEE-ec
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGVGK--GTRRNIAVEVEFAPV---ITVPKPRLGQALQYDMDLECHVE-AY 252 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~-g~ 252 (386)
.......+.+...+.++.|.|+|.+.+.... ...+...+.+..+.. +..........+|+.+.|.|.+. |+
T Consensus 155 ~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~ 234 (741)
T KOG3515|consen 155 LGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGN 234 (741)
T ss_pred cCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCC
Confidence 1123456888888899999999999885332 233444555443332 22223335567899999999865 57
Q ss_pred CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCC
Q psy8823 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332 (386)
Q Consensus 253 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~ 332 (386)
|.+.++|+++...... ..... ... ........+.+..-..++.-...|.+.|. ..++..+.+...|...+..
T Consensus 235 P~~~~~w~~~s~~~~~--~sl~~--~~~-sg~~v~~~~~~~~~r~~~~~~~kc~a~n~---~~~~~~tav~~~~~~~~Is 306 (741)
T KOG3515|consen 235 PSQQQTWYKDSRPQSE--SSLLS--QEP-SGDTVSSTLVLRVGRQDLQAQLKCKASNL---LAASQITAVQVKPTAVPIS 306 (741)
T ss_pred cchhhhhccccccchh--hhccc--CCC-CCCcccccccccccccchhhhhhccccCc---cccceeeeccccccccccc
Confidence 8889999999877322 21110 000 11112334444444445555688999992 2233333344444433322
Q ss_pred -CCceeecCcceeeeEEec-CCC---CCcccccceeeec
Q psy8823 333 -QPSELLPLRNVNMAVIFA-EQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 333 -~~~~~~~~~~~~~~c~~~-~~p---~~W~~~~~~l~~~ 366 (386)
.......++...+.|... +.| +.|+++.....-+
T Consensus 307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGS 345 (741)
T ss_pred CcccccccccccccceeccCCCCccceeeeccCcccccc
Confidence 223377888899999773 333 7899866654433
No 24
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.62 E-value=9.9e-15 Score=100.81 Aligned_cols=90 Identities=28% Similarity=0.537 Sum_probs=76.8
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++...... ....|.|.++..+|+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~--l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRP--LTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEE--EESSSSEEEEEET-----TEEEEEESSESGGGSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccc--eeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEE
Confidence 4566667778889999999999999999999999999988 6666555544322 57889999999999999999
Q ss_pred EEEcCCCceeeEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v 322 (386)
.|.|..|..+.++.|.|
T Consensus 74 ~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 74 VASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEC
Confidence 99999999999998875
No 25
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.62 E-value=9.2e-15 Score=100.11 Aligned_cols=86 Identities=22% Similarity=0.394 Sum_probs=69.6
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....... .....|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~--~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS--MPSSAEIS---------MSGAVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc--CCCccEEE---------EeCCEEEECCCCcccCEEEEE
Confidence 3344456667788999999999999999999999998876 32222211 146789999999999999999
Q ss_pred EEEcCCCceeeEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v 322 (386)
.|.|..|....+..|.|
T Consensus 71 ~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 71 EAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCcEEEEEEEEE
Confidence 99999999999988876
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.62 E-value=8.4e-15 Score=101.05 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+....+.+|+++.|.|.+.|.|.|.+.|++++.. +....++.+.... .....|.|.++..+|+|.|+|.|.|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~--l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQA--LALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEE--CccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECC
Confidence 4456678899999999999999999999999987 4444443332110 124579999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|.....+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99999888764
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.61 E-value=7.2e-15 Score=96.17 Aligned_cols=74 Identities=24% Similarity=0.452 Sum_probs=58.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.+.|++++.. +.. ..++.+.... ....+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~--i~~~~~r~~~~~~~----~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEM--VQYNTDRISLYQDN----SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEE--CcCCCCeEEEEEcC----CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 47999999999999999999987 432 2344332111 1234799999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 75 V 75 (75)
T cd05892 75 V 75 (75)
T ss_pred C
Confidence 5
No 28
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=1e-14 Score=101.40 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=73.7
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+. .+.++..... ...+.|.|.++.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~--------------~~~~~~~~~~--~~~s~L~I~~~~ 64 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ--------------EGEGIKIENT--ENSSKLTITEGQ 64 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec--------------CCCcEEEEec--CCeeEEEECCCC
Confidence 456777888889999999999999999999999999886542 1122222221 234589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+|+|.|+|.+.|..+.. .+.+.|.|..+|.
T Consensus 65 ~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~ 95 (98)
T cd05762 65 QEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD 95 (98)
T ss_pred hhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence 999999999999876554 6688898887764
No 29
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=5.3e-15 Score=93.92 Aligned_cols=66 Identities=23% Similarity=0.447 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|+|+|.+.|+|+|.. +... .....|.|.++..+|+|.|+|.|+|..|..++++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~--l~~~-------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKL--ISGK-------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEE--Cccc-------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 47899999999999999999987 4311 13568999999999999999999999998888777766
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 66 ~ 66 (67)
T cd05863 66 I 66 (67)
T ss_pred E
Confidence 3
No 30
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=8.2e-15 Score=95.58 Aligned_cols=71 Identities=25% Similarity=0.575 Sum_probs=58.3
Q ss_pred cEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 242 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
++.|.|.+.|.|.|.++|++++.. +....++... ....|.|.++..+|+|.|+|.|.|..|+.++++.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~--~~~~~~~~~~--------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDM--VIPSDYFKIV--------KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeE--CCCCCCEEEE--------ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 478999999999999999999987 4443333322 234588889999999999999999999999999886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 4
No 31
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=7.4e-15 Score=99.58 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=68.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+....+..|+++.|.|.+.|.|.|.+.|++++.. +....++.. ....|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQP--LASENRIEV---------EAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEE--CCCCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECC
Confidence 45567788999999999999999999999999987 444444332 2457999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.|...+++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999999888764
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.61 E-value=1.4e-14 Score=99.46 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +......... .......|.|.++..+|.|.|+|.|.|..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~--~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLI--VIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEE--ccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 3445578999999999999999999999999987 4332221111 11235689999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.|
T Consensus 80 G~~~~~~~L~v 90 (90)
T cd04972 80 GQANVSVQVTV 90 (90)
T ss_pred CceeEEEEEeC
Confidence 99999988764
No 33
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.60 E-value=1.3e-14 Score=101.07 Aligned_cols=82 Identities=22% Similarity=0.509 Sum_probs=66.7
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+..|+.+.|.|.+.|.|.|.+.|++++.. +... .++... ...+.|.|.+++.+|.|.|+|.|.|..|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~--~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEP--IESGEEKYSFN-------EDGSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEE--CcCCCCEEEEe-------CCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence 34577899999999999999999999999987 4332 222211 1245799999999999999999999999
Q ss_pred ceeeEEEEEEEe
Q psy8823 313 TSEKTVELFESI 324 (386)
Q Consensus 313 ~~~~~~~l~v~~ 324 (386)
..+.++.|.|..
T Consensus 83 ~~~~~~~L~V~~ 94 (95)
T cd05730 83 EQEAEIHLKVFA 94 (95)
T ss_pred eEEEEEEEEEEe
Confidence 999999998864
No 34
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.60 E-value=2.9e-14 Score=106.72 Aligned_cols=124 Identities=19% Similarity=0.331 Sum_probs=89.7
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCee
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQ 265 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~ 265 (386)
+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.|. |. +.+.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5899999999999999999987666 567889999999988776665555578899999999986 44 38999999854
Q ss_pred eee----ecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 266 QVL----TNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 266 ~~~----~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
... ..... .......+..+...+.|.+.....++.+.|+|.+.|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 111 01111 011122233334567788877777778899999988754
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.60 E-value=1.1e-14 Score=101.50 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=67.9
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+..|+.+.|.|.+.|+|+|.+.|+|++.+ +............+ ......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~--l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRT--LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEE--CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 34566789999999999999999999999988 54433221111100 1112357899999999999999999999999
Q ss_pred ceeeEEEEEEE
Q psy8823 313 TSEKTVELFES 323 (386)
Q Consensus 313 ~~~~~~~l~v~ 323 (386)
..+.++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99999998874
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=1.1e-14 Score=101.79 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=68.5
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+. ......+.+|+.+.|.|.+.|.|.|.+.|++++.. +...................+.|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRN--FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcc--cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence 34443 33456778899999999999999999999998855 3221110000011111223578999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999999888764
No 37
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.8e-14 Score=98.15 Aligned_cols=80 Identities=41% Similarity=0.622 Sum_probs=65.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.|.|.|.++|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~ 86 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVY 86 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEE
Confidence 34567889999999999999999999999998876554433345668999999999999999999999997 55556665
Q ss_pred E
Q psy8823 222 V 222 (386)
Q Consensus 222 v 222 (386)
|
T Consensus 87 V 87 (88)
T cd05851 87 V 87 (88)
T ss_pred E
Confidence 5
No 38
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=1.3e-14 Score=95.84 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=60.2
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+++.|.|.+.|.|.|+++|++++..+.......... .....|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~--------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK--------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE--------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 6789999999999999999999998732221111111 12457899999999999999999999999999999
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 876
No 39
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.60 E-value=1.5e-14 Score=94.85 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.|.|.+.|+|.|+++|++++.. +...................+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~--l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAI--LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEE--CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999998 544433221111111112357899999999999999999999999998888763
No 40
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=1.6e-14 Score=95.74 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=60.3
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
|+++.|.|.+.|.|.|.++|++++..+...... ++. ...+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~---------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH---------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE---------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 678999999999999999999999873221111 111 1356799999999999999999999999999998
Q ss_pred EEEE
Q psy8823 319 ELFE 322 (386)
Q Consensus 319 ~l~v 322 (386)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 8876
No 41
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.59 E-value=1.9e-14 Score=95.01 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=60.9
Q ss_pred cEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 242 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKP--LKLSGRVQIETT-----ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEE--cCCCCeEEEEEC-----CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 368999999999999999999988 544444443221 1367899999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 4
No 42
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=1.1e-14 Score=95.75 Aligned_cols=73 Identities=32% Similarity=0.515 Sum_probs=61.6
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +....++... ....|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~--~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTEL--LTNSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEE--cccCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 67899999999999999999999987 4444444321 2457999999999999999999999999999988
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 865
No 43
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=1.3e-14 Score=101.37 Aligned_cols=91 Identities=19% Similarity=0.388 Sum_probs=67.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-----CceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-----NQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
|.+.. +....+.+|+.++|.|.+.|.|.|.+.|+++.....+.. ..++... .......|.|.+++.+|+
T Consensus 3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-----~~~~~~~L~I~~v~~~D~ 76 (98)
T cd05870 3 PHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-----GQHGESSLHIKDVKLSDS 76 (98)
T ss_pred CEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe-----ecCCeeEEEEeeCCcCCC
Confidence 44433 456778899999999999999999999999532211221 1222221 111346899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEE
Q psy8823 301 GSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|+|.|.|..|....++.|.|
T Consensus 77 G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 77 GRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEEeccCCcceeEEEEeC
Confidence 9999999999999999888764
No 44
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.58 E-value=3.6e-14 Score=97.82 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=65.2
Q ss_pred CCCcccccCCCcEEEEEEEEecCC-CeeEEEe-CCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP-PAIVWIK-EDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
.+....+..|+++.|.|.+.|.|. |.+.|++ ++.. +.. ..++.... . ....++|.|.+++.+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~--l~~~~~r~~v~~--~--~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEK--LTPNQQRISVVR--N--DDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcC--ccccCCeEEEEe--C--CCCceEEEEeccChhhCEEEEEEE
Confidence 344556788999999999999995 6999998 5654 322 22332211 1 112578999999999999999999
Q ss_pred EcCC-CceeeEEEEEE
Q psy8823 308 ANKL-GTSEKTVELFE 322 (386)
Q Consensus 308 ~n~~-g~~~~~~~l~v 322 (386)
.|.. |..++++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9996 89999998876
No 45
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.58 E-value=2.6e-14 Score=93.70 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=58.2
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.+.|++++.. +.. ..++..... ......|.|.++..+|+|.|+|.|.|..|+.+.++.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~--l~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENES--LTHNTDRVSMHQD----NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEE--CCCCCCeEEEEEc----CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 57999999999999999999987 432 233333211 11234799999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 75 V 75 (75)
T cd05893 75 V 75 (75)
T ss_pred C
Confidence 4
No 46
>KOG3515|consensus
Probab=99.56 E-value=3.1e-14 Score=128.97 Aligned_cols=220 Identities=15% Similarity=0.222 Sum_probs=159.5
Q ss_pred EEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPT-PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
.+..|+.|.|.|.+.+.|+ ..+.|++.++... ..........|......++..+.|.|.+.|..+........+.+.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 6889999999999977654 5799999988776 3333345677888888888889999999999888778888999999
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEE--ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCc-eeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVE--AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE-FTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~--g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G 301 (386)
+|.............+..+.+.|.+. +.|.+.++|..++..................... ...+.+.+...+.++.|
T Consensus 97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g 176 (741)
T KOG3515|consen 97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG 176 (741)
T ss_pred CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence 98877666667777888999999654 5666699999998874433322222221111111 34567888888999999
Q ss_pred EEEEEEEcC---CCceeeEEEEEEEecCCCCC---CCCCceeecCcceeeeEEe-cCCC---CCcccccceeeec
Q psy8823 302 SYICRAANK---LGTSEKTVELFESIIPVCPP---QTQPSELLPLRNVNMAVIF-AEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 302 ~Y~C~a~n~---~g~~~~~~~l~v~~~p~~~~---~~~~~~~~~~~~~~~~c~~-~~~p---~~W~~~~~~l~~~ 366 (386)
.|+|.|.|. .+.......+.+.......- ........++..++|.|.+ .++| ++|+++..+...+
T Consensus 177 ~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~ 251 (741)
T KOG3515|consen 177 NYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES 251 (741)
T ss_pred eeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh
Confidence 999999994 45555555555543322211 1122556788899999976 5555 7999999988876
No 47
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=2.7e-14 Score=91.95 Aligned_cols=69 Identities=16% Similarity=0.397 Sum_probs=56.0
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|+|.|.+.|++++.. +...... .....|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~--l~~~~~~----------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQL--IVLNHTF----------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEE--CCCCCEE----------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999988 4433221 12457999999999999999999999998887766655
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 69 ~ 69 (70)
T cd05864 69 V 69 (70)
T ss_pred E
Confidence 3
No 48
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=1.9e-14 Score=93.36 Aligned_cols=68 Identities=25% Similarity=0.553 Sum_probs=56.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
+.|.|.+.|.|.|.+.|++++.. +....++.+. ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~--~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQ--VTESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEE--CCCCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999877 4444444332 24679999999999999999999999999988876
No 49
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.56 E-value=3.5e-14 Score=92.39 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=57.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +....++. .....|.|.++..+|+|.|+|.|.|..|..+.++.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~--l~~~~~~~---------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKL--ISEKNRTK---------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEE--CCCCCEEE---------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 46899999999999999999987 54443322 13567999999999999999999999999888877766
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 70 ~ 70 (71)
T cd04976 70 V 70 (71)
T ss_pred E
Confidence 3
No 50
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.56 E-value=7.3e-14 Score=94.33 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+.++|.|.+.|.|.| .+.|++++..+.... ..++.... .....+.|.|.+++..|+|.|+|.|.|..|..+++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME----VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE----ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 468999999999987 689999998732211 11221110 01135689999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998654
No 51
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.55 E-value=9.8e-14 Score=95.66 Aligned_cols=91 Identities=16% Similarity=0.318 Sum_probs=66.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.+.|....+.+|++++|.|.+.+.|. +.++|++ ++..+.. .+.++..... ....++|.|.+++
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------------~~~r~~v~~~-~~~~~~L~I~~v~ 68 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------------NQQRISVVRN-DDYSSTLTIYNAN 68 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------------cCCeEEEEeC-CCCceEEEEeccC
Confidence 556677778999999999999999885 6999998 4533211 1112222211 1223589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.|.|..++..++.+.|.|
T Consensus 69 ~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 69 IDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred hhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 999999999999987677777777766
No 52
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.55 E-value=3.7e-14 Score=92.50 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=57.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++.. +..... .. ......|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~--~~~~~~-~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP--LSPNRT-KK-------LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC--CCCCce-eE-------EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999876 322211 11 113568999999999999999999999999999988876
No 53
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.55 E-value=2.4e-13 Score=101.73 Aligned_cols=113 Identities=25% Similarity=0.388 Sum_probs=82.5
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENN 174 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~ 174 (386)
+|.|.+++.+|+|.|+|.+.+.. ......+.|.|..+|.+..... .....+|+.+.|.|.+.|. |. +.+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~~l~v~~~P~v~~~~~-~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPP-HQAQQIIQLSVSEPPRVRLSLE-KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccC-cceeeEEEEEEecCCceEEeCC-CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 79999999999999999998653 3457888999998887765433 3334478899999999886 43 4899999875
Q ss_pred eeCC----------------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 175 AILP----------------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 175 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.... .++.....+.|.+.....++.+.|+|.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 4211 111222345677777766677799999988654
No 54
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.55 E-value=7.3e-14 Score=93.02 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=57.8
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee--cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT--ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.|.|.+.|+|.|+++|+++|.. +............. ......+.|.|.++..+|+|.|+|.|.|..|..++++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~--i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAV--LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEE--CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999999988 44433322211111 1223466899999999999999999999999999988764
No 55
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.55 E-value=7e-14 Score=96.13 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=68.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... . .....|.|.+++.+|+|.|+|.|.|.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~--~~~~~~~~~~~~-~---~~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD--IELSEHYSVKLE-Q---GKYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEE--CCCCCCEEEEEc-C---CCEEEEEECCCChhhCEEEEEEEEeC
Confidence 34566788999999999999999999999999887 433333332211 1 12357999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.|..+.++.|.|
T Consensus 81 ~G~~~~~~~v~~ 92 (92)
T cd05891 81 YGGETVDVTVSV 92 (92)
T ss_pred CCceeeEEEEEC
Confidence 999999998864
No 56
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=5.6e-14 Score=93.48 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=60.8
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +........ .......|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~--~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVP--IEELPPDPR------RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEE--CCCCCCcce------EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 67899999999999999999999987 332221100 0123578999999999999999999999999999998
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 876
No 57
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.54 E-value=7.1e-14 Score=93.10 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+++.|.|.+.|.|.|.+.|++++.. +....++.... ......|.|.++..+|.|.|+|.|.|..|.......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~--~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGH--VPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeE--CCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 67899999999999999999999876 44433433221 113578999999999999999999999999877666
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
+.+
T Consensus 74 ~~~ 76 (78)
T cd05743 74 GIL 76 (78)
T ss_pred EEE
Confidence 554
No 58
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.54 E-value=8.3e-14 Score=91.70 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=57.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++..+.. ...++.+... ......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQD----NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEc----CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999987321 2233332111 112346999999999999999999999999999988764
No 59
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.54 E-value=1.3e-13 Score=95.83 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=66.1
Q ss_pred ceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCceE-E--------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGGSI-Y--------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+.+|++++|.|.+.| .|+|.+.|+|+|..+....... . ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 8899999999999886433322 1 1467999999999999999999999997
Q ss_pred ceeeeEEEEEE
Q psy8823 213 GTRRNIAVEVE 223 (386)
Q Consensus 213 ~~~~~~~l~v~ 223 (386)
.+..+.|.|+
T Consensus 91 -~~~t~~L~V~ 100 (101)
T cd04975 91 -KSLTFELYVN 100 (101)
T ss_pred -EEEEEEEEEE
Confidence 6677777764
No 60
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=1.6e-13 Score=93.92 Aligned_cols=80 Identities=40% Similarity=0.677 Sum_probs=66.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.|.|.+.++|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 86 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIY 86 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEE
Confidence 45567889999999999999999999999988776554444445678999999999999999999999987 45555655
Q ss_pred E
Q psy8823 222 V 222 (386)
Q Consensus 222 v 222 (386)
|
T Consensus 87 V 87 (88)
T cd04968 87 V 87 (88)
T ss_pred E
Confidence 4
No 61
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=1.7e-13 Score=94.61 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=70.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. .+.++...... ..++|.|.+++
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~--------------~~~~~~~~~~~--~~~~L~I~~v~ 64 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLT--------------SSQRYQIESDG--GSSSLTIKNVT 64 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEE--------------SSSSEEEEEET--TEEEEEESSES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccccccee--------------eeeeeeeeccc--ceeEEccCCCC
Confidence 567888888999999999999999999999999999875542 23344433322 66799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.+.+. .+..+..+.|.|
T Consensus 65 ~~D~G~Y~C~~~n~-~g~~~~~~~l~V 90 (90)
T PF07679_consen 65 REDAGTYTCVASNS-SGEATASVNLTV 90 (90)
T ss_dssp GGGSEEEEEEEEET-TEEEEEEEEEEE
T ss_pred hhhCEEEEEEEEEC-CCEEEEEEEEEC
Confidence 99999999999987 444466666654
No 62
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.54 E-value=7.7e-14 Score=89.97 Aligned_cols=68 Identities=24% Similarity=0.467 Sum_probs=54.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +.....+. .....|.|.++. |+|.|+|.|.|..|..+.++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~--l~~~~~~~---------~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE--LTKEDEMP---------VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE--CCCcccee---------cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 67899999999999999999999987 43332221 124468888874 789999999999999988877
Q ss_pred E
Q psy8823 320 L 320 (386)
Q Consensus 320 l 320 (386)
|
T Consensus 68 l 68 (69)
T cd05739 68 V 68 (69)
T ss_pred E
Confidence 6
No 63
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.54 E-value=1.6e-13 Score=93.64 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=63.3
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+.+|+.+.|.|.+.|.|. .+.|+++ +.. +....++.... ......|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~--~~~~~r~~~~~-----~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK--IVSSQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeE--ecCCCCEEEEe-----CCCeeEEEEecCChHHCEEEEEEEEc
Confidence 445567889999999999999998 8999985 444 33334443321 11245899999999999999999999
Q ss_pred CCCce-eeEEEEEE
Q psy8823 310 KLGTS-EKTVELFE 322 (386)
Q Consensus 310 ~~g~~-~~~~~l~v 322 (386)
..|.. ++++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99986 56666654
No 64
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.54 E-value=6.6e-14 Score=93.25 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=62.7
Q ss_pred CcEEEEEEEEe--cCCCeeEEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEA--YPPPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g--~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+++.|.|.+.+ .+++.+.|++|+..+... ...++.... .....+.|.|.+++..|+|+|+|.|.|..++..++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~----~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG----GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec----cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 46899999976 446799999999984332 222332210 00135689999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999998765
No 65
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.54 E-value=1.3e-13 Score=96.34 Aligned_cols=94 Identities=22% Similarity=0.384 Sum_probs=69.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~ 302 (386)
+|.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+......++.+...... ....+.|.|.++.. +|.|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence 34443 3445667899999999999999999 699999998733322345544432211 22356899999998 55899
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|+|.|.|..|.++..+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
No 66
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.53 E-value=9.7e-14 Score=94.51 Aligned_cols=81 Identities=15% Similarity=0.338 Sum_probs=63.7
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.+..|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|+|.|.|..|+.+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~--l~~~~~~~~~~~----~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKE--FKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEE--CCCCCceeeeEE----eCCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 467899999999999999999999999987 433322211000 01345799999999999999999999999999
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 9988864
No 67
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=1.6e-13 Score=93.21 Aligned_cols=82 Identities=16% Similarity=0.336 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+++.|.|.+.|.|.| .+.|++++..+..... ..+.... .....+.|.|.+++..|+|.|+|.|.|..|..+++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG----GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe----cccccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 468999999999987 6799999987332211 1111110 01135789999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 ~~l~V~~pP 85 (85)
T cd04970 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998755
No 68
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.53 E-value=1.6e-13 Score=93.52 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=66.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.+.+..+.+|+++.|.|.+.|.|. .+.|++++.... ..+.++.... .....+|.|.+++.+
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~-------------~~~~r~~~~~--~g~~~~L~I~~v~~~ 66 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKI-------------VSSQRVVVQK--EGVRSRLTIYNANIE 66 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEe-------------cCCCCEEEEe--CCCeeEEEEecCChH
Confidence 456677888999999999999999887 899998543210 1122333322 123458999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.|+|.+.|..+....+.+.|.+
T Consensus 67 D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 67 DAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred HCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 9999999999987776677777765
No 69
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.52 E-value=2.9e-13 Score=93.34 Aligned_cols=79 Identities=25% Similarity=0.477 Sum_probs=64.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ...
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ceE
Confidence 4567789999999999999999999999999988765543222 1347999999999999999999999987 445
Q ss_pred eEEEE
Q psy8823 217 NIAVE 221 (386)
Q Consensus 217 ~~~l~ 221 (386)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05737 87 DVTVS 91 (92)
T ss_pred EEEEe
Confidence 55544
No 70
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=1.5e-13 Score=94.41 Aligned_cols=80 Identities=24% Similarity=0.488 Sum_probs=63.5
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
|+.+.|.|.+.|.|.|.+.|++++....+. ...++... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 678999999999999999999988653221 11222211 2457999999999999999999999999
Q ss_pred eeeEEEEEEEecCC
Q psy8823 314 SEKTVELFESIIPV 327 (386)
Q Consensus 314 ~~~~~~l~v~~~p~ 327 (386)
...++.|.|.....
T Consensus 73 ~~~~~~l~V~~~~~ 86 (90)
T cd05726 73 ILTKAYLEVTDVIA 86 (90)
T ss_pred eEEEEEEEEeeccc
Confidence 99999999987543
No 71
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.52 E-value=1.5e-13 Score=97.06 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=64.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE--eecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV--ITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~~~~~~d~G~ 302 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+................. ....+.+ ..+..+|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG--SLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCC--cEEEEEeeccCCCcCcCEE
Confidence 46666677778888999999999999999999999999987322110000000000000 1112222 2346899999
Q ss_pred EEEEEEcCCCc-eeeEEEEEE
Q psy8823 303 YICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 303 Y~C~a~n~~g~-~~~~~~l~v 322 (386)
|+|.|.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 566777765
No 72
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.52 E-value=4.4e-13 Score=90.71 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=63.6
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.+.+.+|+.+.|.|.+.|.|.|.++|++++..+..... ... ....|.|.++..+|+|.|+|.+.|..|. .+..+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEE
Confidence 56788999999999999999999999999998865432 222 2468999999999999999999999997 55555
Q ss_pred EEE
Q psy8823 219 AVE 221 (386)
Q Consensus 219 ~l~ 221 (386)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 554
No 73
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.6e-13 Score=89.47 Aligned_cols=71 Identities=31% Similarity=0.549 Sum_probs=58.3
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.|.++|+|++..+........ .+++|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEEE
Confidence 67899999999999999999999987765544333 4578999999999999999999999987 44444443
No 74
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=1.4e-13 Score=90.69 Aligned_cols=72 Identities=31% Similarity=0.558 Sum_probs=59.5
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+|+.+.|.|.+.|.|.|.++|+|++..+...... ......|.|.+++.+|+|.|+|.+.|..|. .+..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEe
Confidence 5899999999999999999999999887654332 234568999999999999999999999987 44555554
No 75
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.51 E-value=2.5e-13 Score=92.04 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=66.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 84 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELA 84 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEE
Confidence 44567889999999999999999999999999988665555556778999999999999999999999987 44555544
No 76
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.51 E-value=3e-13 Score=93.36 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=53.3
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 316 (386)
+|+.+.|.|.+.|.|.|.++|++++..+......++.. .++.|.|.++. .+|+|.|+|.|.|..|....
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~---------~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL---------IDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe---------eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 47899999999999999999999998732212222211 24578888874 69999999999999998753
No 77
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.1e-13 Score=89.89 Aligned_cols=69 Identities=29% Similarity=0.602 Sum_probs=56.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +.. .++... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~--~~~-~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE--LPK-GRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc--CCC-CcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999766 322 222221 3457999999999999999999999999999888764
No 78
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.50 E-value=3.4e-13 Score=92.19 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=66.5
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
.+..+.+.+|++++|.|.+.|. .+.+.|++++..+....... ..+..|.|.+++++|+|.|+|.+.|..|...+..+.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 3445678899999999999999 99999999998865433211 134689999999999999999999999987777777
Q ss_pred EEE
Q psy8823 220 VEV 222 (386)
Q Consensus 220 l~v 222 (386)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 776
No 79
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=4.7e-13 Score=92.43 Aligned_cols=72 Identities=25% Similarity=0.479 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee-E
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK-T 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~ 317 (386)
|+.++|.|.+.|+|.|+++|++++..+......++.+ ..+.|.|.++. .+|.|.|+|.|+|..|.... .
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~---------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 89 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL---------VAGNLVINNPQKARDAGSYQCLAINRCGTVVSRE 89 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE---------ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEE
Confidence 5689999999999999999999998833222223322 24578888765 69999999999999997754 4
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 90 a~l 92 (94)
T cd05850 90 ANL 92 (94)
T ss_pred EEE
Confidence 443
No 80
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.50 E-value=1.8e-13 Score=90.07 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=55.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 321 (386)
++|.|.+.|.|.|.+.|++++..+......++... ..+.|.|.+++.+|+|.|+|.|.|..|.. +.++.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 47999999999999999999887322233333221 24569999999999999999999999985 5677776
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 6
No 81
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=2.7e-13 Score=89.54 Aligned_cols=74 Identities=28% Similarity=0.550 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++... +....+... ...+.|.|.++..+|.|.|+|.|.|..|..+.++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~-~~~~~~~~~--------~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKL-ISNSSRTLV--------YDNGTLDILITTVKDTGSFTCIASNAAGEATATVE 71 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEE-ecCCCeEEE--------ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEE
Confidence 678999999999999999999754331 333332221 13467999999999999999999999999988888
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 72 l~v 74 (74)
T cd05764 72 LHI 74 (74)
T ss_pred EEC
Confidence 764
No 82
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=4.7e-13 Score=88.68 Aligned_cols=72 Identities=29% Similarity=0.504 Sum_probs=59.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.++|++++..+.... ........|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 6789999999999999999999998775432 23334678999999999999999999999887 455566554
No 83
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=2.6e-13 Score=93.05 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=58.5
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCee--eeeec-Cce-eEEeee--eecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQ--QVLTN-NQH-YSISHF--ATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~--~~~~~-~~~-~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
|+.+.|.|.+.|.|.|.++|++++.. ..+.. ... ...... ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 67899999999999999999996421 00111 111 111111 0111123457999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999877
No 84
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=2e-13 Score=90.30 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=56.2
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeee-eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQV-LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.++|++++.... .....++... .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-------PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-------cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 4689999999999999999986411 1111122111 1245799999999999999999999999999998887
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 6
No 85
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.49 E-value=2e-13 Score=92.40 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=62.1
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....|+.+.|.|.+.|.|.|.+.|++++.. +........ ......|.|.++..+|+|.|+|.|.|..|...
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKP--LTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcC--CcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 456799999999999999999999999887 322211111 11346799999999999999999999999988
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 76 ~~~~v~v 82 (82)
T cd05856 76 ATYKVDV 82 (82)
T ss_pred EEEEEeC
Confidence 8888754
No 86
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.49 E-value=3.2e-13 Score=92.68 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=58.3
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCC----eeeeeecCceeEEeeeee----cCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKED----TQQVLTNNQHYSISHFAT----ADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
|+.+.|.|.+.|.|.|.+.|++++ .. +............. ........|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSK--YGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcE--eCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 678999999999999999999853 22 21111111110000 011123689999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999998877
No 87
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.49 E-value=1.8e-13 Score=89.68 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++.. +... ..... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~--~~~~-~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGE--LPAD-RTKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeE--CCCC-ceeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47899999999999999999876 3221 11110 13467999999999999999999999999999988876
No 88
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=2.2e-13 Score=90.85 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=62.2
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+.+|+.+.|.|.+.+. .+.+.|++++.. +....++.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~--l~~~~~~~~---------~~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQ--LGENNRTRI---------TGEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcC--CCCCceEEE---------eCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 4456789999999999886 568999999987 544444432 2347999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 71 ~~~~~~v~V 79 (79)
T cd04973 71 DTTYFSVNV 79 (79)
T ss_pred ccEEEEEeC
Confidence 888877654
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.49 E-value=3.7e-13 Score=89.23 Aligned_cols=72 Identities=28% Similarity=0.566 Sum_probs=55.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVE 319 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~ 319 (386)
++|.|.+.|.|.|.+.|++++.. +.... .+... .....|.|.++..+|+|.|.|.|.|..|.... .+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTP--LSDGQGNYSVS-------SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEE--CCCCCccEEEe-------CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 57999999999999999999987 43322 22211 12458999999999999999999999998754 555
Q ss_pred EEEE
Q psy8823 320 LFES 323 (386)
Q Consensus 320 l~v~ 323 (386)
|.|.
T Consensus 72 l~v~ 75 (77)
T cd05760 72 LSII 75 (77)
T ss_pred EEEe
Confidence 5553
No 90
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.48 E-value=3.6e-13 Score=92.10 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=63.2
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+..+.+.+|++++|.|.+.+. .+.+.|++++..+. ..++.... ...+|.|.+++.+|+|.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~---------------~~~~~~~~----~~~~L~I~~v~~~D~G~ 69 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV---------------PPRLQLSN----DNRTLTFNNVTRSDTGH 69 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC---------------CCCEEEeC----CCCEEEECcCChhhCEE
Confidence 345678999999999999988 88999999875431 11222211 12379999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.+.|..+...+..+.|.|
T Consensus 70 Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 70 YQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEEcCCCCEEeeeEEEEe
Confidence 999999988887788888776
No 91
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.48 E-value=5.6e-13 Score=92.84 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=64.9
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----------eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----------RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
...+..|+.+.|.|.+.|+|+|.+.|+|++..+........ ..+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~- 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV- 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence 45677899999999999999999999999998865443211 1357999999999999999999999887
Q ss_pred eeeeEEEEEE
Q psy8823 214 TRRNIAVEVE 223 (386)
Q Consensus 214 ~~~~~~l~v~ 223 (386)
.+.++.|.|+
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 5666777664
No 92
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.48 E-value=2.9e-13 Score=85.94 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=53.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|+|..+... .....|.|.++..+|+|.|+|.+.|..+. ..+++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 479999999999999999999887532 23568999999999999999999999886 445555544
No 93
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=7.2e-13 Score=90.20 Aligned_cols=76 Identities=30% Similarity=0.482 Sum_probs=62.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEE--------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY--------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.++|.|.+.|.|++.++|++++..+..... ... ..+.|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEE
Confidence 78899999999999999999999987754322 111 1257999999999999999999999998 6678888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~~P 85 (88)
T cd05735 80 TVQEPP 85 (88)
T ss_pred EEeCCC
Confidence 887765
No 94
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.47 E-value=4.3e-13 Score=87.22 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=57.0
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|+|++..+............|.|.++..+|+|.|+|.+.|..+. ....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 479999999999999999999988766544456778999999999999999999998876 444444443
No 95
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.46 E-value=7.6e-13 Score=88.23 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=61.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+...+.+|+.++|.|.+.+. .+.+.|+|+|..+.........+..|.|.++..+|+|.|+|.+.|..+. ....+.+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~ 78 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN 78 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence 34568899999999999886 5689999999888665555555678999999999999999999998776 34444443
No 96
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.46 E-value=6.1e-13 Score=88.28 Aligned_cols=74 Identities=24% Similarity=0.547 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +........... .....|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMD--ITPKLSKQLTLI-----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEE--CCCCCCccEEEe-----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 46899999999999999999987 333222211111 12357999999999999999999999999999999988
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 5
No 97
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.46 E-value=1.7e-12 Score=89.09 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=63.5
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+....+.+|+.+.|.|.+.|.|.|.++|++++..+....... .....|.|.++..+|.|.|+|.|.|..|. ....
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEE
Confidence 344568899999999999999999999999998775443321 12458999999999999999999999987 4555
Q ss_pred EEEE
Q psy8823 218 IAVE 221 (386)
Q Consensus 218 ~~l~ 221 (386)
+.|.
T Consensus 86 ~~L~ 89 (90)
T cd04972 86 VQVT 89 (90)
T ss_pred EEEe
Confidence 5554
No 98
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.46 E-value=1.3e-12 Score=89.84 Aligned_cols=89 Identities=17% Similarity=0.350 Sum_probs=63.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|....+..|+++.|.|.+.+.|. .+.|++.+.... ....++... .......+|.|.+++.+
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~-------------~~~~~~~~~-~~~~~~~~L~I~~v~~~ 67 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKL-------------VTQQQISVV-QNDDVRSTLTIYNANIE 67 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEe-------------ccCCCEEEE-eCCCCEEEEEEecCCcc
Confidence 566778888999999999999998864 899998433210 011122211 12234568999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
|+|.|+|.+.|..+...++.+.|.
T Consensus 68 D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 68 DAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred cCEEEEEEEEcCCCCcceeEEEEE
Confidence 999999999987666656666665
No 99
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.46 E-value=9.9e-13 Score=86.89 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=58.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.++|++++..+.... .....+..|.|.+++..|+|.|+|.+.|..|. ...++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 6789999999999999999999998875322 12234568999999999999999999999997 556666655
No 100
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.45 E-value=1e-12 Score=92.80 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=66.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+....+.+|+++.|.|.+.+.|.+.+.|+|++..+...... . ..+.....+.......+.+..+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~-------~~~~~~~~~~~~~~~~i~~~~~ 71 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD--P-------RSHRIVLPSGSLFFLRVVHGRK 71 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC--C-------CcceEEecCCcEEEEEeeccCC
Confidence 477888888889999999999999999999999999988654221000 0 0000011111000012223344
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+.+|+|.|+|.+.|..+...+..+.|.|
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCcCEEEEEEEEccccceecceEEEEe
Confidence 7899999999999988776777777765
No 101
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.45 E-value=7.9e-13 Score=89.53 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCcEEEEEEEEec--CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 240 QYDMDLECHVEAY--PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
|+.+.|.|.+.|. |.+.+.|.+++... ...................+.|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR--GRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc--CCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 6889999999999 77899999887652 1111110000111112346789999999999999999999999999999
Q ss_pred EEEEE
Q psy8823 318 VELFE 322 (386)
Q Consensus 318 ~~l~v 322 (386)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 88876
No 102
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.45 E-value=2e-12 Score=90.10 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=65.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.|.|...+....+..|+.++|.|.+.|.|.+.++|++++..+..... ....++..... .....|.|.++
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~---------~~~~~~~v~~~--~~~~~L~I~~v 70 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEK---------TLDGHIVVRSH--ARVSSLTLKYI 70 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCcc---------ccCccEEEEcC--ccEEEEEEecC
Confidence 46777776666677799999999999999999999997754321100 01122222211 22358999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 71 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 96 (97)
T cd05869 71 QYTDAGEYLCTASNTIGQD-SQSMYLE 96 (97)
T ss_pred ccCcCEEEEEEEecCCCCe-eEEEEEE
Confidence 9999999999999876654 4555554
No 103
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.45 E-value=1.6e-12 Score=88.95 Aligned_cols=94 Identities=19% Similarity=0.361 Sum_probs=70.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC-CeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~ 302 (386)
+|.+ .......+.+|+.+.|.|.+.+.|+| .+.|..++..+......++.+..... .....+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence 3444 55667778899999999999999998 68888887652222234555544322 23367889999998766 799
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|.|.|.|.+|++...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988876
No 104
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.44 E-value=1.2e-12 Score=85.62 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=53.8
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE--ee---eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY--RG---SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~--~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+.|.|.+.|.|.|.++|+|++..+...... .. .+ .+|.|.++..+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEe
Confidence 579999999999999999999887643222 21 11 27999999999999999999999997 44455554
No 105
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.44 E-value=3.5e-12 Score=87.97 Aligned_cols=78 Identities=32% Similarity=0.614 Sum_probs=63.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......... ...|.|.++..+|+|.|+|.+.|..|. ....
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~ 88 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQ 88 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEE
Confidence 45678999999999999999999999999999877654433222 358999999999999999999999987 4444
Q ss_pred EEE
Q psy8823 218 IAV 220 (386)
Q Consensus 218 ~~l 220 (386)
+.|
T Consensus 89 ~~l 91 (92)
T cd05747 89 FTL 91 (92)
T ss_pred EEe
Confidence 443
No 106
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=2.1e-12 Score=88.76 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=61.1
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+.+.|.|.+.|.| +.+.|++. +.. +....+..... .....+.|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~--~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEK--LVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCE--eccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 44556788999999999999996 49999974 443 32222222211 112457899999999999999999999
Q ss_pred CCC-ceeeEEEEEE
Q psy8823 310 KLG-TSEKTVELFE 322 (386)
Q Consensus 310 ~~g-~~~~~~~l~v 322 (386)
..| ..++++.|.|
T Consensus 79 ~~g~~~~~sv~l~~ 92 (92)
T cd04977 79 AKGTESEATVNLKI 92 (92)
T ss_pred CCCCcceeEEEEEC
Confidence 965 4566776653
No 107
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.44 E-value=3.5e-12 Score=88.71 Aligned_cols=80 Identities=30% Similarity=0.535 Sum_probs=65.5
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
....+..|+.+.|.|.+.|.|.+.+.|++++..+....... ..+..|.|.+++.+|.|.|+|.+.|..|. ....+.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~ 89 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIH 89 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEE
Confidence 34568899999999999999999999999998876542221 12457999999999999999999999997 566777
Q ss_pred EEEE
Q psy8823 220 VEVE 223 (386)
Q Consensus 220 l~v~ 223 (386)
|.|.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 7764
No 108
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=1.7e-12 Score=84.63 Aligned_cols=69 Identities=29% Similarity=0.604 Sum_probs=56.1
Q ss_pred cEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 152 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++.|.|.+.|.|.|.++|+|++..+....... .....|.|.+++.+|+|.|+|.|.|..|. ....+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEE
Confidence 47899999999999999999998876554433 34557899999999999999999999997 44555544
No 109
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=1.4e-12 Score=86.62 Aligned_cols=72 Identities=31% Similarity=0.469 Sum_probs=59.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.+.|++++..+..... .......|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 67899999999999999999999988765432 2334678999999999999999999999887 555666655
No 110
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=1.8e-12 Score=89.01 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=54.2
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee-E
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK-T 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~ 317 (386)
+..+.|.|.+.|+|.|.++|++++..+.. ...++.. .++.|.|.++. .+|+|.|+|.|.|..|.... .
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~-~~~~~~~---------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 88 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDL-TNDRYSM---------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSRE 88 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccC-CCCeEEE---------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEcc
Confidence 45799999999999999999999987321 1222221 35679999885 68999999999999998754 4
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 89 a~l 91 (93)
T cd05849 89 ATL 91 (93)
T ss_pred EEE
Confidence 443
No 111
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.43 E-value=1.5e-12 Score=85.37 Aligned_cols=68 Identities=32% Similarity=0.523 Sum_probs=53.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE-ee----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY-RG----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.++|+|++..+...... .. .. ..|.|.++..+|+|.|+|.|.|..|. .+....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEe
Confidence 579999999999999999999887643322 22 11 26999999999999999999999997 44555554
No 112
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=1.7e-12 Score=85.32 Aligned_cols=71 Identities=31% Similarity=0.532 Sum_probs=58.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.+.++|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEE
Confidence 67899999999999999999999988765443332 3467999999999999999999999987 44555554
No 113
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=1.7e-12 Score=90.19 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=59.1
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec-----ccCCCeEEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI-----EKRQYGSYIC 305 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C 305 (386)
.+....+..|+++.|.|.+.|.|.|.+.|++++..+......+... ..++.|.|.++ ..+|.|.|+|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~--------~~~~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ--------LPNGSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE--------ccCCeEEEeeeeccCCCCCcCEEEEE
Confidence 3445566789999999999999999999999998732222111111 12344666665 5899999999
Q ss_pred EEEcC-CCce-eeEEEEE
Q psy8823 306 RAANK-LGTS-EKTVELF 321 (386)
Q Consensus 306 ~a~n~-~g~~-~~~~~l~ 321 (386)
.|.|. .|.. +..+.|.
T Consensus 77 ~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 77 VAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEECCccCcEEEeeeEEe
Confidence 99999 9977 4456554
No 114
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=4.8e-13 Score=90.19 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=57.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCee--eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQ--QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
|+.+.|.|.+.|.|.|.+.|++++.. ........... .. .......|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRG-NV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccC-CE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 67899999999999999999997431 01111110000 00 00124689999999999999999999999999999
Q ss_pred EEEEE
Q psy8823 318 VELFE 322 (386)
Q Consensus 318 ~~l~v 322 (386)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 88864
No 115
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=2.6e-12 Score=86.74 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=60.2
Q ss_pred ccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC--ceE------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGGHPTP--RISWRRENNAILPTG--GSI------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
++++|.|.+.|.|.+ .++|++++..+.... ... ...+.|.|.+++..|+|.|+|.|.|..+. .+..+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEE
Confidence 468999999999876 689999998774321 111 13468999999999999999999999987 6778888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888765
No 116
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=1.7e-12 Score=83.64 Aligned_cols=59 Identities=29% Similarity=0.505 Sum_probs=50.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|.|.+.|.|.|.++|+|++..+.... ....+..|.|.++..+|+|.|+|.+.|..|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence 4689999999999999999999886543 2234567999999999999999999999886
No 117
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.42 E-value=1.3e-12 Score=86.78 Aligned_cols=71 Identities=18% Similarity=0.384 Sum_probs=55.8
Q ss_pred CCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+++.|.|.+.|.|.| ++.|++++.. +... . ....+.|.|..+ .|.|.|.|.|.|
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~--l~~~--~---------~~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSP--LGDP--P---------APSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEE--CCCC--C---------CCCCCEEEEccc--cCCeEEEEEEEe
Confidence 4456778899999999999999999 7999999987 3221 1 013457888877 478999999999
Q ss_pred CCCceee
Q psy8823 310 KLGTSEK 316 (386)
Q Consensus 310 ~~g~~~~ 316 (386)
..|....
T Consensus 69 ~~G~~~s 75 (81)
T cd05749 69 AKGVTTS 75 (81)
T ss_pred ccCcEEe
Confidence 9996654
No 118
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=5.6e-13 Score=91.58 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=62.2
Q ss_pred ccccCCCcEEEEEEEEe-----cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 235 LGQALQYDMDLECHVEA-----YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
..+.+|+.+.|.|.+.| .|.+.+.|++++.............. .....|.|.++..+|+|.|+|.+.|
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~-------~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH-------QQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee-------ecCCeEEEccCCcccCeEEEEEEcC
Confidence 44567999999999988 68889999999866322211111111 1246799999999999999999999
Q ss_pred CCCceeeEEEEEE
Q psy8823 310 KLGTSEKTVELFE 322 (386)
Q Consensus 310 ~~g~~~~~~~l~v 322 (386)
..|..+.++.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9999999888764
No 119
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.42 E-value=1.3e-12 Score=84.79 Aligned_cols=68 Identities=35% Similarity=0.687 Sum_probs=55.2
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEE
Confidence 479999999999999999998766544334445678999999999999999999999987 44555554
No 120
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=1.8e-12 Score=83.59 Aligned_cols=68 Identities=18% Similarity=0.378 Sum_probs=51.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|+|++.|++++.+ +... ..+.. ....|.|.++..+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~--l~~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLP--AAEKCSRYHV---------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEE--CCCCCcEEEe---------CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 36899999999999999999987 4332 22211 234799999999999999999999866555544443
No 121
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.41 E-value=3.1e-12 Score=87.36 Aligned_cols=80 Identities=31% Similarity=0.552 Sum_probs=64.6
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
+....+.+|+++.|.|.+ .|.|.+.+.|++++..+....... ...+.|.|.+++.+|+|.|+|.+.|..|...+..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 345678899999999998 788999999999998876533222 23568999999999999999999999887666665
Q ss_pred EEE
Q psy8823 219 AVE 221 (386)
Q Consensus 219 ~l~ 221 (386)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
No 122
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=5.2e-12 Score=88.21 Aligned_cols=96 Identities=20% Similarity=0.384 Sum_probs=64.8
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|.. +.+..+.+|++++|.|.+.+.|.+.+.|+++..... +.... ...+.++... ...+..+|.|.++
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~-----~~~~~--~~~~~r~~v~--~~~~~~~L~I~~v 71 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHT-----FSEGD--KSPDGRIEVK--GQHGESSLHIKDV 71 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCce-----eccCC--cCcCceEEEe--ecCCeeEEEEeeC
Confidence 355643 667889999999999999999999999999643210 00000 0012233332 2224568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 72 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 97 (98)
T cd05870 72 KLSDSGRYDCEAASRIGGH-QKSMYLD 97 (98)
T ss_pred CcCCCEEEEEEEeccCCcc-eeEEEEe
Confidence 9999999999999876643 4455554
No 123
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.41 E-value=1.9e-12 Score=88.35 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=62.3
Q ss_pred eccceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
.|....+.+|+++.|.|.+ .+.|.+.+.|++++..+.. .+.++.... +.+|.|.+++.+|+
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~-------------~~~~~~~~~-----~~~L~I~~~~~~D~ 63 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL-------------DNERVRIVD-----DGNLLIAEARKSDE 63 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC-------------CCCCEEEcc-----CCEEEEeECCcccC
Confidence 3566778899999999998 6788889999998765421 012222221 23799999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|+|.+.|..+...+..+.|.|
T Consensus 64 G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 64 GTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EEEEEEEEeccCceeeeeEEEEC
Confidence 99999999987776666666543
No 124
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.41 E-value=5.7e-12 Score=86.61 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=62.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ...
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eee
Confidence 4567789999999999999999999999999987765433221 1247999999999999999999999887 444
Q ss_pred eEEEE
Q psy8823 217 NIAVE 221 (386)
Q Consensus 217 ~~~l~ 221 (386)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05891 87 DVTVS 91 (92)
T ss_pred EEEEE
Confidence 44443
No 125
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.41 E-value=5e-12 Score=87.23 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=57.5
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+|+.++|.|.+.|.|.|.++|+|++..+..... ....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 478999999999999999999999988754322 23345688998875 6999999999999999865555443
No 126
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.41 E-value=2.7e-12 Score=87.35 Aligned_cols=77 Identities=25% Similarity=0.490 Sum_probs=62.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce---E--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---I--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+.+|+.+.|.|.+.|.|.+.+.|+|++..+...... . .....|.|.++..+|+|.|+|.+.|..|. ....+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEE
Confidence 35778999999999999999999999999887654322 1 12457999999999999999999999997 556666
Q ss_pred EEE
Q psy8823 220 VEV 222 (386)
Q Consensus 220 l~v 222 (386)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 653
No 127
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.41 E-value=1.9e-12 Score=85.84 Aligned_cols=73 Identities=19% Similarity=0.444 Sum_probs=54.9
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
+.|.|.+.| .|.|.+.|++++.. +............ .......|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~--l~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKE--LNRKNKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCee--ccccCCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 99999999999887 4332222111111 1123578999999999999999999999999887765
No 128
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.40 E-value=4.7e-12 Score=88.38 Aligned_cols=94 Identities=24% Similarity=0.365 Sum_probs=65.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... .. ..+.++... .......|.|.++
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~-------~~--~~~~~~~~~--~~~~~~~L~I~~v 69 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEG-------DK--SLDGRIVVR--GHARVSSLTLKDV 69 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCC-------Cc--cccceEEEe--CCccEEEEEECcC
Confidence 45664 455677899999999999999999999999987433110 00 011222222 2234568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 70 ~~~D~G~Y~C~a~N~~G~~-~~s~~l~ 95 (96)
T cd05732 70 QLTDAGRYDCEASNRIGGD-QQSMYLE 95 (96)
T ss_pred CcCcCEEeEEEEEeCCCCc-EEEEEEe
Confidence 9999999999999876654 5555554
No 129
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.40 E-value=6.8e-12 Score=89.09 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=62.1
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE---------eeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---------RGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.|..+.|.|.+.|.|.+.++|++++..+........ ..+.|.|.++. .+|.|.|+|.|.|..|. ....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence 467899999999999999999999988754332111 13579999997 58999999999999998 57788
Q ss_pred EEEEEecc
Q psy8823 219 AVEVEFAP 226 (386)
Q Consensus 219 ~l~v~~~p 226 (386)
.|.+...|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88887665
No 130
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.40 E-value=7.1e-12 Score=86.06 Aligned_cols=80 Identities=24% Similarity=0.542 Sum_probs=58.8
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..+..+.+|+++.|.|.+.+.+.+.+.|++++... +..+......+.++..... .....+|.|.+++.+|+|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~------~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~ 76 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT------LYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGE 76 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE------EEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEE
Confidence 35677999999999999999888999999987532 1112222334455543322 2356799999999999999
Q ss_pred EEEEeEE
Q psy8823 111 YRCQVII 117 (386)
Q Consensus 111 Y~C~~~~ 117 (386)
|+|.+..
T Consensus 77 YtC~~~t 83 (95)
T cd05882 77 YTCSIFT 83 (95)
T ss_pred EEEEEEe
Confidence 9999875
No 131
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.40 E-value=6.5e-12 Score=82.81 Aligned_cols=69 Identities=26% Similarity=0.498 Sum_probs=56.3
Q ss_pred cEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 152 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
.+.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..|. .+..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEE
Confidence 478999999999999999999998754443332 2468999999999999999999999987 55555554
No 132
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=2.5e-12 Score=83.82 Aligned_cols=69 Identities=33% Similarity=0.697 Sum_probs=55.9
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|++++..+...... ......|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 469999999999999999998876543222 224568999999999999999999999997 556666665
No 133
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.39 E-value=4.2e-12 Score=84.30 Aligned_cols=75 Identities=28% Similarity=0.514 Sum_probs=59.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+..+.+.+|+++.|.|.+.|.|.| .|+|++++..+... .....+.|.|..+ .|+|.|.|.|.|..|...++...|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 456788999999999999999999 79999999887541 1223467888887 478999999999999755555443
No 134
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.39 E-value=4.5e-12 Score=81.73 Aligned_cols=61 Identities=26% Similarity=0.560 Sum_probs=50.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.++|.|.+.|.|.|.++|+|++..+............|.|.++. |+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE
Confidence 6789999999999999999999998875544333345578899874 799999999999987
No 135
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.39 E-value=3.1e-12 Score=84.15 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=56.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCC--CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPT--GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|++..+... .... ..++.|.|.+++.+|+|.|+|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999999876532 2222 235679999999999999999999999986666666665
No 136
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.39 E-value=3.6e-12 Score=86.23 Aligned_cols=76 Identities=29% Similarity=0.598 Sum_probs=61.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....|++++|.|.+.+.|.+.++|++++..+........ ....|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEe
Confidence 3456799999999999999999999999987754433222 3467999999999999999999999887 55555554
No 137
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.39 E-value=2.7e-12 Score=83.20 Aligned_cols=66 Identities=30% Similarity=0.606 Sum_probs=54.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
|.|.|.+.|.|.|.++|+|++..+........ ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASVSMV 67 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc-EEEEEE
Confidence 57999999999999999999988765544332 3678999999999999999999999987 444443
No 138
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.39 E-value=1.3e-12 Score=87.24 Aligned_cols=71 Identities=24% Similarity=0.596 Sum_probs=52.0
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-e
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-E 315 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~ 315 (386)
++|.|.+.|+|.|.+.|++++...... ...++.. ...+.|.|.++..+|+|.|.|.|.|..|.. +
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 579999999999999999975431110 1111111 135689999999999999999999999977 4
Q ss_pred eEEEEE
Q psy8823 316 KTVELF 321 (386)
Q Consensus 316 ~~~~l~ 321 (386)
.++.|.
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 566654
No 139
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=9.7e-12 Score=85.86 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=56.9
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC--ceEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG--GSIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.++|.|.+.|.|.+.++|+++|..+.... .....++.|.|.++. ..|+|.|+|.|.|..|...++.+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4689999999999999999999998875332 233345678898765 5999999999999999866665554
No 140
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=2.5e-12 Score=82.85 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=49.2
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+.|.|.+.|.|.|.+.|+|++..+..... ....+.+|.|.++..+|+|.|+|.+.+...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 46899999999999999999988765422 333456899999999999999999999643
No 141
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=2.9e-12 Score=84.57 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=55.7
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
|.+...++...+.+|++++|.|.+.+.|.+ .+.|++++.. +.. ....|.|.++ .+|+|.|+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~--l~~---------------~~~~l~i~~~-~~dsG~Y~ 62 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL--LET---------------TTNSYRIRAA-NNDSGEYR 62 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEE--eec---------------cCCeEEEeec-ccCCEEeE
Confidence 345666777888999999999999998865 7999999987 311 2567899999 99999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|.|.|..
T Consensus 63 C~a~~~~ 69 (78)
T cd05752 63 CQTQGSS 69 (78)
T ss_pred EECCCCc
Confidence 9999863
No 142
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=4.4e-12 Score=86.09 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=60.1
Q ss_pred ccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc-----eE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGGHPTP--RISWRRENNAILPTGG-----SI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-----~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+++.|.|.+.+.|.+ .+.|++++..+..... .. ...+.|.|.+++..|+|.|+|.+.|..+. .+....|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEE
Confidence 468999999998877 6799999988753321 11 13567999999999999999999998887 6778888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888765
No 143
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=5.3e-12 Score=87.73 Aligned_cols=81 Identities=31% Similarity=0.589 Sum_probs=62.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCC-----CCCCCeEEEEEEecC-CCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQI-----TKEDRGTYYCVAENG-VGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~ 212 (386)
+....+.+|+++.|.|.+.|.|.+.++|+|++..+..... ....++.+.|.++ +..|.|.|+|.+.|. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 3445677899999999999999999999999988764332 1223455666665 689999999999999 888
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
..++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 6677766653
No 144
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.38 E-value=9.6e-12 Score=85.43 Aligned_cols=71 Identities=30% Similarity=0.433 Sum_probs=57.4
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCC-CceEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPT-GGSIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|..+.|.|.+.|.|.|.++|++++..+... ......++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 457999999999999999999999887532 2333456789999885 6899999999999999866665554
No 145
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.38 E-value=4.1e-12 Score=84.21 Aligned_cols=70 Identities=29% Similarity=0.639 Sum_probs=55.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCce-eeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|+|..+....... .....|.|.++..+|+|.|+|.+.|..|... +..++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999998875543221 1245899999999999999999999988742 34666655
No 146
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.37 E-value=4.5e-12 Score=83.76 Aligned_cols=67 Identities=19% Similarity=0.469 Sum_probs=48.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc----CCCeEEEEEEEcCCCceee
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK----RQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 316 (386)
+.|.|.+.|.|.|+++|++++..+.......+... ...+.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-------~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-------PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-------CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47899999999999999999987322222222211 1356777877764 3789999999999998765
No 147
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=2.6e-12 Score=85.18 Aligned_cols=67 Identities=22% Similarity=0.486 Sum_probs=49.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc----CCCeEEEEEEEcCCCceee
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK----RQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 316 (386)
+.|.|.+.|.|.|+++|++++..+......++... ...+.|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-------~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-------PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-------CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47899999999999999999987322222222211 1356788888754 7899999999999997654
No 148
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.37 E-value=5.6e-12 Score=84.04 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred ccEEEEEEeee--eCCCeEEEEEcCeeeCC--CCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGG--HPTPRISWRRENNAILP--TGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~--~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+++.|.|.+.+ .+++.+.|+++|..+.. ..... . ..+.|.|.+++..|+|.|+|.|.|..+. .+....|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEE
Confidence 46899999966 45788999999998863 22221 1 2357999999999999999999999987 6788888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 888776
No 149
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.37 E-value=4.6e-12 Score=83.72 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=49.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc----cCCCeEEEEEEEcCCCceeeE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE----KRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+.|.|.+.|+|.|+++|++++..+......++... ...+.|.|..+. .+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-------RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-------CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899999999999999999986323333333221 135678888764 247999999999999977553
No 150
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.36 E-value=8.8e-12 Score=82.04 Aligned_cols=68 Identities=29% Similarity=0.451 Sum_probs=53.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE--e---eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY--R---GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~--~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.++|+|++..+...... .. . ...|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEe
Confidence 479999999999999999999887643221 11 1 126999999999999999999999997 44455554
No 151
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.35 E-value=1.2e-11 Score=81.24 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=52.6
Q ss_pred EEEEeeeeCCCeEEEEEcCeeeCCCCceE---------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 155 LECFAGGHPTPRISWRRENNAILPTGGSI---------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 155 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.+.|.|.|.++|+|+|..+....... .....|.|.++..+|+|.|+|.|+|..|. .++++.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEe
Confidence 68999999999999999999886554321 12457999999999999999999999997 4455544
No 152
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.35 E-value=2.3e-11 Score=82.00 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC--ceeeE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG--TSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~ 317 (386)
|++++|.|.+.+.|.+.+.|++++.. ....... ..............|.|.+++.+|+|.|+|.|.|..+ ...++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~--~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKD--IGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCcc--CCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 68899999999999999999987754 1110000 0011111222467899999999999999999999876 66777
Q ss_pred EEEEEE
Q psy8823 318 VELFES 323 (386)
Q Consensus 318 ~~l~v~ 323 (386)
+.|.|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 777764
No 153
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=3.1e-12 Score=84.41 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=57.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|.+++.|+...+.+|++|+|.|.+.+.+. ..+.|++++..+. . ...+|.|.++
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------------~------------~~~~l~i~~~ 54 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------------T------------TTNSYRIRAA 54 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------------c------------cCCeEEEeec
Confidence 45777888888999999999999987665 4699999885430 0 1127899999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
.+|+|.|+|++.+. ..+..+.|.
T Consensus 55 -~~dsG~Y~C~a~~~---~~S~~v~l~ 77 (78)
T cd05752 55 -NNDSGEYRCQTQGS---SLSDPVHLE 77 (78)
T ss_pred -ccCCEEeEEECCCC---cCCCCEEEe
Confidence 99999999998742 444445554
No 154
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.35 E-value=1.6e-11 Score=81.81 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=52.3
Q ss_pred EEEEeeeeCCCeEEEEEcCeeeCCCCceE-----------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 155 LECFAGGHPTPRISWRRENNAILPTGGSI-----------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 155 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|.|.+.|.|.|.++|+|+|..+....... .....|.|.+++.+|+|.|+|.|.|..|. .+..+.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISA 78 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEe
Confidence 68999999999999999999887654321 11346999999999999999999999998 4444444
No 155
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.34 E-value=1.1e-11 Score=85.41 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=56.8
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+++..+.+|++++|.|.+.+.+.+.+.|++.+... +. .+......++|+.... ......+|.|.+++.+|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~----l~--~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~ 76 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQT----LY--FDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQ 76 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeE----EE--EcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEE
Confidence 45677999999999999998888899999754321 11 1111112345555422 22355689999999999999
Q ss_pred EEEEeEEc
Q psy8823 111 YRCQVIIG 118 (386)
Q Consensus 111 Y~C~~~~~ 118 (386)
|+|.+...
T Consensus 77 Y~C~~~t~ 84 (95)
T cd07701 77 YTCSLFTM 84 (95)
T ss_pred EEEEeEee
Confidence 99998863
No 156
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.34 E-value=1.9e-11 Score=84.14 Aligned_cols=69 Identities=23% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 316 (386)
.++.+.|.|.+.|.|.|.++|++++..+.......+.. ..+.|.|.++. .+|+|.|+|.|+|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~---------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL---------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE---------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 34679999999999999999999998732222222221 34578898876 48999999999999997644
No 157
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.33 E-value=1.2e-11 Score=84.94 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=58.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeC--------CCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAIL--------PTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.+.|.|.+.|.|.+.+.|++++.... ...... ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 6789999999999999999999886531 111111 12467999999999999999999999997 5667888
Q ss_pred EEEe
Q psy8823 221 EVEF 224 (386)
Q Consensus 221 ~v~~ 224 (386)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 8765
No 158
>PHA03376 BARF1; Provisional
Probab=99.33 E-value=4.3e-11 Score=88.67 Aligned_cols=139 Identities=19% Similarity=0.342 Sum_probs=79.1
Q ss_pred eeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecC--CCcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD--TASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~ 108 (386)
..+..|+.+.|+|..... ....|.|+|.+... +.......+.......-.++.+.+ ...++.+|.|.+++.+|.
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~-~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGE-EQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCC-CCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 447799999999997622 33459999965311 111222222222222222322222 234888999999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
|.|+|.+.....+. ...-.|.+-.|-........ .....-+..++.|.+.|+|.|.+.|..+.+.
T Consensus 100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~-~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCce-eeeeeeeeeecceEEEEecc-ccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 99999998543222 22222222221111110000 0011145678999999999999999987654
No 159
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.32 E-value=1.2e-11 Score=81.03 Aligned_cols=69 Identities=38% Similarity=0.682 Sum_probs=54.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 4799999999999999999988764432221 23468999999999999999999999887 455666554
No 160
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=1.1e-11 Score=83.22 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=58.9
Q ss_pred eeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+.++...+.+|++|+|.|.+.. .+...+.|+|++..+.. ...+..|.|.+++.+|
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------------------------~~~~~~l~I~~~~~~d 59 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------------------------SHSNSNLSIPQATLSD 59 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------------------------cCCCceEEECccCHHH
Confidence 4445557899999999999853 45567999998753310 0112379999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEE
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+|.|+|.+.+..+...+..+.|+|
T Consensus 60 sG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 60 SGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CEEEEEEEEeCCceecCCCEEEEC
Confidence 999999999877766677666654
No 161
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.30 E-value=4.6e-11 Score=80.49 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEc
Q psy8823 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 39 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 118 (386)
|++++|.|.+.+.+.+.+.|++.+...... .. . .............+|.|.+++.+|+|.|+|.+.+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~---------~~-~--~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKG---------IP-E--VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCC---------ce-E--EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 789999999998888999999876532100 00 0 01111112223558999999999999999999876
Q ss_pred cc-ceeeeEEEEEEe
Q psy8823 119 IN-NKISAEVDLQVR 132 (386)
Q Consensus 119 ~~-~~~~~~~~l~v~ 132 (386)
.. ...+..+.|.|.
T Consensus 69 ~~~~~~~~sv~i~V~ 83 (84)
T cd05861 69 TQDQKAFKKVNITVH 83 (84)
T ss_pred ccCcceeEEEEEEEe
Confidence 43 345677777775
No 162
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.30 E-value=3.7e-11 Score=79.95 Aligned_cols=64 Identities=31% Similarity=0.537 Sum_probs=53.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
|+++.|.|.+.|.|.|.++|++++..+........ ....|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 67899999999999999999999887754433221 23679999999999999999999988873
No 163
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.30 E-value=1.9e-11 Score=84.00 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=59.1
Q ss_pred eEEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCC----CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCce
Q psy8823 144 SLVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPT----GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 214 (386)
...+.+|+.+.|.|.+.+ .|.+.++|+|++..+... ......+..|.|.++..+|+|.|+|.+.|..+. .
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-M 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-E
Confidence 456778999999999988 688899999998764321 112224578999999999999999999998876 4
Q ss_pred eeeEEEE
Q psy8823 215 RRNIAVE 221 (386)
Q Consensus 215 ~~~~~l~ 221 (386)
...+.|.
T Consensus 87 ~~~~~L~ 93 (94)
T cd05756 87 KVSISLT 93 (94)
T ss_pred EEEEEEE
Confidence 4455444
No 164
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=2.1e-11 Score=80.75 Aligned_cols=74 Identities=20% Similarity=0.410 Sum_probs=53.2
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
+.|.|.+.+ .|.+.+.|++++..+............ ......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 677899999998874322211111110 11123578999999999999999999999999888765
No 165
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.29 E-value=3.5e-11 Score=82.47 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=62.1
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+....+.+|+++.|.|.+.+ +.+.+.|++++..+..... ...++... ...|.|.+++.+|+|.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~----------~~~~~~~~------~~~L~I~~~~~~D~G~ 65 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE----------PEERLLVT------EDGLLIRSVSPADAGV 65 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC----------cCceEEEc------CCCEEEccCCHHHCEE
Confidence 34556889999999999875 7778999999865422100 01122221 1259999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEec
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
|+|.+.+.........+.|.|..
T Consensus 66 Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 66 YTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred EEEEEecCccceeEeEEEEEEec
Confidence 99999877667777778887753
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.28 E-value=5.4e-11 Score=81.71 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=53.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC------ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN------QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
...+.+|+++.|.|.+.+.|.+.+.|++++........ .++.+. ........|.|.++..+|+|.|+|.+
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEEE
Confidence 45677899999999999999999999998865222111 111111 11123578999999999999999999
Q ss_pred Ec
Q psy8823 308 AN 309 (386)
Q Consensus 308 ~n 309 (386)
..
T Consensus 82 ~t 83 (95)
T cd05882 82 FT 83 (95)
T ss_pred Ee
Confidence 87
No 167
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.28 E-value=1.8e-11 Score=80.85 Aligned_cols=69 Identities=33% Similarity=0.668 Sum_probs=53.3
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTG---GSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|++....... ... ..+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 4789999999999999999986432221 111 23468999999999999999999999887 556666665
No 168
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.28 E-value=3.6e-11 Score=79.30 Aligned_cols=71 Identities=30% Similarity=0.609 Sum_probs=54.9
Q ss_pred CccEEEEEEeeeeCCCeEEEEEc-CeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRE-NNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.|.+.|+++ +..+...... .....+|.|.++..+|.|.|+|.+.|..|. .+..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence 67899999999999999999974 5444333222 234568999999999999999999999887 45555554
No 169
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.28 E-value=3e-11 Score=80.71 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=53.6
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCC--------CCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILP--------TGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~--------~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.+.|++++..... .... .....+|.|.++..+|+|.|.|.+.|..|...++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999999999999999997543211 1111 1245789999999999999999999999986666666653
No 170
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.27 E-value=6e-11 Score=81.26 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=63.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 34567889999999999977 778999999988765432 2223345699999999999999999998766556667
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777764
No 171
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.27 E-value=3.4e-11 Score=82.53 Aligned_cols=72 Identities=24% Similarity=0.493 Sum_probs=54.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcC----eeeCCCCce-------------EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRREN----NAILPTGGS-------------IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.++|.|.+.|.|.|.++|+|++ ..+...... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 222111110 011347999999999999999999999997
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
...++.|.|
T Consensus 81 -~~~sa~L~V 89 (90)
T cd04974 81 -SHHSAWLTV 89 (90)
T ss_pred -ccCCEEEEe
Confidence 455666665
No 172
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.27 E-value=7.2e-11 Score=80.42 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=62.2
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.+..|+.+.|.|.+.+.|.+.+.|++++.. +.......... .......|.|.++..+|.|.|.|.+.|..|..+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~--~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKP--FKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEE--CcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence 355799999999999999999999999876 33222221110 112345799999999999999999999999988
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05729 79 HTYKVDV 85 (85)
T ss_pred EEEEEeC
Confidence 8888754
No 173
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.27 E-value=5.3e-11 Score=85.24 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=62.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
.+....+.+|++|+|.|.+.+.+...+.|++.........+............+|+.+..+.....++|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34566789999999999998766778999996543211111111111111345677666655668889999999999999
Q ss_pred EEEEEeEEc
Q psy8823 110 YYRCQVIIG 118 (386)
Q Consensus 110 ~Y~C~~~~~ 118 (386)
.|.|.+.+.
T Consensus 84 ~Y~C~~~~~ 92 (109)
T cd04983 84 VYFCALSES 92 (109)
T ss_pred EEEEEEecC
Confidence 999998754
No 174
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.26 E-value=3.1e-11 Score=81.95 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=60.8
Q ss_pred CCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+....+..|+.++|.|.+.+ .|.+.+.|++++.. +.... ....+.|.|.+++.+|+|.|.|.|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~--~~~~~-----------~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG--LPSRA-----------MDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc--CCCcc-----------cccCCEEEECCCCHHHCEEEEEEEecc
Confidence 44556788999999999875 67789999998865 22110 013568999999999999999999999
Q ss_pred CCceeeEEEE
Q psy8823 311 LGTSEKTVEL 320 (386)
Q Consensus 311 ~g~~~~~~~l 320 (386)
.|..++++.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 9999988776
No 175
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=6.5e-11 Score=79.23 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=56.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC-ceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-GSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+..|+++.|.|.+.+ +.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 45667899999999999864 577899999999887653 334456789999999999999999998764
No 176
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.26 E-value=1.1e-10 Score=79.51 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=59.8
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
++..+.+|++++|.|.+.+.....+.|++.+... ....+ .....+.|+.... ......+|.|.+++.+|+|.|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~-----i~~~~-~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y 77 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT-----IYFRD-VRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRY 77 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcE-----EEecC-ccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEE
Confidence 5567899999999999997777779999766322 11122 2334677887663 235688999999999999999
Q ss_pred EEEeEEc
Q psy8823 112 RCQVIIG 118 (386)
Q Consensus 112 ~C~~~~~ 118 (386)
+|.+...
T Consensus 78 ~Cqv~t~ 84 (95)
T cd05881 78 FCQLYTD 84 (95)
T ss_pred EEEEEcc
Confidence 9998743
No 177
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.26 E-value=1.3e-10 Score=78.76 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=69.6
Q ss_pred CcccccCCCcEEEEEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....+.+|+.+.|.|.++++|+|. +.|.+++.. +.+...............-.+.|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~--l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT--LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc--cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 345678999999999999999996 999999876 43333322222111223357899999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy8823 312 GTSEKTVELFES 323 (386)
Q Consensus 312 g~~~~~~~l~v~ 323 (386)
++.+.++.|.|.
T Consensus 89 ~~~s~tF~l~v~ 100 (101)
T cd05860 89 ASASVTFNVYVN 100 (101)
T ss_pred CeEEEEEEEEEe
Confidence 999999999874
No 178
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.25 E-value=3.4e-11 Score=79.76 Aligned_cols=68 Identities=26% Similarity=0.542 Sum_probs=52.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eE--EeeeEEEECCCCC----CCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG--SI--YRGSILKIPQITK----EDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
++|.|.+.|.|.|.++|+|++..+..... .. ...+.|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 47999999999999999999988753321 11 2357889988754 789999999999999865554443
No 179
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.25 E-value=6.7e-11 Score=81.14 Aligned_cols=72 Identities=26% Similarity=0.493 Sum_probs=54.1
Q ss_pred CccEEEEEEeeeeCCCeEEEEEc----CeeeCCCCceE----E---------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRE----NNAILPTGGSI----Y---------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~~~~~----~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.+.|.|.+.|.|.|.++|+++ +..+....... . ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 33332211100 0 1257999999999999999999999987
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
...+..|.|
T Consensus 81 -~~~~a~L~V 89 (90)
T cd05858 81 -SHHSAWLTV 89 (90)
T ss_pred -ccceEEEEE
Confidence 555666655
No 180
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.24 E-value=5.8e-11 Score=78.47 Aligned_cols=68 Identities=26% Similarity=0.475 Sum_probs=51.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eE--EeeeEEEECCCCC----CCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG--SI--YRGSILKIPQITK----EDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.|.+.|.|.|.++|+|++..+..... .. ..+++|.|..+.. .|.|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999999999999987632221 11 1356788877764 378999999999999866655543
No 181
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.24 E-value=2.1e-10 Score=80.10 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=61.4
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCC--ceEEe--------eeEEEECCCCCC-CCeE
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG--GSIYR--------GSILKIPQITKE-DRGT 201 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~-d~g~ 201 (386)
||.+.. .....+.+|+.+.|.|.+.|.|.| .+.|++++..+.... ..... .+.|.|.++..+ |.|.
T Consensus 2 pp~i~~--~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS--EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC--CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 444433 345568899999999999999998 699999998775432 12111 247999999994 4899
Q ss_pred EEEEEecCCCCceeeeEE
Q psy8823 202 YYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~ 219 (386)
|.|.|.|..|. ....+.
T Consensus 80 Y~C~A~N~~G~-~~~~~~ 96 (98)
T cd05758 80 YNCTAWNSFGS-GTAIIS 96 (98)
T ss_pred EEEEEEcCCCc-ccEEEE
Confidence 99999999987 334443
No 182
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.24 E-value=1.1e-10 Score=77.39 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=55.9
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce--E--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS--I--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
+.|.|.+.|.|.+.+.|+|++..+...... . ..+..|.|.++..+|.|.|+|.+.|..|. ....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 368999999999999999999887644321 1 12357999999999999999999999887 5566677664
No 183
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.22 E-value=1.6e-10 Score=80.20 Aligned_cols=91 Identities=20% Similarity=0.403 Sum_probs=59.6
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
++...+.+|++++|.|.+.+.+.+.+.|++.+... +.. . ......++++.... .....++|.|.+++.+|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~----~~~-~-~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~ 76 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT----LYF-N-DKRALRDNRIQLVN-FSANELSISISNVSLSDEGR 76 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE----EEe-c-cccccccCcEEEEc-CCCCeeEEEEccCCcccCEE
Confidence 35667899999999999987777889998744321 111 1 11111234555432 23355689999999999999
Q ss_pred EEEEeEEcccceeeeEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~ 130 (386)
|+|.+...... ++.+.|.
T Consensus 77 Y~C~~~~~~~~--~~~~~~~ 94 (95)
T cd05717 77 YTCSLYTMPVQ--TAKATVT 94 (95)
T ss_pred EEEEEecCCCc--eEEEEEE
Confidence 99998865433 4444444
No 184
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.22 E-value=4.2e-11 Score=83.11 Aligned_cols=91 Identities=22% Similarity=0.404 Sum_probs=62.7
Q ss_pred ecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCC----ceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 37 DIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTG----SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 37 ~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..|++|+|+|.... .....+.|++..... ..... ......++++..+......+++|.|.+++.+|+|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~-----i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLA-----IITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSY 76 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeE-----EEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEE
Confidence 47999999998764 344569999973221 11111 222233445544444455678999999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEe
Q psy8823 112 RCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.|.+....+......+.|.|+
T Consensus 77 ~c~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 77 RAEINTKNGVTITKEFTLHIY 97 (97)
T ss_pred EEEEEcCCCCeEEEEEEEEeC
Confidence 999987766666777777764
No 185
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.22 E-value=9.1e-11 Score=77.52 Aligned_cols=68 Identities=26% Similarity=0.486 Sum_probs=50.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCC--CCceE--EeeeEEEECCCC----CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILP--TGGSI--YRGSILKIPQIT----KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.|.+.|.|.|.++|+|++..+.. ..... ..+++|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 46999999999999999999986532 22222 235688888764 2469999999999999866555443
No 186
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.21 E-value=5.5e-11 Score=82.25 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEc
Q psy8823 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 39 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 118 (386)
|++|+|.|.........+.|+++.....................+++..+.... .+++|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-PNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-CCceEEEccCCchhcEEEEEEEEcC
Confidence 899999999876556679999987654322211111111222223333222222 2369999999999999999999876
Q ss_pred ccceeeeEEEEE
Q psy8823 119 INNKISAEVDLQ 130 (386)
Q Consensus 119 ~~~~~~~~~~l~ 130 (386)
.+......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 555555666554
No 187
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.21 E-value=1.6e-10 Score=78.25 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=54.8
Q ss_pred CccEEEEEEeeee--CCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 150 GQPVQLECFAGGH--PTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 150 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
|+.+.|.|.+.+. |.+.+.|++++..+..... .....+.|.|.+++.+|+|.|+|.+.|..+. .+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence 7889999999998 7889999987765422211 1123568999999999999999999999876 44555
Q ss_pred EEEE
Q psy8823 219 AVEV 222 (386)
Q Consensus 219 ~l~v 222 (386)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5544
No 188
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=1e-10 Score=78.77 Aligned_cols=72 Identities=26% Similarity=0.529 Sum_probs=54.1
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCe---ee-CCCCc-----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENN---AI-LPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~---~~-~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.+.|.|.+.|.|.|.++|+|++. .. ..... .......|.|.++..+|+|.|+|.+.|..|. ....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEEE
Confidence 6889999999999999999999742 11 11111 1123467999999999999999999999987 5566665
Q ss_pred EE
Q psy8823 221 EV 222 (386)
Q Consensus 221 ~v 222 (386)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 43
No 189
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.20 E-value=8.5e-11 Score=81.95 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=61.3
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccc-ccccCCceeEE----eccceeeecCCCcceEEEEEcc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP-LPISTGSSLII----RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++++.+..+.+|++|.|.|.....+...+.|||......... ..+..+..... ..+|..+.. +++|.|.+
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-----ngSL~I~~ 76 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-----NGSLLIQN 76 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-----CCcEEEec
Confidence 456667778999999999987544445799999643321111 11111111111 223333332 44999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
++.+|+|.|+|.+.+.........+.|.
T Consensus 77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 77 VTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999999876544445555544
No 190
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.20 E-value=1.9e-10 Score=77.71 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCcEEEEEEEEecCCC--eeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
|+++.|.|.+.+.+.+ .+.|..++....... ...... .........+.|.|.+++..|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 6889999999887654 789988776421111 010000 00111234678999999999999999999999999999
Q ss_pred EEEEEEE
Q psy8823 317 TVELFES 323 (386)
Q Consensus 317 ~~~l~v~ 323 (386)
+..|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 8888875
No 191
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.19 E-value=9.5e-11 Score=77.60 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=49.8
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCceE-------EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGGSI-------YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.| .|.+.+.|++++..+....... .....|.|.++..+|.|.|+|.+.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 469999998 8999999999998876543321 12467999999999999999999999987
No 192
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.18 E-value=8.9e-11 Score=78.78 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=58.5
Q ss_pred EEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 146 VVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.+.+|++++|.|.+. +.+...+.|+|++..+... .....|.|.+++.+|+|.|+|.+.+..+...++.+.|.|
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 588999999999984 4556789999999766421 134679999999999999999999988876666666654
No 193
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.18 E-value=3.6e-10 Score=77.74 Aligned_cols=68 Identities=32% Similarity=0.495 Sum_probs=53.3
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCC--CceEEeeeEEEECCCCC-CCCeEEEEEEecCCCCceee
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPT--GGSIYRGSILKIPQITK-EDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~ 216 (386)
.|+.+.|.|.+.|.|.+.++|++++..+... .......+.|.|.++.. +|+|.|+|.+.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 3467999999999999999999999877432 22333456789988774 89999999999999875443
No 194
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.17 E-value=2.6e-10 Score=78.65 Aligned_cols=84 Identities=12% Similarity=0.235 Sum_probs=58.0
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
....+.+|++++|.|.+.+.|.+.+.|++.+...... ...++... .......+|.|.+++.+|+|.|+|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEEEE
Confidence 3566789999999999999999999998654332111 11222211 1112456899999999999999999
Q ss_pred EEcCCCceeeEEEEE
Q psy8823 307 AANKLGTSEKTVELF 321 (386)
Q Consensus 307 a~n~~g~~~~~~~l~ 321 (386)
+.+..+ .+.+..|.
T Consensus 81 ~~t~~~-~~~~~~l~ 94 (95)
T cd07701 81 LFTMPV-KTSKAYLT 94 (95)
T ss_pred eEeecC-ccEEEEEE
Confidence 998533 35555554
No 195
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.17 E-value=2e-10 Score=76.92 Aligned_cols=68 Identities=18% Similarity=0.347 Sum_probs=52.7
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
|....+..|+++.|.|.+.+ +.+.+.|++++.. +... .++.+ ....|.|.+++.+|+|.|+|.|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~--i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKV--LTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEE--CCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 34556778999999999854 6779999999988 4332 23322 2456999999999999999999987
Q ss_pred C
Q psy8823 311 L 311 (386)
Q Consensus 311 ~ 311 (386)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 4
No 196
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.17 E-value=1e-10 Score=79.76 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=53.8
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCcc-ccccccc-cCCceeEEeccceeeec-CCCcceEEEEEcccCCCCCeEE
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNK-VTEPLPI-STGSSLIIRDSRFAIRY-DTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
.+.+|++|+|+|.+.+.+...+.|++++... ......+ .... ....+|+..+. ....++++|.|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~--~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGP--SKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecc--cccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 4779999999999988888889999765332 1110000 0000 01233443333 2244677999999999999999
Q ss_pred EEEeEEc
Q psy8823 112 RCQVIIG 118 (386)
Q Consensus 112 ~C~~~~~ 118 (386)
.|.+.+.
T Consensus 81 ~C~v~~~ 87 (94)
T cd07690 81 ICEVEDK 87 (94)
T ss_pred EEEECCc
Confidence 9998754
No 197
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.15 E-value=9.8e-10 Score=78.26 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=59.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccc-ccc-ccCCceeE----EeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTE-PLP-ISTGSSLI----IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~-~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i 100 (386)
+....+..|+.++|.|.+.... ...|.|.+........ .+. +..+.... ...+|..+..+...++.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3456688999999999997532 3469995533222111 111 22222221 112466666666778899999
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
.+++.+|+|.|+|.+.+...
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999997654
No 198
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.15 E-value=7.2e-10 Score=75.64 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=56.8
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+.+.+|+++.|.|... .|.+.+.||+.......... ...+.++... +..|.|.+++.+|+|.|+|
T Consensus 6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~--------~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C 70 (91)
T cd05871 6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEE--------VKTEERLIHT------ERGLLLRSLQRSDAGVYTC 70 (91)
T ss_pred EEEecCCcEEEEEECC-CCCceEEEEEECCCCCcccc--------ccccccEEEe------cCeEEEeeCChhHCEEEEE
Confidence 4578999999999964 67788999995543211000 0012233221 2369999999999999999
Q ss_pred EeEEcccceeeeEEEEEEe
Q psy8823 114 QVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~ 132 (386)
.+.+...+.....+.|.|.
T Consensus 71 ~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 71 TAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred EEEccCCeEEEEEEEEEEe
Confidence 9986555555567777765
No 199
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=99.14 E-value=3.6e-10 Score=81.76 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=68.7
Q ss_pred eeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCcccccccc-ccCCceeEE----eccceeeecCCCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLP-ISTGSSLII----RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i 100 (386)
++..+....+.+|++|.|.|... ......+.|++.........+. ......... ..+++.+..+....+++|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44456677799999999999998 4455679999965532222221 111111111 13355556666678899999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+++.+|+|.|.|.+...........+.|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999998663344444555544
No 200
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.14 E-value=5.6e-10 Score=76.14 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=55.8
Q ss_pred EEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 145 LVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+|+...|.|...+ +|.+.+.|+|++..+.........+..|.|.++..+|+|.|+|.+.|..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 45778999999997643 256799999999988765544446788999999999999999999998765
No 201
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.13 E-value=1.4e-10 Score=78.81 Aligned_cols=74 Identities=16% Similarity=0.341 Sum_probs=56.0
Q ss_pred cccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+.+|+.+.|.|.. .|.|++.+.|++++....+....+..+. ..++.|.|.+++.+|+|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~-------~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS-------QTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe-------CCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 3557789999999986 6889999999999865322222222111 1367899999999999999999999875
Q ss_pred ce
Q psy8823 313 TS 314 (386)
Q Consensus 313 ~~ 314 (386)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 54
No 202
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.13 E-value=5.6e-10 Score=75.74 Aligned_cols=69 Identities=28% Similarity=0.465 Sum_probs=56.0
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+....+.+|++++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 45567889999999999864 678899999998764322 2233568999999999999999999998876
No 203
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=99.13 E-value=5.6e-10 Score=80.04 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=60.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCC-ccccccccccCCceeEEec----cceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDR-NKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
+....+.+|++++|.|.+...+ ...|.|++... ......+............ +|+.+..+...++++|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556689999999999987433 23599986421 1111122222121111122 2333334555678899999
Q ss_pred ccCCCCCeEEEEEeEEcccc-eeeeEEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGINN-KISAEVDLQ 130 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~ 130 (386)
+++.+|+|.|+|.+.+.... .....+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999999875442 223444443
No 204
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.12 E-value=3.5e-10 Score=77.16 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=57.1
Q ss_pred cccCCCcEEEEEEEEe-----cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 236 GQALQYDMDLECHVEA-----YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+.+|+.+.|.|...+ +|.|.+.|++++.. +........ ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~--i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL--LEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEE--CCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEec
Confidence 4567889999998643 25679999999987 433322111 3678999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.+.....+...+
T Consensus 75 ~~~~~~~~t~t~ 86 (92)
T cd05757 75 HNGKQYNVTRTI 86 (92)
T ss_pred CCCEEEEEEEEE
Confidence 887766554443
No 205
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.12 E-value=1.1e-09 Score=74.43 Aligned_cols=76 Identities=26% Similarity=0.519 Sum_probs=59.3
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+..|+.+.|.|.+.+.|.+.+.|++++..+....... .....|.|.++..+|.|.|.|.+.|..+. ...++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEE
Confidence 346689999999999999999999999988765432221 12347999999999999999999998876 455555
Q ss_pred EE
Q psy8823 220 VE 221 (386)
Q Consensus 220 l~ 221 (386)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 54
No 206
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.12 E-value=6.9e-10 Score=79.34 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=57.3
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE----eccceeeecCCCcceEEEEEcccCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII----RDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.|....+.+|++|+|.|.+.+ +...+.|||.........+.......... ..+++...... ...++|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence 455667899999999999986 56679999976543222222211111111 13455544332 2567999999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+.+
T Consensus 82 ~Dsg~Y~Ca~~~ 93 (110)
T cd05899 82 EDSAVYLCASSL 93 (110)
T ss_pred hhCEEEEEEeeC
Confidence 999999999864
No 207
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.11 E-value=2.4e-10 Score=77.91 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=54.2
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEe-------eee---ecCceeeeEEEEeecccCCCeEEEE
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS-------HFA---TADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
.+.+|+.|+|.|.+.+.+.+.+.|++++.............. .+. .........|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 356799999999999888899999987644322211111000 000 0112235679999999999999999
Q ss_pred EEEcCCCce
Q psy8823 306 RAANKLGTS 314 (386)
Q Consensus 306 ~a~n~~g~~ 314 (386)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999987654
No 208
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.10 E-value=1.2e-09 Score=77.15 Aligned_cols=93 Identities=23% Similarity=0.431 Sum_probs=56.7
Q ss_pred cCCcEEEEEEEeeCC------------CCcEEEEecCCccccccccccCCceeEEe---ccceeeec-CCCcceEEEEEc
Q psy8823 38 IGGTVELKCSVQYAQ------------DYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRY-DTASSTYTLLVK 101 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~L~i~ 101 (386)
.|++|+|+|.+.... ...|.|+|.........+.... ...... .+|+.+.. ....++++|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~-~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATE-GKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEEC-CeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 489999999997432 3579999964322111111122 222111 12444432 224578899999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.+.. ...+..+.|.|.
T Consensus 80 nl~~sDsG~Y~C~V~~g~-~~~~~~v~l~v~ 109 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGI-EDNYDTVEVQVK 109 (112)
T ss_pred ecccccCEEEEEEEecCC-CCceeEEEEEEE
Confidence 999999999999998442 333555555553
No 209
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.10 E-value=8.1e-10 Score=78.40 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=57.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+...|....+.+|++|+|.|.+.+.. ...+.|||.........+.............++... .......|.|.+++.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCCh
Confidence 34456667799999999999987554 566999997643322222211111111112344443 234567899999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+.+
T Consensus 81 ~Dsg~Y~Ca~~~ 92 (106)
T cd04980 81 EDAAVYYCQQYG 92 (106)
T ss_pred HHCEEEEEEEeC
Confidence 999999998753
No 210
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.09 E-value=1.1e-09 Score=73.48 Aligned_cols=78 Identities=23% Similarity=0.529 Sum_probs=57.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+ ..+..|+.+.|.|.+.+.|.+.+.|++++.. +... ...+.+.++..+|.|.|+|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~--~~~~---------------~~~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSP--INSS---------------QNGLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEE--EEEE---------------SSEEEESSEEGGGTEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeee--eeee---------------eeeeeeeeeccccCEEEEE
Confidence 4444333 4577899999999999998899999998866 3211 1116778899999999999
Q ss_pred EEEcCCC-ceeeEEEEEE
Q psy8823 306 RAANKLG-TSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g-~~~~~~~l~v 322 (386)
.|.|..+ ..+.++.|.|
T Consensus 63 ~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 63 RASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCCeEeeeEEeeC
Confidence 9999664 4445666554
No 211
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.08 E-value=6.4e-10 Score=79.07 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=56.7
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccc-cCCce--eEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPI-STGSS--LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
.+.+|++|+|.|.+... +...+.|++.........+.. ..... .....+++....+...+..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46799999999999865 566799999765321111111 11110 112234555554444478899999999999999
Q ss_pred EEEEeEEcc
Q psy8823 111 YRCQVIIGI 119 (386)
Q Consensus 111 Y~C~~~~~~ 119 (386)
|.|.+.+..
T Consensus 82 Y~C~v~~~~ 90 (105)
T cd00099 82 YYCAVSLSG 90 (105)
T ss_pred EEEEEecCC
Confidence 999997543
No 212
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.08 E-value=1.6e-09 Score=72.79 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=58.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.+...+ ..+.+|++++|.|.+.+.+...+.|++++..+. ... . .|.|.+++
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~--------------~~~----------~--~~~~~~~~ 53 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN--------------SSQ----------N--GLFIPNVS 53 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE--------------EES----------S--EEEESSEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee--------------eee----------e--eeeeeeec
Confidence 4455443 558899999999999988788899999764321 000 0 27778999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.+.+..+...+..+.|.|
T Consensus 54 ~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 54 PEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp GGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 999999999999866666677777765
No 213
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=99.08 E-value=1.9e-09 Score=77.75 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=57.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccc-ccc-ccCCceeEEec----cceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTE-PLP-ISTGSSLIIRD----SRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~-~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i 100 (386)
|....+.+|++|+|.|.+.... ...+.|++........ .+. ...+....... .|+.+..+...++++|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999987432 2459998855322111 111 11111111112 344445555567789999
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999987544
No 214
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.08 E-value=1.5e-09 Score=77.09 Aligned_cols=93 Identities=24% Similarity=0.481 Sum_probs=57.8
Q ss_pred cCCcEEEEEEEeeCC------CCcEEEEecCCcc-ccccccccCCceeEEeccce--eeec-CCCcceEEEEEcccCCCC
Q psy8823 38 IGGTVELKCSVQYAQ------DYPVIWMKVDRNK-VTEPLPISTGSSLIIRDSRF--AIRY-DTASSTYTLLVKDIQETD 107 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~L~i~~~~~~d 107 (386)
.|++|+|+|.+...+ ...|.|++..... .........+..... ..++ +... ....++.+|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKV-YGSGRVRVPLYPADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEE-cCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence 489999999987542 4569999974211 111122222222111 1222 2221 235578899999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|+|.+.+. ....+..+.|.|.
T Consensus 80 ~G~Y~C~v~~~-~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDG-IEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcC-CCceEEEEEEEEE
Confidence 99999999865 3344667777664
No 215
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.07 E-value=1.4e-09 Score=78.52 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=59.9
Q ss_pred eeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
...+....+.+|++|+|.|..... ....+.|||.........+...........++|+....+.....++|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 344566778999999999998753 4456999996543221111111111111224566665545566789999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999874
No 216
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.07 E-value=9.8e-10 Score=69.87 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=49.7
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+|+.+.|.|.+.+.|.+.+.|++++.. +.. .... ......|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~~--~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKP--LPE--SNRL-------SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEE--CCC--CCEE-------ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998898899999998876 321 1110 11356899999999999999999999865
No 217
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.06 E-value=8.6e-10 Score=73.01 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=47.1
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCc----eE----EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGG----SI----YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ .|.+.+.|++++..+..... .. .....|.|.++..+|+|.|+|.+.|..+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 469999864 67789999999988753321 11 12467999999999999999999998886
No 218
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.06 E-value=1.1e-09 Score=69.79 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=43.9
Q ss_pred CCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 39 G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
|++++|.|.+ ...+...+.|++++....... ..............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS--------------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE--------------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc--------------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667778899999887652211 11111111111115999999999999999985
No 219
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.06 E-value=1.2e-09 Score=71.35 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=49.6
Q ss_pred EEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.|+|... |+|++.++|++++.. +..... ...........+.|.+.....+|++.|+|+|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~--l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKE--LKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEE--CCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999975 688889999999998 433211 11111122356789999999999999999999998754
No 220
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.06 E-value=2.6e-09 Score=75.84 Aligned_cols=93 Identities=22% Similarity=0.411 Sum_probs=57.9
Q ss_pred cCCcEEEEEEEeeCC----------CCcEEEEecCCccccccccccCCceeEE---eccceeeec-CCCcceEEEEEccc
Q psy8823 38 IGGTVELKCSVQYAQ----------DYPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRY-DTASSTYTLLVKDI 103 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~L~i~~~ 103 (386)
.|++|+|+|.+...+ ...|.|+|............. +..... ..+|+.+.. ....++++|.|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~-~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQ-DGVVKVGQEYQGRVSLPNYPENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEE-CCEEEecccccCeEEeccCCCCCCcEEEEECCC
Confidence 389999999997543 255999997432221112122 222111 123444322 23457789999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+.+|+|.|.|.+.+.. ......+.|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~-~~~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGI-EDEQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCC-CcceEEEEEEEE
Confidence 9999999999998643 344566666664
No 221
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.06 E-value=1.1e-09 Score=69.70 Aligned_cols=62 Identities=40% Similarity=0.729 Sum_probs=50.7
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+|+.++|.|.+.+.+.+.+.|++++..+............|.|.++...|+|.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 47899999998888888999999988776222223345689999999999999999998864
No 222
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.06 E-value=8.1e-10 Score=75.05 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=55.7
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC--CCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL--PTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.....+.+|+.+.|.|.. .|.|.+.+.|++++.... ...+... ..+.|.|.+++.+|+|.|+|.|.|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 345668899999999977 788999999999987542 1222222 3578999999999999999999997654
No 223
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=99.05 E-value=4.1e-09 Score=79.00 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=65.0
Q ss_pred eeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEec--cceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 34 QIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD--SRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..|.+|++|+|.|... +.....++|+|...... .+...+.....+ +|+.+ ......+.+|.|.+++.+|+|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia----tY~~~g~~i~~~Fk~Rve~-mS~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA----GYGPCGPVIVDKFKNKIEY-LSKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE----EEecCCcEEChhhcCeEEE-eccCCCcceEEEEeCChhhCeE
Confidence 3488999999999985 44567799999754332 222222222221 23332 2334455699999999999999
Q ss_pred EEEEeEEcccc-eeeeEEEEEEecCC
Q psy8823 111 YRCQVIIGINN-KISAEVDLQVRRPP 135 (386)
Q Consensus 111 Y~C~~~~~~~~-~~~~~~~l~v~~~p 135 (386)
|+|.+..-..+ ..+....|.|..+.
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEchh
Confidence 99998764444 67788888887654
No 224
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=99.05 E-value=4.1e-09 Score=72.71 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=58.5
Q ss_pred cEEEEEEEeeC-CC---CcEEEEecCCccccccccccCCceeE---EeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 41 TVELKCSVQYA-QD---YPVIWMKVDRNKVTEPLPISTGSSLI---IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 41 ~v~L~C~~~~~-~~---~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+|+|+|.+... +. .+|+|.+...........+....... ...+|..+. +...++++|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence 68999999842 21 25999886432222222222211111 123455544 344577899999999999999999
Q ss_pred EeEEcccceeeeEEEEEEe
Q psy8823 114 QVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~ 132 (386)
.+.+...+..+..+.|.|+
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9998555667888888774
No 225
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.05 E-value=5.5e-09 Score=71.66 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeec--CCCcceEEEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY--DTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i 100 (386)
||.| .......+.+|+.+.|.|.+.+.|.+ .|.|.+.+..+... .+++|.+.. ........|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~------------~~~r~~I~~~~~~~g~~S~L~I 68 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESG------------TSERYTVERTSTGSGVLSTLTI 68 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCC------------CCCCEEEEEEccCCCcEEEEEE
Confidence 5666 44566778999999999999656654 57888876533110 123443322 22345568999
Q ss_pred cccCCCC-CeEEEEEeEEcccce
Q psy8823 101 KDIQETD-AGYYRCQVIIGINNK 122 (386)
Q Consensus 101 ~~~~~~d-~G~Y~C~~~~~~~~~ 122 (386)
.++...| .|.|.|.+.|..+..
T Consensus 69 ~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 69 NNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred CCCccccCCcEEEEEEEeCCccc
Confidence 9998767 799999999877654
No 226
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.04 E-value=4.1e-09 Score=71.94 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=55.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e----CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I----LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
.+...+|+++.|.|.. +.|.+.+.|++.+.. . ............|.|.++..+|+|.|+|.+.+.........
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4567789999999996 478889999985421 1 11122333456799999999999999999985433334446
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 666664
No 227
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=99.04 E-value=1.5e-09 Score=75.81 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=58.2
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
.+.+|++|+|.|..... ....+.|+|.........+. ..+.......+++.+..+...+.++|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 47899999999998642 44568999977554322222 22222223356666665666788899999999999999999
Q ss_pred EeEEc
Q psy8823 114 QVIIG 118 (386)
Q Consensus 114 ~~~~~ 118 (386)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 88643
No 228
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.04 E-value=3.3e-09 Score=74.08 Aligned_cols=91 Identities=21% Similarity=0.408 Sum_probs=58.6
Q ss_pred cEEEEEEEeeCC---CCcEEEEecCCcccccccc---ccCCceeE-EeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 41 TVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLP---ISTGSSLI-IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 41 ~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+|+|+|...... ...|.|+|.........+. ...+.... ...+|.++..+....+++|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987443 3469999965432211111 11122111 1124555655555678899999999999999999
Q ss_pred EeEEcccceeeeEEEEEE
Q psy8823 114 QVIIGINNKISAEVDLQV 131 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v 131 (386)
.+.+...+..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 998755555577777776
No 229
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.04 E-value=3e-09 Score=73.80 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=56.4
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
...+.+|++++|.|.+.+.+.+.+.|++.+....... ..++... ........|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEEEE
Confidence 4567789999999999888888999986443311111 1122211 11123567999999999999999999
Q ss_pred EcCCCceeeEEEEE
Q psy8823 308 ANKLGTSEKTVELF 321 (386)
Q Consensus 308 ~n~~g~~~~~~~l~ 321 (386)
.+... .++++.|.
T Consensus 82 ~~~~~-~~~~~~~~ 94 (95)
T cd05717 82 YTMPV-QTAKATVT 94 (95)
T ss_pred ecCCC-ceEEEEEE
Confidence 98753 45555554
No 230
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=99.03 E-value=2.8e-09 Score=74.17 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEE---eccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 39 GGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 39 G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
|++|+|+|....... ..|.|+|.................... ..++.... .....+++|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 789999999764432 359999964332111111111111111 11232222 3445678999999999999999999
Q ss_pred eEEcccceeeeEEEEEEe
Q psy8823 115 VIIGINNKISAEVDLQVR 132 (386)
Q Consensus 115 ~~~~~~~~~~~~~~l~v~ 132 (386)
+.....+..+..+.|.|+
T Consensus 80 ~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 80 FNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EEeCCCCCeeeEEEEEEC
Confidence 987666667777888773
No 231
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.03 E-value=2e-09 Score=75.13 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=53.5
Q ss_pred eeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 35 IKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.+.+|++|+|.|.+... ....+.||+.........+............+++.... .....+|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEE
Confidence 46799999999998754 45569999977654332222221111111134555433 336778999999999999999
Q ss_pred EEeEE
Q psy8823 113 CQVII 117 (386)
Q Consensus 113 C~~~~ 117 (386)
|.+.+
T Consensus 80 C~~~~ 84 (98)
T cd04984 80 CQVWD 84 (98)
T ss_pred EEEcc
Confidence 98763
No 232
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.02 E-value=2.4e-09 Score=77.47 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=57.7
Q ss_pred ccceeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccc-cccCCceeEE----eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPL-PISTGSSLII----RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|....+.+|++|+|.|.+.+ .+...+.||+.........+ .......... ...++....+.....++|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45556889999999999876 45667999997543322111 1111111111 23456555444446789999999
Q ss_pred CCCCCeEEEEEeEE
Q psy8823 104 QETDAGYYRCQVII 117 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~ 117 (386)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999998763
No 233
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.02 E-value=4.2e-09 Score=70.84 Aligned_cols=76 Identities=21% Similarity=0.399 Sum_probs=51.0
Q ss_pred cEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eE
Q psy8823 242 DMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KT 317 (386)
Q Consensus 242 ~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~ 317 (386)
.+.|.|.+.| +|.+.++|++++.. +..... ....... ......+.|.+.....+|.|.|+|.|.|...... .+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~--l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s 77 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEV--LDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETS 77 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEE--ccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEE
Confidence 3689999987 68889999999987 433221 1111111 1122456788888888899999999999875443 44
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 78 ~~l 80 (82)
T cd05759 78 VTL 80 (82)
T ss_pred EEE
Confidence 444
No 234
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.01 E-value=3.7e-09 Score=67.42 Aligned_cols=63 Identities=17% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 240 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
|+.++|.|.+ .+.+...+.|++++..... ...... ..........|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE--GSTTNR---STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE--EEEEEE---EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC--cceeEe---ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 6667779999999876222 111111 1111112225999999999999999986
No 235
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=99.01 E-value=2.4e-09 Score=74.91 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=55.0
Q ss_pred CcEEEEEEEeeCC---CCcEEEEecCCccccccccccC-CceeEEe--ccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 40 GTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPIST-GSSLIIR--DSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 40 ~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
++|+|.|.+.... ...|.|+|.............. ....... ..|..+... ..++.+|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEE
Confidence 5799999988544 3469999976542111111111 0111111 223222222 1267799999999999999999
Q ss_pred EeEEcccceeeeEEEEEE
Q psy8823 114 QVIIGINNKISAEVDLQV 131 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v 131 (386)
.+.....+.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 987655555677777766
No 236
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.01 E-value=3.8e-09 Score=75.00 Aligned_cols=93 Identities=29% Similarity=0.514 Sum_probs=57.6
Q ss_pred cCCcEEEEEEEeeCC------CCcEEEEecCCccccc-cccccCCceeEE---eccceeeecCCCcceEEEEEcccCCCC
Q psy8823 38 IGGTVELKCSVQYAQ------DYPVIWMKVDRNKVTE-PLPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
.|++|+|+|.+...+ ...|.|+|........ ......+..... ..+|+.+.. ...++.+|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 489999999987542 3459999976332111 111222211111 123444422 23457799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|+|.+.+. .+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~-~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDG-LEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEec-ccceEEEEEEEEE
Confidence 99999999764 3345666766664
No 237
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.00 E-value=4e-09 Score=68.99 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=48.6
Q ss_pred EEEEEEe-eeeCCCeEEEEEcCeeeCCCC------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFA-GGHPTPRISWRRENNAILPTG------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~-~~~~~~~v~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|+|.. .+.|++.++||+++..+.... ......+.|.+.....+|++.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 6899998 678999999999999885432 11234567999999999999999999998765
No 238
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=99.00 E-value=5e-09 Score=75.85 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccceeeecCCcEEEEEEEeeCC------CCcEEEEecCCcccc-ccccccCCce--eEEeccceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ------DYPVIWMKVDRNKVT-EPLPISTGSS--LIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|+...+.+|++|+|+|.+.... ...+.||+....... .......... .....+|+....+...++++|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556789999999999876332 244899997654211 1111111111 111234666665677888999999
Q ss_pred ccCCCCCeEEEEEeEE
Q psy8823 102 DIQETDAGYYRCQVII 117 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~ 117 (386)
+++.+|+|.|.|.+..
T Consensus 86 ~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 86 DAQPEDSGKYFFRVEL 101 (119)
T ss_pred cCChhhCeEEEEEEEc
Confidence 9999999999998864
No 239
>smart00409 IG Immunoglobulin.
Probab=99.00 E-value=1.1e-08 Score=69.55 Aligned_cols=81 Identities=25% Similarity=0.532 Sum_probs=61.6
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..+..|+++.|.|.+.+.+.+.+.|+++ +.. +....+....... ....|.|.++..+|+|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKL--LAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEE--cCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4456899999999998887889999998 555 3323333322111 1568999999999999999999999888
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 877777665
No 240
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.00 E-value=1.1e-08 Score=69.55 Aligned_cols=81 Identities=25% Similarity=0.532 Sum_probs=61.6
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..+..|+++.|.|.+.+.+.+.+.|+++ +.. +....+....... ....|.|.++..+|+|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKL--LAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEE--cCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4456899999999998887889999998 555 3323333322111 1568999999999999999999999888
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 877777665
No 241
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.00 E-value=3.5e-09 Score=72.58 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.+...|. .+|.+|++|+|.|... .+...+.|++++...... ........+.|.|.++
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------~~~~~~~~~~f~i~~v 60 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------KPPEPQNKAKFFIPSM 60 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------ccCCCceeEEEEccCC
Confidence 466777654 4688999999999875 556679999988643110 0011233458999999
Q ss_pred CCCCCeEEEEEeEEcc--cceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGI--NNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v 131 (386)
+.+|+|.|+|+..+.. ....+..+.|.|
T Consensus 61 ~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 61 KREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 9999999999987642 123344455544
No 242
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.99 E-value=5.4e-09 Score=73.36 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=55.1
Q ss_pred CCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCcee-----EEeccceeeec-CCCcceEEEEEcccCCCCCe
Q psy8823 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSL-----IIRDSRFAIRY-DTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 39 G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G 109 (386)
|++|+|+|.+.... ...+.|++..... .......+... ....+|+.+.. ....++.+|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~--~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSP--AVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCce--eEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE
Confidence 78999999986332 2358999965321 11111111111 01123444432 23456789999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEE
Q psy8823 110 YYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.|+|.+.+..+. ....+.|.|
T Consensus 79 ~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEecCCcE-EEEEEEEEE
Confidence 999999875443 566666655
No 243
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.97 E-value=1.3e-08 Score=69.21 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+++.|.|.+.+.+...+.|+++ +..+. .+.++....... ..+|.|.+++..|+|.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------------~~~~~~~~~~~~--~~~l~i~~~~~~d~G~ 65 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------------ESGRFSVSRSGS--NSTLTISNVTPEDSGT 65 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------------CCCcEEEEEcCC--eeEEEEEeeccccCeE
Confidence 345678999999999999777788999997 43221 122222222211 4589999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|.+.+..+.... .+.|.|
T Consensus 66 Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00410 66 YTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred EEEEEEcCCCeEEE-EEEEEE
Confidence 99999865444433 355554
No 244
>smart00409 IG Immunoglobulin.
Probab=98.97 E-value=1.3e-08 Score=69.21 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+++.|.|.+.+.+...+.|+++ +..+. .+.++....... ..+|.|.+++..|+|.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------------~~~~~~~~~~~~--~~~l~i~~~~~~d~G~ 65 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------------ESGRFSVSRSGS--NSTLTISNVTPEDSGT 65 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------------CCCcEEEEEcCC--eeEEEEEeeccccCeE
Confidence 345678999999999999777788999997 43221 122222222211 4589999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|.+.+..+.... .+.|.|
T Consensus 66 Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00409 66 YTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred EEEEEEcCCCeEEE-EEEEEE
Confidence 99999865444433 355554
No 245
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.96 E-value=1e-08 Score=70.06 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=57.9
Q ss_pred CcEEEEEEEeeC-CCCcEEEEecCCccccccccccC--Ccee-EEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 40 GTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPIST--GSSL-IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 40 ~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
++|+|+|..... ....|+|.|.............. +... ....+|..+. +....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 478999998743 33469999865322111111111 1100 1112344443 34556789999999999999999999
Q ss_pred EEcccceeeeEEEEEE
Q psy8823 116 IIGINNKISAEVDLQV 131 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v 131 (386)
.....+..++.+.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 8777777777777776
No 246
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=8.3e-09 Score=70.34 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=49.2
Q ss_pred cceeeecCCcEEEEEEEe-----------eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 32 QEQIKDIGGTVELKCSVQ-----------YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~-----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
....+.+|+.+.|.|... ......+.|||++......... ...+.|.+... ..|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~-------~~~~~Ri~~~~------~~Lwf 74 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEI-------IFDGVRMSKEE------DSIWF 74 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcc-------cccceeEEEeC------CEEEE
Confidence 345688999999999962 1223469999987443221110 00112333322 28999
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
.++..+|+|.|+|++.|..
T Consensus 75 ~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 75 RPAELQDSGLYTCVLRNST 93 (104)
T ss_pred EeCChhhCeEEEEEECCCC
Confidence 9999999999999998653
No 247
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=3.8e-09 Score=71.66 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=52.9
Q ss_pred cceeeecCCcEEEEEE-EeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe-
Q psy8823 32 QEQIKDIGGTVELKCS-VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG- 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G- 109 (386)
+...+.+|+.+.|.|. ..+.|.+.|.|++++... ...+.|+.... +++|.|.+++.+|+|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-------------i~~~~Ri~~~~-----~GnL~fs~v~~~D~g~ 72 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-------------ITQDERVSMGQ-----NGNLYFANVEEQDSHP 72 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-------------ccccccEEECC-----CceEEEEEEehhhCCC
Confidence 4566899999999997 578899999999765321 11234444432 348999999999999
Q ss_pred EEEEEeEEcc
Q psy8823 110 YYRCQVIIGI 119 (386)
Q Consensus 110 ~Y~C~~~~~~ 119 (386)
.|.|.|.+..
T Consensus 73 ~Y~C~a~~~~ 82 (95)
T cd05845 73 DYICHAHFPG 82 (95)
T ss_pred CeEEEEEccc
Confidence 8999998754
No 248
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.92 E-value=4.4e-09 Score=71.33 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=58.3
Q ss_pred ecCCCceEEEeCCccEEEEEE-eeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCe-EEEEEEecCCCC
Q psy8823 138 SDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRG-TYYCVAENGVGK 212 (386)
Q Consensus 138 ~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 212 (386)
.......+.+.+|+.+.|.|. ..|.|.+.+.|++++........+.. ..+.|.|.++..+|.| .|.|.|.|....
T Consensus 6 ~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 6 PKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred CccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 334456678999999999997 58999999999987655433333222 3578999999999999 899999987544
No 249
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.91 E-value=6.3e-09 Score=68.81 Aligned_cols=74 Identities=26% Similarity=0.587 Sum_probs=49.2
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +.... ... .........+.|.|.++..+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~--------~~~~~~~~~~~L~i~~v~~~~~g~y 69 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNS--------NSRGSSSSNSTLTISNVTRSDNGTY 69 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEE--------EEEEEEEEEEEEEESSCCGGGTEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eee--------eeeeccceeeEEEEccCCHHhCcEE
Confidence 35555555444444444 99999999887 6699999 11110 000 1111123578899999999999999
Q ss_pred EEEEEc
Q psy8823 304 ICRAAN 309 (386)
Q Consensus 304 ~C~a~n 309 (386)
+|.|+|
T Consensus 70 ~C~a~N 75 (75)
T PF13927_consen 70 TCIASN 75 (75)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999987
No 250
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.90 E-value=1.3e-08 Score=67.67 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.+|+++.|.|...+. .+.+.|++++..+............|.|.+++.+|+|.|.|.+.-..-...-..+.+.|
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 34578899999999998764 66999999999886654555556668899999999999999997443332333444443
No 251
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.90 E-value=2.5e-08 Score=70.21 Aligned_cols=94 Identities=21% Similarity=0.437 Sum_probs=58.0
Q ss_pred cCCcEEEEEEEeeCC-------CCcEEEEecCC--ccccccccccCCceeE---Eeccceeeec-CCCcceEEEEEcccC
Q psy8823 38 IGGTVELKCSVQYAQ-------DYPVIWMKVDR--NKVTEPLPISTGSSLI---IRDSRFAIRY-DTASSTYTLLVKDIQ 104 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~-------~~~v~W~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~L~i~~~~ 104 (386)
.|++|+|+|.+...| .+.|.|++... ...........+.... ...+|..+.. ....++.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999977332 35699998632 1111111222222211 1223444433 234578899999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.+|+|.|+|.+.... ...+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 999999999998643 444666677664
No 252
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.90 E-value=2.5e-08 Score=70.74 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=58.9
Q ss_pred CCCcEEEEEEEEecC------CCeeEEEeCC-----ee-eeeecCceeEE------eeeeecCceeeeEEEEeecccCCC
Q psy8823 239 LQYDMDLECHVEAYP------PPAIVWIKED-----TQ-QVLTNNQHYSI------SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------~~~~~W~~~~-----~~-~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.|++|+|.|.....+ ...+.|++.. .. +.......... ............+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999987653 3489999873 11 11111111111 001011123578999999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988889999998875
No 253
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.89 E-value=1e-08 Score=69.84 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=53.0
Q ss_pred eeeecCCcEEEEEEEe-----eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQ-----YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+.+.+|.+..|.|.-. ....+.++|||++..+.. .+.++.... +...|.|.+++.+|+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-------------~~~~~~~~~----~~~~L~I~~v~~~D~ 67 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-------------DNEKFYSLK----GSTYLHIIDVSLNDS 67 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-------------CCcceEecC----CCCEEEEEEcChhhC
Confidence 4577899999999731 235568999999865421 111111100 112699999999999
Q ss_pred eEEEEEeEEcccce---eeeEEEEEE
Q psy8823 109 GYYRCQVIIGINNK---ISAEVDLQV 131 (386)
Q Consensus 109 G~Y~C~~~~~~~~~---~~~~~~l~v 131 (386)
|.|+|++.+..++. .++.+.|.|
T Consensus 68 G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 68 GYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 99999999865443 344445544
No 254
>PHA03376 BARF1; Provisional
Probab=98.87 E-value=6.4e-08 Score=72.19 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=73.3
Q ss_pred eEEEeCCccEEEEEEeee---eCCCeEEEEEcCe----eeCCC-------------CceE----EeeeEEEECCCCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG---HPTPRISWRRENN----AILPT-------------GGSI----YRGSILKIPQITKEDR 199 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~----~~~~~-------------~~~~----~~~~~l~i~~~~~~d~ 199 (386)
.+.+..|+.+.|+|.... .....|+|+|.+. ..... .... .++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 445678999999998742 2345799999432 11100 0000 1245799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ 265 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~ 265 (386)
|+|+|.+...... ..+.-.+.+..+-.+.+.........-+..++.|.+-|+|.|.+.|..+...
T Consensus 100 GtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 9999999875433 2121222221111122221111122245678999988899999999977654
No 255
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=1.9e-08 Score=66.83 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|+++.|+|...+ ..+.+.|++++..+. .+.++....+ .|.|.+++..|+|.|.
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~--------------~~~r~~~~~~------GLlI~~~~~~dsG~Y~ 63 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLN--------------AQFSYRVGTD------GLLILVTSPEHSGTYR 63 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccC--------------CCcceEEeCC------CCEEEECCHhhCEEEE
Confidence 456889999999999874 466899999987641 1223333222 4889999999999999
Q ss_pred EEeEEcccceeeeEEEEEE
Q psy8823 113 CQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v 131 (386)
|.+.-..-......+.|.|
T Consensus 64 C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 64 CYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred EEEecCCCeEEEEEEEEEE
Confidence 9976332223334445544
No 256
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.86 E-value=2.3e-08 Score=68.18 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=51.8
Q ss_pred eEEEeCCccEEEEEEe-e----------eeCCCeEEEEEcCeeeCCCC-------ceEEeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFA-G----------GHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~-~----------~~~~~~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
...+.+|+.+.|.|.. . ......+.|+|++....... +....+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 4568899999999985 1 11234799999975543322 3344578899999999999999999
Q ss_pred EecCCCC
Q psy8823 206 AENGVGK 212 (386)
Q Consensus 206 ~~~~~~~ 212 (386)
+.|....
T Consensus 89 ~rN~t~C 95 (104)
T cd05896 89 LRNSTYC 95 (104)
T ss_pred ECCCCcc
Confidence 9987654
No 257
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.86 E-value=2.5e-08 Score=67.37 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=52.2
Q ss_pred CccEEEEEEeeeeC--CCeEEEEEcCeeeCCC---C-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 150 GQPVQLECFAGGHP--TPRISWRRENNAILPT---G-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 150 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~---~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
|+++.|.|.+.+.+ ...+.|...++..... . ......+.|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMI-AKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceE-eccc
Confidence 78899999997755 4578998877543211 1 01123568999999999999999999997765 4455
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 555554
No 258
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.86 E-value=1e-07 Score=64.91 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=62.7
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCc--eEE-------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGG--SIY-------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+.+|+.+.|.|.++++|+|. +.|.+++..+..... ... -.+.|.+.+++.+|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456799999999999999999997 999998775432222 111 2367999999999999999999998877
Q ss_pred ceeeeEEEEEE
Q psy8823 213 GTRRNIAVEVE 223 (386)
Q Consensus 213 ~~~~~~~l~v~ 223 (386)
.+..+.|.|.
T Consensus 91 -~s~tF~l~v~ 100 (101)
T cd05860 91 -ASVTFNVYVN 100 (101)
T ss_pred -EEEEEEEEEe
Confidence 5566666653
No 259
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.86 E-value=5.8e-08 Score=68.39 Aligned_cols=93 Identities=23% Similarity=0.460 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeeCC-----------CCcEEEEecC-----CccccccccccCCceeEEe---ccceeeec-CCCcceEEE
Q psy8823 39 GGTVELKCSVQYAQ-----------DYPVIWMKVD-----RNKVTEPLPISTGSSLIIR---DSRFAIRY-DTASSTYTL 98 (386)
Q Consensus 39 G~~v~L~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~L 98 (386)
|++|+|+|.+...| ...|.|++-. ............+...... .+|..+.. ....++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999998433 2359999852 1111122222222222211 22333322 234578899
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.|.+++.+|+|.|+|++.+.. ......+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~-~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGI-EDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECC-cccEEEEEEEEE
Confidence 999999999999999998653 334566666654
No 260
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.84 E-value=3.4e-08 Score=70.04 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=53.2
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCcccccc----ccccCCceeE----EeccceeeecCCCcceEEEEEcccCC
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEP----LPISTGSSLI----IRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+.+|++|+|.|..... ....+.||+......... .......... ...+++..........+.|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47899999999998653 345699999766421111 1111111111 11345655444455677899999999
Q ss_pred CCCeEEEEEeE
Q psy8823 106 TDAGYYRCQVI 116 (386)
Q Consensus 106 ~d~G~Y~C~~~ 116 (386)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999864
No 261
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.81 E-value=1.2e-08 Score=69.48 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.7
Q ss_pred cccCCCcEEEEEE-EEe----cCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 236 GQALQYDMDLECH-VEA----YPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 236 ~~~~g~~~~l~C~-~~g----~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+..|.+..|.|. .++ ++.+.+.|+|++.. +.... ++... .....|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~--l~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVL--LDKDNEKFYSL-------KGSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEE--CcCCCcceEec-------CCCCEEEEEEcChhhCEEEEEEEEE
Confidence 3456788999997 233 35668999999987 43222 11110 0235699999999999999999999
Q ss_pred CCCcee
Q psy8823 310 KLGTSE 315 (386)
Q Consensus 310 ~~g~~~ 315 (386)
..|...
T Consensus 77 ~~~g~~ 82 (95)
T cd05897 77 THEGKK 82 (95)
T ss_pred eeCCEE
Confidence 987654
No 262
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.81 E-value=7.7e-08 Score=63.16 Aligned_cols=72 Identities=19% Similarity=0.351 Sum_probs=53.9
Q ss_pred EEEEEEee-eeCCCeEEEEEcCeeeCCCCc-------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 153 VQLECFAG-GHPTPRISWRRENNAILPTGG-------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 153 v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
++|.|.+. +.|.+.|+|++++..+..... .....+.|.|..-..+|+..|+|++.|..-........|.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 68999985 568889999999988765322 1223567888777777777999999997765566777888776
No 263
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.80 E-value=5.1e-08 Score=67.08 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=49.9
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.+... +..+|.+|++|+|.|.... ....+.|+|++....... .. ........+.+.|.+++
T Consensus 2 P~l~a~-p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-----------~~-----~~~~~~~~a~f~I~~~~ 63 (94)
T cd05711 2 PFLSAH-PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH-----------LY-----EKHHGGFQASFPLGPVT 63 (94)
T ss_pred CEEEec-CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee-----------cc-----cccCCeEEEEEEecCCC
Confidence 455554 3556889999999998764 456699999886531100 00 00011234479999999
Q ss_pred CCCCeEEEEEeE
Q psy8823 105 ETDAGYYRCQVI 116 (386)
Q Consensus 105 ~~d~G~Y~C~~~ 116 (386)
.+|+|.|+|...
T Consensus 64 ~~~~G~Y~C~~~ 75 (94)
T cd05711 64 PAHAGTYRCYGS 75 (94)
T ss_pred cccCEEEEEEEE
Confidence 999999999875
No 264
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.80 E-value=1.3e-07 Score=67.08 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCcEEEEEEEEecC------CCeeEEEeCCee-----e-eeecCceeEE------eeeeecCceeeeEEEEeecccCCC
Q psy8823 239 LQYDMDLECHVEAYP------PPAIVWIKEDTQ-----Q-VLTNNQHYSI------SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------~~~~~W~~~~~~-----~-~~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.|++++|.|.....| ...+.|++.... . .......... ............+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999987653 236999986421 1 1111110000 000001112356899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999998875
No 265
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.77 E-value=5e-08 Score=66.83 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=53.1
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+ ...+..|+.|+|.|... .+...+.|+++|........ ........|.|.+++.+|+|.|+|
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~----------~~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP----------PEPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc----------CCCceeEEEEccCCChhHCEEEEE
Confidence 4455443 45678999999999884 55668999999875221100 011246779999999999999999
Q ss_pred EEEcC
Q psy8823 306 RAANK 310 (386)
Q Consensus 306 ~a~n~ 310 (386)
.+.|.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 99987
No 266
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.77 E-value=1.3e-07 Score=64.61 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=53.1
Q ss_pred CcEEEEEEEeeC-CCCcEEEEecCCccccccccccC--Ccee-EEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 40 GTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPIST--GSSL-IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 40 ~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
+.++|.|..... ...+|+|.|...........+.. +... ....+|..+.. ....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence 468999998632 34558999975422111222211 2111 01123444432 2236789999999999999999999
Q ss_pred EEcccceeeeEEEE
Q psy8823 116 IIGINNKISAEVDL 129 (386)
Q Consensus 116 ~~~~~~~~~~~~~l 129 (386)
.....+..++.+.+
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 87655555555544
No 267
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=1.8e-07 Score=66.12 Aligned_cols=86 Identities=16% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEecC------------CCeeEEEeCCe--e-eee-ecCceeEEe-eeee-------cCceeeeEEEEee
Q psy8823 239 LQYDMDLECHVEAYP------------PPAIVWIKEDT--Q-QVL-TNNQHYSIS-HFAT-------ADEFTDTTIRVIT 294 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------------~~~~~W~~~~~--~-~~~-~~~~~~~~~-~~~~-------~~~~~~~~L~i~~ 294 (386)
.|++++|.|...... .+.+.|++-.. . ..+ ....+.... .+.. .......+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999986432 34899997421 1 111 111111110 1100 1123578999999
Q ss_pred cccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 295 IEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
++.+|+|.|+|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888999988875
No 268
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.75 E-value=2e-07 Score=66.17 Aligned_cols=86 Identities=17% Similarity=0.350 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEecC----------CCeeEEEeCC--eeee--eecCceeEE-eeeee-------cCceeeeEEEEeecc
Q psy8823 239 LQYDMDLECHVEAYP----------PPAIVWIKED--TQQV--LTNNQHYSI-SHFAT-------ADEFTDTTIRVITIE 296 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p----------~~~~~W~~~~--~~~~--~~~~~~~~~-~~~~~-------~~~~~~~~L~i~~~~ 296 (386)
.|++++|.|.....+ ...+.|++.. .... ......... ..+.. ........|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986544 2469999852 2111 111111110 01110 112346789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999888888999998865
No 269
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.75 E-value=1.2e-07 Score=66.46 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCcEEEEEEEEecCC---CeeEEEeCCeeeee--ecCce---------e--EEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 240 QYDMDLECHVEAYPP---PAIVWIKEDTQQVL--TNNQH---------Y--SISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 240 g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~--~~~~~---------~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
|++++|.|....... ..+.|++......+ ..... + +.............+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999853322 26889886532111 11000 0 00000011112357899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v 322 (386)
+|.+.|..+..++.+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888876
No 270
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.74 E-value=1.5e-07 Score=64.11 Aligned_cols=73 Identities=11% Similarity=0.272 Sum_probs=53.0
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeee------ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVL------TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
....+.+|++++|.|.+.+.....+.|++.+..... ....++..... .....+|.|++++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~----~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF----SSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC----CCCEEEEEECcCCcccCEEEEEE
Confidence 346678999999999998887778899877754321 12333333221 12456799999999999999999
Q ss_pred EEc
Q psy8823 307 AAN 309 (386)
Q Consensus 307 a~n 309 (386)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 975
No 271
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.74 E-value=1.2e-07 Score=63.74 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=49.0
Q ss_pred cEEEEEEeee-eCCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEE
Q psy8823 152 PVQLECFAGG-HPTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAV 220 (386)
Q Consensus 152 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l 220 (386)
.+.|.|.+.| .|.+.++|++++..+..... .....+.|.+.....+|.|.|+|.+.|.... ....+++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999976 68889999999987643211 1112356888888888899999999986543 23445554
Q ss_pred E
Q psy8823 221 E 221 (386)
Q Consensus 221 ~ 221 (386)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
No 272
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.74 E-value=1e-07 Score=68.64 Aligned_cols=87 Identities=25% Similarity=0.344 Sum_probs=56.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-cee---EEeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSL---IIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|....+.+|++|+|.|...... ...+.|||.........+. .... ... ....+++....+.......|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 35566789999999999876433 3559999977543322221 1111 111 111345655544444566899999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 83 ~~~~Dsa~YyCa~~ 96 (117)
T cd04981 83 LTPEDTAVYYCARG 96 (117)
T ss_pred CCHHHCEEEEEEEE
Confidence 99999999999875
No 273
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.73 E-value=6e-08 Score=67.72 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeee-----e-eecCceeEE---eeeeecCceeeeEEEEeecccCCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQ-----V-LTNNQHYSI---SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~-----~-~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
+....+.+|+++.|.|.. .|.. .++|+|..... . ......... .......-..+++|.|.+++.+|+
T Consensus 5 ~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 5 LVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred ccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 334567789999999864 4544 89999964320 0 001100000 000011112457899999999999
Q ss_pred eEEEEEEEcCC-CceeeEEEEEE
Q psy8823 301 GSYICRAANKL-GTSEKTVELFE 322 (386)
Q Consensus 301 G~Y~C~a~n~~-g~~~~~~~l~v 322 (386)
|.|+|.+.+.. ...+..+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999987 45556666643
No 274
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.72 E-value=3.7e-08 Score=65.03 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=50.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|...+.......+. ++|.|.+.+.+ ...+.|+. .. .............+..|.|.+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~------------------~~~~~~~~~~~~~~~~L~i~~ 60 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SN------------------PSFNSNSRGSSSSNSTLTISN 60 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EE------------------EEEEEEEEEEEEEEEEEEESS
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cC------------------CceeeeeeeccceeeEEEEcc
Confidence 46777777776655555 99999998766 77899991 10 000011111122345899999
Q ss_pred cCCCCCeEEEEEeEE
Q psy8823 103 IQETDAGYYRCQVII 117 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~ 117 (386)
+..+|.|.|+|.|.|
T Consensus 61 v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 61 VTRSDNGTYTCIASN 75 (75)
T ss_dssp CCGGGTEEEEEEEEE
T ss_pred CCHHhCcEEEEEEEC
Confidence 999999999999875
No 275
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.71 E-value=2.7e-07 Score=60.58 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=53.1
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc-eeeEEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT-SEKTVEL 320 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l 320 (386)
+.|.|.+.| .|.+.|+|++++.. +...... ...........++|.|..-..+|+..|+|.|.|+.-. .+.+..|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~--l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKE--LTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEE--CcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 689999876 67779999999988 4332111 1122223346788999887888888899999997642 3455666
Q ss_pred EEEe
Q psy8823 321 FESI 324 (386)
Q Consensus 321 ~v~~ 324 (386)
.|.+
T Consensus 78 ~V~y 81 (82)
T cd05883 78 EVQY 81 (82)
T ss_pred EEEE
Confidence 6543
No 276
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.69 E-value=1.1e-07 Score=66.05 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=53.4
Q ss_pred cCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 238 ALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..|+.++|.|.+.|+ |. +.++|++++.. +..... .......+......+.|.+.....++.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~--~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE--LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEE--CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999997 54 48999999988 433332 2222333333445667888877778999999999998764
No 277
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.68 E-value=1e-07 Score=67.01 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=51.4
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCc--ccccccc-ccCC-ceeEE----eccceeeecCCCcceEEEEEcccCCC
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRN--KVTEPLP-ISTG-SSLII----RDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~--~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.+.+|++|+|.|.........+.||+.... .....+. .... ..... ...++.... .....+|.|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 367899999999986554566999997754 2211122 1111 11111 123444322 336778999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 80 DsgtY~Ca~~ 89 (104)
T cd05720 80 NEGYYFCSVA 89 (104)
T ss_pred HCEEEEEEEc
Confidence 9999999865
No 278
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.67 E-value=4.7e-05 Score=64.72 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=101.3
Q ss_pred EEEEEcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWRR 171 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~ 171 (386)
..|.|..++...+|.|+-...+..+ ....+.+.+..+.+|.+..... .+.+|+...-.|.+..+.++ .++|++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 3599999999999999998765443 2334567788888887665443 36789999999999655433 599999
Q ss_pred cCeeeCCCCce----------EEeeeEEEECCCCCCCC-eEEEEEEecCCCC----ceeeeEEEEEEecceEeeCCCccc
Q psy8823 172 ENNAILPTGGS----------IYRGSILKIPQITKEDR-GTYYCVAENGVGK----GTRRNIAVEVEFAPVITVPKPRLG 236 (386)
Q Consensus 172 ~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~ 236 (386)
|+..+...... ....+++++........ =..+|.+.-.... ..+....-.|+.+|.+.+....
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F~d-- 336 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFGG-- 336 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEEeC--
Confidence 99877532211 11234555544332222 2789998543222 1234445566677766654222
Q ss_pred ccCCCcEEEEEEEEecCCC-eeEEEeCCee
Q psy8823 237 QALQYDMDLECHVEAYPPP-AIVWIKEDTQ 265 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~ 265 (386)
-...|.+.--|.- .+.|+.++..
T Consensus 337 ------G~AVCtA~CVPegV~l~W~V~D~~ 360 (466)
T PHA03270 337 ------DEAVCTAACVPEGVTLAWLLGADP 360 (466)
T ss_pred ------CEEEEeccccCCCCEEEEEecCCC
Confidence 2345777655543 8999887755
No 279
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.65 E-value=3.6e-07 Score=65.20 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=50.9
Q ss_pred CcccccCCCcEEEEEEEEecC----CCeeEEEeCCee------eeee-cCceeE--------EeeeeecCceeeeEEEEe
Q psy8823 233 PRLGQALQYDMDLECHVEAYP----PPAIVWIKEDTQ------QVLT-NNQHYS--------ISHFATADEFTDTTIRVI 293 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~------~~~~-~~~~~~--------~~~~~~~~~~~~~~L~i~ 293 (386)
....+..|+.+.|.|...... ...+.|.+.... +... .+..+. ...+.......+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345677899999999986643 237999542210 0001 111110 000111112356789999
Q ss_pred ecccCCCeEEEEEEEcCCCcee
Q psy8823 294 TIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
+++.+|.|.|+|.+.|+-+...
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCC
Confidence 9999999999999999876443
No 280
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.65 E-value=3.1e-07 Score=61.45 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=46.5
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.|.|.+.+ +|.+.++|++++.. +.... ..........+...+.|.+.....++++.|+|.|.|+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~--l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKE--LKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEE--ccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999976 58889999999987 43322 11111111222345567777777778889999999987654
No 281
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.63 E-value=6.6e-07 Score=61.80 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.7
Q ss_pred eeeEEEEeecccCCCeEEEEEEEc-CCCceeeEEEEEE
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 322 (386)
.+++|.|.+++.+|.|.|+|.+.| +.|+.+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 468999999999999999999999 7888888888876
No 282
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.62 E-value=6.3e-07 Score=63.14 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCcEEEEEEEEecC-------CCeeEEEeCC-----eee--eeecCceeE--------EeeeeecCceeeeEEEEeecc
Q psy8823 239 LQYDMDLECHVEAYP-------PPAIVWIKED-----TQQ--VLTNNQHYS--------ISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p-------~~~~~W~~~~-----~~~--~~~~~~~~~--------~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|++++|.|...-.| .+.+.|.+.. ... ......... .............+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999975333 3579998752 111 111111110 101111112257899999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999887888899998864
No 283
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.62 E-value=4.2e-07 Score=63.48 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=52.2
Q ss_pred CcEEEEEEEEecC---CCeeEEEeCCee----eeeec---Cc------eeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 241 YDMDLECHVEAYP---PPAIVWIKEDTQ----QVLTN---NQ------HYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 241 ~~~~l~C~~~g~p---~~~~~W~~~~~~----~~~~~---~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
++|+|.|.....+ ...+.|++.... +.... .. ..+.. +. ........|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~-~~-~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS-FL-NSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE-Ee-CCCCCceEEEEccCCcccCEEEE
Confidence 4689999987654 237999986532 00000 00 00000 00 01114678999999999999999
Q ss_pred EEEEc-CCCceeeEEEEEE
Q psy8823 305 CRAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n-~~g~~~~~~~l~v 322 (386)
|.+.+ +.|..++.+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99875 7788888888876
No 284
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.62 E-value=1.1e-05 Score=69.28 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=107.3
Q ss_pred ceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEccc--ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN--NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 84 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
++.+-.....++..|.|.++...++|.|+-++.+... ......+.+.++.+|.+..... .+.+|+...-.|.+..
T Consensus 277 ~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 277 KYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNK 353 (566)
T ss_pred eEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeee
Confidence 3444344455667899999999999999877654322 2345677788888886665433 3778999999999965
Q ss_pred eCCC---eEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCC--CeEEEEEEecCCCCc----eeeeEEEEE
Q psy8823 162 HPTP---RISWRRENNAILPT----------GGSIYRGSILKIPQITKED--RGTYYCVAENGVGKG----TRRNIAVEV 222 (386)
Q Consensus 162 ~~~~---~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d--~g~y~C~~~~~~~~~----~~~~~~l~v 222 (386)
+.++ .++|++|+..+... ++.....++|.+......| -=..+|.+.-..... .+....-.|
T Consensus 354 YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V 433 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV 433 (566)
T ss_pred ecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc
Confidence 5433 59999998777531 1122334556664432222 336799985432221 133445566
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCee
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQ 265 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~ 265 (386)
..+|.+.+.... -...|.+.-.|. ..+.|+.++..
T Consensus 434 Y~~PtISm~Fed--------G~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 434 YPFPNVSIEIID--------GHIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred ccCCeEEEEEeC--------CEEEEecccccCCCceEEEEecCCC
Confidence 667766554221 234688766665 37999877755
No 285
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.58 E-value=2.4e-07 Score=63.84 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=51.3
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCC--------C---------c--eEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPT--------G---------G--SIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--------~---------~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|++|+|.|.........+.|+++....... . . ....+.+|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999998876556689999876432110 0 0 01124689999999999999999999877
Q ss_pred CCceeeeEEEE
Q psy8823 211 GKGTRRNIAVE 221 (386)
Q Consensus 211 ~~~~~~~~~l~ 221 (386)
+......+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 66555555554
No 286
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.58 E-value=2.6e-07 Score=61.97 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=48.5
Q ss_pred cEEEEEEEeeCCC--CcEEEEecCCccccccccccC--CceeE--EeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 41 TVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPIST--GSSLI--IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 41 ~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
.|+|.|.+..... ..+.|++.........+.... ..... ...+|+........+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999885544 369999976532212222111 11111 12456666555557788999999999999999996
Q ss_pred e
Q psy8823 115 V 115 (386)
Q Consensus 115 ~ 115 (386)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 287
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.57 E-value=5e-07 Score=64.51 Aligned_cols=79 Identities=11% Similarity=0.257 Sum_probs=53.5
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee---ee-ee--------cCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ---QV-LT--------NNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~---~~-~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+....+.+|++++|.|.+.+.+...+.|++.... .. +. ...++.+. .........|.|.+++.+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCHH
Confidence 34456788999999999998777779999985421 00 00 11112111 111124678999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|.|.+.+..+
T Consensus 81 DsG~Y~C~~~~~~~ 94 (109)
T cd04983 81 DSAVYFCALSESGG 94 (109)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999997654
No 288
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.56 E-value=2e-06 Score=60.66 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=36.0
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
...+|.|.+++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 468999999999999999999999999999999998875
No 289
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.55 E-value=4.8e-07 Score=62.74 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred cCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCc----eeEEe--eeeec--CceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 238 ALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQ----HYSIS--HFATA--DEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 238 ~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~----~~~~~--~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
..|++|+|.|.... .....+.|++........... ..... .+... ....+..|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998754 333479999986543333221 11000 01000 11235789999999999999999999
Q ss_pred cCCCce-eeEEEEEE
Q psy8823 309 NKLGTS-EKTVELFE 322 (386)
Q Consensus 309 n~~g~~-~~~~~l~v 322 (386)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988655 45666654
No 290
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.54 E-value=1.2e-06 Score=58.61 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=46.8
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeec-CceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATA-DEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
++|.|.+.| +|.+.|+|++++.. +..... ........ .+...+.|.+.....+|+..|+|.|.|+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~--l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQE--LEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEE--CCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 48889999999987 433221 11111111 22234667777777888889999999987544
No 291
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.52 E-value=2e-05 Score=67.62 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=100.2
Q ss_pred eEEEEEcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEE
Q psy8823 95 TYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWR 170 (386)
Q Consensus 95 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~ 170 (386)
+..|.|..++..++|.|+-+..+..+ ......+.+..+.+|.+..... .+.+|+...-.|.+..+.++ .++|+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 36799999999999999877654322 2234556666688887665433 37789999999999654433 69999
Q ss_pred EcCeeeCCCCc-----------eEEeeeEEEECCCCC-CCCeEEEEEEecCCCC-ce---eeeEEEEEEecceEeeCCCc
Q psy8823 171 RENNAILPTGG-----------SIYRGSILKIPQITK-EDRGTYYCVAENGVGK-GT---RRNIAVEVEFAPVITVPKPR 234 (386)
Q Consensus 171 ~~~~~~~~~~~-----------~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~-~~---~~~~~l~v~~~p~~~~~~~~ 234 (386)
+|+..+..... .....++|.+..... +.-=..+|.+.-.... .. +....-.|..+|.+.+....
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~F~~ 353 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVTVED 353 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEEEeC
Confidence 99998762211 112234565555433 2333789998543222 11 23444556667766553221
Q ss_pred ccccCCCcEEEEEEEEecCC--CeeEEEeCCe
Q psy8823 235 LGQALQYDMDLECHVEAYPP--PAIVWIKEDT 264 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~ 264 (386)
-...|.+.--|. ..+.|+.++.
T Consensus 354 --------G~AVCtA~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 354 --------GDAVCTAKCVPSTGVFVSWSVNDH 377 (486)
T ss_pred --------CEEEEecccccCCCeeEEEEccCC
Confidence 234688876665 4899987763
No 292
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.52 E-value=7e-07 Score=59.59 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=47.0
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
++|.|.+.| +|...++|+++|.. +...............+...+.|.+.....+++..|+|.|.|.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~--l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKE--IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEE--CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 689999987 66668999999988 43332222111122223346677777666778888999999986543
No 293
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.51 E-value=1.2e-06 Score=61.10 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=51.2
Q ss_pred cEEEEEEEEecC---CCeeEEEeCCee-----eeeec---Ccee-----EEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 242 DMDLECHVEAYP---PPAIVWIKEDTQ-----QVLTN---NQHY-----SISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 242 ~~~l~C~~~g~p---~~~~~W~~~~~~-----~~~~~---~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+++|.|.....+ ...+.|++.... +.... +... ....+..........|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986443 227999984321 11100 0110 0011111112346789999999999999999
Q ss_pred EEEc-CCCceeeEEEEEE
Q psy8823 306 RAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n-~~g~~~~~~~l~v 322 (386)
.+.+ +.|..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 7787788888776
No 294
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.50 E-value=1.1e-06 Score=61.01 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCcEEEEEEEEecCCC-eeEEEeCCee--eee--e---cCc----eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 240 QYDMDLECHVEAYPPP-AIVWIKEDTQ--QVL--T---NNQ----HYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~-~~~W~~~~~~--~~~--~---~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
|++++|.|........ .+.|++.... ..+ . ... .+.-.............|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6889999997554333 6999985321 000 0 000 01000011112235678999999999999999997
Q ss_pred E-cCCCceeeEEEEEE
Q psy8823 308 A-NKLGTSEKTVELFE 322 (386)
Q Consensus 308 ~-n~~g~~~~~~~l~v 322 (386)
. .+.|..+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56788788888776
No 295
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.50 E-value=1.2e-06 Score=60.10 Aligned_cols=83 Identities=11% Similarity=0.229 Sum_probs=53.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-CCCc--EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-QDYP--VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+.+.+.+..+.+|+.++|.|.+.+. |... |.||+++..+....... ..........+|.+.
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--------------~~~~~~~~~stlt~~ 67 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--------------NTKSPVNAPATITIT 67 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--------------ccCCCceeEEEEEEe
Confidence 356677777778999999999999864 5555 79999887663211100 000111223467776
Q ss_pred ccCCCCCeEEEEEeEEcccc
Q psy8823 102 DIQETDAGYYRCQVIIGINN 121 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~ 121 (386)
..+.+|.-.|+|++.++...
T Consensus 68 ~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 68 VDREDHGANFSCETELDLRP 87 (100)
T ss_pred cchhhCCcEEEEEEEeccCc
Confidence 55555555999999876543
No 296
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.49 E-value=1.8e-06 Score=61.87 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=49.5
Q ss_pred CcccccCCCcEEEEEEEEecCC----CeeEEEeC----Ceeeee--ecCc-------eeEEe-eeeecCceeeeEEEEee
Q psy8823 233 PRLGQALQYDMDLECHVEAYPP----PAIVWIKE----DTQQVL--TNNQ-------HYSIS-HFATADEFTDTTIRVIT 294 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~----~~~~W~~~----~~~~~~--~~~~-------~~~~~-~~~~~~~~~~~~L~i~~ 294 (386)
..+.+.+|++++|.|.....++ ..+.|++. +....+ .... ++... .+..........|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4456788999999999865432 25999752 111111 1100 11000 00111122467899999
Q ss_pred cccCCCeEEEEEEEcCCCc
Q psy8823 295 IEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~ 313 (386)
++.+|+|.|+|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999988764
No 297
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.47 E-value=2.6e-06 Score=60.19 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=48.0
Q ss_pred cccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 234 RLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
......|+.++|.|.+.|+.+ ..++|++||.. +..... ......+ ..+...+.|.+.....++.-.|+|.+.+.
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~--~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNE--LSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHR 91 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE--Cccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeC
Confidence 334557888999999988544 38999999988 332211 1111111 12334556666654444334599999998
Q ss_pred CCcee
Q psy8823 311 LGTSE 315 (386)
Q Consensus 311 ~g~~~ 315 (386)
.....
T Consensus 92 ~l~~p 96 (111)
T cd05772 92 TLQAP 96 (111)
T ss_pred CCCCC
Confidence 65443
No 298
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.47 E-value=8.4e-07 Score=63.36 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee---eeee--cCcee--E----Eeeee-ecCceeeeEEEEeecccC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ---QVLT--NNQHY--S----ISHFA-TADEFTDTTIRVITIEKR 298 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~---~~~~--~~~~~--~----~~~~~-~~~~~~~~~L~i~~~~~~ 298 (386)
.+....+.+|++++|.|.+.+ +.+.+.|++.... ..+. ..... . ...+. .........|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 445667889999999999977 6678999986421 1111 00000 0 00011 111114578999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|.|.+.+..+
T Consensus 83 Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 83 DSAVYLCASSLGGG 96 (110)
T ss_pred hCEEEEEEeeCCCC
Confidence 99999999987543
No 299
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.45 E-value=1.9e-06 Score=59.94 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=62.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccc-cCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+++....+..|+.++|.|.+++... ..+.|+|......+-.... ..+........++....+......+|.|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 4456667889999999999976532 4589999776632212221 12222223456777888888899999999999
Q ss_pred CCCCeEEEEEe
Q psy8823 105 ETDAGYYRCQV 115 (386)
Q Consensus 105 ~~d~G~Y~C~~ 115 (386)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999964
No 300
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.43 E-value=3.8e-06 Score=57.45 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=52.1
Q ss_pred CcEEEEEEEEecCCC-eeEEEeCCee----eeeec---Cc----eeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 241 YDMDLECHVEAYPPP-AIVWIKEDTQ----QVLTN---NQ----HYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~-~~~W~~~~~~----~~~~~---~~----~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
++++|.|.....+.. .+.|.|.... +.... +. .+. ...+. .....+++|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 368999998643333 7999875321 11111 00 000 00011 12234789999999999999999996
Q ss_pred -EcCCCceeeEEEEEE
Q psy8823 308 -ANKLGTSEKTVELFE 322 (386)
Q Consensus 308 -~n~~g~~~~~~~l~v 322 (386)
..+.|+.++++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 567899999998876
No 301
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.43 E-value=3.2e-06 Score=58.03 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=52.7
Q ss_pred eCCCcccccCCCcEEEEEEEEe-cCCCe--eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEA-YPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
+.+....+.+|+.++|.|.+.| .|.+. +.|++++.. +....... ..........+|++..-..+|+-.|+|.
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~--l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET--LSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE--cccceecc---ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 3344455689999999999976 56665 799999988 43321110 1111223466777766666666679999
Q ss_pred EEcCCCce
Q psy8823 307 AANKLGTS 314 (386)
Q Consensus 307 a~n~~g~~ 314 (386)
|.+..+..
T Consensus 81 A~l~l~~~ 88 (100)
T cd05755 81 TELDLRPE 88 (100)
T ss_pred EEeccCcc
Confidence 99987654
No 302
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.42 E-value=3.7e-06 Score=57.44 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 240 QYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 240 g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
|+.+.+.|.+. |+|+|.+.|+.++... ...................+.|.+..-..++...++|.|.|+.-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV--VASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE--CEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce--eeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 77999999864 6888899999999883 1111111111122222345678887766677788999999987554
No 303
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.41 E-value=2.6e-06 Score=61.36 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCcccccCCCcEEEEEEEEecC----CCeeEEEeCCe----eee-e-e-cCceeE--Eeee------eecCceeeeEEEE
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP----PPAIVWIKEDT----QQV-L-T-NNQHYS--ISHF------ATADEFTDTTIRV 292 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~----~~~-~-~-~~~~~~--~~~~------~~~~~~~~~~L~i 292 (386)
+..+.+.+|++++|.|...... ...+.|++... ... + . ...... ...+ ..........|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3445677899999999986532 13699986322 110 1 0 000000 0000 0011123478999
Q ss_pred eecccCCCeEEEEEEEcCCCc
Q psy8823 293 ITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+++.+|+|.|.|.+.|....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999988654
No 304
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.40 E-value=4.1e-06 Score=57.60 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC----CceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT----GGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
..+.+|++|+|.|.... ....+.|+|++...... .........+.|.+++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 35778999999997754 44579999988763221 11112345789999999999999999853
No 305
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.39 E-value=8.1e-05 Score=62.91 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=98.1
Q ss_pred ceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEEEEe-cCCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVR-RPPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 84 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
+|.+-.+....+..|.|+++...|+|.|+-...+..... ..+.+.+.+. .+|.+..... .+.+|+...-.|.+..
T Consensus 195 ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAn 271 (490)
T PHA03271 195 KYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRH 271 (490)
T ss_pred eeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeee
Confidence 444444455667789999999999996644443322221 2333444444 4554554333 3678999999999965
Q ss_pred eCCC---eEEEEEcCeeeCCCCceE------------EeeeEEEECCCCCCCCeEEEEEEecCCCC---ceeeeEEEEEE
Q psy8823 162 HPTP---RISWRRENNAILPTGGSI------------YRGSILKIPQITKEDRGTYYCVAENGVGK---GTRRNIAVEVE 223 (386)
Q Consensus 162 ~~~~---~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~ 223 (386)
+.++ .++|++||.......... ...++|.+.+...+.-=..+|.+.-.... ..+....-.|.
T Consensus 272 YYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY 351 (490)
T PHA03271 272 FYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVY 351 (490)
T ss_pred ecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccc
Confidence 5433 599999988765433211 12234555444333333789998543322 12333344555
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCee
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQ 265 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~ 265 (386)
.+|.+.+... + -...|.+.--|.- .+.|+-++..
T Consensus 352 ~~P~ISv~Fe------d--G~AVCtA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 352 HHPRISLAFK------D--GYAICTIECVPSGITVRWLVHDEP 386 (490)
T ss_pred cCCeEEEEEe------C--CEEEEeccccCCCcEEEEEecCCC
Confidence 6665554322 1 2345777555543 8999877654
No 306
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.36 E-value=9.9e-06 Score=53.12 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=51.6
Q ss_pred ceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+..+..|++++|+|.....+ ...|+|+..+..... ....+..+|.+.+++..|+|.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----------------------~~~~~~ktL~~~qv~~qdSG~ 65 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----------------------ILNQDKKTLNLVQLGPNDSGT 65 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----------------------eccCCccEEEeceeCcccCCE
Confidence 44588999999999986543 448999986654210 001123389999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
++|.+..+ .......+.+.|
T Consensus 66 WtC~V~~~-~k~~~~~~~V~V 85 (88)
T cd07694 66 WDCIVSVN-SSEKTLKLDIKV 85 (88)
T ss_pred EEEEEEEC-ceEEEEEeeEEE
Confidence 99999754 233344444444
No 307
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.35 E-value=2.7e-06 Score=60.29 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=49.7
Q ss_pred cccCCCcEEEEEEEEec-CCCeeEEEeCCee---eee-e--c---------CceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 236 GQALQYDMDLECHVEAY-PPPAIVWIKEDTQ---QVL-T--N---------NQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~---~~~-~--~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
.+.+|+.++|.|.+.+. +...+.|++.... ..+ . . ..++.... ........|+|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHH
Confidence 35689999999999876 5668999985431 101 0 0 11111111 111146689999999999
Q ss_pred CeEEEEEEEcCCC
Q psy8823 300 YGSYICRAANKLG 312 (386)
Q Consensus 300 ~G~Y~C~a~n~~g 312 (386)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998776
No 308
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.35 E-value=3.1e-06 Score=58.83 Aligned_cols=76 Identities=8% Similarity=0.171 Sum_probs=49.0
Q ss_pred cccCCCcEEEEEEEEecCC-C-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 236 GQALQYDMDLECHVEAYPP-P-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~-~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....++.++|.|.+.|..+ . .++|++||.. +...... ......+..+...+.|.+.....++...|+|.+.+...
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGAT--VSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEE--CcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 3446778999999998543 3 7999999988 3222111 11111123334466677777666677889999998764
Q ss_pred c
Q psy8823 313 T 313 (386)
Q Consensus 313 ~ 313 (386)
.
T Consensus 91 ~ 91 (100)
T cd07699 91 S 91 (100)
T ss_pred C
Confidence 3
No 309
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=2.8e-06 Score=60.22 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCe---eeeee-cCceeEE---eeeeecCceeeeEEEEeecccCCCeE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDT---QQVLT-NNQHYSI---SHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~---~~~~~-~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+....+.+|++++|.|.+.+.. ...+.|++... ...+. ....... ..+..........|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 44556778999999999997665 45799997532 11111 1000000 00111111245679999999999999
Q ss_pred EEEEEEcC
Q psy8823 303 YICRAANK 310 (386)
Q Consensus 303 Y~C~a~n~ 310 (386)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998754
No 310
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.34 E-value=2.3e-06 Score=61.61 Aligned_cols=91 Identities=9% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCe---eeeee---cCceeEEeeee--------ecCceeeeEEEEeecc
Q psy8823 232 KPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDT---QQVLT---NNQHYSISHFA--------TADEFTDTTIRVITIE 296 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~---~~~~~---~~~~~~~~~~~--------~~~~~~~~~L~i~~~~ 296 (386)
+....+.+|+++.|.|... ......+.|++... ...+. ........... ........+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4456677899999999998 34445899998433 11111 11011111000 0111235679999999
Q ss_pred cCCCeEEEEEEEcC-CCceeeEEEEEE
Q psy8823 297 KRQYGSYICRAANK-LGTSEKTVELFE 322 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~-~g~~~~~~~l~v 322 (386)
.+|+|.|.|.+... .......+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999987 233344555543
No 311
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.33 E-value=6.7e-06 Score=54.99 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=42.5
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ +|.+.++|++++..+.... ......+.|.+.....++.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999955 5888999999998775321 11122345666666666777999999997655
No 312
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.28 E-value=7.9e-06 Score=61.72 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=59.7
Q ss_pred ccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEE-eeeee-----cCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 235 LGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI-SHFAT-----ADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
..+.+|++++|.|... +...+.+.|+|....+.......... ..+.+ ......+.|+|++++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4567899999999974 55566899999754322111111111 11111 11125688999999999999999997
Q ss_pred Ec-CCC-ceeeEEEEEEEe
Q psy8823 308 AN-KLG-TSEKTVELFESI 324 (386)
Q Consensus 308 ~n-~~g-~~~~~~~l~v~~ 324 (386)
.- +.| ..+..+.|.|..
T Consensus 105 ~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EecCCCCCceeEEEEEEEc
Confidence 64 456 778888888874
No 313
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.28 E-value=1.2e-05 Score=52.73 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+..|++++|+|.....+.| .+.|...+.. .... ......+|.+..++..|+|..+|.+.-...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~--~~~~-----------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k 75 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK--SKQI-----------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSS 75 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCc--ccee-----------ccCCccEEEeceeCcccCCEEEEEEEECce
Confidence 356689999999999664454 9999876654 1100 011467899999999999999999986655
Q ss_pred ceeeEEEEEEE
Q psy8823 313 TSEKTVELFES 323 (386)
Q Consensus 313 ~~~~~~~l~v~ 323 (386)
..+..+.+.|.
T Consensus 76 ~~~~~~~V~Vl 86 (88)
T cd07694 76 EKTLKLDIKVL 86 (88)
T ss_pred EEEEEeeEEEE
Confidence 55666666664
No 314
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.26 E-value=7.1e-06 Score=56.38 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred ccccCCCcEEEEEEEEec--CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAY--PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.....++.++|.|.+.|. |+. .++|.+++.... ..... ......+..+...+.|.+..-.+++.-.|+|.+.+..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~-~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPV-KASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEee-eEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345568899999999998 433 789999975421 11111 1111122223345566666655556667999999986
Q ss_pred Ccee
Q psy8823 312 GTSE 315 (386)
Q Consensus 312 g~~~ 315 (386)
....
T Consensus 87 l~~p 90 (96)
T cd07696 87 LPTP 90 (96)
T ss_pred CCCC
Confidence 5443
No 315
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.26 E-value=3.5e-06 Score=58.45 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=48.4
Q ss_pred ecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 37 DIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
..|+.++|.|.+.+. | ...++|++++..+..... ........++.|.. ...|.|.....+|.|.|+|+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---~~~~~~~~~gt~~~-------~s~l~v~~~~~~~~~~y~C~ 80 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---TTPPVPNSDGTYSV-------SSQLTVSPSDWNSGDTYTCV 80 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---ccccccCCCCCEEE-------EEEEEECHHHhCCCCCEEEE
Confidence 468999999999976 4 467999999876533211 01111112223332 22677877777899999999
Q ss_pred eEEccc
Q psy8823 115 VIIGIN 120 (386)
Q Consensus 115 ~~~~~~ 120 (386)
+.+...
T Consensus 81 v~h~~~ 86 (95)
T cd00098 81 VTHESL 86 (95)
T ss_pred EEeCCC
Confidence 987543
No 316
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.24 E-value=1.9e-05 Score=54.30 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
++.++|.|.+.|+ |+. .++|.+++.. ....... ......+..+...+.|.+ ...+...|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED--SVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE--CcccccccceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence 6789999999996 444 8999999863 1111111 111111111222334444 445789999999987643
No 317
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.24 E-value=1.1e-05 Score=58.15 Aligned_cols=76 Identities=13% Similarity=0.354 Sum_probs=49.5
Q ss_pred CCcccccCCCcEEEEEEEEe--cCCCeeEEEeCCe---eee-e--ec-----------CceeEEeeeeecCceeeeEEEE
Q psy8823 232 KPRLGQALQYDMDLECHVEA--YPPPAIVWIKEDT---QQV-L--TN-----------NQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~~~~~---~~~-~--~~-----------~~~~~~~~~~~~~~~~~~~L~i 292 (386)
+....+.+|++++|.|.+.+ .+.+.+.|++... +.. + .. ..++... .........|+|
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I 81 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEAR---KDVGKSTSTLTI 81 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEE---EECCCCEEEEEE
Confidence 44566778999999999977 5677899998532 111 1 11 0111110 001113568999
Q ss_pred eecccCCCeEEEEEEEcC
Q psy8823 293 ITIEKRQYGSYICRAANK 310 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~ 310 (386)
.+++.+|+|.|.|.+...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999998643
No 318
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.23 E-value=1.2e-05 Score=54.93 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..+.++|.|.+.|+.+. .++|.++|.. +.... ...........+...+.|.+..-...+...|+|.+.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~--~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQV--ATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEE--CcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45669999999985443 7899999987 32211 1111111122233456677776666677889999999876543
No 319
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.21 E-value=1.2e-05 Score=52.69 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=44.4
Q ss_pred EEEEEEEEec-CC-CeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 243 MDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 243 ~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
++|.|.+.|+ |+ ..+.|++++.. +..... .......+..+...+.|.+.....++...|+|.+.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~--~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQE--VTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEE--CCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899999986 44 38999999986 222211 111111233334566777777677788899999988753
No 320
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.20 E-value=9.1e-06 Score=56.61 Aligned_cols=75 Identities=8% Similarity=0.206 Sum_probs=46.5
Q ss_pred cccCCCcEEEEEEEEec--CCCeeEEEeCCee---eeee--cCce--eEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 236 GQALQYDMDLECHVEAY--PPPAIVWIKEDTQ---QVLT--NNQH--YSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~---~~~~--~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
.+.+|++++|.|...+. ....+.|++.... ..+. .... .....+..........|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 4557999875432 1111 0000 000011111112456799999999999999999
Q ss_pred EEcC
Q psy8823 307 AANK 310 (386)
Q Consensus 307 a~n~ 310 (386)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 321
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.19 E-value=2.6e-05 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=48.6
Q ss_pred CcEEEEEEEEecC-CCeeEEEeCCe----eeeeec---CceeE-----EeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 241 YDMDLECHVEAYP-PPAIVWIKEDT----QQVLTN---NQHYS-----ISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 241 ~~~~l~C~~~g~p-~~~~~W~~~~~----~~~~~~---~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
+.++|.|...... ...+.|.|... .+.... +..+. ...+. .....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~-~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFL-NSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEe-cCCCCccEEEEcCCCcccCEEEEEEE
Confidence 3688999985322 23688988542 111110 11110 00011 11124689999999999999999999
Q ss_pred Ec-CCCceeeEEEEE
Q psy8823 308 AN-KLGTSEKTVELF 321 (386)
Q Consensus 308 ~n-~~g~~~~~~~l~ 321 (386)
.. +.|..++.+.|.
T Consensus 80 ~t~P~g~~~~~i~~~ 94 (96)
T cd05889 80 VTYPQGSWEKVIEVV 94 (96)
T ss_pred EeCCCCCeEEEEEEE
Confidence 65 578888877663
No 322
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.19 E-value=2.8e-05 Score=51.97 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=42.8
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ +|.+.|+|+++|..+..... .....+.|.+.....++...|+|++.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999965 58889999999987654221 1122345666666667778999999997654
No 323
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.18 E-value=1.3e-05 Score=55.81 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=47.7
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeee----ecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFA----TADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
....+..++|.|.+.|+.+. .++|++++.. +............ +..+...+.|.+..-...+...|+|.+.+
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~--~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQP--LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEE--CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence 34456789999999996554 6899999987 3322111111111 12233455676755555667789999998
Q ss_pred CCCce
Q psy8823 310 KLGTS 314 (386)
Q Consensus 310 ~~g~~ 314 (386)
.....
T Consensus 90 ~~l~~ 94 (102)
T cd05768 90 EALPL 94 (102)
T ss_pred CCCCc
Confidence 76433
No 324
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.16 E-value=1.9e-05 Score=51.05 Aligned_cols=67 Identities=22% Similarity=0.475 Sum_probs=46.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+.|.|.+.+.+...+.|++++... ...... ..............|.|.++..+|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPL--PSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEEC--CCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 468999988667799999988762 221111 1111222234577899999999999999999988763
No 325
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.14 E-value=2.1e-05 Score=55.62 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=49.5
Q ss_pred EecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCC
Q psy8823 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDR 199 (386)
Q Consensus 131 v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~ 199 (386)
|+++|..............|+.++|.|.+.++.+ ..++|++||..+..... .....+.|.+.....++.
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~ 81 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVH 81 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECcccccc
Confidence 3445544433333334557888999999977544 47999999988643211 122244566665433333
Q ss_pred eEEEEEEecCCC
Q psy8823 200 GTYYCVAENGVG 211 (386)
Q Consensus 200 g~y~C~~~~~~~ 211 (386)
..|+|.+.+...
T Consensus 82 ~~ytC~V~H~~l 93 (111)
T cd05772 82 SQVTCEVQHRTL 93 (111)
T ss_pred CceEEEEEeCCC
Confidence 469999998653
No 326
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.14 E-value=2.3e-05 Score=55.62 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee--EEeeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY--SISHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKL 311 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~ 311 (386)
...++.++|.|.+.|+.+. .++|.+|+.. +...... .........+...+.|.+...+..+ ...|+|.+.+..
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~--l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKE--VTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEE--CCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 3356789999999985444 7899999987 3322211 1111111223346677777666544 567999999997
Q ss_pred CceeeEEE
Q psy8823 312 GTSEKTVE 319 (386)
Q Consensus 312 g~~~~~~~ 319 (386)
........
T Consensus 93 ~~~~~~~~ 100 (115)
T cd05769 93 GTDTDKWQ 100 (115)
T ss_pred Cccceeee
Confidence 76665544
No 327
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.13 E-value=7.1e-05 Score=50.94 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..|+..+|.|.+.|+.++ .++|.+||.. +............+..+.....| .+.+.+...|+|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~--~~~~~~~~~~p~~d~tyq~~s~l---~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK--IPKVEQSDLSFSKDWTFYLLKST---EFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEE--CCCcEECcEEECCCCCEEEEEEE---EECCCCCCeEEEEEEECCC
Confidence 346677999999996544 7899999988 33221111222222222222333 3446677789999998653
No 328
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.10 E-value=3.1e-05 Score=51.95 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCCcEEEEEEEEecCC-C-eeEEEeCCeeeeeecCceeEEee-eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 239 LQYDMDLECHVEAYPP-P-AIVWIKEDTQQVLTNNQHYSISH-FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~-~-~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.++.++|.|.+.|+.+ . .+.|++++.. +.......... ..++.+...+.|.+. ..+...|+|.+.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~--~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKE--VTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEE--ETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccce--eeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 4789999999998544 4 7999999987 44433322221 122333345556665 666678999999886543
No 329
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.09 E-value=0.00011 Score=50.36 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=43.5
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..|+.++|.|.+.|+.++ .++|++++.. +.... ........+..+...+.|.+ ..++...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQE--ETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCee--cCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCCC
Confidence 357889999999995444 7899999987 33321 11111111112222334443 4456678999999886543
No 330
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.08 E-value=4.6e-05 Score=52.27 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.++.++|.|.+.|+.+. .++|.++|.. .............+..+...+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE--CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999996443 7899999986 21111111111112333345666666555445667999999875
No 331
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.07 E-value=0.00014 Score=49.65 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=41.8
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.++.++|.|.+.|+ |.. .++|.+||.. +...... ......+..+...+.|.+. +++...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~--~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVP--VTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeE--ccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence 45668999999995 433 7899999987 4332111 1111122222234455554 3456689999998753
No 332
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.06 E-value=2e-05 Score=50.83 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcc
Q psy8823 42 VELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 42 v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 119 (386)
+.|.|.+.+.+...+.|++++......... ..............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999987677789999977554221111 111122233455689999999999999999987543
No 333
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.06 E-value=1.6e-05 Score=55.40 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=45.9
Q ss_pred EEEeCCccEEEEEEeee-eCCCeEEEEEcCeee-----C-------C-CCceEE------eeeEEEECCCCCCCCeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGG-HPTPRISWRRENNAI-----L-------P-TGGSIY------RGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~-----~-------~-~~~~~~------~~~~l~i~~~~~~d~g~y~C 204 (386)
+.+.+|++++|.|.... .....+.|++..... . . ..+... ....|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35788999999998854 345578999864211 0 0 011111 13579999999999999999
Q ss_pred EEecCC
Q psy8823 205 VAENGV 210 (386)
Q Consensus 205 ~~~~~~ 210 (386)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998754
No 334
>KOG1480|consensus
Probab=98.05 E-value=1.7e-06 Score=78.37 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=111.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC----cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY----PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
..|.|...|.+-.+..|.++.|.|.+...+.. .-.|..+............++-. ....+.
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~---------------~~~~si 87 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG---------------VREVSI 87 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee---------------EEeeee
Confidence 56788888999999999999999998643322 23576654432111111011100 011144
Q ss_pred EEcccCCCCCe---EEEEEeE--EcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEc
Q psy8823 99 LVKDIQETDAG---YYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRE 172 (386)
Q Consensus 99 ~i~~~~~~d~G---~Y~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~ 172 (386)
.|.....++.| .|.|+-. ...+...+....+.+.+-.......+....+..+..+.+.|.. .+.|...+.|+++
T Consensus 88 ~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~ 167 (909)
T KOG1480|consen 88 DISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN 167 (909)
T ss_pred eeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence 55555555544 5777643 2222111211112211112222333444567788899999987 6778889999999
Q ss_pred CeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 173 NNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 173 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+..+.+..... .....+++..+...|.|+|+|++.|.........+.+.+
T Consensus 168 e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 168 EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 98776633322 235679999999999999999999977765555555444
No 335
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.05 E-value=4.3e-05 Score=51.01 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|.|.+.| +|...++|+++|..+.... +.....+.|.+.....++...|+|++.|....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999965 6778899999998864322 11223456777766667777999999986544
No 336
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.03 E-value=5.9e-05 Score=51.69 Aligned_cols=73 Identities=10% Similarity=0.117 Sum_probs=46.1
Q ss_pred CcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 241 YDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 241 ~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
....+.|.+ .|+|.+.|+|+++... ..........++.....+.|.+.....+|+-.|+|.+.|+.-.....+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~-----~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGG-----EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCC-----cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 467789998 5789999999987211 111111111112233466788877777777779999999875544433
No 337
>PHA02982 hypothetical protein; Provisional
Probab=98.02 E-value=0.0016 Score=49.85 Aligned_cols=138 Identities=13% Similarity=0.208 Sum_probs=74.4
Q ss_pred ccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCcccc-cccccc-CCc-eeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVT-EPLPIS-TGS-SLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
..+..+..|++|.|.|...... -....|+++...... .....+ -+. .....+-+.......+..+++|+|.++..+
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~ 110 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence 3455678899999999965332 345789986533211 000000 000 000011122222223345669999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeC-CccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE-GQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
..|-|+|++....+....-..-|.|+...... ...+ ...-.+.|-+.+.......|.-+|-.
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999985443333323344442221111 1222 33456899886554443489877653
No 338
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.01 E-value=3.4e-05 Score=52.83 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=47.9
Q ss_pred ccccCCCcEEEEEEEEecC--CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAYP--PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p--~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.....+..++|.|.+.++. .. .++|.+++... ..........+..+...+.|.+..-.+..+..|+|.+.+..
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~----~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKE----AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCccC----cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 3344678899999999854 22 79999998751 11111111223334456777777656666667999999886
Q ss_pred C
Q psy8823 312 G 312 (386)
Q Consensus 312 g 312 (386)
.
T Consensus 90 l 90 (99)
T cd04986 90 G 90 (99)
T ss_pred c
Confidence 5
No 339
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.01 E-value=5.7e-05 Score=54.45 Aligned_cols=77 Identities=16% Similarity=0.373 Sum_probs=49.4
Q ss_pred CCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCee---eee-ec--------CceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQ---QVL-TN--------NQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~---~~~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
.+....+..|++++|.|..... ....+.|++.... ..+ .. ..++.... ........|+|.+++.
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQL 81 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCH
Confidence 3445667899999999998754 3457999974321 111 10 11111110 0112356899999999
Q ss_pred CCCeEEEEEEEcC
Q psy8823 298 RQYGSYICRAANK 310 (386)
Q Consensus 298 ~d~G~Y~C~a~n~ 310 (386)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999999853
No 340
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=4.3e-05 Score=53.14 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred CCeeeeecccee-eecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQEQI-KDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~-v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+|.+.+.+.... ...++.++|.|.+.+. | ...|+|++++..+... ..........++.|... ..|.+
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~---~~~~~~~~~~dgty~~~-------s~L~v 70 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG---VQTSTTEQQSDNTYSLS-------SYLTL 70 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc---EeccccEECCCCCEEEE-------EEEEE
Confidence 355666554443 4468889999999864 3 5679999998765321 11111111223444432 26767
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
.....++...|+|++.+..
T Consensus 71 ~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 71 TKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cHHHhCCCCeEEEEEEecC
Confidence 6666666789999998753
No 341
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.96 E-value=3e-05 Score=54.93 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=43.2
Q ss_pred EEeCCccEEEEEEeeee-CCCeEEEEEcCeee-----------CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 146 VVSEGQPVQLECFAGGH-PTPRISWRRENNAI-----------LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~-----------~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+|++++|.|.+.+. ....+.|++..... .. ...... ....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998653 34579999854320 00 001100 123699999999
Q ss_pred CCCeEEEEEEec
Q psy8823 197 EDRGTYYCVAEN 208 (386)
Q Consensus 197 ~d~g~y~C~~~~ 208 (386)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 342
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.95 E-value=0.00011 Score=50.43 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=44.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+.... |+.++|.|.+.+. |. ..++|++++...... ..........++.|.. ...|.|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~---~~~~~~~~~~d~ty~~-------~s~l~v~ 68 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDD---VESGEILPNGDGTYQL-------WVTLEVP 68 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccc---ccccceEECCCCeEEE-------EEEEEEC
Confidence 466666554432 7889999999974 43 479999988522111 0001111111222222 1144443
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
..|.+.|+|++.+..
T Consensus 69 ---~~~~~~ytC~V~H~~ 83 (93)
T cd07698 69 ---PEDKARYSCRVEHSG 83 (93)
T ss_pred ---CCCCCEEEEEEEeCC
Confidence 348899999998754
No 343
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.92 E-value=0.00014 Score=49.56 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=49.1
Q ss_pred CceEEEeCCccEEE-EEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 142 TRSLVVSEGQPVQL-ECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 142 ~~~~~~~~g~~v~l-~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.....+.+|+.+.+ .|.+ .|.|+++|+|+.+..... ..++...-.+.+.+...+.+|...++|.+.+...
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34556778999888 9987 788999999998743321 1122333455677777666677799999998654
No 344
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.90 E-value=0.0001 Score=50.21 Aligned_cols=63 Identities=25% Similarity=0.518 Sum_probs=45.0
Q ss_pred CccEEEEEEe-eeeCCCeEEEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFA-GGHPTPRISWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.+.+.|.+ .++|++.++|+.++..+.. ........+.|.+..-..++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999977 6788899999999987711 1112223456777766666777999999987654
No 345
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.89 E-value=0.00021 Score=46.79 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=41.6
Q ss_pred cEEEEEEeeee-CC-CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 152 PVQLECFAGGH-PT-PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 152 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.++|.|.+.|. |+ ..++|+++|..+... ++.....+.|.+.....++...|+|.+.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 36899999886 43 479999999863321 11222345677777677777899999987543
No 346
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.87 E-value=6.8e-05 Score=52.71 Aligned_cols=73 Identities=18% Similarity=0.398 Sum_probs=45.0
Q ss_pred ccCCCcEEEEEEEEecCCCeeEEEeCCee-----eeee---cCceeE-------EeeeeecCceeeeEEEEeecccCCCe
Q psy8823 237 QALQYDMDLECHVEAYPPPAIVWIKEDTQ-----QVLT---NNQHYS-------ISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-----~~~~---~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+.+|++|+|.|.........+.|++.... ..+. ...... ...+..........|+|++++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56899999999986554457999975432 1111 100000 00111111124567999999999999
Q ss_pred EEEEEEEc
Q psy8823 302 SYICRAAN 309 (386)
Q Consensus 302 ~Y~C~a~n 309 (386)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999864
No 347
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.85 E-value=0.00016 Score=49.45 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=47.9
Q ss_pred CcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 241 YDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 241 ~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
....+.|.+. |.|.+.++|+++... .................+.|.+.....+|+..|+|.|.|..-.....+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g-----~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG-----NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC-----CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 3577899875 688889999987322 1111111111112234667888777777777899999999765555554
Q ss_pred EE
Q psy8823 320 LF 321 (386)
Q Consensus 320 l~ 321 (386)
+.
T Consensus 91 ~~ 92 (95)
T cd07703 91 VT 92 (95)
T ss_pred EE
Confidence 43
No 348
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.84 E-value=6.2e-05 Score=52.47 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=43.4
Q ss_pred eCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC-------------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 148 SEGQPVQLECFAGGHPTP--RISWRRENNAILPTG-------------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..++|.|.+.|+.+. .++|+++|..+.... ......+.|.+..-...+...|+|.+.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~ 93 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP 93 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence 346789999999886554 589999998754221 12223445666555445566899999986543
No 349
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.82 E-value=0.00015 Score=52.51 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=47.6
Q ss_pred CCcccccCCCcEEEEEEEEecC------CCeeEEEeCCeee-----ee-ecCceeEEeee----ee--cCceeeeEEEEe
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP------PPAIVWIKEDTQQ-----VL-TNNQHYSISHF----AT--ADEFTDTTIRVI 293 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~~~~~~~-----~~-~~~~~~~~~~~----~~--~~~~~~~~L~i~ 293 (386)
+..+.+.+|+.|+|.|...... ...+.|++..... .. ..........+ .- ........|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3445677899999999874322 2358999864321 11 11000000001 00 122346789999
Q ss_pred ecccCCCeEEEEEEEcC
Q psy8823 294 TIEKRQYGSYICRAANK 310 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~ 310 (386)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 350
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.82 E-value=0.00024 Score=48.66 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=40.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+..++|.|.+.|+.++ .++|.++|.. +..+.... .....+ .+...+.|.+..-. ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~--~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSP--SILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEE--CcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3345679999999995444 7899999987 33221111 111111 22234445444322 2344999999854
No 351
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.77 E-value=0.0004 Score=47.48 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+... ...|+.++|.|.+.+. ....++|.+++..+.... .........++.|... ..|.+.
T Consensus 1 ~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~---~~~~~~~~~Dgty~~~-------s~L~v~ 69 (94)
T cd05767 1 PPEVTVFSLKP-VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV---SETRYYPRQDLSFQKF-------SYLNFT 69 (94)
T ss_pred CCEEEEEeCCc-ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCce---EEeeeEeCCCCcEEEE-------EEEEEE
Confidence 35555544432 3457778999999864 346689999987653211 1111122223344332 255554
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
. ++...|+|++.+..
T Consensus 70 ~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 70 P---EEGDIYSCIVEHWG 84 (94)
T ss_pred C---CCCCeEEEEEEeCC
Confidence 3 45669999998753
No 352
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.77 E-value=0.00048 Score=47.23 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=42.3
Q ss_pred eecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 36 KDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+..|+.++|.|.+.+. | ...++|++++..+.... .........++.|... ..|.+. ..+...|+|
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgTy~~~-------s~L~~~---~~~~~~ysC 77 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGV---VSTELIPNGDWTYQIL-------VMLETT---PSRGDTYTC 77 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCc---eecceEECCCCcEEEE-------EEEEEc---CCCCCEEEE
Confidence 3468999999999864 3 34689999998754321 1111111122233332 144443 346679999
Q ss_pred EeEEcc
Q psy8823 114 QVIIGI 119 (386)
Q Consensus 114 ~~~~~~ 119 (386)
++.+..
T Consensus 78 ~V~H~~ 83 (94)
T cd05766 78 VVEHSS 83 (94)
T ss_pred EEEeCC
Confidence 998754
No 353
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.74 E-value=0.00018 Score=44.57 Aligned_cols=61 Identities=23% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
..+.|.|.|.+ ...|.|++ |..+.... ..+|.+.....+-.|.|.|.+.+ .+....|.|+|
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyY 65 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYY 65 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEE
Confidence 35579999965 24599999 65554322 56789999999999999999876 12334555554
No 354
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.73 E-value=0.00023 Score=50.54 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=45.0
Q ss_pred EeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC-----------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 147 VSEGQPVQLECFAGGHPTP--RISWRRENNAILPTG-----------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+.+++.++|.|.+.++.+. .++|++|+..+.... ......+.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3356779999999886443 799999997754321 122234567777666545 45999999986554
No 355
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.65 E-value=0.00088 Score=45.61 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|.+.+.... .+..|+..+|.|.+.+. +...++|.++|..+. . ......+...+..|.... .|.+
T Consensus 2 P~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~---~~~~~~~p~~d~tyq~~s-------~l~~-- 67 (93)
T cd05770 2 PKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-K---VEQSDLSFSKDWTFYLLK-------STEF-- 67 (93)
T ss_pred CEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-C---cEECcEEECCCCCEEEEE-------EEEE--
Confidence 455553322 23457778999999864 455689999997653 1 111122222333443321 4444
Q ss_pred cCCCCCeEEEEEeEEcc
Q psy8823 103 IQETDAGYYRCQVIIGI 119 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~ 119 (386)
...+...|+|++.+..
T Consensus 68 -~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 68 -TPTKGDEYACRVRHNS 83 (93)
T ss_pred -CCCCCCeEEEEEEECC
Confidence 4567779999998753
No 356
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.64 E-value=0.00014 Score=49.25 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=52.5
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccc--ccccCCceeEEe---ccceeeecCCCcceEEEEEcccCCCC
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP--LPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
..+...|+++.|.=.........++|.+.-....... +....+...... ..++.+. ..+.+|.|+.++..|
T Consensus 7 ~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~----~enlaLlIkaAq~qD 82 (108)
T PF11465_consen 7 HVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT----SENLALLIKAAQPQD 82 (108)
T ss_dssp EEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE----TTTTEEEESS-SGGG
T ss_pred ceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee----ccCceEEEeecCccc
Confidence 4456788888887222112234478877553222211 111222211111 2344443 345599999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|.-++.+..+......+.+.|.
T Consensus 83 SG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 83 SGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp -EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEEEEcCCCcEEEEEEEEEee
Confidence 9999999998877766777777664
No 357
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.64 E-value=0.0003 Score=48.16 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=43.4
Q ss_pred CCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGHPT--PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.++.++|.|.+.|+.+ ..++|.++|..+... +......+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4566899999988644 479999999875221 112223456667765555677999999986543
No 358
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.59 E-value=0.00025 Score=48.71 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=43.2
Q ss_pred EeCCccEEEEEEeeee-CC--CeEEEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGH-PT--PRISWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~-~~--~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+..|+.++|.|.+.|. .+ ..++|.++++.... .++.....+.|.+......+.-.|+|.+.+...
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4558899999999888 33 36899998754321 122223345566666555455689999998654
No 359
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.59 E-value=0.00024 Score=51.13 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=45.1
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee-----e---CC----------CCceE-E------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNA-----I---LP----------TGGSI-Y------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~-----~---~~----------~~~~~-~------~~~~l~i~~~ 194 (386)
+....+.+|++++|.|...+.. ...+.||+.... + .. ..... . ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556788999999999875432 456999984321 0 00 00111 1 1236999999
Q ss_pred CCCCCeEEEEEEec
Q psy8823 195 TKEDRGTYYCVAEN 208 (386)
Q Consensus 195 ~~~d~g~y~C~~~~ 208 (386)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999865
No 360
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.58 E-value=0.0011 Score=45.36 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=41.3
Q ss_pred ccEEEEEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 151 QPVQLECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 151 ~~v~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+.|.+ .|.|.+.|+|+++..... ..++.....+.|.+.....+|...|+|++.|....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 347899987 688999999998732211 11112223456777666666667999999996543
No 361
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.56 E-value=0.00084 Score=46.02 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=45.3
Q ss_pred CccEEEEEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 150 GQPVQLECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.....+.|.+ .|.|.++|+|+++..... ...+.....+.|.+.....+|...|+|++.|.... .....+.|.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 3457899998 789999999999721111 11112233456777666666666999999986643 233344443
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.52 E-value=0.046 Score=46.65 Aligned_cols=161 Identities=17% Similarity=0.273 Sum_probs=85.3
Q ss_pred eEEEeCCccEEEEEEee--ee-CCCeEEEEEcCeeeCCC-----------------CceE----------EeeeEEEECC
Q psy8823 144 SLVVSEGQPVQLECFAG--GH-PTPRISWRRENNAILPT-----------------GGSI----------YRGSILKIPQ 193 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~--~~-~~~~v~W~~~~~~~~~~-----------------~~~~----------~~~~~l~i~~ 193 (386)
.+.+..|..|.|.|... |+ .-....|+..+-++.+. .... ...++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 44566689999999874 22 23468898655332210 0011 1246899999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCC-CcEEEEEEEEec-C-CCeeEEEeCCeeeeeec
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAY-P-PPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~ 270 (386)
+..+.+|-|.|++..+... ......+.|...-.+. ...+| ..-...|-+-.. - ++.+.|.-+|-. ...
T Consensus 353 a~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~--~~G 423 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFK-EECRHCFKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVS--FGG 423 (500)
T ss_pred EEEEcCCceEEEEecCcch-hhhhhheEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEE--ecC
Confidence 9999999999999876443 2222233332111111 11122 234467887554 3 447999988865 221
Q ss_pred CceeEEe--eeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCc
Q psy8823 271 NQHYSIS--HFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGT 313 (386)
Q Consensus 271 ~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 313 (386)
...-.+. ............+.|.+-...| --.-.|...-..|.
T Consensus 424 ~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 424 EIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred eecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 1111111 1111122234556666655555 34466776555443
No 363
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.50 E-value=0.0012 Score=45.25 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=40.2
Q ss_pred EeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGHPTP--RISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+..++.++|.|.+.+..+. .++|.++|..+... +......+.|.+..-. ....|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g~ 86 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEGI 86 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECCC
Confidence 3346779999999886443 68999999875322 1122234456555442 23469999998543
No 364
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.47 E-value=0.00066 Score=45.15 Aligned_cols=66 Identities=14% Similarity=0.413 Sum_probs=38.4
Q ss_pred cEEEEEEEEecCCC--eeEEEeCCee---eeee-c---CceeEE----eee--eecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 242 DMDLECHVEAYPPP--AIVWIKEDTQ---QVLT-N---NQHYSI----SHF--ATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 242 ~~~l~C~~~g~p~~--~~~W~~~~~~---~~~~-~---~~~~~~----~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
++.|.|.+.....+ .+.|++.... ..+. . ...+.. ..+ ..........|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765543 7899885521 1111 0 001000 000 011113457899999999999999996
Q ss_pred E
Q psy8823 307 A 307 (386)
Q Consensus 307 a 307 (386)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 365
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.47 E-value=0.0002 Score=51.20 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred eecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 36 KDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..-++.|.|+|.+..- +...|.|..++..+-. .............++..+ .+...++++|.+.....- .|.
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~--~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFI--FDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGN 99 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEE--EETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEE--EcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccc
Confidence 4568999999998741 2334999998864311 000111111111223344 566678889999986655 899
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|++.... .+....+.|..
T Consensus 100 YTCeVt~~~-~ege~~i~Lk~ 119 (130)
T PF08204_consen 100 YTCEVTELS-REGETTIELKY 119 (130)
T ss_dssp EEEEEEETT-EEEEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEEEE
Confidence 999998543 34455555554
No 366
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.43 E-value=0.00048 Score=49.35 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=51.3
Q ss_pred cCCCcEEEEEEEEecC-----CCeeEEEeCCeeeeeecCceeEEee------eeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 238 ALQYDMDLECHVEAYP-----PPAIVWIKEDTQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p-----~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
.-.++|.|+|.+.... ...+.|.+++..+...++....... .......+..+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 3467899999986421 2258999999886555444332210 00111234566888876655 7999999
Q ss_pred EEcCCCceeeEEEEEEE
Q psy8823 307 AANKLGTSEKTVELFES 323 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~ 323 (386)
+.......+..+.|..+
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99999888888888764
No 367
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.41 E-value=0.0017 Score=44.34 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=49.4
Q ss_pred cccccCCCcEEE-EEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 234 RLGQALQYDMDL-ECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 234 ~~~~~~g~~~~l-~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+.+|+.+.+ .|.+ .|.|++.++|+.+.... . ........++.....+.|.+.....+|+-.++|.+.++.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~--~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT--S---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCc--c---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 344567888888 8986 57888899999774331 1 111111122233356677787777778778999999986
Q ss_pred Cce
Q psy8823 312 GTS 314 (386)
Q Consensus 312 g~~ 314 (386)
-..
T Consensus 85 l~~ 87 (97)
T cd07704 85 LQQ 87 (97)
T ss_pred cCC
Confidence 543
No 368
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.41 E-value=0.0017 Score=43.48 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGHPTP--RISWRRENNAILPTGG----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.++.++|.|.+.++.+. .++|++++..+..... .....+.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999886443 6999999987653321 22223456666 55566999999986554
No 369
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.36 E-value=0.002 Score=44.17 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=40.8
Q ss_pred cCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 38 IGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 38 ~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
.++.++|.|.+.+. ....|+|++++.. .... .. .......++.|... ..|.+..........|+|++
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~--~~-~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~ytC~V 83 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV--KT-YPAVLQSGGLYTAS-------SQLTVPASEWKGKESFYCKV 83 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc--EE-CCCEeCCCCCEEEE-------EEEEEeHHHcCCCCcEEEEE
Confidence 56779999999864 3456899999875 2111 00 11111113344332 25665554333356899999
Q ss_pred EEcc
Q psy8823 116 IIGI 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 84 ~H~~ 87 (95)
T cd04985 84 EHPS 87 (95)
T ss_pred EeCC
Confidence 8753
No 370
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.32 E-value=0.00078 Score=46.22 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=42.3
Q ss_pred EeCCccEEEEEEeeeeC---CCeEEEEEcCeeeC-------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGHP---TPRISWRRENNAIL-------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
...+..++|.|.+.+.. ...++|.++|..-. ..+......+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 33578899999998854 34799999986411 1111222345677665544555589999998654
No 371
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.30 E-value=0.38 Score=52.14 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=155.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+...+..+..|++|+|.-.........+.|..++.... ...++.+ .-+..
T Consensus 1700 L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~------------~~s~p~~----------------tHtf~ 1751 (2740)
T TIGR00864 1700 LMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDL------------ETSEPFM----------------SHSFP 1751 (2740)
T ss_pred eEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCc------------ccCCCce----------------EEEcc
Confidence 3344444556789999988776666777899988664210 0011111 01234
Q ss_pred CCeEEEEEeE--EcccceeeeEEEEEEecCCe---eecCCC-ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 107 DAGYYRCQVI--IGINNKISAEVDLQVRRPPV---ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 107 d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~---~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
..|.|.-.+. |..+. ....+.+.|.++.. +....+ ....+..|..+.+.=.+.......+.|..++..-...
T Consensus 1752 ~~G~y~VtVta~N~vss-~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g- 1829 (2740)
T TIGR00864 1752 SAGLHLVTMKAFNELGS-ANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG- 1829 (2740)
T ss_pred CCceEEEEEEEEccccc-cceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc-
Confidence 5788887654 33332 24456666665532 211111 1113556777777666532233468888765431111
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEE--ecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVA--ENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~--~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
.. . ..+..+.|.|+-.+ .|..+. ...+..+.|+.++. +........+..|+.++|.+.+...+..++
T Consensus 1830 ----k~--v---~~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf 1899 (2740)
T TIGR00864 1830 ----KH--A---CMTFPDAGTFAIRLNASNAVSG-KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNF 1899 (2740)
T ss_pred ----ce--e---EEecCCCeEEEEEEEEEcccCc-ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEE
Confidence 01 1 13456789887654 677665 45666777877663 444444556778999999999887777899
Q ss_pred EEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeE--EEEEEEcCCCceeeEEEEEEEecCCCCC--CC
Q psy8823 258 VWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGS--YICRAANKLGTSEKTVELFESIIPVCPP--QT 332 (386)
Q Consensus 258 ~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~--Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~ 332 (386)
.|...+....+. ....+.. ....-|. .+-.|.|..+...+.+.+.|..+-.--. ..
T Consensus 1900 ~w~fGdgs~~~~t~~~t~~H-------------------sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~ 1960 (2740)
T TIGR00864 1900 RLQIGGAAPEVLQPGPRFSH-------------------SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDC 1960 (2740)
T ss_pred EEEeCCCCceeecCCCeEEe-------------------ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCC
Confidence 998775442221 2211110 0111244 4467889999988888877754321110 11
Q ss_pred CCceeecCcceeeeEEe-cCCCC--Ccccc
Q psy8823 333 QPSELLPLRNVNMAVIF-AEQPT--SWEPQ 359 (386)
Q Consensus 333 ~~~~~~~~~~~~~~c~~-~~~p~--~W~~~ 359 (386)
.......|...+|.... .|.|+ .|+.+
T Consensus 1961 c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864 1961 CAAGIATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred cccceecCceEEEEEEEecCCceEEEEEee
Confidence 11125677788888876 66664 68744
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.27 E-value=0.00067 Score=41.82 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=35.0
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.|.+|+|+|...+. .+.|.+++..+... +..+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence 58999999975422 39999998555432 2234444555 889999999964
No 373
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.26 E-value=0.001 Score=41.30 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
...|.|.|.+ .-+|.|++ |.. +... ...+|.|.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~--~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKE--ILEV--------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccc--cccc--------------cccEEeccCcccCCCcceEecCcc
Confidence 3579999965 24699999 444 1110 145677888888999999999977
No 374
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.15 E-value=0.00076 Score=41.58 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.|.+|+|+|...+. .+.|.+++.. +... +..+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~--~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQV--SQGS---------------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCcc--CCCC---------------CceEEeeccC-CCCceEEEEeCCC
Confidence 47899999975422 3999999855 2221 2234444445 8899999999643
No 375
>PHA02633 hypothetical protein; Provisional
Probab=97.15 E-value=0.0017 Score=39.22 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
...|.|.++..+|+|.|.|...|..-..+.++.|.|...+
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 5568899999999999999999998888889999887554
No 376
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.11 E-value=0.064 Score=46.12 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEe-cceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEF-APVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWI 260 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~ 260 (386)
...+.|.++...++|.|+-...+..... ..+.+.+.+.+ +|.+.+.+ ..+..|+...-.|.+..+.+| .++|+
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEE
Confidence 4578999999999996655555433332 23344555544 44444433 345689999999999876655 68999
Q ss_pred eCCeeeeeecCceeEE-eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 261 KEDTQQVLTNNQHYSI-SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.||....-........ -..........++|++.+...+.--..+|.+.=..+
T Consensus 284 ~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 284 QNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred eCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 9998732222111111 000111112234444444333344479999875444
No 377
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.09 E-value=0.034 Score=48.06 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=76.9
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEe
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIK 261 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~ 261 (386)
...|.|..++...+|.|+-...+..+. .....+++..+.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|+.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 456999999999999999997765543 234557777777887665433 46689999999999776555 689999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC-CCeEEEEEEEcC
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR-QYGSYICRAANK 310 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~ 310 (386)
|+..+......+.......+ .....++|++.....+ .--+.+|.+.=.
T Consensus 259 ng~~V~~~~~i~~~~~~~~d-Gfs~vStvtsea~~~~~~PPsLrC~v~W~ 307 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRD-GFSATSTLTSEARAGLAPPRNLTCEFTWH 307 (466)
T ss_pred CCccccCcceeeeeeEecCC-CeeEEEEEeccccccCCCCCCceEEEEEc
Confidence 99883222222222111111 1223444544443221 223689998643
No 378
>PHA02633 hypothetical protein; Provisional
Probab=97.02 E-value=0.002 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.0
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
.|+|.++..+|+|.|.|.+.+.. -.....+.|.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t-~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNET-YSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCC-eeEEEEEEEEEeec
Confidence 79999999999999999998543 33345566766543
No 379
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.00 E-value=0.76 Score=50.06 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=128.5
Q ss_pred cCCCCCeEEEEEeE--EcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 103 IQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+..+.|.|+-.+. |.. +..+....+.|+.+..-.........+..|+.++|.+.+.......+.|..++.......
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~v-s~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAV-SGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EecCCCeEEEEEEEEEccc-CcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 35678899988654 443 333456667777665332222333456789999999988666677899987654321110
Q ss_pred ceEEeeeEEEECCCCCCCCeEEE--EEEecCCCCceeeeEEEEEEecce-EeeCCC-cccccCCCcEEEEEEEEecCCCe
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYY--CVAENGVGKGTRRNIAVEVEFAPV-ITVPKP-RLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
.+.+ ..+.- ..-|.|. -.+.|..+. ....+.+.|..+-. +.+... ......|+..++.-.+....+..
T Consensus 1913 ----~~~t-~~HsY--~~~G~Y~VtV~A~N~Vs~-~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~ 1984 (2740)
T TIGR00864 1913 ----PGPR-FSHSF--PRVDDHMVNLRAKNEVSC-AQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVA 1984 (2740)
T ss_pred ----CCCe-EEeec--CCCCcEEEEEEEEeccce-eeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceE
Confidence 0111 11111 2234454 455676665 44555666655422 222222 11257789999999987666678
Q ss_pred eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE--EEEEcCCCceeeEEEEEEEecCCCCC-CCC
Q psy8823 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI--CRAANKLGTSEKTVELFESIIPVCPP-QTQ 333 (386)
Q Consensus 257 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~v~~~p~~~~-~~~ 333 (386)
+.|++.... +.....+... ..+-+.. ....|.|. -.|.|..|.......+.|..+..... ...
T Consensus 1985 f~W~f~~~~--~~g~~~~~~~-------G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~ 2050 (2740)
T TIGR00864 1985 FAWTFDLHH--LHGDSLVIHM-------GKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAG 2050 (2740)
T ss_pred EEEEeeecc--cCCCcceeec-------CCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeec
Confidence 999866332 1111111000 0011111 13467766 56788888877666666654432111 112
Q ss_pred CceeecCcceeeeEEecCCC----CCcccc
Q psy8823 334 PSELLPLRNVNMAVIFAEQP----TSWEPQ 359 (386)
Q Consensus 334 ~~~~~~~~~~~~~c~~~~~p----~~W~~~ 359 (386)
+.....+..++|.|.....+ ..|..+
T Consensus 2051 p~~~~~n~~v~f~~~~~~~~~~v~~~WDFG 2080 (2740)
T TIGR00864 2051 PQDCFTNKMAQFEAATSPKPNFMACHWDFG 2080 (2740)
T ss_pred CcceecCceEEEEEEEccCCCcEEEEEEec
Confidence 34556677888888875544 367754
No 380
>KOG1480|consensus
Probab=96.98 E-value=0.00022 Score=65.21 Aligned_cols=165 Identities=18% Similarity=0.328 Sum_probs=96.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCC----CeEEEEEcCeeeCCC--C---ceEEeeeEEEECCCCCCCCe---EEEEE--Ee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT----PRISWRRENNAILPT--G---GSIYRGSILKIPQITKEDRG---TYYCV--AE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~--~---~~~~~~~~l~i~~~~~~d~g---~y~C~--~~ 207 (386)
++...+..|.++.|.|.+...+. +.-.|..+....... + ......-...|.....++.+ .|+|+ +.
T Consensus 31 p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~ 110 (909)
T KOG1480|consen 31 PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAW 110 (909)
T ss_pred CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeee
Confidence 34445667999999998854432 234565544332111 1 11112223444444444333 46654 55
Q ss_pred cCCCCceeeeEEEEEEecc-eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCce
Q psy8823 208 NGVGKGTRRNIAVEVEFAP-VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (386)
...+...++...+.+.|-- .+...+.-..+..+..+.+.|.. .+.|...+.|++++.. +....+... .
T Consensus 111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~pd~n~~~--------~ 180 (909)
T KOG1480|consen 111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--IDPDANVIR--------A 180 (909)
T ss_pred cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCC--CCccccchh--------h
Confidence 5555322222222222211 12233444566777888899885 5778889999999887 333322221 2
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
....+.+..+...|.|+|+|+|.|-.+..+.
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhccccc
Confidence 4567889999999999999999999886653
No 381
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.98 E-value=0.04 Score=48.10 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=77.9
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEeC
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKE 262 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~ 262 (386)
..|.|..++...+|.|+-...+..+. .....+++....+|.+.+.+ ..+.+|+...-.|.+..+.++ .+.|+.|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45999999999999999776554332 13345666667777766543 346789999999999776555 6899999
Q ss_pred CeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEEcCC
Q psy8823 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYICRAANKL 311 (386)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~ 311 (386)
+.++...............+.....++|++..... +.--..+|.+.=..
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 99833112112111112222334456666665433 34456999986443
No 382
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.98 E-value=0.042 Score=48.18 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=74.7
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCC--CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEe
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVG--KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIK 261 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~ 261 (386)
..|.|.+++..++|.|+-.+.+... ......+++.+...|.+.+. ...+.+|+...-.|.+..+.++ .++|+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4699999999999999877654332 22346677777778865554 3356789999999999876555 689999
Q ss_pred CCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCC--CeEEEEEEEcC
Q psy8823 262 EDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQ--YGSYICRAANK 310 (386)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~a~n~ 310 (386)
|+.+ +.... .........+.....++|++......| --..+|.+.=.
T Consensus 367 ng~~--V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~ 416 (566)
T PHA03269 367 NFGN--IGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWI 416 (566)
T ss_pred CCcc--cCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEc
Confidence 9887 33211 111111222223344555553322222 34579998644
No 383
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.81 E-value=0.0091 Score=40.53 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=42.0
Q ss_pred ccCCCcEEEEEEEEe-cCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEA-YPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g-~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+|..+++.|.+.+ +|. .++.|+++... +...... -.............+++.....+|+-+|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~--l~~~~f~-~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETL--LPSKSFL-EDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcce--ecccccc-cccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 468999999999975 444 37999986654 3222111 0000001112345566666554554579999975544
No 384
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.78 E-value=0.0089 Score=40.57 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred EeCCccEEEEEEeee-eCC--CeEEEEEcCeeeCCCCc--------eEEeeeEEEECCCCCCCCe-EEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGG-HPT--PRISWRRENNAILPTGG--------SIYRGSILKIPQITKEDRG-TYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~ 211 (386)
+.+|..+++.|.+.+ .|. ..+.|+++...+..... .......+++... ++|.| .|.|.|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 568999999999964 443 46999986654432211 1112345566554 66666 99999976443
No 385
>PHA03042 CD47-like protein; Provisional
Probab=96.58 E-value=0.019 Score=46.32 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCcEEEEEEEEec-----CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAY-----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
-.+++.++|.++.- ..-.+.|.+++..+...++.+ .++|.+...+ .-.|+|+|+|.+...+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-------------~aSL~~~f~~-~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-------------TSSLKFNFSK-NLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-------------ceEEEEeccc-cCCCceeEEEeecccC
Confidence 35789999998542 234699999998855444431 3456654443 3469999999998777
Q ss_pred eeeEEEEEEE
Q psy8823 314 SEKTVELFES 323 (386)
Q Consensus 314 ~~~~~~l~v~ 323 (386)
.+..+.|+-+
T Consensus 96 gk~~IeLk~~ 105 (286)
T PHA03042 96 IKNTIELQYV 105 (286)
T ss_pred ccEEEEEEEE
Confidence 7777666554
No 386
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.36 E-value=0.016 Score=40.75 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=43.9
Q ss_pred ceEEEeCCccEEEEEEeeeeC--C-CeEEEEEcCeee--------------CCCCceE-------EeeeEEEECCCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--T-PRISWRRENNAI--------------LPTGGSI-------YRGSILKIPQITKED 198 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~-~~v~W~~~~~~~--------------~~~~~~~-------~~~~~l~i~~~~~~d 198 (386)
....+..|+.++|.|.+.|.. . ..+.|.|..... ....... .+.-.|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 345677899999999996643 2 468898843221 0001110 113479999999999
Q ss_pred CeEEEEEEec
Q psy8823 199 RGTYYCVAEN 208 (386)
Q Consensus 199 ~g~y~C~~~~ 208 (386)
++.|.|..+.
T Consensus 86 Ta~Y~Ca~e~ 95 (115)
T cd05721 86 TDIYFCKIEL 95 (115)
T ss_pred CeEEEEEeee
Confidence 9999998753
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.15 E-value=0.47 Score=40.84 Aligned_cols=170 Identities=17% Similarity=0.244 Sum_probs=91.5
Q ss_pred eeecCCcEEEEEEEee--C-CCCcEEEEecCCccccccccccCCce---eEEeccceeeecC----CCcceEEEEEcccC
Q psy8823 35 IKDIGGTVELKCSVQY--A-QDYPVIWMKVDRNKVTEPLPISTGSS---LIIRDSRFAIRYD----TASSTYTLLVKDIQ 104 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~--~-~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~L~i~~~~ 104 (386)
.+..|..|.|.|.++- + .-....|+.-+-+..+.......... ....+..|.+... .+..+.+|+|.+++
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 3667999999999873 3 23458999877665322111111110 0112333433332 34456699999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeC-CccEEEEEEeeee--CCCeEEEEEcCeeeCCCCc
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE-GQPVQLECFAGGH--PTPRISWRRENNAILPTGG 181 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~ 181 (386)
.+.+|-|+|++... ........-|.|...-.+.. ..+ ...-.+.|.+... .++.+.|.-+|-.......
T Consensus 355 I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W-------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~ 426 (500)
T PHA02914 355 INNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKW-------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIA 426 (500)
T ss_pred EEcCCceEEEEecC-cchhhhhhheEeccEEEEEE-------EeccCceEEEEEEEEecccCCceeEEEEccEEecCeec
Confidence 99999999998743 22222222233322111111 113 3345678988443 4567999987754322110
Q ss_pred --------eEE---eeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 182 --------SIY---RGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 182 --------~~~---~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
... ....+.|.+-...| --.-.|...-..+.
T Consensus 427 ~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 427 DALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred CcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 000 12356666665555 33556776654443
No 388
>KOG4597|consensus
Probab=95.91 E-value=0.012 Score=51.27 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=63.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeC---CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
...+..+++..++|-+.|.+.+.|+|.+- ...........+ .+........|.|-+....|+|.|+|.+.|.
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~-----e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV-----ENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc-----CCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 34466788999999999999999999753 222112211111 1111235678999999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy8823 311 LGTSEKTVELFESII 325 (386)
Q Consensus 311 ~g~~~~~~~l~v~~~ 325 (386)
.|-..+++.+.+...
T Consensus 280 ~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 280 AGFLRRDVPCSSVKG 294 (560)
T ss_pred cceeeccceeeeecc
Confidence 999999988877644
No 389
>KOG0613|consensus
Probab=95.89 E-value=0.03 Score=55.16 Aligned_cols=209 Identities=10% Similarity=-0.042 Sum_probs=122.6
Q ss_pred EeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---
Q psy8823 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE--- 223 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~--- 223 (386)
...++...+.|.+.+.+.+.+.|+.+....... ...+....+.+....+.+.|+|...+..+.... .+...+.
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~-~v~~~~~i~~ 316 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF-KVTEEAPIGK 316 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccce-eeeEEeeccc
Confidence 445667788888877777777777654433222 122345666677777778888888776655221 1111111
Q ss_pred --e-----------cceEe---eCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 224 --F-----------APVIT---VPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 224 --~-----------~p~~~---~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
+ +|... ..........+..+++.|...+.+.| .+.|++++.......+....+ .....
T Consensus 317 ~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~t 391 (1205)
T KOG0613|consen 317 GKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP-----VGTVT 391 (1205)
T ss_pred cccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc-----ccccc
Confidence 1 11111 11123344456789999999999888 499998876622222221111 11124
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC-CCCC------CCCceeecCcceeeeEEecCCC--C---
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV-CPPQ------TQPSELLPLRNVNMAVIFAEQP--T--- 354 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~-~~~~------~~~~~~~~~~~~~~~c~~~~~p--~--- 354 (386)
...+.+..+...+.+.|.|.|.|..|.........+...+. .++. .........+.++..|...+.+ +
T Consensus 392 s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~ 471 (1205)
T KOG0613|consen 392 SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTV 471 (1205)
T ss_pred CcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeE
Confidence 55678889999999999999999999887655555544332 1111 1222333345777788777776 4
Q ss_pred Ccccccceee
Q psy8823 355 SWEPQRKQLN 364 (386)
Q Consensus 355 ~W~~~~~~l~ 364 (386)
+|.+++....
T Consensus 472 tt~~~~~~~s 481 (1205)
T KOG0613|consen 472 TTIKDGLPLS 481 (1205)
T ss_pred eeccCCcccc
Confidence 5666655543
No 390
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=95.46 E-value=0.98 Score=35.71 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred eEEEEEcCeeeCCCCc----------eEEeeeEEEE-CCCCCCCCeEEEEEEecCCCCce----eeeEEEEEEecceEee
Q psy8823 166 RISWRRENNAILPTGG----------SIYRGSILKI-PQITKEDRGTYYCVAENGVGKGT----RRNIAVEVEFAPVITV 230 (386)
Q Consensus 166 ~v~W~~~~~~~~~~~~----------~~~~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~ 230 (386)
.++|+.|+..+..... .....++|.+ .+...+..-..+|++.-...... +....-.|..+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 5889988876543211 1223456666 33333344489999864333222 2333445566666654
Q ss_pred CCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCee
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQ 265 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~ 265 (386)
... .-...|.+.--|. ..+.|.-++..
T Consensus 88 ~F~--------~g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 88 RFE--------DGYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred Eec--------CCEEEEEcceeeCCCeEEEEEECCcc
Confidence 322 2345688766553 48999987765
No 391
>PHA03042 CD47-like protein; Provisional
Probab=95.18 E-value=0.1 Score=42.30 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCccEEEEEEeeee-----CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGH-----PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
-++++.++|.++.. ....+.|..++..+...++. +..+|.+... ..-.|+|+|++.+....
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccC
Confidence 47889999988542 24469999999887655554 3345555443 34589999999875554
No 392
>PHA03189 UL14 tegument protein; Provisional
Probab=95.13 E-value=0.37 Score=39.77 Aligned_cols=98 Identities=11% Similarity=0.214 Sum_probs=49.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcE--EEEecCCccccccccccCCc------eeEEeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPV--IWMKVDRNKVTEPLPISTGS------SLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v--~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.+..+..|+.++++|.+.... ...| ..-........-......|. .-...+.++++..-......+|.+
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 4566788999999999986432 2222 11111111100011111221 111222333333333334445655
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDL 129 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 129 (386)
++..+-+|.|.|...|...+.....+.|
T Consensus 139 -~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred -EEEecccceEEEEeccccceeeeEEeee
Confidence 4556679999999987765554444433
No 393
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=95.09 E-value=0.15 Score=34.14 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=46.5
Q ss_pred cEEEEEE-EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 242 DMDLECH-VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 242 ~~~l~C~-~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.+.-.|. +.|.|++.|+|.-+-.. ....+.....++.....+.+.+......|+-..+|.+.+..-+...++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G-----~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKG-----EAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCC-----ceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4556899 57899999999744211 11111111112222345667777778888888999999886555566665
Q ss_pred E
Q psy8823 321 F 321 (386)
Q Consensus 321 ~ 321 (386)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 394
>PHA02982 hypothetical protein; Provisional
Probab=94.94 E-value=1.4 Score=34.48 Aligned_cols=156 Identities=15% Similarity=0.237 Sum_probs=83.6
Q ss_pred EEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCC-----C------------c------eEEeeeEEEECCCCCCCCeE
Q psy8823 146 VVSEGQPVQLECFAG-GHPTPRISWRRENNAILPT-----G------------G------SIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~-----~------------~------~~~~~~~l~i~~~~~~d~g~ 201 (386)
....++.|.|.|... +..-....|+++....... . . .....++|+|..+..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 355689999999863 3333468898755332210 0 0 01135789999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeE--E--
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS--I-- 276 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~--~-- 276 (386)
|+|++....+....-.-.+.|+.... +.-. .....-.+.|-+-+.-.+-..|.-+|-. ..+..+. +
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVgS~~~dvp~W~V~GVv---ttGg~~sg~i~~ 185 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVGSKHGDVPRFIVAGIV---TTGGPMSGEIPK 185 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEEeccCCCccEEEeeEE---ecCCcccccccc
Confidence 99999986655333233444422111 1111 1123455789885544443489877653 1122111 0
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.............+.+.+--.++--.-.|+..-.
T Consensus 186 gfn~~segy~y~~Ikin~s~~~~V~kp~CRy~~~ 219 (251)
T PHA02982 186 GFNQDSEGYRYNSIKINESVTDHIEKPYCRYWID 219 (251)
T ss_pred ccccccCceEEEEEEEcccccccccccEEEEEcC
Confidence 0111222334445555554344555567776543
No 395
>KOG0613|consensus
Probab=94.83 E-value=0.15 Score=50.59 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=115.8
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeee-EEEEEE--------------ecCCeeec--CCCceEEEeCCccEEEEEEe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISA-EVDLQV--------------RRPPVISD--NSTRSLVVSEGQPVQLECFA 159 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~l~v--------------~~~p~~~~--~~~~~~~~~~g~~v~l~C~~ 159 (386)
+..|.+....+.+.|+|......+..... ...+.+ ..++.... .....+....+..+++.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 56667777777788888766443322111 111111 11121111 11233445567779999999
Q ss_pred eeeCCCe-EEEEEcCeeeCCCCceE------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe-----cce
Q psy8823 160 GGHPTPR-ISWRRENNAILPTGGSI------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF-----APV 227 (386)
Q Consensus 160 ~~~~~~~-v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~ 227 (386)
.+.+.+. +.|++++.......+.. .....+.+..+...+.+.|.|.+.|..+........+.... ++.
T Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~ 438 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPK 438 (1205)
T ss_pred cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcc
Confidence 8888776 99999876654433211 12456788889999999999999998876433322222211 111
Q ss_pred EeeCCCcccccCC--CcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 228 ITVPKPRLGQALQ--YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 228 ~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+.. ........+ +.+.+.|...+++.+ .++|.+++.. ... ... ........+|.+.-....|+|.|
T Consensus 439 ~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~--~s~--~s~-----~l~r~~~tslLlk~~~~~~~A~~ 508 (1205)
T KOG0613|consen 439 FKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLP--LSD--RSV-----TLTRDVLTSLLLKVASLSDGAQY 508 (1205)
T ss_pred ccc-cccccccccCCcccccccCCCCccccceeEeeccCCcc--ccc--ccc-----cccccchhhheeeccCCCccchh
Confidence 111 112222233 678889998888765 4566666544 111 110 01112355677777888888888
Q ss_pred EEEEEcCCCc
Q psy8823 304 ICRAANKLGT 313 (386)
Q Consensus 304 ~C~a~n~~g~ 313 (386)
.-......|.
T Consensus 509 ~~a~~~~~~k 518 (1205)
T KOG0613|consen 509 TRALRTLQGK 518 (1205)
T ss_pred hhhhhccCCC
Confidence 6554444333
No 396
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.78 E-value=0.62 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=29.4
Q ss_pred eEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 95 TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 95 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
..-|.|.+++.+++|.|+-...++.+ .....+.|.|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 34799999999999999998876544 445566677765
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.63 E-value=0.059 Score=43.51 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=37.5
Q ss_pred CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 253 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
..|.+.|..+++.. +.......+. .++.|.+.+....++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~-l~gn~~~nIT--------~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP-LSGNSYVNIT--------ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcc-cCCCCeEEEc--------cCceEEeeccccccCCceEEEEEEEe
Confidence 36789999776551 3344444443 47789999999999999999988765
No 398
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.34 E-value=0.51 Score=31.80 Aligned_cols=69 Identities=14% Similarity=0.374 Sum_probs=42.5
Q ss_pred eeccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+.|+..++..|++++..|..... ....+.|..++..++ +.+++...+. ..++++.+.
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---------------~~qy~~in~~---~SsVT~~~~ 69 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---------------GSQYRVINDT---VSSVTLPNL 69 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---------------CGCEEEESTT---EEEEEESS-
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---------------hhHcceeCCe---EEEEEEccC
Confidence 45677788999999999998732 344589999876442 2233332222 246777777
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
....+-.|.|..
T Consensus 70 ~~~~~~L~cC~l 81 (89)
T PF06328_consen 70 NPTGATLFCCKL 81 (89)
T ss_dssp -SSEEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 776666777764
No 399
>KOG4597|consensus
Probab=94.02 E-value=0.11 Score=45.61 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=60.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.--|....+-.|++..+.|.+.|.+...|+|.+.-..- ...+.. +......-.....+.|.|-+....
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr----------~~vv~~-~nq~~e~p~vtstcql~ic~ewq~ 267 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANR----------ENVVMR-PNQTVENPVVTSTCQLVICNEWQA 267 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccc----------cceeec-CccccCCcceeeeeeEEEcchhhc
Confidence 333445566889999999999999999999998743211 111111 111111122345668999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.|+|.+.+..+.. .+.+.+.+
T Consensus 268 ~a~w~tCs~rcg~g~~-~rdv~c~s 291 (560)
T KOG4597|consen 268 DAGWYTCSARCGAGFL-RRDVPCSS 291 (560)
T ss_pred CCCceeecccccccee-eccceeee
Confidence 9999999998654433 34444443
No 400
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=93.41 E-value=1.6 Score=29.42 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+.+.|+..+|..|+++.+.|..+-..+..+.|.-.-. ......+. +-..+.+.|++.
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~------------k~~~~~g~----------~W~~f~LsnV~~ 62 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS------------KTELDSGP----------QWKAFQLSNVTE 62 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE------------EEEEEEET----------TEEEEEEEEE-S
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC------------CcccCCCC----------cEEEEEEEcccc
Confidence 47788999999999999999998633333344432110 00111111 122678888886
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
| ..-.|.+.=. +....+...|+|+.+|.
T Consensus 63 -d-s~~~C~~~C~-g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 63 -D-SSPLCFFNCS-GEQSSASANITVYKPPE 90 (91)
T ss_dssp -C-EEEEEEEEET-TEEEEEEEEEEEEB--S
T ss_pred -C-CeEEEEEEcC-CeEEEeEEeeEEeCCCC
Confidence 4 5667877643 45567888999998874
No 401
>PHA03282 envelope glycoprotein E; Provisional
Probab=93.38 E-value=5.3 Score=35.55 Aligned_cols=39 Identities=33% Similarity=0.341 Sum_probs=26.6
Q ss_pred ceEEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEEEEe
Q psy8823 94 STYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVR 132 (386)
Q Consensus 94 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 132 (386)
.|.+|.|.+++.+|+|.|+-.+....... ..+.+.|.|.
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 35689999999999999999875433222 2333555553
No 402
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.19 E-value=0.76 Score=39.24 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.2
Q ss_pred cEEEEEEEeeC--CCCcEEEEec
Q psy8823 41 TVELKCSVQYA--QDYPVIWMKV 61 (386)
Q Consensus 41 ~v~L~C~~~~~--~~~~v~W~~~ 61 (386)
.++|.|.+.|. ....+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999864 4566899998
No 403
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.16 E-value=0.14 Score=41.37 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCeeeCCCCce--EEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 163 PTPRISWRRENNAILPTGGS--IYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 163 ~~~~v~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
..|.+.|..+++........ ....+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 35789999877666554432 2356779999999999999999997644
No 404
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.13 E-value=5.8 Score=35.17 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec-----CCee-------------ecCCCceEEEeCCccEEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-----PPVI-------------SDNSTRSLVVSEGQPVQLEC 157 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~-------------~~~~~~~~~~~~g~~v~l~C 157 (386)
.-|.|.+++..++|.|+-...++.+......+.|.|.. +|.. ............|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 47999999999999999988866555556666777741 1111 11122334456788887666
Q ss_pred Eeee-----eCCCeEEEEE
Q psy8823 158 FAGG-----HPTPRISWRR 171 (386)
Q Consensus 158 ~~~~-----~~~~~v~W~~ 171 (386)
.... .-...+.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 5431 1234689986
No 405
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.99 E-value=0.65 Score=39.63 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.7
Q ss_pred cEEEEEEEEecCCC--eeEEEeC
Q psy8823 242 DMDLECHVEAYPPP--AIVWIKE 262 (386)
Q Consensus 242 ~~~l~C~~~g~p~~--~~~W~~~ 262 (386)
.++|.|.|.|+-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996555 7899999
No 406
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.04 E-value=0.71 Score=31.81 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
+..|.|..++..|+|.|.-++++..|......+.+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 56899999999999999999999999876777777663
No 407
>KOG1026|consensus
Probab=91.92 E-value=0.35 Score=46.01 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=91.1
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
..+..|..+++.|...+.+-+.+.|+..+........... ......+. ++.|.++|..+. ....+.+.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~-~~~~v~~~~ 272 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVAR-SNPSILLVV 272 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeee--------chhhHHHHhhhh-cCceeeeEE
Confidence 3467788999999999999999999987765543222111 01111111 178999887776 444555555
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEE---EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHV---EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
..++........... .-.|.. .+.|.+...|..++.............. .. ..-+....-.-.+
T Consensus 273 ~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s--~~-----~~C~~~~~~~h~~ 339 (774)
T KOG1026|consen 273 DLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKS--GK-----EQCLPWNDPPHSH 339 (774)
T ss_pred ecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccc--cC-----cCCcccCcCcccc
Confidence 555433222111111 223443 3566667889888766222211111110 00 0112222225567
Q ss_pred CeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 300 YGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.|.|+|.+.|..|.........+...|
T Consensus 340 ~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 340 NGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cCcceeeecccCccccccCcCccccCC
Confidence 899999999999988777666666555
No 408
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.83 E-value=2.5 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=24.8
Q ss_pred eeEEEEeecccCCCeEEEEEE-EcCCCceeeEEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRA-ANKLGTSEKTVELFE 322 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 322 (386)
...+.......+|+|.+.|.| .+.....+..+.|.+
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 334556667779999999999 666555555565554
No 409
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=90.61 E-value=1.6 Score=29.37 Aligned_cols=59 Identities=15% Similarity=0.363 Sum_probs=38.7
Q ss_pred EEEEEEe-eeeCCCeEEEEEc--Cee----eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 153 VQLECFA-GGHPTPRISWRRE--NNA----ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 153 v~l~C~~-~~~~~~~v~W~~~--~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+.-.|.+ .|.|++.|+|.-+ |.. ....++...-.+.+.+......|....+|++.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 5568875 8999999999843 221 111122233345677777777888899999988633
No 410
>PHA03240 envelope glycoprotein M; Provisional
Probab=89.90 E-value=0.65 Score=36.11 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=43.6
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEe-------cCCccccccccccC----CceeEEeccceeeecCCCcceEEEEEc
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMK-------VDRNKVTEPLPIST----GSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+..+.+|++|+|--.-...+...+.||+ +++.... .+-... +.................-.|++|.|.
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~-plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLH-PICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCc-eeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 3457899999997544334667799999 2222111 111110 000000000011122223456699999
Q ss_pred ccCCCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQ 114 (386)
Q Consensus 102 ~~~~~d~G~Y~C~ 114 (386)
++..+|.|+|.-.
T Consensus 111 ~vn~sd~~nYcr~ 123 (258)
T PHA03240 111 HLNLSDAGEYCRK 123 (258)
T ss_pred EEeecCcchhhhc
Confidence 9999999999543
No 411
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.37 E-value=3.8 Score=27.59 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=40.1
Q ss_pred EEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCCCceEEe--eeEEEECCCCCCCCeEEEEEEec
Q psy8823 146 VVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+..|++++..|.... .....+.|..++..+....-.... .+.+++.+......-.|.|....
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 5788999999998842 234579999998865554433332 35677888776666677777543
No 412
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.34 E-value=4.5 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=26.0
Q ss_pred CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 165 PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+.+.|+..+... ...............|+|.+.|.|..
T Consensus 27 ~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 27 PSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEE
T ss_pred hhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcC
Confidence 457776655443 22344567778888999999999953
No 413
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=87.77 E-value=6.6 Score=26.54 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
+.++...+..|+++.+.|+. .-+.| .+.|.-.-....+..+. .-..+.|.+++. | ....|.+.
T Consensus 8 v~P~~~vV~~G~Sv~VNCSt-sC~~p~~~GLET~L~k~~~~~g~-------------~W~~f~LsnV~~-d-s~~~C~~~ 71 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCST-SCPQPEKIGLETSLSKTELDSGP-------------QWKAFQLSNVTE-D-SSPLCFFN 71 (91)
T ss_dssp EESSEEEEETTEEEEEEEEE-SSSS-SEEEEESSSEEEEEEEET-------------TEEEEEEEEE-S-C-EEEEEEEE
T ss_pred EECCccEECCCCCEEEEEcC-CCCCCCcceEEEecCCcccCCCC-------------cEEEEEEEcccc-C-CeEEEEEE
Confidence 34555667789999999998 44444 56665433331121111 234567788886 3 67889988
Q ss_pred cCCCceeeEEEEEEEecC
Q psy8823 309 NKLGTSEKTVELFESIIP 326 (386)
Q Consensus 309 n~~g~~~~~~~l~v~~~p 326 (386)
=......+++.|.|-..|
T Consensus 72 C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 72 CSGEQSSASANITVYKPP 89 (91)
T ss_dssp ETTEEEEEEEEEEEEB--
T ss_pred cCCeEEEeEEeeEEeCCC
Confidence 654455677888776655
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.46 E-value=1.9 Score=38.94 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+.|.|.+++.+|+|.|+-...+..+......+.|.|..
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 47999999999999999988765444444456666654
No 415
>PHA03052 Hypothetical protein; Provisional
Probab=86.36 E-value=2 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.506 Sum_probs=24.1
Q ss_pred cceeeecCCcEEEEEEEeeC---CCCcEEEEecCCc
Q psy8823 32 QEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRN 64 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~ 64 (386)
....+..|+.++|.|.+.-. ..+.|.|.-|+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 45568899999999999733 2345888887643
No 416
>PHA03052 Hypothetical protein; Provisional
Probab=86.15 E-value=2.9 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred ceEEEeCCccEEEEEEee-e--eCCCeEEEEEcCeee
Q psy8823 143 RSLVVSEGQPVQLECFAG-G--HPTPRISWRRENNAI 176 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~-~--~~~~~v~W~~~~~~~ 176 (386)
..+.+..|.+++|.|++. | ...+.+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 566788899999999984 3 234569999988776
No 417
>PHA03112 IL-18 binding protein; Provisional
Probab=85.39 E-value=1.5 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.9
Q ss_pred eecCCcEEEEEEEeeC-CC-CcEEEEecCC
Q psy8823 36 KDIGGTVELKCSVQYA-QD-YPVIWMKVDR 63 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~ 63 (386)
-.+|+.+.|.|.+.+. |. ..+.|..++.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~ 64 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNN 64 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCC
Confidence 4579999999998754 43 3488997763
No 418
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=84.98 E-value=2.1 Score=39.03 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=18.6
Q ss_pred EEEEcccCCCCCeEE--EEEeE--EcccceeeeEEEEEEecCCeeecCC-CceEEEeCCccEEEEEEeeeeC-------C
Q psy8823 97 TLLVKDIQETDAGYY--RCQVI--IGINNKISAEVDLQVRRPPVISDNS-TRSLVVSEGQPVQLECFAGGHP-------T 164 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y--~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~~~~-------~ 164 (386)
.|.|..... -.|.| ...+. ..........+.|.|...|...... .....+..++.+.|.......| .
T Consensus 39 ~l~ip~~~L-~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~ 117 (440)
T PF02010_consen 39 QLTIPPYTL-PPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSG 117 (440)
T ss_dssp ECEEECES---SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred EEEeCcccC-CCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCc
Confidence 677777655 23444 45554 2223344666777777655433222 1222333345677766443222 2
Q ss_pred CeEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEe--cCCCCceeeeEEEEEE--ecceEeeCC
Q psy8823 165 PRISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAE--NGVGKGTRRNIAVEVE--FAPVITVPK 232 (386)
Q Consensus 165 ~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~~l~v~--~~p~~~~~~ 232 (386)
..+.|........ ...........+.|..........|...+. ...+........+.+. .+|.+.+..
T Consensus 118 l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~ 197 (440)
T PF02010_consen 118 LTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISC 197 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEcc
Confidence 4688886543322 001111234456664443333333655553 3333222333344332 233333322
Q ss_pred C---cccccCCCcEEEEEEEEec----CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 233 P---RLGQALQYDMDLECHVEAY----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 233 ~---~~~~~~g~~~~l~C~~~g~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
. ...+..++.+.|...+.+. ....+.|..............+...............|.|..-..+.++.|..
T Consensus 198 ~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~ 277 (440)
T PF02010_consen 198 VSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTF 277 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1225666777776554432 23478898600000000000000000111112235566776555555556664
Q ss_pred --EEEcCCCce-eeEEEEEEEecCCCCC-CCCCce-eecCcceeeeEEe
Q psy8823 306 --RAANKLGTS-EKTVELFESIIPVCPP-QTQPSE-LLPLRNVNMAVIF 349 (386)
Q Consensus 306 --~a~n~~g~~-~~~~~l~v~~~p~~~~-~~~~~~-~~~~~~~~~~c~~ 349 (386)
.|.+..+.. .+++.+.+..+|..-. ...+.. ..-....++.|..
T Consensus 278 ~l~v~~~~~~~~~a~~~~~~n~pP~~g~c~v~P~~G~al~T~Ft~~c~~ 326 (440)
T PF02010_consen 278 RLTVTDSSGSSGSASISFTVNAPPSGGSCSVSPSSGYALETTFTITCSG 326 (440)
T ss_dssp -------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555543 5566666644443111 011111 1122357778864
No 419
>PHA03189 UL14 tegument protein; Provisional
Probab=83.93 E-value=22 Score=29.95 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=21.7
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|++ ++..+.+|.|.|...|..-.--..-.+.|.+
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tHglv~~rf~ivtd 169 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETHGLVLQRFVIVTD 169 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccceeeeEEeeeeee
Confidence 34444 3555778999999999864443333333433
No 420
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.69 E-value=9.9 Score=23.60 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=14.9
Q ss_pred eecCCcEEEEEEEeeCCCCcEEEEe
Q psy8823 36 KDIGGTVELKCSVQYAQDYPVIWMK 60 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~~ 60 (386)
|..|++++|. |++...|.||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4578888876 44556799995
No 421
>PHA03281 envelope glycoprotein E; Provisional
Probab=79.74 E-value=51 Score=30.42 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=45.8
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC-------ee---------ecCCCceEEEeCCccEEEEEEe
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP-------VI---------SDNSTRSLVVSEGQPVQLECFA 159 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------~~---------~~~~~~~~~~~~g~~v~l~C~~ 159 (386)
..|.|.+++..++|.|+--.....+......+.|.|...+ .+ ....-.+.....|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 4799999999999999987763323333445556665422 11 1111123345678888777665
Q ss_pred eee--C---CCeEEEEE
Q psy8823 160 GGH--P---TPRISWRR 171 (386)
Q Consensus 160 ~~~--~---~~~v~W~~ 171 (386)
... . ...+.|+.
T Consensus 378 ~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeeccCCCceeEEEEEE
Confidence 432 2 24699986
No 422
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=78.13 E-value=16 Score=25.43 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=38.4
Q ss_pred eeeecCCcEEEEEEEeeCCC-----C--cEEEEecCCcccccc---ccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 34 QIKDIGGTVELKCSVQYAQD-----Y--PVIWMKVDRNKVTEP---LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~-----~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.....|.++.|+-...+-.. . -|+|-+......... +....+.....-+.+|.+..+ +-+|.|..-
T Consensus 35 i~~~LGs~vlLpLt~egI~KSmnkSi~IlVt~a~Sp~~~vkkKIvSldl~eg~sp~yledgY~FhlE----nLsL~Il~S 110 (126)
T PF06214_consen 35 ILQQLGSSVLLPLTSEGINKSMNKSIHILVTMAKSPGSSVKKKIVSLDLSEGGSPRYLEDGYKFHLE----NLSLEILES 110 (126)
T ss_dssp EEEETTS-EEEESSSTSTSTT----SEEEEEEESSSTT---EEEEEE-TTS-SS-EESSSSEEEETT----TTEEEETT-
T ss_pred HHHHhCcceeeecchhhhhhhhccceEEEEEeccCCccchhheEEEeccccCCCccccccccEEecc----cceeehhcc
Confidence 44667888888866543211 1 155655332221111 122333332233445555443 338999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|.|.|.-...
T Consensus 111 rkE~EGWYfmtlE 123 (126)
T PF06214_consen 111 RKEDEGWYFMTLE 123 (126)
T ss_dssp -GGG-EEEEEEEE
T ss_pred ccccCceEEEEee
Confidence 9999999987653
No 423
>KOG0200|consensus
Probab=77.45 E-value=65 Score=31.05 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=56.4
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEE--EecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ--VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN 173 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~--v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~ 173 (386)
..+.+..+...|.|.|+|.+.+ ....+.+. +...+......+.......+....+ +...+.+.+.|....
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 84 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN-----INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTNL 84 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec-----CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeeee
Confidence 3788888999999999999986 11111221 1111112222222223344555555 322235567776544
Q ss_pred eeeC----CC---------------CceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 174 NAIL----PT---------------GGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 174 ~~~~----~~---------------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.... .. .........+.+.++...+.+.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 85 EIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred cccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 2110 00 00011234677888888999999998876
No 424
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=76.80 E-value=74 Score=30.68 Aligned_cols=272 Identities=13% Similarity=0.150 Sum_probs=142.8
Q ss_pred eecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 36 KDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
...|+.+.|...+.|.....+...-.|... .+..+... ..+ +-++..+|.|.-.+
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~---------------e~~~Y~~~-------n~~---~w~P~~~G~Y~I~v 356 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKES---------------EDSGYIRN-------NIY---TWKPKIAGKYSITL 356 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEE---------------eecccccc-------ceE---EEeeCCCceEEEEE
Confidence 468999999999987665554433333221 11111110 022 23455789999887
Q ss_pred EEccc-----ceeeeEEEEEEecC---Ceeec--CCCceEEEeCCccEEEEEEeeeeCCCeEE-EEE-cCeeeCCCCceE
Q psy8823 116 IIGIN-----NKISAEVDLQVRRP---PVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRIS-WRR-ENNAILPTGGSI 183 (386)
Q Consensus 116 ~~~~~-----~~~~~~~~l~v~~~---p~~~~--~~~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~~-~~~~~~~~~~~~ 183 (386)
.-... -.....+.+.+... |.... ..+.......|+.+.+.|.+.+.....+. |.+ +|..+.. ...
T Consensus 357 ~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~--~~Y 434 (667)
T PRK14081 357 WVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK--IDY 434 (667)
T ss_pred EEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE--eec
Confidence 64211 12244555666553 42111 11112245679999999999765444333 333 4443321 111
Q ss_pred EeeeEEEECCCCCCCCeEEEEEEec--CCCC---ceeeeEEEEEEe-cce-Ee--eCCCcccccCCCcEEEEEEEEecCC
Q psy8823 184 YRGSILKIPQITKEDRGTYYCVAEN--GVGK---GTRRNIAVEVEF-APV-IT--VPKPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 184 ~~~~~l~i~~~~~~d~g~y~C~~~~--~~~~---~~~~~~~l~v~~-~p~-~~--~~~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
.....+.+.+ .-+|.|+-.+.- .... .....+.+.|.. .|. +. +.+.......|+.+++.|.+++...
T Consensus 435 ~~~~~~~f~P---~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~ 511 (667)
T PRK14081 435 GKNNWVNFIP---EEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKD 511 (667)
T ss_pred ccccEEEEEE---CCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCe
Confidence 1233344433 568999987743 2221 134667788875 443 22 2344455778999999999988655
Q ss_pred CeeEE--EeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE--cCCCce----eeEEEEEEEecC
Q psy8823 255 PAIVW--IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA--NKLGTS----EKTVELFESIIP 326 (386)
Q Consensus 255 ~~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~----~~~~~l~v~~~p 326 (386)
..+.. ..+|.-. ....+ .....+++. +.-+|.|+-.+. |..... ...+.+.|..+.
T Consensus 512 v~y~y~~~~NG~~v--------~~t~Y-----s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~ 575 (667)
T PRK14081 512 VLIKYILKINGHKV--------EETDY-----IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREAL 575 (667)
T ss_pred EEEEEEEEECCEEE--------EEeec-----cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCC
Confidence 54443 3344331 11111 123334444 455799987654 433322 346777777542
Q ss_pred CCCCC---CCCceeecCcceeeeEEecCCC
Q psy8823 327 VCPPQ---TQPSELLPLRNVNMAVIFAEQP 353 (386)
Q Consensus 327 ~~~~~---~~~~~~~~~~~~~~~c~~~~~p 353 (386)
+..-. ........+..++|+..+.|--
T Consensus 576 pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~ 605 (667)
T PRK14081 576 PITNTKIKTSKKKFKCNEEVTFSVKSEGGK 605 (667)
T ss_pred CceeeEEEeecceEEcCCeEEEEEEccCCC
Confidence 22211 1334566677888888775433
No 425
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=75.85 E-value=39 Score=27.04 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=52.5
Q ss_pred eEEEEE-cccCCCCCeEEEEEeEEcccc----eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeE
Q psy8823 95 TYTLLV-KDIQETDAGYYRCQVIIGINN----KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRI 167 (386)
Q Consensus 95 ~~~L~i-~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v 167 (386)
.++|.+ .+...+-.=..+|++.=.... ..++...-.|+.+|.+.. ....| ...|.+.-.|. ..+
T Consensus 38 vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv------~F~~g---~AVC~A~CVP~~~v~l 108 (211)
T PF02124_consen 38 VSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV------RFEDG---YAVCTARCVPRGNVTL 108 (211)
T ss_pred EEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE------EecCC---EEEEEcceeeCCCeEE
Confidence 346666 333333445889987632221 123334445666665443 23333 34577755552 579
Q ss_pred EEEEcCeeeCCCCceEEe------eeEEEE---CCCCCCCCe-EEEEEEec
Q psy8823 168 SWRRENNAILPTGGSIYR------GSILKI---PQITKEDRG-TYYCVAEN 208 (386)
Q Consensus 168 ~W~~~~~~~~~~~~~~~~------~~~l~i---~~~~~~d~g-~y~C~~~~ 208 (386)
.|.-++............ -+...| ..++..|+- .|+|.+..
T Consensus 109 ~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 109 RWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence 999877653211111111 112233 333333332 99999975
No 426
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.88 E-value=6.7 Score=34.97 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.0
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeee
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISA 125 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 125 (386)
.|.+.|+..+++|.|.|++..+..-....
T Consensus 334 dL~F~nAp~saSGLYVfVl~yNGHVeAW~ 362 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVNGHVHAWG 362 (540)
T ss_pred ceEecCCCcccCceEEEEEEECCeeeeeE
Confidence 79999999999999999998765544433
No 427
>PHA03112 IL-18 binding protein; Provisional
Probab=72.95 E-value=7.9 Score=28.45 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCe-e-eeeecCceeEEe-----eeeecCceeeeEEEEeecccC-CCeEEEEEEE
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDT-Q-QVLTNNQHYSIS-----HFATADEFTDTTIRVITIEKR-QYGSYICRAA 308 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~-~-~~~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~ 308 (386)
.++.+.|.|.+.++ |.- -+.|..++. . .......++.-. ............|.+.+++.+ +.-+++|...
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~ 116 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLM 116 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEe
Confidence 48899999998866 443 578996652 2 111111111100 001111123455666776644 3347888776
Q ss_pred cCCCceeeE
Q psy8823 309 NKLGTSEKT 317 (386)
Q Consensus 309 n~~g~~~~~ 317 (386)
...|..+.+
T Consensus 117 D~~~~~k~~ 125 (141)
T PHA03112 117 DLDGPIKKS 125 (141)
T ss_pred cCCchhhHH
Confidence 665544433
No 428
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=69.35 E-value=1.1e+02 Score=29.51 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=107.0
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEE-EEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.....|+.+.+.|.+.+.....+. |.+.++... ....+.. +..+. ..+.-+|.|+
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~v--------------e~~~Y~~-------~~~~~---f~P~~~G~Y~ 451 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEE--------------EKIDYGK-------NNWVN---FIPEEKGNYE 451 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEECCEEE--------------EEeeccc-------ccEEE---EEECCCeeEE
Confidence 346689999999999866554443 554433221 1111110 01222 2346789999
Q ss_pred EEeEEccc-----ceeeeEEEEEEec-CCeeec--CCCceEEEeCCccEEEEEEeeeeCCCeEEE--EEcCeeeCCCCce
Q psy8823 113 CQVIIGIN-----NKISAEVDLQVRR-PPVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRISW--RRENNAILPTGGS 182 (386)
Q Consensus 113 C~~~~~~~-----~~~~~~~~l~v~~-~p~~~~--~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W--~~~~~~~~~~~~~ 182 (386)
-.+.-... -.....+.+.|.. .|.... ..+.......|+.+++.|.+++.....+.. +.+|...... .
T Consensus 452 IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t--~ 529 (667)
T PRK14081 452 LEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET--D 529 (667)
T ss_pred EEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe--e
Confidence 98764211 1234567777775 454221 112222356799999999987654433332 3334332111 1
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecC--CCC---ceeeeEEEEEEecceEe---eCCCcccccCCCcEEEEEEEEecCC
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENG--VGK---GTRRNIAVEVEFAPVIT---VPKPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~---~~~~~~~l~v~~~p~~~---~~~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
......+.+. +.-+|.|+-.+.-. ... ...+.+.+.|+.+..+. +.........++.+++.-.+.|...
T Consensus 530 Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~ 606 (667)
T PRK14081 530 YIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKD 606 (667)
T ss_pred ccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCc
Confidence 1123334444 45689998877432 211 23456777787663322 2234455667888888888777655
Q ss_pred CeeEEE
Q psy8823 255 PAIVWI 260 (386)
Q Consensus 255 ~~~~W~ 260 (386)
.-+.++
T Consensus 607 v~Yef~ 612 (667)
T PRK14081 607 VCYEFY 612 (667)
T ss_pred EEEEEE
Confidence 555543
No 429
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=68.56 E-value=33 Score=22.99 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=34.9
Q ss_pred cEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 242 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
...|.+.+.+. ...+.|+.|+.. +..... ...+.+ .....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~--~g~~~~-------------~~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEP--LGTTQP-------------GHQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEE--cccCCC-------------CCeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 44555666555 448999999988 422221 111222 234569999999888887655
No 430
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=67.58 E-value=10 Score=34.38 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=21.2
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAE 126 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 126 (386)
.|.+.|+..+++|.|.|++..+..-.....
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~nghv~aW~y 299 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYNGHVEAWTY 299 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEETTEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEECCeeeeeEE
Confidence 699999999999999999987655444333
No 431
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=67.11 E-value=47 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=17.7
Q ss_pred ccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDR 63 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~ 63 (386)
|-+..+..|+.|.++|..... ....+.|+..++
T Consensus 39 PVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dG 76 (137)
T PF12988_consen 39 PVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDG 76 (137)
T ss_dssp ---SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS
T ss_pred ccccccCCCCEEEEEEEEecCceecccEEEEEEEeecC
Confidence 445557899999999998732 223467776443
No 432
>KOG0200|consensus
Probab=66.67 E-value=50 Score=31.81 Aligned_cols=123 Identities=16% Similarity=0.279 Sum_probs=64.0
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE-EEec-ceEe-eCCCcccccCCCcEEEEEEEEecCCCeeEEEeC
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE-VEFA-PVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~-v~~~-p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~ 262 (386)
...+.+..+...+.|.|+|.+.+ . ...+.+. .... +.+. ..+.......+....+ +...+.+.+.|...
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTN 83 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec--C---ceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeee
Confidence 44677888888999999999998 1 1112222 1111 1111 1222333444555555 33444567788765
Q ss_pred Ceeee---eecCceeEEe-----eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 263 DTQQV---LTNNQHYSIS-----HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 263 ~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
..... .......... ............+.+.++...+.|.|.|...+..+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 145 (609)
T KOG0200|consen 84 LEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPN 145 (609)
T ss_pred ecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCccccccc
Confidence 43210 0110000000 000000224567889999999999999999874333333
No 433
>PHA03283 envelope glycoprotein E; Provisional
Probab=62.49 E-value=27 Score=31.92 Aligned_cols=38 Identities=5% Similarity=-0.000 Sum_probs=32.3
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+.|.|.+++.+++|.|+-...|..+.....+.|.|+.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 45689999999999999999999888666677777776
No 434
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=58.47 E-value=52 Score=21.91 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=26.8
Q ss_pred cEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEE-cCCCce
Q psy8823 242 DMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAA-NKLGTS 314 (386)
Q Consensus 242 ~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~-n~~g~~ 314 (386)
...|.|.+.+-... .++--++-.. +.+..........+...........+.-. .+-.|-|.|+.. +..+..
T Consensus 17 etSL~Ci~s~W~s~esitigrd~~~--~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk~r~~~~r 90 (96)
T PF10430_consen 17 ETSLTCIASDWSSHESITIGRDFEA--LMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGKVRDEVTR 90 (96)
T ss_dssp -EEEEEEE-SS--SS--EEEE-TTT--STT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEEETTEEEE
T ss_pred ceeEEEEecCCcCCCcEEecccchh--hhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEEecCceEE
Confidence 34789988665443 4544443322 22222222222222222222233333333 355699999998 554443
No 435
>PHA03281 envelope glycoprotein E; Provisional
Probab=52.25 E-value=1.2e+02 Score=28.09 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=47.6
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce--Ee---eCCC------------cccccCCCcEEEEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV--IT---VPKP------------RLGQALQYDMDLECH 248 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~--~~---~~~~------------~~~~~~g~~~~l~C~ 248 (386)
.+.|.|.+++..++|.|+-..+...+......+.+.|...+. +. +.+. +.....|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 457999999999999999888866554344456666654221 11 1111 223446888777766
Q ss_pred EEec--CC---CeeEEEeC
Q psy8823 249 VEAY--PP---PAIVWIKE 262 (386)
Q Consensus 249 ~~g~--p~---~~~~W~~~ 262 (386)
.... .. ..+.|++-
T Consensus 377 L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred EeeeccCCCceeEEEEEEe
Confidence 5432 22 27899863
No 436
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.96 E-value=9.4 Score=26.09 Aligned_cols=13 Identities=38% Similarity=0.518 Sum_probs=7.3
Q ss_pred CCcccchhHHHHH
Q psy8823 1 MESKGFIFGFVLF 13 (386)
Q Consensus 1 M~~~~~~~~~~l~ 13 (386)
|.++.+|++.|++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 7877555544443
No 437
>PHA02935 Hypothetical protein; Provisional
Probab=48.07 E-value=1.1e+02 Score=23.90 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=35.1
Q ss_pred eEEEEEcCeeeCCCCce-------------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 166 RISWRRENNAILPTGGS-------------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 166 ~v~W~~~~~~~~~~~~~-------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.-.|+.+++.+...... ...-.-|.|..++.+|+|.|.-+..-..|........+.|.
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvk 138 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVK 138 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEE
Confidence 46799888765322111 11123578888999999999877665555544444444443
No 438
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=47.08 E-value=75 Score=20.37 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=34.3
Q ss_pred CCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE--EEEEcCCCcee
Q psy8823 239 LQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI--CRAANKLGTSE 315 (386)
Q Consensus 239 ~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~ 315 (386)
.+..+.|.....+ .....+.|.+.+.. ...... . .......|.|. ..+.|..|+..
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~--~~~~~~--------------~-----~~~y~~~G~y~v~l~v~n~~g~~~ 71 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGT--SSTGPT--------------V-----THTYTKPGTYTVTLTVTNAVGSAS 71 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCC--ccCCCC--------------E-----EEEeCCCcEEEEEEEEEcCCCcEE
Confidence 5778888877654 23447889765542 111111 0 11223457765 45678788555
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
....+.|
T Consensus 72 ~~~~i~v 78 (79)
T smart00089 72 ATVTVVV 78 (79)
T ss_pred EEEEEEE
Confidence 5555544
No 439
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.62 E-value=20 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=16.2
Q ss_pred eeEEEECCCCCCCCeEEEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~ 205 (386)
+++|.|.++..+|.|+|.-.
T Consensus 104 NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred cceEEEEEEeecCcchhhhc
Confidence 56889999999999998533
No 440
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=45.30 E-value=75 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.0
Q ss_pred ceEEEEEcccCCCCCeEEEEEeEEcc
Q psy8823 94 STYTLLVKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 94 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 119 (386)
...-|.|.+.+.+|+|.|.-+++.+.
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECC
Confidence 34469999999999999999998654
No 441
>PHA03286 envelope glycoprotein E; Provisional
Probab=44.10 E-value=1.4e+02 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=30.0
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeE-EEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKT-VELFES 323 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~ 323 (386)
.+.|+|.+++.+++|.|+-...|..|....+ +.|.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 5669999999999999999999998877654 455554
No 442
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=43.12 E-value=13 Score=22.97 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.6
Q ss_pred eeeEEe-cCCCCCcccccceee
Q psy8823 344 NMAVIF-AEQPTSWEPQRKQLN 364 (386)
Q Consensus 344 ~~~c~~-~~~p~~W~~~~~~l~ 364 (386)
+|+|.+ ..-|++|+-|+..|-
T Consensus 2 tltC~s~~sLPiswYcN~TRLl 23 (71)
T PF11049_consen 2 TLTCPSNASLPISWYCNGTRLL 23 (71)
T ss_pred ceecCCCCCCcccEEECCceee
Confidence 577877 445699999888754
No 443
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=37.10 E-value=1e+02 Score=19.14 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=19.4
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKED 263 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 263 (386)
..+..|+.+.|...........+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 34567888888887722334489999888
No 444
>COG5475 Uncharacterized small protein [Function unknown]
Probab=37.03 E-value=58 Score=19.45 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=19.6
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
...+++..+.+ |.|.|...+..|.....+
T Consensus 18 P~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 18 PRMTVSGYSSD--GMYECRWFDGYGVKREAF 46 (60)
T ss_pred ceEEEeccccC--CeEEEEEecCCCcccccc
Confidence 34555554433 999999999998555443
No 445
>PHA03290 envelope glycoprotein I; Provisional
Probab=34.82 E-value=88 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.1
Q ss_pred cceEEEEEcccCCCCCeEEEEEeEEccc
Q psy8823 93 SSTYTLLVKDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 93 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 120 (386)
.....|.|.+.+.+|+|.|.-+++.+..
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 3445799999999999999999986543
No 446
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=33.13 E-value=2.3e+02 Score=21.93 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=34.6
Q ss_pred EEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeee--cCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 246 ECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFAT--ADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 246 ~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.|..+. ...|.++|.-.... +.++...+.-.... .-..-.+.+.+...+-.+.-.|.|.+.-..
T Consensus 113 vCitseL~s~PtitWsVgs~r--l~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDR--LRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccce--eecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 476643 45679999876655 44433222210000 111123445666666677778999886443
No 447
>KOG1026|consensus
Probab=31.70 E-value=70 Score=31.33 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=50.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+..+..+++.|.+.+.|-|...|+.+... ..+....... -....... -+++|.+.|..|.
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~--~~~~~~~~~~---------c~~~~~~~------~~~~c~~E~~~~~ 263 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLA--SSNTNQTSSL---------CRSECEVL------ENDLCIAENAVAR 263 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeeccccc--ccCCCccccc---------ccccceee------echhhHHHHhhhh
Confidence 45667789999999999999999999987655 2221111000 00111111 1188999999999
Q ss_pred eeeEEEEEEEecC
Q psy8823 314 SEKTVELFESIIP 326 (386)
Q Consensus 314 ~~~~~~l~v~~~p 326 (386)
...++.+.+...+
T Consensus 264 ~~~~v~~~~~~p~ 276 (774)
T KOG1026|consen 264 SNPSILLVVDLPK 276 (774)
T ss_pred cCceeeeEEeccc
Confidence 9988888776553
No 448
>PF15240 Pro-rich: Proline-rich
Probab=30.42 E-value=42 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=11.4
Q ss_pred chhHHHHHHHhhhccccc
Q psy8823 6 FIFGFVLFFLINLTTAQR 23 (386)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~ 23 (386)
||++||.+.++++.+|..
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 556666666667666664
No 449
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=28.25 E-value=48 Score=30.29 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCC-CeEEEEEEe--cCCCCceeeeEEEEEEecc
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKED-RGTYYCVAE--NGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d-~g~y~C~~~--~~~~~~~~~~~~l~v~~~p 226 (386)
+.+.|.. .....+.|........... ........|.|.+-.... ...|...+. +.........+.+.|...|
T Consensus 3 ~~~~C~~--~~~~~y~W~~~~~~~~~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~ 80 (440)
T PF02010_consen 3 VSLNCND--ASTVTYNWTVFSGPSNSIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSP 80 (440)
T ss_dssp ---------------BEEEEES-TT-EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---
T ss_pred ccccccc--ccceEEEEEEEecCCcCccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeecc
Confidence 5678832 2345788986432211000 001123467777766532 235667777 3333334566677776655
Q ss_pred eEeeCC--CcccccCCCcEEEEEEEEecC-------CCeeEEEeCCe
Q psy8823 227 VITVPK--PRLGQALQYDMDLECHVEAYP-------PPAIVWIKEDT 264 (386)
Q Consensus 227 ~~~~~~--~~~~~~~g~~~~l~C~~~g~p-------~~~~~W~~~~~ 264 (386)
...... ....+..++.+.|.....-.| ...+.|.-...
T Consensus 81 l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~ 127 (440)
T PF02010_consen 81 LVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDL 127 (440)
T ss_dssp -----------------------------------------------
T ss_pred ceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCC
Confidence 432211 112223335677766543333 13677875543
No 450
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=27.85 E-value=2.7e+02 Score=21.10 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=12.2
Q ss_pred CCCCeEEEEEeEEccc
Q psy8823 105 ETDAGYYRCQVIIGIN 120 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~ 120 (386)
.+|.+.|+|.+..+.+
T Consensus 69 s~d~~~~sC~I~RPqg 84 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQG 84 (158)
T ss_pred cCCCCceEEEEECCCC
Confidence 3588999999886543
No 451
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=27.45 E-value=1.6e+02 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=26.5
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
...|.|.+.+.+|+|.|.-.++-.......-+.+.
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 55689999999999999999987665554444443
No 452
>PHA03292 envelope glycoprotein I; Provisional
Probab=27.37 E-value=1.9e+02 Score=25.49 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred EEEcccCCCCCeEEEEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEG 150 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g 150 (386)
|.|.+.+.+|+|.|.-+++.+.... .--.+.+.|+.........+.......|
T Consensus 130 L~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy~~~~~~~~dp~~~a~r~~ 183 (413)
T PHA03292 130 LNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVYDFDSPTVPDPEPTTARPE 183 (413)
T ss_pred EEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEecCCCCCCCCcccccCcCC
No 453
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=24.42 E-value=2.2e+02 Score=18.90 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=33.5
Q ss_pred cEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 152 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
...|.+.+.+. ...+.|+.|+..+..... ...+.+.. ...|.|+-.+....|..
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~----~~~~~~~~---~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP----GHQLFWQP---DRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC----CCeEEeCC---CCCeeEEEEEEcCCCCE
Confidence 45566666554 348999999998722221 11233322 45789999888777763
No 454
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.54 E-value=2e+02 Score=24.77 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|.+.+.+|+|.|.-+++.+ +.....-+.+.+
T Consensus 124 L~I~~Pr~~DSGiYyLRV~Ld-ga~~sDvF~lsv 156 (352)
T PHA03289 124 LTIIEPRMSDTGIYYIRVSLA-GRNKSDIFRTSV 156 (352)
T ss_pred EEeCCCCcccCeeEEEEEEeC-CCccCceEEEEE
No 455
>KOG3611|consensus
Probab=21.33 E-value=2.2e+02 Score=28.21 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEcccCCCCCeEEEEEeEEc
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~ 118 (386)
.+.+..++..|+|.|.|.+...
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeEEEEeeccCcccccccccC
Confidence 4788899999999999988643
No 456
>PHA03290 envelope glycoprotein I; Provisional
Probab=20.82 E-value=2.6e+02 Score=24.25 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=31.1
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
....|.|.+...+|+|.|.-.++-.......-+.+.+...|.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vyp~ 168 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVYPA 168 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEecC
Confidence 356789999999999999999987765555555555554443
Done!