Query psy8823
Match_columns 386
No_of_seqs 305 out of 2484
Neff 11.5
Searched_HMMs 29240
Date Fri Aug 16 20:08:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 1.8E-45 6.3E-50 342.2 35.2 338 23-385 196-549 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 6.3E-44 2.1E-48 331.8 34.8 337 23-385 100-455 (570)
3 3laf_A Deleted in colorectal c 100.0 2.3E-42 7.7E-47 308.6 29.5 338 21-385 18-380 (403)
4 3kld_A Contactin 4, axcam, BIG 100.0 9.5E-43 3.3E-47 308.5 25.9 335 23-385 4-362 (384)
5 2rik_A Titin; I-SET IG fold, p 100.0 2.4E-40 8.3E-45 281.2 35.6 277 22-323 3-283 (284)
6 3qs7_E FL cytokine receptor; i 100.0 1.1E-41 3.9E-46 303.7 26.6 332 26-385 50-393 (423)
7 1cs6_A Axonin-1; neural cell a 100.0 8.6E-42 3E-46 302.6 23.8 332 23-385 3-361 (382)
8 3p3y_A Neurofascin; IG domains 100.0 3.2E-42 1.1E-46 307.7 19.8 339 21-385 13-382 (404)
9 2ec8_A MAST/stem cell growth f 100.0 1.7E-41 5.7E-46 313.0 21.3 328 23-385 35-390 (524)
10 3qs9_E FL cytokine receptor; i 100.0 2.9E-40 9.8E-45 302.2 27.7 330 29-385 53-393 (527)
11 2v5m_A Dscam; neurobiology SPL 100.0 7.5E-41 2.6E-45 297.2 22.2 333 23-385 2-368 (388)
12 1bih_A Hemolin; insect immunit 100.0 9.1E-41 3.1E-45 297.4 21.2 336 22-385 4-375 (395)
13 1qz1_A Neural cell adhesion mo 100.0 1.4E-38 4.9E-43 271.2 32.1 277 24-324 2-290 (291)
14 2yd9_A Receptor-type tyrosine- 100.0 1.9E-38 6.5E-43 272.1 31.5 277 21-327 3-294 (304)
15 2ec8_A MAST/stem cell growth f 100.0 3.1E-39 1.1E-43 297.9 27.8 310 24-363 114-447 (524)
16 2rcj_C Light chain; immunoglob 100.0 1E-38 3.5E-43 294.4 29.2 349 29-385 5-399 (523)
17 2wim_A N-CAM 2, NCAM2, neural 100.0 2E-38 6.8E-43 270.4 28.6 279 22-327 2-287 (291)
18 3dmk_A DOWN syndrome cell adhe 100.0 3.9E-38 1.3E-42 305.5 32.4 341 22-385 427-788 (816)
19 3dmk_A DOWN syndrome cell adhe 100.0 1.1E-38 3.8E-43 309.3 28.3 327 33-385 257-595 (816)
20 1e07_A Carcinoembryonic antige 100.0 1E-37 3.5E-42 294.7 33.2 312 34-385 299-619 (642)
21 1e07_A Carcinoembryonic antige 100.0 6.7E-38 2.3E-42 296.0 31.8 337 27-385 2-357 (642)
22 1wio_A CD4, T-cell surface gly 100.0 1.5E-39 5.2E-44 286.0 18.5 310 34-385 4-343 (363)
23 2ocw_A Polymeric-immunoglobuli 100.0 1.1E-36 3.7E-41 284.8 33.6 343 31-385 7-421 (585)
24 2ocw_A Polymeric-immunoglobuli 100.0 7.9E-37 2.7E-41 285.7 31.7 351 23-385 111-524 (585)
25 3laf_A Deleted in colorectal c 100.0 4.2E-37 1.5E-41 274.4 28.4 275 24-325 121-402 (403)
26 3qs9_E FL cytokine receptor; i 100.0 2.2E-37 7.6E-42 283.1 26.3 283 35-363 150-448 (527)
27 1qgc_4 Protein (immunoglobulin 100.0 1.3E-37 4.6E-42 280.7 24.4 350 26-385 3-418 (438)
28 4fqp_A Poliovirus receptor; im 100.0 2E-36 6.7E-41 260.7 27.6 284 29-327 5-307 (313)
29 2rcj_C Light chain; immunoglob 100.0 9E-37 3.1E-41 281.4 27.0 327 23-365 113-470 (523)
30 2o26_X MAST/stem cell growth f 100.0 4E-36 1.4E-40 255.9 26.9 268 22-326 10-290 (290)
31 3ejj_X Macrophage colony-stimu 100.0 8.7E-36 3E-40 253.7 29.0 274 22-326 2-283 (289)
32 1z7z_I Intercellular adhesion 100.0 7.8E-37 2.7E-41 276.6 23.7 307 27-385 89-428 (450)
33 1z7z_I Intercellular adhesion 100.0 3.2E-36 1.1E-40 272.6 26.5 315 27-385 2-342 (450)
34 1igt_B IGG2A intact antibody - 100.0 2.2E-36 7.5E-41 273.0 24.1 330 30-364 6-390 (444)
35 3u83_A Poliovirus receptor-rel 100.0 1.3E-35 4.6E-40 257.6 27.7 290 25-329 15-325 (331)
36 3kld_A Contactin 4, axcam, BIG 100.0 2.2E-35 7.6E-40 261.2 27.5 261 33-323 111-382 (384)
37 4fom_A Poliovirus receptor-rel 100.0 3.8E-36 1.3E-40 258.3 21.1 283 32-327 7-303 (308)
38 4dkd_C Macrophage colony-stimu 100.0 4.4E-36 1.5E-40 255.9 21.1 277 21-329 1-286 (292)
39 2v5m_A Dscam; neurobiology SPL 100.0 5.6E-35 1.9E-39 259.4 27.7 266 25-322 104-387 (388)
40 1cs6_A Axonin-1; neural cell a 100.0 7E-35 2.4E-39 258.2 27.7 262 32-323 109-381 (382)
41 2wng_A Tyrosine-protein phosph 100.0 3.8E-35 1.3E-39 254.2 24.5 287 25-320 4-316 (327)
42 2y25_A Myomesin; structural pr 100.0 7.5E-36 2.5E-40 257.6 18.3 273 23-323 6-314 (317)
43 1iga_A IGA1; immunoglobulin; N 100.0 2.8E-34 9.5E-39 261.3 28.3 334 27-366 4-396 (475)
44 3p3y_A Neurofascin; IG domains 100.0 2.3E-34 7.7E-39 256.9 26.8 266 32-324 124-403 (404)
45 3oq3_B IFN-alpha/beta binding 100.0 1.5E-34 5E-39 250.6 24.7 267 31-322 36-328 (329)
46 3qs7_E FL cytokine receptor; i 100.0 2.4E-34 8.3E-39 256.5 26.1 260 34-331 149-421 (423)
47 3mjg_X Beta-type platelet-deri 100.0 2.4E-34 8.2E-39 244.8 23.9 276 25-329 1-283 (289)
48 3v2a_R Vascular endothelial gr 100.0 3.6E-35 1.2E-39 283.3 20.2 339 23-385 30-396 (772)
49 4dep_C Interleukin-1 receptor 100.0 1.1E-34 3.6E-39 253.8 21.1 280 31-324 14-333 (349)
50 1hzh_H IGG, immunoglobulin hea 100.0 5.7E-35 1.9E-39 264.7 19.4 331 30-365 6-400 (457)
51 1ry7_B FGFR-3, fibroblast grow 100.0 5.1E-36 1.7E-40 260.6 11.9 272 31-327 15-330 (334)
52 3rjd_A High affinity immunoglo 100.0 2.7E-33 9.3E-38 234.8 27.0 239 24-314 1-249 (262)
53 1bih_A Hemolin; insect immunit 100.0 2.6E-33 8.8E-38 249.3 27.7 264 32-322 108-394 (395)
54 1itb_B Type 1 interleukin-1 re 100.0 1.4E-34 4.8E-39 249.4 18.7 273 32-323 13-313 (315)
55 2y23_A Myomesin; structural pr 100.0 5.1E-34 1.7E-38 245.5 22.1 258 34-322 11-310 (312)
56 3v2a_R Vascular endothelial gr 100.0 1.1E-35 3.7E-40 287.0 12.5 349 24-385 223-640 (772)
57 2rik_A Titin; I-SET IG fold, p 100.0 3.1E-32 1.1E-36 231.2 29.7 244 133-385 4-263 (284)
58 1igy_B IGG1 intact antibody MA 100.0 3.3E-36 1.1E-40 271.0 5.2 349 31-385 6-414 (434)
59 3o4o_C Interleukin-1 receptor 100.0 1.7E-34 6E-39 251.4 15.5 285 20-323 14-334 (339)
60 3vh8_G Killer cell immunoglobu 100.0 3.8E-32 1.3E-36 234.1 27.1 270 22-326 22-315 (316)
61 2oz4_A Intercellular adhesion 100.0 8.7E-32 3E-36 225.9 20.2 238 33-324 12-264 (265)
62 1zvo_C Myeloma immunoglobulin 100.0 1.8E-30 6.2E-35 237.6 30.5 331 30-366 6-447 (512)
63 2nzi_A Titin; IG-domain, FNIII 100.0 7.4E-31 2.5E-35 225.0 25.0 260 23-319 3-285 (305)
64 1wio_A CD4, T-cell surface gly 100.0 7.7E-31 2.6E-35 230.5 21.2 225 34-322 106-361 (363)
65 1za6_B IGG heavy chain; immuno 100.0 3.1E-30 1.1E-34 224.8 22.3 281 30-315 6-332 (344)
66 1qz1_A Neural cell adhesion mo 100.0 2.5E-30 8.5E-35 220.2 18.9 236 142-385 9-269 (291)
67 1qgc_4 Protein (immunoglobulin 100.0 5.5E-30 1.9E-34 230.9 20.7 279 24-320 116-435 (438)
68 2jll_A NCAM2, neural cell adhe 100.0 3.4E-28 1.1E-32 215.8 30.7 299 24-349 1-315 (389)
69 2yd9_A Receptor-type tyrosine- 100.0 1.7E-29 6E-34 216.3 21.6 243 133-385 5-270 (304)
70 2wqr_A IG epsilon chain C regi 100.0 1.8E-30 6.1E-35 224.3 15.2 276 23-313 6-309 (323)
71 2wim_A N-CAM 2, NCAM2, neural 100.0 1.6E-29 5.6E-34 215.2 20.2 235 142-385 11-263 (291)
72 3rjd_A High affinity immunoglo 100.0 5.5E-28 1.9E-32 202.4 21.8 218 143-385 9-238 (262)
73 1igt_B IGG2A intact antibody - 100.0 1.3E-28 4.5E-33 222.2 18.7 273 24-313 123-434 (444)
74 2y25_A Myomesin; structural pr 100.0 2.5E-29 8.4E-34 216.7 11.7 234 144-385 15-294 (317)
75 3oq3_B IFN-alpha/beta binding 100.0 1.4E-28 4.6E-33 213.1 15.1 232 143-385 37-309 (329)
76 1ry7_B FGFR-3, fibroblast grow 100.0 1.4E-29 4.8E-34 219.9 7.0 236 142-385 15-306 (334)
77 4dep_C Interleukin-1 receptor 100.0 5.2E-28 1.8E-32 211.4 16.6 232 142-385 14-312 (349)
78 2wng_A Tyrosine-protein phosph 100.0 1.1E-27 3.9E-32 207.2 15.7 242 140-385 8-298 (327)
79 2o26_X MAST/stem cell growth f 100.0 2.6E-27 8.9E-32 201.4 17.5 230 133-385 11-267 (290)
80 1iga_A IGA1; immunoglobulin; N 100.0 3.1E-26 1.1E-30 208.3 25.6 260 37-313 139-443 (475)
81 2y23_A Myomesin; structural pr 100.0 2.9E-27 9.8E-32 203.3 17.3 235 143-385 9-291 (312)
82 1hzh_H IGG, immunoglobulin hea 100.0 2.5E-27 8.4E-32 214.6 17.7 275 24-315 132-445 (457)
83 3u83_A Poliovirus receptor-rel 100.0 4.8E-27 1.7E-31 203.7 18.5 245 135-385 14-299 (331)
84 2wv3_A Neuroplastin; igcam, me 99.9 9E-26 3.1E-30 179.4 24.1 180 134-323 3-189 (190)
85 4fqp_A Poliovirus receptor; im 99.9 3.8E-27 1.3E-31 202.6 16.9 240 142-385 7-283 (313)
86 3vh8_G Killer cell immunoglobu 99.9 9.1E-27 3.1E-31 200.5 19.0 246 127-385 17-287 (316)
87 2j8h_A Titin, connectin; cardi 99.9 5.9E-26 2E-30 181.5 22.4 181 134-323 4-196 (197)
88 2a38_A Titin; Z1Z2, structural 99.9 6.7E-26 2.3E-30 180.8 22.3 173 142-322 12-193 (194)
89 2iep_A Muscle-specific kinase 99.9 3.2E-26 1.1E-30 182.3 20.4 175 142-326 14-192 (192)
90 2jll_A NCAM2, neural cell adhe 99.9 1.1E-25 3.7E-30 199.7 25.8 233 143-382 8-264 (389)
91 2yd1_A Tyrosine-protein phosph 99.9 1.3E-25 4.6E-30 181.6 23.8 183 134-328 6-204 (212)
92 2nzi_A Titin; IG-domain, FNIII 99.9 6.1E-26 2.1E-30 194.4 22.5 206 134-349 4-221 (305)
93 2yd1_A Tyrosine-protein phosph 99.9 1.3E-25 4.4E-30 181.7 22.5 191 21-226 3-202 (212)
94 1igy_B IGG1 intact antibody MA 99.9 3.3E-28 1.1E-32 218.9 7.6 273 24-313 119-424 (434)
95 3ejj_X Macrophage colony-stimu 99.9 5.1E-27 1.7E-31 199.5 14.2 230 140-385 9-260 (289)
96 2yd6_A PTPRD protein; hydrolas 99.9 5.1E-25 1.7E-29 178.2 24.2 186 134-326 6-206 (212)
97 2c5d_C AXL oncogene, tyrosine- 99.9 2.6E-25 8.8E-30 177.5 22.0 183 24-222 2-191 (195)
98 3lcy_A Titin; A-BAND, IG tande 99.9 3.7E-25 1.3E-29 176.8 22.9 182 134-324 7-196 (197)
99 2c5d_C AXL oncogene, tyrosine- 99.9 2.4E-25 8.1E-30 177.7 21.6 167 142-322 9-191 (195)
100 2yd6_A PTPRD protein; hydrolas 99.9 2.8E-25 9.5E-30 179.7 22.2 190 22-228 4-208 (212)
101 3o4o_C Interleukin-1 receptor 99.9 5.8E-27 2E-31 203.8 12.9 234 142-385 25-314 (339)
102 4fom_A Poliovirus receptor-rel 99.9 2.1E-26 7.2E-31 197.5 16.1 236 144-385 8-279 (308)
103 2j8h_A Titin, connectin; cardi 99.9 4E-25 1.4E-29 176.7 22.2 185 23-223 3-196 (197)
104 1rhf_A Tyrosine-protein kinase 99.9 5E-25 1.7E-29 173.8 22.2 165 142-322 9-181 (182)
105 2va4_A NCAM2, N-CAM 2, neural 99.9 2.4E-25 8.3E-30 177.2 20.3 182 134-322 2-191 (192)
106 2v44_A NCAM2, neural cell adhe 99.9 5.1E-25 1.8E-29 174.8 22.1 172 142-322 9-185 (189)
107 1rhf_A Tyrosine-protein kinase 99.9 1.7E-25 6E-30 176.4 19.2 179 24-222 2-181 (182)
108 1itb_B Type 1 interleukin-1 re 99.9 2.6E-27 8.9E-32 203.9 9.4 232 143-385 13-293 (315)
109 2v9r_A Roundabout homolog 1; p 99.9 4.3E-26 1.5E-30 184.5 16.0 203 20-231 5-209 (212)
110 2iep_A Muscle-specific kinase 99.9 1.2E-25 4.2E-30 178.9 18.2 187 22-226 5-192 (192)
111 4fa8_A Secreted protein BARF1; 99.9 5.5E-26 1.9E-30 181.3 15.8 167 145-317 3-195 (203)
112 1epf_A NCAM, protein (neural c 99.9 5.1E-25 1.8E-29 175.1 20.3 173 142-322 9-189 (191)
113 2v5t_A NCAM2, N-CAM 2, neural 99.9 4.8E-25 1.6E-29 175.0 19.6 173 142-323 9-187 (189)
114 2a38_A Titin; Z1Z2, structural 99.9 6.9E-25 2.4E-29 174.8 20.5 184 22-222 3-193 (194)
115 3lcy_A Titin; A-BAND, IG tande 99.9 3.2E-24 1.1E-28 171.4 22.2 186 21-224 4-196 (197)
116 2wv3_A Neuroplastin; igcam, me 99.9 1.1E-23 3.6E-28 167.3 24.6 175 23-223 2-189 (190)
117 3ojm_B Fibroblast growth facto 99.9 9.4E-25 3.2E-29 179.1 18.8 187 143-330 27-227 (231)
118 1epf_A NCAM, protein (neural c 99.9 1.5E-24 5E-29 172.5 19.3 174 24-212 2-180 (191)
119 2v5t_A NCAM2, N-CAM 2, neural 99.9 2E-24 6.9E-29 171.4 20.0 182 24-223 2-187 (189)
120 2c1o_A IGK-C protein; FAB frag 99.9 4.8E-25 1.6E-29 183.6 16.9 207 103-316 11-247 (254)
121 2v44_A NCAM2, neural cell adhe 99.9 3.6E-24 1.2E-28 169.9 21.0 179 26-222 4-187 (189)
122 3rbs_A Myomesin-1; immunoglobu 99.9 2E-24 6.9E-29 173.2 18.9 166 144-322 11-205 (207)
123 3grw_A Fibroblast growth facto 99.9 3.6E-24 1.2E-28 176.8 21.0 187 142-331 22-225 (241)
124 1zvo_C Myeloma immunoglobulin 99.9 5.4E-23 1.8E-27 188.2 30.9 269 38-324 149-505 (512)
125 2oz4_A Intercellular adhesion 99.9 2.9E-25 9.9E-30 186.1 14.2 213 146-385 14-243 (265)
126 1f97_A Junction adhesion molec 99.9 5.8E-25 2E-29 177.8 15.5 182 141-324 7-207 (212)
127 2vr9_A Roundabout 1, ROBO; imm 99.9 1E-24 3.5E-29 177.1 16.8 190 20-222 5-205 (217)
128 2vr9_A Roundabout 1, ROBO; imm 99.9 4.3E-25 1.5E-29 179.3 14.4 190 133-325 8-207 (217)
129 2v9r_A Roundabout homolog 1; p 99.9 7.4E-25 2.5E-29 177.3 15.6 177 142-329 16-207 (212)
130 3k0w_A Mucosa-associated lymph 99.9 3.3E-24 1.1E-28 174.1 19.2 164 142-326 25-204 (218)
131 3sob_L Antibody light chain; b 99.9 1E-24 3.5E-29 179.6 15.4 209 1-212 1-225 (237)
132 4dkd_C Macrophage colony-stimu 99.9 6.4E-26 2.2E-30 193.0 8.4 236 133-385 3-260 (292)
133 1vca_A VCAM-D1,2, human vascul 99.9 2.9E-24 9.9E-29 171.9 17.4 180 144-327 10-200 (202)
134 3k0w_A Mucosa-associated lymph 99.9 5E-24 1.7E-28 173.1 19.0 176 20-226 14-204 (218)
135 3sgj_C Human FCG3A receptor; r 99.9 2.6E-24 8.8E-29 172.4 16.9 160 145-329 17-179 (204)
136 3r4d_A CEA-related cell adhesi 99.9 2.5E-24 8.5E-29 173.6 16.9 193 27-228 2-204 (208)
137 4fa8_A Secreted protein BARF1; 99.9 7.1E-25 2.4E-29 174.9 13.2 179 33-213 2-192 (203)
138 2ifg_A High affinity nerve gro 99.9 4E-26 1.4E-30 198.9 6.2 207 107-326 136-347 (347)
139 3rbs_A Myomesin-1; immunoglobu 99.9 5.7E-24 2E-28 170.6 18.3 170 32-221 10-204 (207)
140 2r15_A Myomesin-1; sarcomeric 99.9 1E-23 3.5E-28 170.5 19.3 170 147-323 14-209 (212)
141 3s97_C Contactin-1; carbonic a 99.9 6.4E-24 2.2E-28 170.2 17.8 174 139-323 12-200 (201)
142 1fnl_A Low affinity immunoglob 99.9 9.3E-24 3.2E-28 165.2 17.3 168 22-224 5-174 (175)
143 1vca_A VCAM-D1,2, human vascul 99.9 2.9E-23 1E-27 166.0 20.0 180 27-227 3-200 (202)
144 3sgj_C Human FCG3A receptor; r 99.9 1.1E-23 3.9E-28 168.7 17.5 170 22-226 5-176 (204)
145 1mq8_A ICAM-1, intercellular a 99.9 3.6E-24 1.2E-28 178.9 15.0 264 27-327 2-285 (291)
146 3b5h_A Cervical EMMPRIN, HAB18 99.9 2.1E-23 7.3E-28 164.7 18.6 167 145-323 8-182 (184)
147 2wqr_A IG epsilon chain C regi 99.9 1.3E-25 4.6E-30 193.7 6.3 232 151-385 25-299 (323)
148 2x1w_L Vascular endothelial gr 99.9 1.9E-23 6.7E-28 168.9 18.2 183 142-327 14-210 (213)
149 1za6_B IGG heavy chain; immuno 99.9 3.6E-24 1.2E-28 186.4 14.7 219 143-366 8-288 (344)
150 3ojm_B Fibroblast growth facto 99.9 2.2E-23 7.7E-28 170.8 18.5 194 18-228 9-225 (231)
151 3jz7_A MCAR, CAR, coxsackievir 99.9 4.6E-24 1.6E-28 172.8 14.1 172 142-323 7-211 (214)
152 2va4_A NCAM2, N-CAM 2, neural 99.9 4.6E-23 1.6E-27 163.9 19.6 177 24-222 2-191 (192)
153 3p2t_A Leukocyte immunoglobuli 99.9 5.9E-23 2E-27 163.8 20.3 178 23-222 4-194 (196)
154 1nbq_A JAM, junctional adhesio 99.9 9.4E-25 3.2E-29 176.2 9.3 180 142-323 11-208 (209)
155 2d3v_A Leukocyte immunoglobuli 99.9 3.1E-23 1.1E-27 165.4 17.9 167 23-211 4-180 (196)
156 1f97_A Junction adhesion molec 99.9 1.8E-23 6.1E-28 169.1 16.7 191 25-224 2-207 (212)
157 3grw_A Fibroblast growth facto 99.9 3E-23 1E-27 171.3 18.4 181 32-229 23-223 (241)
158 3jz7_A MCAR, CAR, coxsackievir 99.9 3.5E-24 1.2E-28 173.5 12.4 194 29-225 5-213 (214)
159 3mj8_L Stimulatory hamster ant 99.9 8E-24 2.7E-28 171.3 14.5 183 26-212 3-202 (213)
160 1f2q_A High affinity immunoglo 99.9 8.4E-24 2.9E-28 165.7 13.2 170 23-227 3-174 (176)
161 3bp6_B Programmed cell death 1 99.9 1.3E-22 4.5E-27 162.7 19.9 173 142-325 9-194 (202)
162 1ugn_A LIR1, leukocyte immunog 99.9 9.4E-23 3.2E-27 162.9 18.9 179 23-223 4-197 (198)
163 2r15_A Myomesin-1; sarcomeric 99.9 1E-22 3.6E-27 164.6 19.2 170 37-224 15-210 (212)
164 1b6u_A KIR2DL3, P58 killer cel 99.9 7.7E-23 2.6E-27 169.2 18.3 221 22-265 5-242 (257)
165 3p2t_A Leukocyte immunoglobuli 99.9 9.1E-23 3.1E-27 162.7 18.0 168 146-322 15-194 (196)
166 1fnl_A Low affinity immunoglob 99.9 5.8E-23 2E-27 160.7 16.5 156 144-324 16-174 (175)
167 2x1w_L Vascular endothelial gr 99.9 4.9E-23 1.7E-27 166.5 16.5 178 31-228 14-211 (213)
168 1f2q_A High affinity immunoglo 99.9 2.1E-23 7.2E-28 163.4 13.8 168 134-327 4-174 (176)
169 2d3v_A Leukocyte immunoglobuli 99.9 4.3E-23 1.5E-27 164.6 15.7 159 146-312 15-180 (196)
170 2gi7_A GPVI protein; IG-like d 99.9 2.7E-23 9.2E-28 163.9 14.2 160 21-211 5-168 (184)
171 3s97_C Contactin-1; carbonic a 99.9 8.1E-23 2.8E-27 163.7 17.3 176 30-223 14-200 (201)
172 3mjg_X Beta-type platelet-deri 99.9 8.7E-24 3E-28 179.5 12.2 223 142-385 7-257 (289)
173 4frw_A Poliovirus receptor-rel 99.9 4.1E-23 1.4E-27 167.6 15.6 191 31-222 6-209 (218)
174 3mj6_A Junctional adhesion mol 99.9 2.3E-23 7.8E-28 174.9 14.5 211 25-242 6-256 (268)
175 1uct_A Immunoglobulin alpha FC 99.9 4.6E-23 1.6E-27 166.8 15.2 183 22-225 7-199 (218)
176 3r4d_A CEA-related cell adhesi 99.9 1.1E-22 3.6E-27 164.0 17.1 171 145-327 9-203 (208)
177 2ny1_B T-cell surface glycopro 99.9 6E-23 2.1E-27 162.1 15.3 159 143-327 3-182 (184)
178 3bkj_L WO2 IGG2A FAB fragment 99.9 3.5E-23 1.2E-27 172.0 14.3 188 22-212 32-240 (252)
179 3bqu_C 3H6 FAB light chain; be 99.9 2.5E-24 8.6E-29 176.8 7.2 187 22-211 21-223 (233)
180 2fbo_J V1V2;, variable region- 99.9 9.6E-23 3.3E-27 169.2 16.8 190 27-219 5-245 (250)
181 2gi7_A GPVI protein; IG-like d 99.9 7.7E-23 2.6E-27 161.3 15.3 147 146-312 18-168 (184)
182 1nbq_A JAM, junctional adhesio 99.9 2E-23 7E-28 168.3 11.7 191 24-223 4-208 (209)
183 4f80_A Butyrophilin subfamily 99.9 1.1E-22 3.6E-27 166.2 15.9 174 143-324 12-213 (226)
184 2ifg_A High affinity nerve gro 99.9 8.7E-23 3E-27 177.8 16.2 179 23-226 157-347 (347)
185 3bp6_B Programmed cell death 1 99.9 8E-23 2.7E-27 163.9 14.7 180 27-223 5-192 (202)
186 3d9a_L Light chain of hyhel10 99.9 8.9E-23 3E-27 165.1 14.9 183 27-212 4-202 (213)
187 1uct_A Immunoglobulin alpha FC 99.9 1.1E-22 3.8E-27 164.6 15.3 178 134-326 9-200 (218)
188 1oll_A NK receptor; immune sys 99.9 2.8E-22 9.7E-27 158.6 17.3 179 23-223 3-187 (188)
189 3nl4_L Antigen binding fragmen 99.9 1.6E-22 5.3E-27 163.7 16.0 180 25-207 2-198 (213)
190 3mj8_L Stimulatory hamster ant 99.9 1.3E-22 4.4E-27 164.2 15.5 174 144-319 9-208 (213)
191 1qok_A MFE-23 recombinant anti 99.9 3.4E-22 1.2E-26 168.8 18.4 196 27-223 29-267 (282)
192 1ugn_A LIR1, leukocyte immunog 99.9 2.5E-22 8.7E-27 160.4 16.4 169 146-323 15-197 (198)
193 1lk3_L 9D7 light chain; antige 99.9 1.7E-22 6E-27 163.0 15.6 179 31-212 7-201 (210)
194 3sbw_C Programmed cell death 1 99.9 5.3E-22 1.8E-26 161.6 18.6 180 142-327 8-214 (222)
195 3ry4_A Low affinity immunoglob 99.9 2.4E-22 8.2E-27 156.5 15.7 165 23-222 3-169 (170)
196 3d9a_L Light chain of hyhel10 99.9 3.9E-22 1.3E-26 161.3 17.3 176 142-319 8-208 (213)
197 4frw_A Poliovirus receptor-rel 99.9 1.1E-21 3.9E-26 159.0 19.4 176 142-323 6-210 (218)
198 2fbo_J V1V2;, variable region- 99.9 1.9E-22 6.6E-27 167.4 15.1 180 142-321 9-249 (250)
199 2gki_A Nuclease; anti-DNA anti 99.9 1.1E-21 3.7E-26 166.3 19.8 225 1-227 1-275 (291)
200 3auv_A SC-DSFV derived from th 99.9 5.9E-22 2E-26 166.8 18.0 185 23-209 11-235 (276)
201 2ghw_B Anti-SARS SCFV antibody 99.9 6.2E-22 2.1E-26 164.0 17.3 193 31-223 9-241 (247)
202 3ry4_A Low affinity immunoglob 99.9 6.2E-22 2.1E-26 154.1 16.3 154 144-322 13-169 (170)
203 2zg1_A Sialic acid-binding IG- 99.9 3E-22 1E-26 162.1 15.0 185 31-221 7-212 (214)
204 2j6e_L IGM, FAB light chain; a 99.9 4.6E-23 1.6E-27 169.4 10.2 185 24-212 20-224 (234)
205 1oll_A NK receptor; immune sys 99.9 6.4E-22 2.2E-26 156.6 16.2 164 146-323 14-187 (188)
206 1lk3_L 9D7 light chain; antige 99.9 1.2E-21 4.2E-26 158.0 17.9 173 142-316 7-204 (210)
207 3r06_A Anti-mouse CD3epsilon a 99.9 5.3E-22 1.8E-26 160.5 15.9 185 25-212 2-202 (213)
208 2ny1_B T-cell surface glycopro 99.9 2.6E-22 9E-27 158.4 13.7 173 33-226 4-181 (184)
209 3uzq_A Anti-dengue MAB 4E11; d 99.9 7.1E-22 2.4E-26 164.2 16.4 200 27-227 4-247 (253)
210 3tv3_L PGT128 light chain, IG 99.9 2.8E-22 9.4E-27 162.0 13.0 175 33-212 9-200 (211)
211 3pl6_D MBP peptide / T-cell re 99.9 1.2E-22 4.2E-27 170.3 10.6 188 23-212 25-241 (268)
212 1nkr_A P58-CL42 KIR; inhibitor 99.9 4.1E-21 1.4E-25 153.7 18.9 166 22-209 6-183 (201)
213 2pet_A Lutheran blood group gl 99.9 1E-21 3.6E-26 160.9 15.8 180 141-322 6-229 (231)
214 4f80_A Butyrophilin subfamily 99.9 4.5E-21 1.5E-25 156.5 19.1 185 32-223 12-212 (226)
215 3umt_A SCFV heavy chain and li 99.9 1.2E-21 4.1E-26 163.1 15.9 196 30-226 8-247 (256)
216 1jbj_A CD3 epsilon and gamma e 99.9 3E-22 1E-26 158.0 11.4 144 146-314 10-179 (186)
217 1hng_A CD2; T lymphocyte adhes 99.9 3.6E-22 1.2E-26 155.9 11.6 156 144-322 5-174 (176)
218 3pv7_A B7-H6, IG-like domain-c 99.9 5.1E-21 1.8E-25 158.5 19.3 180 141-322 9-224 (248)
219 1nqb_A Single-chain antibody f 99.9 1.7E-21 6E-26 161.9 16.4 195 29-224 5-233 (256)
220 1f3r_B FV antibody fragment; I 99.9 9.7E-22 3.3E-26 163.7 14.6 181 30-210 6-232 (257)
221 2p1y_A Bispecific alpha/beta T 99.9 4.9E-21 1.7E-25 157.6 18.7 182 27-210 3-222 (238)
222 3pv7_A B7-H6, IG-like domain-c 99.9 4.1E-21 1.4E-25 159.1 18.2 195 25-222 3-224 (248)
223 3sbw_C Programmed cell death 1 99.9 3.1E-21 1.1E-25 157.1 17.1 190 30-227 7-214 (222)
224 1p6f_A NKP46, natural cytotoxi 99.9 2.8E-21 9.5E-26 158.6 16.7 182 22-225 5-192 (242)
225 3juy_B 3B3 single chain varian 99.9 4.3E-21 1.5E-25 159.8 18.1 200 23-222 5-255 (256)
226 3esu_F Antibody 14B7* light ch 99.9 1.6E-21 5.3E-26 161.9 15.4 182 25-208 5-231 (250)
227 2c1o_A IGK-C protein; FAB frag 99.9 1.6E-21 5.3E-26 162.3 15.3 186 24-212 38-244 (254)
228 3s96_B 3B5H10 FAB light chain; 99.9 1.1E-21 3.7E-26 159.3 13.8 183 26-212 3-209 (218)
229 2znx_A SCFV; fluorotryptohpan, 99.9 3.7E-21 1.3E-25 158.6 17.2 182 26-209 3-222 (242)
230 1q0x_L FAB 9B1, light chain; a 99.9 7.7E-21 2.6E-25 153.6 18.7 175 142-318 7-209 (212)
231 1q0x_L FAB 9B1, light chain; a 99.9 1.7E-21 5.7E-26 157.5 14.8 179 31-212 7-204 (212)
232 1moe_A Anti-CEA MAB T84.66; an 99.9 6.1E-21 2.1E-25 157.3 18.3 181 26-208 3-219 (240)
233 1b6u_A KIR2DL3, P58 killer cel 99.9 6E-21 2.1E-25 157.8 18.0 215 133-360 6-240 (257)
234 3b5h_A Cervical EMMPRIN, HAB18 99.9 1.6E-20 5.3E-25 148.2 19.6 161 34-223 8-182 (184)
235 1hng_A CD2; T lymphocyte adhes 99.9 5.7E-22 2E-26 154.8 11.2 157 34-212 6-165 (176)
236 3r06_A Anti-mouse CD3epsilon a 99.9 7.1E-21 2.4E-25 153.9 17.8 174 142-317 8-206 (213)
237 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.9 3.7E-21 1.3E-25 160.1 16.4 185 26-212 5-235 (256)
238 2wbj_D OB TCR; transmembrane, 99.9 1E-21 3.5E-26 165.6 12.9 189 23-212 23-245 (279)
239 3s96_B 3B5H10 FAB light chain; 99.9 3.6E-21 1.2E-25 156.2 15.7 173 144-318 9-214 (218)
240 2if7_A SLAM family member 6; N 99.9 1.5E-21 5.2E-26 154.9 12.5 165 31-212 5-181 (193)
241 2pet_A Lutheran blood group gl 99.9 3.2E-21 1.1E-25 158.0 14.6 174 30-209 6-211 (231)
242 3nl4_L Antigen binding fragmen 99.9 7.9E-21 2.7E-25 153.6 16.7 165 142-308 8-198 (213)
243 2xzc_L FAB A.17 light chain; i 99.9 5.2E-21 1.8E-25 155.0 15.3 179 31-212 7-204 (216)
244 1p6f_A NKP46, natural cytotoxi 99.9 7.1E-21 2.4E-25 156.2 16.2 170 146-329 17-196 (242)
245 4i0k_A CD276 antigen; immunogl 99.9 2.7E-21 9.1E-26 157.5 13.6 177 145-328 5-210 (222)
246 3tv3_L PGT128 light chain, IG 99.9 7E-21 2.4E-25 153.7 15.9 172 144-319 9-206 (211)
247 3gkz_A Anti-methamphetamine si 99.9 2E-20 6.7E-25 155.9 19.1 196 29-224 13-249 (257)
248 1mju_H Immunoglobulin MS6-12; 99.9 8.4E-21 2.9E-25 154.8 16.3 194 30-226 6-219 (227)
249 1svz_A Immunoglobulin;, single 99.9 3.8E-21 1.3E-25 159.2 14.5 181 26-209 3-228 (247)
250 3sob_L Antibody light chain; b 99.9 1.6E-20 5.4E-25 154.5 17.9 177 142-320 31-232 (237)
251 4dzb_B Vbeta2 (MAIT T cell rec 99.9 5.2E-21 1.8E-25 158.3 14.9 186 26-212 3-220 (246)
252 4fmk_A Poliovirus receptor-rel 99.9 2.7E-20 9.2E-25 151.6 18.9 175 144-322 10-215 (225)
253 1nkr_A P58-CL42 KIR; inhibitor 99.9 4E-20 1.4E-24 147.9 19.4 156 145-311 17-184 (201)
254 4fmk_A Poliovirus receptor-rel 99.9 9.8E-21 3.4E-25 154.2 15.6 191 31-225 8-220 (225)
255 2gjj_A A21 single-chain antibo 99.9 2.3E-20 7.7E-25 155.9 17.5 185 23-209 4-239 (264)
256 2fbj_H IGA-kappa J539 FAB (hea 99.9 5.3E-20 1.8E-24 149.3 18.9 182 30-213 6-211 (220)
257 3mj6_A Junctional adhesion mol 99.9 1.4E-20 4.9E-25 157.8 15.8 179 142-326 12-239 (268)
258 2vol_A Murine IGG FC; FC, zinc 99.9 7.3E-21 2.5E-25 152.9 13.2 166 147-314 15-198 (207)
259 1dr9_A B7-1 (CD80), T lymphocy 99.9 3.5E-20 1.2E-24 148.3 17.2 168 144-320 3-197 (201)
260 4i0k_A CD276 antigen; immunogl 99.9 2.8E-21 9.5E-26 157.4 10.8 195 32-233 3-215 (222)
261 2xzc_L FAB A.17 light chain; i 99.9 4.1E-20 1.4E-24 149.7 17.5 176 142-319 7-210 (216)
262 1nfd_E H57 FAB; complex (immun 99.8 2E-21 6.9E-26 157.0 9.6 173 142-317 6-205 (212)
263 3nfj_J T cell receptor beta ch 99.8 9.8E-21 3.4E-25 156.5 13.9 185 27-212 4-219 (245)
264 2rgs_A I, IG gamma-2B heavy ch 99.8 3.7E-21 1.3E-25 155.9 11.1 167 147-315 23-207 (218)
265 1nfd_E H57 FAB; complex (immun 99.8 1.4E-21 4.7E-26 158.0 8.3 179 31-212 6-201 (212)
266 1c1e_H Catalytic antibody 1E9 99.8 2.7E-20 9.2E-25 151.1 16.0 173 143-320 8-216 (219)
267 3qib_D 2B4 beta chain; IG doma 99.8 8.9E-21 3E-25 159.1 13.5 188 23-212 26-244 (270)
268 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 4.6E-20 1.6E-24 154.5 17.6 185 23-209 14-254 (268)
269 1sy6_A T-cell surface glycopro 99.8 2.4E-21 8.3E-26 155.0 9.2 154 147-322 15-202 (204)
270 3bkj_L WO2 IGG2A FAB fragment 99.8 4.9E-20 1.7E-24 153.0 17.2 172 142-315 41-242 (252)
271 1jbj_A CD3 epsilon and gamma e 99.8 3.5E-21 1.2E-25 151.9 9.7 145 34-212 9-178 (186)
272 3eow_R Poliovirus receptor; im 99.8 4.7E-21 1.6E-25 155.8 10.8 190 31-226 6-212 (221)
273 3omz_A Human vdelta1 gamma del 99.8 2.8E-20 9.5E-25 155.1 15.7 184 25-208 3-230 (259)
274 1c1e_H Catalytic antibody 1E9 99.8 2.8E-20 9.6E-25 151.0 15.3 181 30-212 6-209 (219)
275 1dee_B IGM RF 2A2; FAB-IBP com 99.8 1.3E-19 4.4E-24 147.4 19.1 181 31-212 7-216 (223)
276 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 1.6E-20 5.4E-25 152.8 13.6 181 30-212 6-212 (222)
277 3ux9_B SCFV antibody; five hel 99.8 3.2E-20 1.1E-24 154.5 15.5 178 31-210 9-236 (256)
278 3q5y_A TCR N15 beta; IG, T cel 99.8 3.6E-20 1.2E-24 152.7 15.3 185 26-212 4-213 (240)
279 2if7_A SLAM family member 6; N 99.8 1E-19 3.6E-24 144.3 17.4 157 142-319 5-187 (193)
280 4ei6_B Vbeta16 XV19 type II na 99.8 3.4E-20 1.2E-24 153.3 15.1 186 25-212 3-219 (245)
281 3bqu_C 3H6 FAB light chain; be 99.8 3.3E-21 1.1E-25 158.1 8.8 169 143-313 31-224 (233)
282 3m8o_H Immunoglobulin A1 heavy 99.8 8.7E-20 3E-24 148.3 17.0 181 30-212 6-212 (221)
283 1hxm_B Gamma-delta T-cell rece 99.8 1.8E-19 6E-24 148.5 19.0 184 27-212 4-218 (242)
284 2zg1_A Sialic acid-binding IG- 99.8 2.2E-20 7.6E-25 151.1 13.3 164 142-321 7-212 (214)
285 1mju_H Immunoglobulin MS6-12; 99.8 2.6E-20 8.9E-25 151.9 13.8 180 142-326 7-219 (227)
286 1gsm_A Madcam-1, mucosal addre 99.8 4.7E-19 1.6E-23 139.8 20.1 167 144-317 16-198 (210)
287 1pz5_B Heavy chain of FAB (SYA 99.8 5.1E-20 1.7E-24 149.6 15.1 181 30-212 6-210 (220)
288 1dn0_B IGM-kappa cold agglutin 99.8 8.3E-19 2.8E-23 143.4 21.4 182 30-212 6-216 (232)
289 3fku_X Neutralizing antibody F 99.8 9.7E-20 3.3E-24 153.4 16.2 181 27-210 4-234 (280)
290 1pz5_B Heavy chain of FAB (SYA 99.8 6.3E-20 2.2E-24 149.0 14.1 173 143-320 8-217 (220)
291 3d9a_H Heavy chain of hyhel10 99.8 1.1E-19 3.7E-24 146.5 15.2 168 144-318 9-208 (210)
292 1nqb_A Single-chain antibody f 99.8 3.4E-19 1.2E-23 148.0 18.6 176 143-323 8-232 (256)
293 2ghw_B Anti-SARS SCFV antibody 99.8 2.5E-19 8.7E-24 148.2 17.7 175 144-323 11-241 (247)
294 3d9a_H Heavy chain of hyhel10 99.8 7.2E-20 2.4E-24 147.6 13.9 178 31-212 7-203 (210)
295 1sy6_A T-cell surface glycopro 99.8 2.3E-20 8E-25 149.3 10.9 153 36-222 15-202 (204)
296 1f3r_B FV antibody fragment; I 99.8 7.8E-20 2.7E-24 152.1 14.5 175 145-324 10-245 (257)
297 1op3_H FAB 2G12, heavy chain; 99.8 1.2E-19 4.1E-24 147.8 14.9 181 30-212 6-214 (225)
298 3uzq_A Anti-dengue MAB 4E11; d 99.8 1.6E-19 5.4E-24 150.0 15.8 182 143-329 9-249 (253)
299 3eow_R Poliovirus receptor; im 99.8 2.4E-20 8.1E-25 151.7 10.6 177 144-327 8-213 (221)
300 1ypz_F T-cell receptor gamma c 99.8 1.1E-19 3.7E-24 148.5 14.1 195 27-226 4-227 (230)
301 3bae_H WO2 IGG2A FAB fragment 99.8 3.1E-19 1.1E-23 145.7 16.8 180 31-212 7-215 (228)
302 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 1.7E-19 5.7E-24 146.8 15.0 172 144-320 9-219 (222)
303 3esu_F Antibody 14B7* light ch 99.8 7.7E-19 2.6E-23 145.6 19.1 165 142-309 11-231 (250)
304 2dru_A Chimera of CD48 antigen 99.8 1.2E-19 4E-24 142.1 13.3 158 32-212 7-170 (180)
305 3umt_A SCFV heavy chain and li 99.8 1.5E-19 5.2E-24 150.3 14.7 179 144-327 11-248 (256)
306 2znx_A SCFV; fluorotryptohpan, 99.8 8.2E-19 2.8E-23 144.6 18.6 166 142-310 8-222 (242)
307 1hnf_A CD2; T lymphocyte adhes 99.8 3.3E-19 1.1E-23 139.2 15.2 152 143-320 7-177 (182)
308 3qib_D 2B4 beta chain; IG doma 99.8 3.1E-19 1E-23 149.7 15.7 203 103-316 3-247 (270)
309 3auv_A SC-DSFV derived from th 99.8 3.7E-19 1.3E-23 149.7 15.9 182 142-326 19-256 (276)
310 1hnf_A CD2; T lymphocyte adhes 99.8 5.3E-19 1.8E-23 138.0 15.7 160 32-213 7-171 (182)
311 3gkz_A Anti-methamphetamine si 99.8 2.1E-19 7.3E-24 149.6 14.0 181 144-329 17-254 (257)
312 1dr9_A B7-1 (CD80), T lymphocy 99.8 2.3E-19 7.8E-24 143.6 13.6 176 33-218 3-195 (201)
313 2fbj_H IGA-kappa J539 FAB (hea 99.8 4E-19 1.4E-23 144.2 15.2 169 143-315 8-212 (220)
314 2p1y_A Bispecific alpha/beta T 99.8 4.4E-19 1.5E-23 145.9 15.6 166 142-311 7-222 (238)
315 3liz_H 4C3 monoclonal antibody 99.8 2.4E-19 8.1E-24 148.8 14.0 180 31-212 7-209 (253)
316 4acp_A IG gamma-1 chain C regi 99.8 3.7E-20 1.3E-24 151.3 8.9 199 109-313 1-218 (240)
317 2j6e_L IGM, FAB light chain; a 99.8 4.5E-20 1.6E-24 151.4 8.9 176 142-319 26-230 (234)
318 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 1.3E-18 4.4E-23 144.7 17.7 180 141-325 9-249 (256)
319 1dee_B IGM RF 2A2; FAB-IBP com 99.8 6.7E-19 2.3E-23 143.1 15.3 172 144-318 9-221 (223)
320 1op3_H FAB 2G12, heavy chain; 99.8 9E-19 3.1E-23 142.6 16.1 170 144-317 9-218 (225)
321 1l6x_A Immunoglobulin gamma-1 99.8 1.3E-19 4.3E-24 145.7 10.9 165 148-314 16-198 (207)
322 3juy_B 3B3 single chain varian 99.8 9.1E-19 3.1E-23 145.6 16.4 167 141-312 12-244 (256)
323 1i1c_A IGG2A, IG gamma-2A chai 99.8 1.1E-19 3.7E-24 149.0 10.6 166 147-314 29-212 (239)
324 1bec_A 14.3.D T cell antigen r 99.8 7.8E-19 2.7E-23 144.3 15.7 183 27-211 2-211 (238)
325 3to4_D NKT vbeta2 (mouse varia 99.8 4E-19 1.4E-23 147.5 14.0 181 28-211 5-218 (253)
326 1ccz_A Protein (CD58); LFA-3, 99.8 4E-19 1.4E-23 137.7 12.9 147 144-320 4-167 (171)
327 4dzb_B Vbeta2 (MAIT T cell rec 99.8 1.9E-18 6.5E-23 142.8 17.6 172 142-315 8-222 (246)
328 2rgs_A I, IG gamma-2B heavy ch 99.8 7.9E-20 2.7E-24 148.1 8.9 179 22-212 7-205 (218)
329 3bn9_D E2 FAB heavy chain; ant 99.8 9.2E-19 3.2E-23 144.9 15.3 180 30-211 6-218 (257)
330 1ccz_A Protein (CD58); LFA-3, 99.8 1.5E-19 5.3E-24 140.1 10.0 158 32-212 3-160 (171)
331 3shs_A HOC head outer capsid p 99.8 3.1E-17 1.1E-21 130.2 22.4 250 25-310 3-280 (304)
332 1gsm_A Madcam-1, mucosal addre 99.8 7.1E-18 2.4E-22 133.0 18.8 160 27-212 8-194 (210)
333 2w59_A IGY FCU3-4; immunoglobu 99.8 1.9E-19 6.4E-24 147.1 10.1 165 145-314 23-218 (231)
334 3sob_H Antibody heavy chain, l 99.8 1.4E-18 4.9E-23 144.3 15.4 178 31-212 30-240 (256)
335 2xqy_G A13-D6.3 monoclonal ant 99.8 1.8E-18 6.3E-23 143.7 15.9 181 30-212 12-214 (261)
336 3bae_H WO2 IGG2A FAB fragment 99.8 1.1E-18 3.6E-23 142.5 14.2 172 144-320 9-222 (228)
337 1qok_A MFE-23 recombinant anti 99.8 4.2E-18 1.4E-22 143.7 18.0 175 143-323 34-267 (282)
338 1moe_A Anti-CEA MAB T84.66; an 99.8 3.1E-18 1.1E-22 141.0 16.8 166 142-310 8-220 (240)
339 1dn0_B IGM-kappa cold agglutin 99.8 5.1E-18 1.7E-22 138.8 17.7 177 144-323 9-226 (232)
340 1svz_A Immunoglobulin;, single 99.8 3E-18 1E-22 141.8 16.4 166 142-310 8-228 (247)
341 2vol_A Murine IGG FC; FC, zinc 99.8 6.3E-19 2.2E-23 141.5 11.6 176 25-212 2-197 (207)
342 1c5d_H Monoclonal antibody aga 99.8 4.8E-18 1.6E-22 137.3 16.6 178 31-212 7-205 (215)
343 3ux9_B SCFV antibody; five hel 99.8 5.2E-18 1.8E-22 141.1 17.2 165 143-311 10-236 (256)
344 3nl4_H Antigen binding fragmen 99.8 8.2E-19 2.8E-23 141.9 11.9 179 30-212 5-203 (215)
345 2dru_A Chimera of CD48 antigen 99.8 3.4E-18 1.2E-22 133.7 14.5 150 142-320 6-177 (180)
346 3nfj_J T cell receptor beta ch 99.8 1.1E-17 3.9E-22 138.1 17.9 173 142-316 8-222 (245)
347 3m8o_H Immunoglobulin A1 heavy 99.8 4.3E-18 1.5E-22 138.3 14.8 169 144-315 9-214 (221)
348 1mq8_A ICAM-1, intercellular a 99.8 4.6E-18 1.6E-22 142.0 15.1 209 143-366 7-235 (291)
349 1hxm_B Gamma-delta T-cell rece 99.8 1.4E-17 4.6E-22 137.2 17.8 177 141-322 7-227 (242)
350 1oga_E TRBC1, T-cell receptor 99.8 3E-18 1E-22 142.1 13.8 184 27-212 6-218 (252)
351 2gjj_A A21 single-chain antibo 99.8 1.9E-17 6.6E-22 138.1 18.8 166 142-310 12-239 (264)
352 3q5y_A TCR N15 beta; IG, T cel 99.8 1.5E-17 5.1E-22 136.9 16.7 172 142-316 9-216 (240)
353 3pl6_D MBP peptide / T-cell re 99.8 1.9E-17 6.5E-22 138.7 17.6 173 141-316 32-244 (268)
354 3omz_A Human vdelta1 gamma del 99.8 6.8E-18 2.3E-22 140.6 14.6 166 142-310 9-231 (259)
355 3liz_H 4C3 monoclonal antibody 99.8 1.3E-18 4.4E-23 144.3 10.1 175 144-323 9-219 (253)
356 2gki_A Nuclease; anti-DNA anti 99.8 6.9E-18 2.4E-22 142.9 14.7 179 144-327 31-275 (291)
357 4ei6_B Vbeta16 XV19 type II na 99.8 3.2E-17 1.1E-21 135.4 18.0 171 142-315 9-221 (245)
358 3fku_X Neutralizing antibody F 99.8 7.8E-18 2.7E-22 141.7 14.3 183 142-330 7-256 (280)
359 2xqy_G A13-D6.3 monoclonal ant 99.8 1.4E-17 4.9E-22 138.3 15.6 172 143-319 14-220 (261)
360 3qhz_H Human monoclonal antibo 99.8 4.9E-18 1.7E-22 139.0 12.5 180 31-212 7-218 (232)
361 1c5d_H Monoclonal antibody aga 99.8 2.4E-17 8.3E-22 133.1 15.8 169 144-319 9-211 (215)
362 3n9g_H FAB fragment of MAB CR4 99.8 2.2E-17 7.5E-22 134.8 15.7 178 31-212 7-214 (230)
363 3knb_B Obscurin-like protein 1 99.8 1E-17 3.4E-22 118.5 11.5 96 224-326 12-107 (107)
364 3nl4_H Antigen binding fragmen 99.8 5.5E-18 1.9E-22 137.0 11.5 169 143-321 7-211 (215)
365 3mtr_A N-CAM-1, NCAM-1, neural 99.8 3E-17 1E-21 132.7 15.8 175 142-326 25-211 (215)
366 2v5y_A Receptor-type tyrosine- 99.8 1.1E-16 3.6E-21 153.2 22.3 273 38-350 90-383 (731)
367 3u2s_H PG9 heavy chain; greek 99.8 1.7E-17 5.8E-22 136.8 14.4 182 29-212 4-227 (248)
368 3tv3_H PGT128 heavy chain, IG 99.8 1.2E-17 4E-22 137.2 13.4 180 31-212 7-226 (239)
369 3iu4_H CHP3 FAB heavy chain; a 99.7 1.3E-17 4.5E-22 138.7 13.6 178 31-212 7-213 (263)
370 1l6x_A Immunoglobulin gamma-1 99.7 2.6E-18 8.8E-23 138.0 8.9 176 25-212 2-197 (207)
371 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 5.4E-17 1.8E-21 135.8 17.2 166 142-310 22-254 (268)
372 1i1c_A IGG2A, IG gamma-2A chai 99.7 2.3E-18 7.8E-23 141.1 8.4 178 23-212 14-211 (239)
373 3o3u_N Maltose-binding peripla 99.7 3.4E-17 1.2E-21 152.7 16.5 172 142-314 373-567 (581)
374 3bn9_D E2 FAB heavy chain; ant 99.7 1E-17 3.4E-22 138.7 11.3 172 144-319 9-225 (257)
375 3u1s_H FAB PGT145 heavy chain; 99.7 1.7E-17 5.9E-22 138.5 12.9 177 31-212 30-254 (267)
376 3mtr_A N-CAM-1, NCAM-1, neural 99.7 6.2E-17 2.1E-21 130.8 15.2 175 20-213 15-199 (215)
377 3knb_A Titin; IG-like, titin, 99.7 2.9E-17 1E-21 114.6 11.1 95 225-324 5-99 (100)
378 2aty_A Complement receptor chi 99.7 8.8E-17 3E-21 141.1 15.8 165 147-313 180-362 (376)
379 2w59_A IGY FCU3-4; immunoglobu 99.7 2.6E-17 8.8E-22 134.4 11.3 175 23-212 11-217 (231)
380 1bec_A 14.3.D T cell antigen r 99.7 2.6E-16 8.9E-21 129.2 17.3 171 142-315 6-214 (238)
381 1ypz_E T cell receptor delta, 99.7 1.6E-16 5.5E-21 127.3 15.5 179 27-212 4-198 (207)
382 2wbj_D OB TCR; transmembrane, 99.7 1.3E-16 4.3E-21 134.4 15.5 172 142-315 31-247 (279)
383 3o3u_N Maltose-binding peripla 99.7 1.5E-16 5.3E-21 148.2 16.9 174 32-212 374-566 (581)
384 3tv3_H PGT128 heavy chain, IG 99.7 8.2E-17 2.8E-21 132.2 12.6 175 144-322 9-235 (239)
385 1ypz_F T-cell receptor gamma c 99.7 3.3E-16 1.1E-20 127.7 16.0 174 141-319 7-222 (230)
386 3mlr_H Human monoclonal anti-H 99.7 2.3E-16 7.8E-21 128.4 14.0 178 31-212 7-215 (226)
387 1ow0_A IG alpha-1 chain C regi 99.7 4.1E-18 1.4E-22 137.5 3.3 168 142-313 11-200 (214)
388 2cqv_A MLCK, myosin light chai 99.7 3.1E-16 1E-20 112.8 12.7 103 224-333 6-108 (114)
389 3to4_D NKT vbeta2 (mouse varia 99.7 3.9E-16 1.3E-20 129.4 14.9 171 142-314 8-220 (253)
390 3qhz_H Human monoclonal antibo 99.7 9.3E-17 3.2E-21 131.4 10.6 174 145-322 10-227 (232)
391 1oga_E TRBC1, T-cell receptor 99.7 1E-15 3.5E-20 126.7 16.6 172 141-315 9-220 (252)
392 1iam_A ICAM-1, CD54, intercell 99.7 2.4E-15 8.3E-20 115.9 16.6 161 27-211 2-166 (185)
393 3u2s_H PG9 heavy chain; greek 99.7 2.4E-16 8.3E-21 129.9 11.5 176 143-322 7-236 (248)
394 3f8u_B Tapasin; endoplasmic re 99.7 2.2E-15 7.4E-20 129.4 16.9 183 29-212 163-390 (401)
395 3n9g_H FAB fragment of MAB CR4 99.7 4.5E-16 1.5E-20 127.0 12.2 175 144-323 9-224 (230)
396 3knb_B Obscurin-like protein 1 99.7 8.6E-16 2.9E-20 108.5 10.8 98 21-135 10-107 (107)
397 1wwb_X Protein (brain derived 99.7 1.3E-15 4.4E-20 107.1 11.7 88 238-327 14-101 (103)
398 1hxm_A Gamma-delta T-cell rece 99.6 1.7E-15 5.9E-20 122.8 13.3 181 27-211 4-198 (229)
399 3qp3_A Titin; I-SET IG-like, s 99.6 1E-15 3.4E-20 108.0 10.1 96 223-325 6-101 (103)
400 1ow0_A IG alpha-1 chain C regi 99.6 2.4E-17 8.3E-22 133.0 1.5 176 24-212 3-200 (214)
401 3iu4_H CHP3 FAB heavy chain; a 99.6 5.7E-16 1.9E-20 128.8 9.7 173 144-321 9-221 (263)
402 3kvq_A Vascular endothelial gr 99.6 3.4E-16 1.2E-20 111.5 7.0 102 218-328 3-104 (108)
403 3knb_A Titin; IG-like, titin, 99.6 1.5E-15 5E-20 106.0 9.6 95 23-132 4-98 (100)
404 2aty_A Complement receptor chi 99.6 7.1E-15 2.4E-19 128.9 16.1 176 25-212 167-362 (376)
405 3mlr_H Human monoclonal anti-H 99.6 8.4E-16 2.9E-20 125.0 9.5 172 144-320 9-222 (226)
406 4acp_A IG gamma-1 chain C regi 99.6 4.4E-16 1.5E-20 127.1 7.2 178 23-212 21-218 (240)
407 1wit_A Twitchin 18TH IGSF modu 99.6 2.5E-15 8.4E-20 103.7 9.9 89 225-322 2-92 (93)
408 2kdg_A Myotilin; immonoglobuli 99.6 3E-15 1E-19 104.9 10.3 96 224-325 4-99 (100)
409 2v5y_A Receptor-type tyrosine- 99.6 8.7E-15 3E-19 140.0 16.8 186 150-349 91-284 (731)
410 3bn3_B ICAM-5, intercellular a 99.6 7.3E-15 2.5E-19 114.1 13.2 163 25-211 3-174 (196)
411 1g1c_A Immunoglobulin-like dom 99.6 1E-14 3.5E-19 101.9 12.9 95 224-324 4-98 (99)
412 3sob_H Antibody heavy chain, l 99.6 3.1E-15 1.1E-19 124.1 11.7 173 145-322 33-249 (256)
413 3irg_B Obscurin-like protein 1 99.6 5E-15 1.7E-19 105.2 11.2 97 223-326 11-107 (107)
414 3puc_A Titin; I-SET IG-like do 99.6 9E-15 3.1E-19 102.2 12.0 94 224-324 5-98 (99)
415 2dm3_A KIAA0992 protein, palla 99.6 1.8E-15 6.2E-20 108.0 7.4 101 224-330 8-108 (110)
416 1he7_A High affinity nerve gro 99.6 7.5E-15 2.6E-19 105.2 10.3 88 239-328 14-103 (126)
417 1iam_A ICAM-1, CD54, intercell 99.6 1.2E-13 4E-18 106.5 17.7 156 143-314 7-168 (185)
418 2e7c_A Myosin-binding protein 99.6 1.2E-14 4E-19 105.1 11.6 97 222-326 18-117 (118)
419 3f8u_B Tapasin; endoplasmic re 99.6 1E-13 3.4E-18 119.2 19.0 178 142-320 165-400 (401)
420 2kkq_A Myotilin; unknown funct 99.6 1.1E-14 3.8E-19 104.7 11.1 100 224-329 14-114 (116)
421 1u2h_A APEG-1, aortic preferen 99.6 1.9E-14 6.6E-19 100.5 12.0 94 224-324 4-98 (99)
422 2yr3_A Myosin light chain kina 99.6 4E-15 1.4E-19 104.0 8.5 91 222-322 8-98 (99)
423 1ypz_E T cell receptor delta, 99.6 2.3E-14 7.9E-19 114.6 14.0 161 142-315 8-200 (207)
424 2edj_A Roundabout homolog 2; K 99.6 7.4E-15 2.5E-19 102.8 9.4 92 224-325 7-99 (100)
425 1fhg_A Telokin; immunoglobulin 99.6 1.2E-14 4E-19 110.5 11.2 106 219-330 35-140 (154)
426 3irg_A Titin; IG-like, titin, 99.6 1.9E-14 6.4E-19 100.8 11.1 95 225-324 5-99 (100)
427 2dav_A SLOW MYBP-C, myosin-bin 99.6 2.3E-14 8E-19 102.7 11.2 100 227-327 9-114 (126)
428 1wwc_A Protein (NT-3 growth fa 99.6 2E-14 6.8E-19 103.9 11.0 103 219-327 2-104 (118)
429 3shs_A HOC head outer capsid p 99.6 3.2E-13 1.1E-17 107.4 18.3 180 146-349 13-208 (304)
430 2dm2_A Palladin; beta-sandwich 99.6 7.3E-15 2.5E-19 104.8 8.1 99 225-329 8-107 (110)
431 2cry_A KIN of IRRE-like protei 99.6 7.5E-16 2.6E-20 112.2 2.2 111 215-327 4-116 (122)
432 1nct_A Titin; cell adhesion, g 99.6 7.6E-15 2.6E-19 103.7 7.1 93 224-323 13-105 (106)
433 2bk8_A Connectin, M1, titin he 99.6 9E-14 3.1E-18 96.6 12.4 89 229-324 5-94 (97)
434 2eo9_A Roundabout homolog 1; b 99.5 1.5E-14 5.3E-19 104.5 8.2 93 225-327 8-101 (118)
435 2yuz_A Myosin-binding protein 99.5 2.5E-14 8.4E-19 99.7 8.8 92 225-327 7-98 (100)
436 2ckn_A Basic fibroblast growth 99.5 2.2E-14 7.4E-19 99.3 8.2 86 225-322 9-94 (95)
437 3cx2_A Myosin-binding protein 99.5 9.5E-14 3.2E-18 98.5 11.5 97 226-323 5-107 (108)
438 3bn3_B ICAM-5, intercellular a 99.5 1.6E-13 5.5E-18 106.6 13.3 161 143-312 10-174 (196)
439 2yuz_A Myosin-binding protein 99.5 2.9E-14 9.9E-19 99.3 8.1 95 21-136 4-98 (100)
440 2cqv_A MLCK, myosin light chai 99.5 3.8E-13 1.3E-17 96.5 14.0 93 134-228 7-103 (114)
441 3u1s_H FAB PGT145 heavy chain; 99.5 6.2E-14 2.1E-18 116.9 11.0 174 144-322 32-263 (267)
442 1g1c_A Immunoglobulin-like dom 99.5 1.3E-13 4.5E-18 96.2 10.8 95 22-132 3-97 (99)
443 2kkq_A Myotilin; unknown funct 99.5 1.3E-13 4.6E-18 99.0 11.1 102 21-137 12-113 (116)
444 1gxe_A Myosin binding protein 99.5 3.4E-14 1.1E-18 105.0 7.8 87 232-323 25-138 (139)
445 2kdg_A Myotilin; immonoglobuli 99.5 8.4E-14 2.9E-18 97.4 9.5 96 23-134 4-99 (100)
446 1u2h_A APEG-1, aortic preferen 99.5 1.9E-13 6.6E-18 95.3 11.0 95 22-132 3-97 (99)
447 1waa_A Titin; metal binding pr 99.5 2.5E-13 8.5E-18 93.1 10.3 87 225-323 5-91 (93)
448 3irg_B Obscurin-like protein 1 99.5 2.8E-13 9.5E-18 96.0 10.8 98 21-135 10-107 (107)
449 2edj_A Roundabout homolog 2; K 99.5 2.6E-13 8.9E-18 94.8 10.5 96 21-135 5-100 (100)
450 2edn_A Myosin-binding protein 99.5 9.5E-14 3.3E-18 98.4 8.0 97 227-324 14-116 (118)
451 1waa_A Titin; metal binding pr 99.5 2.1E-13 7.1E-18 93.5 9.4 90 22-133 3-92 (93)
452 2eys_A NKT15; natural killer T 99.5 8.2E-13 2.8E-17 105.2 14.1 172 27-211 6-188 (210)
453 2e7c_A Myosin-binding protein 99.5 7.2E-13 2.5E-17 95.6 12.7 85 141-226 30-117 (118)
454 3bfo_A Mucosa-associated lymph 99.5 2.8E-13 9.5E-18 92.8 9.8 83 226-324 4-87 (91)
455 2dm2_A Palladin; beta-sandwich 99.5 2.2E-13 7.5E-18 97.0 9.5 101 21-136 5-105 (110)
456 3c6l_A TCR 2W20 alpha chain; T 99.2 3.6E-15 1.2E-19 115.8 0.0 171 28-205 4-182 (185)
457 2dm3_A KIAA0992 protein, palla 99.5 9.9E-14 3.4E-18 98.9 7.4 101 21-137 6-106 (110)
458 1x44_A Myosin-binding protein 99.5 3.3E-13 1.1E-17 94.8 9.9 90 228-329 10-101 (103)
459 3qp3_A Titin; I-SET IG-like, s 99.5 5.1E-13 1.7E-17 93.9 10.9 96 22-134 6-101 (103)
460 3caf_A Fibroblast growth facto 99.5 1.8E-13 6E-18 95.7 8.4 83 234-322 17-99 (100)
461 2edf_A Obscurin; beta-sandwich 99.5 1.9E-13 6.7E-18 96.0 8.5 93 225-329 8-100 (103)
462 3bfo_A Mucosa-associated lymph 99.5 3.7E-13 1.3E-17 92.2 9.7 86 23-133 2-87 (91)
463 3m45_A Cell adhesion molecule 99.5 4.6E-13 1.6E-17 95.1 10.5 104 23-135 5-108 (108)
464 3kvq_A Vascular endothelial gr 99.5 3.5E-13 1.2E-17 95.7 9.8 99 127-227 3-103 (108)
465 2dav_A SLOW MYBP-C, myosin-bin 99.5 9.7E-13 3.3E-17 94.3 12.0 104 24-135 7-114 (126)
466 2e6p_A Obscurin-like protein 1 99.5 1.8E-13 6.2E-18 96.4 8.2 93 225-329 7-102 (104)
467 2lu7_A Obscurin-like protein 1 99.5 1.8E-13 6.3E-18 91.5 7.6 78 234-323 5-82 (84)
468 2cr3_A Basic fibroblast growth 99.5 1.4E-13 4.8E-18 95.9 7.1 83 233-327 11-93 (99)
469 4f9p_D 103.2 anti-BTN3A1 antib 99.5 5.2E-12 1.8E-16 99.0 16.3 178 30-209 6-229 (254)
470 1wit_A Twitchin 18TH IGSF modu 99.5 8.2E-13 2.8E-17 90.9 10.7 87 134-222 2-92 (93)
471 3irg_A Titin; IG-like, titin, 99.4 4.8E-13 1.6E-17 93.5 9.6 95 23-132 4-98 (100)
472 3m45_A Cell adhesion molecule 99.4 7.2E-13 2.5E-17 94.0 10.6 99 223-326 4-108 (108)
473 1fhg_A Telokin; immunoglobulin 99.4 7.2E-13 2.5E-17 100.5 11.2 101 129-231 36-141 (154)
474 2eo9_A Roundabout homolog 1; b 99.4 3.3E-13 1.1E-17 97.5 8.8 97 22-137 6-102 (118)
475 1hxm_A Gamma-delta T-cell rece 99.4 3.3E-12 1.1E-16 103.5 15.6 155 142-314 8-200 (229)
476 3puc_A Titin; I-SET IG-like do 99.4 1E-12 3.5E-17 91.6 10.8 94 22-132 4-97 (99)
477 2yr3_A Myosin light chain kina 99.4 5E-13 1.7E-17 93.2 9.2 91 21-131 8-98 (99)
478 3cx2_A Myosin-binding protein 99.4 1.4E-12 4.9E-17 92.4 11.6 98 23-132 3-107 (108)
479 2v9t_A Roundabout homolog 1; s 99.4 1.6E-13 5.6E-18 98.9 6.7 100 223-323 7-108 (117)
480 3so5_A LIG-3, leucine-rich rep 99.4 1.4E-12 4.7E-17 93.2 11.5 99 222-322 7-111 (112)
481 3rgv_A YAE62 TCR A chain; TCR, 99.4 1.1E-12 3.6E-17 102.8 11.7 147 27-179 3-155 (200)
482 1gl4_B Basement membrane-speci 99.4 8.9E-13 3.1E-17 91.7 10.0 80 232-323 17-97 (98)
483 1nct_A Titin; cell adhesion, g 99.4 2.7E-13 9.3E-18 95.7 7.3 96 20-132 10-105 (106)
484 3s35_X Vascular endothelial gr 99.4 8.9E-13 3E-17 95.8 10.2 93 234-328 17-114 (122)
485 2edn_A Myosin-binding protein 99.4 8.8E-13 3E-17 93.5 9.7 106 21-134 9-117 (118)
486 2edf_A Obscurin; beta-sandwich 99.4 5.8E-13 2E-17 93.6 8.8 95 21-137 5-99 (103)
487 2yuv_A Myosin-binding protein 99.4 1.8E-12 6.1E-17 90.5 11.0 91 225-327 7-98 (100)
488 2yuv_A Myosin-binding protein 99.4 2.5E-12 8.7E-17 89.7 11.7 93 22-136 5-98 (100)
489 2lvc_A Obscurin-like protein 1 99.4 4.1E-13 1.4E-17 91.3 7.3 85 225-321 4-90 (91)
490 1x44_A Myosin-binding protein 99.4 4.8E-13 1.6E-17 94.0 7.9 92 23-136 6-99 (103)
491 2edh_A Obscurin; structural ge 99.4 1E-12 3.4E-17 94.1 9.8 100 215-327 8-108 (113)
492 1zxq_A ICAM-2, intercellular a 99.4 4.3E-12 1.5E-16 97.5 13.6 160 25-210 3-172 (192)
493 2ckn_A Basic fibroblast growth 99.4 1.1E-12 3.6E-17 90.6 9.4 80 141-222 15-94 (95)
494 2eny_A Obscurin; beta-sandwich 99.4 3.3E-13 1.1E-17 94.8 6.9 93 226-329 9-102 (104)
495 2nw2_A ELS4 TCR alpha chain; T 99.4 4.8E-12 1.7E-16 100.0 14.1 173 31-211 6-182 (200)
496 4hwu_A Fibroblast growth facto 99.4 7.7E-13 2.6E-17 91.4 8.2 81 233-326 9-89 (95)
497 2edk_A Myosin-binding protein 99.4 1.9E-13 6.6E-18 95.6 5.1 97 21-135 5-101 (101)
498 1zox_A CLM-1; IG-superfamily, 99.4 2.9E-12 9.9E-17 91.6 11.3 104 31-135 8-112 (113)
499 1wwb_X Protein (brain derived 99.4 1.3E-12 4.3E-17 91.6 9.2 78 148-226 14-100 (103)
500 2eny_A Obscurin; beta-sandwich 99.4 6.7E-13 2.3E-17 93.2 7.7 96 20-136 4-100 (104)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.8e-45 Score=342.16 Aligned_cols=338 Identities=20% Similarity=0.341 Sum_probs=273.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|++++|.|.+.+.|.+.++|+|++..+.. +.++.... .....+|.|.+
T Consensus 196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~--------------~~~~~~~~--~~~~~~L~i~~ 259 (570)
T 3b43_A 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--------------GGNYKMTL--VENTATLTVLK 259 (570)
T ss_dssp CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCT--------------TSSEEEEE--ETTEEEEEESS
T ss_pred CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcC--------------CCcEEEEE--ECCEEEEEEcc
Confidence 466777777777789999999999999988899999998865421 12222211 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
++.+|+|.|+|.+.|..+ ..+..+.|.|..+|.+.........+.+|+.+.|.|.+.|.|.+.+.|+|++..+......
T Consensus 260 v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~ 338 (570)
T 3b43_A 260 VTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338 (570)
T ss_dssp BCGGGCEEEEEEEEETTE-EEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSE
T ss_pred cCcccCEEEEEEEECCCC-cEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcE
Confidence 999999999999998654 4467788889888877655444455789999999999999999999999999988765543
Q ss_pred EE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeE
Q psy8823 183 IY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV 258 (386)
Q Consensus 183 ~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 258 (386)
.. ....|.|.+++.+|+|.|+|.+.|..+. ......|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.
T Consensus 339 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~ 417 (570)
T 3b43_A 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 417 (570)
T ss_dssp EEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCE
T ss_pred EEEEECCEEEEEECCCCcccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEE
Confidence 22 2457999999999999999999999887 567788999999998877777788899999999999999999999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceee
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELL 338 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~ 338 (386)
|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.....+....+.
T Consensus 418 W~k~g~~--l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~ 490 (570)
T 3b43_A 418 WHKDKRE--LRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490 (570)
T ss_dssp EEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCB
T ss_pred EEECCEE--CcCCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceec
Confidence 9999988 555555443221 124679999999999999999999999999999999998777665566677788
Q ss_pred cCcceeeeEEecCCC---CCcccccceee-ecccc--------eeeeeeeeecccccCC
Q psy8823 339 PLRNVNMAVIFAEQP---TSWEPQRKQLN-CSSLL--------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 339 ~~~~~~~~c~~~~~p---~~W~~~~~~l~-~~~~~--------~~~~i~~v~~~d~~~~ 385 (386)
.|+.+.|.|.+.|.| ++|++|+..+. .+.+. ..|.|..+..+|++.|
T Consensus 491 ~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 549 (570)
T 3b43_A 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKY 549 (570)
T ss_dssp TTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEE
T ss_pred CCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEE
Confidence 999999999998887 79999986553 33322 2699999999999865
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.3e-44 Score=331.84 Aligned_cols=337 Identities=20% Similarity=0.372 Sum_probs=264.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+.+..+.+|+++.|.|.+.+.+.+.|.|+|++..+.. +.++.... .....+|.|.+
T Consensus 100 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~--------------~~~~~~~~--~~~~~~L~i~~ 163 (570)
T 3b43_A 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD--------------DANLQTSF--IHNVATLQILQ 163 (570)
T ss_dssp CCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCC--------------CSSEEEEE--ETTEEEEEESS
T ss_pred CCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcC--------------CCCEEEEE--ECCEEEEEECc
Confidence 356666666677788999999999999988899999998865421 11111111 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe---cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
++.+|+|.|+|.+.|..+. .+....|.|. .+|.+... +....+.+|+.++|.|.+.|.|++.++|+|++..+...
T Consensus 164 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~pp~~~~~-p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~ 241 (570)
T 3b43_A 164 TDQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241 (570)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCEEEEC-CCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTT
T ss_pred CChHHCEEEEEEEEeCCcE-EEEEEEEEEcCCCCCCccccC-CceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCC
Confidence 9999999999999987543 3444555554 24544433 33456788999999999999999999999999988665
Q ss_pred CceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC-CcccccCCCcEEEEEEEEecCC
Q psy8823 180 GGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK-PRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 180 ~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
..... ....|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+.... ....+.+|+.+.|.|.+.|.|.
T Consensus 242 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~ 320 (570)
T 3b43_A 242 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320 (570)
T ss_dssp SSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEE-EEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSS
T ss_pred CcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCc-EEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCC
Confidence 44322 2468999999999999999999998886 5678889999999876543 3445778999999999999999
Q ss_pred CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCC
Q psy8823 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334 (386)
Q Consensus 255 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 334 (386)
+.+.|++++.. +.....+..... .....|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....+..
T Consensus 321 p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~ 393 (570)
T 3b43_A 321 IKVLWYKDETE--IQESSKFRMSFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP 393 (570)
T ss_dssp CEEEEEETTEE--CCCSSSEEEEEE-----TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCC
T ss_pred CEEEEeECCEE--CCCCCcEEEEEE-----CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCc
Confidence 99999999988 544444433211 13567999999999999999999999999999999999988776666666
Q ss_pred ceeecCcceeeeEEecCCC---CCcccccceeeecccce--------eeeeeeeecccccCC
Q psy8823 335 SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY--------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~--------~~~i~~v~~~d~~~~ 385 (386)
..+..|+.+.|.|.+.|.| ++|++|+..+..+.++. .|.|..|..+|++.|
T Consensus 394 ~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 455 (570)
T 3b43_A 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455 (570)
T ss_dssp EEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred eeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEE
Confidence 7788999999999999888 79999999988776542 588999999999865
No 3
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=2.3e-42 Score=308.56 Aligned_cols=338 Identities=21% Similarity=0.346 Sum_probs=259.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
......+...|.+..+.+|++++|.|.+.+ .+.+.+.|+|++..+... .+.+.....+ ++|.
T Consensus 18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~------------~~~~~~~~~~-----~~l~ 80 (403)
T 3laf_A 18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG------------MDDRKQQLPN-----GSLL 80 (403)
T ss_dssp -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTT------------SCTTEEECTT-----SCEE
T ss_pred CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccC------------CcccEEEecC-----CcEE
Confidence 444567888899999999999999999986 466779999988654211 0112222211 2566
Q ss_pred Eccc-----CCCCCeEEEEEeEEcc-cceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC
Q psy8823 100 VKDI-----QETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN 173 (386)
Q Consensus 100 i~~~-----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~ 173 (386)
|.++ +.+|+|.|+|.+.+.. +...+..+.+.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus 81 i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~-~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~ 159 (403)
T 3laf_A 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ-TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQ 159 (403)
T ss_dssp ECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSC-CCCEEEETTSCEEECCCEECSSCCEEEEEESS
T ss_pred EeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccC-CCcEEEEcCCeEEEEEEEcccCCCeEEEEECC
Confidence 7666 7789999999998643 334456678888877766543 45678899999999999999999999999999
Q ss_pred eeeCCCC---c-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce------EeeCCCcccccCCCcE
Q psy8823 174 NAILPTG---G-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV------ITVPKPRLGQALQYDM 243 (386)
Q Consensus 174 ~~~~~~~---~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~ 243 (386)
..+.... . .......|.|.+++.+|+|.|+|.+.|..+......+.+.|...|. +...+....+.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~ 239 (403)
T 3laf_A 160 QDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239 (403)
T ss_dssp SBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCE
T ss_pred EeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcE
Confidence 8774321 1 1123568999999999999999999998776555667787776653 3334555667889999
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|.+.+.|.+.+.|++++..+.... ..+.. .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 240 ~l~C~~~~~p~~~~~W~~~~~~~~~~~-~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 310 (403)
T 3laf_A 240 VLECCVSGYPPPSFTWLRGEEVIQLRS-KKYSL--------LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310 (403)
T ss_dssp EECCEEEEESCCEEEEEETTEECCCSS-SSEEE--------ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEECCeeccCCC-ceEEE--------CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999999999999998732211 12111 134679999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecccccCC
Q psy8823 324 IIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 324 ~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~d~~~~ 385 (386)
.+|.....+....+..|+.++|.|.+.+.| ++|++++..+..+.+.. .|.|..+..+|++.|
T Consensus 311 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 380 (403)
T 3laf_A 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFY 380 (403)
T ss_dssp EEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEE
T ss_pred CCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEE
Confidence 877655555667788899999999998877 68999999988776543 599999999998765
No 4
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=9.5e-43 Score=308.48 Aligned_cols=335 Identities=19% Similarity=0.257 Sum_probs=249.9
Q ss_pred cCCeeeeeccceee---ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIK---DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v---~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..|.|...|....+ .+|+.+.|.|.+.+.|.+.|+|+|++..+... .+.++... +++|.
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~------------~~~~~~~~------~g~l~ 65 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG------------MDFRYSVV------DGSLL 65 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----------------CEEEE------TTEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCC------------CCccEEEE------CCEEE
Confidence 45778888877765 58999999999999999999999988654210 11122221 12577
Q ss_pred Eccc-CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeC
Q psy8823 100 VKDI-QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~ 177 (386)
|.+. +.+|+|.|+|.+.|..+...+....+.+...+.+.......+.+.+|+.+.|.|... +.+.+.+.|++++..+.
T Consensus 66 i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~ 145 (384)
T 3kld_A 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY 145 (384)
T ss_dssp EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC
T ss_pred EcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE
Confidence 7775 789999999999987766555566666655444443344557788999999999763 56778999999998765
Q ss_pred CCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCcee--eeEEEEEE-------ecceEee-CCCcccccCCCcEEE
Q psy8823 178 PTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTR--RNIAVEVE-------FAPVITV-PKPRLGQALQYDMDL 245 (386)
Q Consensus 178 ~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~l 245 (386)
....... ....|.|.+++.+|+|.|+|.+.|..+.... ....+.+. +.|.+.. .+....+.+|+.+.|
T Consensus 146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l 225 (384)
T 3kld_A 146 QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225 (384)
T ss_dssp CSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEE
T ss_pred eeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEE
Confidence 4443332 3457999999999999999999998765221 11122221 2344333 344566788999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.+.|++++... +....... ...+.|.|.++..+|+|.|+|.|.|..|....+..|.|...
T Consensus 226 ~C~~~g~P~p~i~W~k~~~~~-~~~~~~~~---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~ 295 (384)
T 3kld_A 226 ECFALGNPVPTILWRRADGKP-IARKARRH---------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 295 (384)
T ss_dssp EEEEEEESCCEEEEEETTCCC-CCTTCEEC---------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEeecCCCcEEEEeCCCcc-ccccceec---------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC
Confidence 999999999999999965431 22211110 13567999999999999999999999999999999999888
Q ss_pred CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 326 PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
|..........+..|+.+.|.|.+.|.| ++|++||..+..+.++. .|.|..|..+|++.|
T Consensus 296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y 362 (384)
T 3kld_A 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMY 362 (384)
T ss_dssp EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEE
T ss_pred CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEE
Confidence 7765556667788899999999998887 79999999998776654 699999999999876
No 5
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=2.4e-40 Score=281.17 Aligned_cols=277 Identities=23% Similarity=0.409 Sum_probs=228.0
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|....+.+|++++|.|.+.+.+.+.+.|++++..+.. +.++.... .....+|.|.
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~--------------~~~~~~~~--~~~~~~L~i~ 66 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--------------GGNYKMTL--VENTATLTVL 66 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCS--------------SSSEEEEE--ETTEEEEEES
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcC--------------CCcEEEEE--cCCEEEEEEe
Confidence 4688999999999999999999999999888889999998865421 12222221 1235689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 67 ~v~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 145 (284)
T 2rik_A 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 145 (284)
T ss_dssp SCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSS
T ss_pred cCCcccCEEEEEEEEECCc-eEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCc
Confidence 9999999999999997654 357788899999988776656667789999999999999999999999999988866544
Q ss_pred eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 182 SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 182 ~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
... ....|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|+|.+.+
T Consensus 146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v 224 (284)
T 2rik_A 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224 (284)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred EEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEE
Confidence 322 2467999999999999999999998886 56788999999998877777777889999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|++++.. +....++..... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 225 ~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 225 SWHKDKRE--LRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEETTEE--ECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEECCEE--CcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99999988 555554443221 124689999999999999999999999999999998874
No 6
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=303.73 Aligned_cols=332 Identities=14% Similarity=0.211 Sum_probs=222.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...+.+..|.+|+++.|.|.+.+.|.+.+.|++++..+..... ...+. ....+|.|.+++.
T Consensus 50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~--------~~~~~---------~~~~sL~I~~v~~ 112 (423)
T 3qs7_E 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH--------FDLQN---------RGVVSMVILKMTE 112 (423)
T ss_dssp ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB--------C--------------CEEEEEESSCCS
T ss_pred cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce--------ecccc---------ceEEEEEEeecCc
Confidence 355556677799999999999999988899999998754321100 00011 1223799999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR 185 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~ 185 (386)
+|+|.|+|.+.|..+ ..+..+.|.|..+|.... .....+..|+.+.|.|.+.|.|.|.++|++++.......... .
T Consensus 113 ~D~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~~~~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~-~ 188 (423)
T 3qs7_E 113 TQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTL--RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES-P 188 (423)
T ss_dssp SSCSEEEEEEEC--C-EEEEEEEEEEC-----CE--EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------
T ss_pred ccCEEEEEEEEcCCC-cEEEEEEEEEecCccccc--cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccc-c
Confidence 999999999997644 446677888886665422 223345678889999999999999999999887542211100 0
Q ss_pred eeEEEE-CCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCC
Q psy8823 186 GSILKI-PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKED 263 (386)
Q Consensus 186 ~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~ 263 (386)
...... ..+...|+|.|+|.|.|..|......+.|.|..+|.. ++....+.+|+.+.|.|.+.| .|.|.+.|++++
T Consensus 189 ~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g 266 (423)
T 3qs7_E 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN 266 (423)
T ss_dssp -CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESS
T ss_pred ccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECC
Confidence 000000 0115789999999999998875555577777766654 344567788999999999999 677899999999
Q ss_pred eeeeeecCceeEEeeeeec-CceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecC
Q psy8823 264 TQQVLTNNQHYSISHFATA-DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPL 340 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~ 340 (386)
.. +.....+........ .......|.|.++..+|+|.|+|.|.|. ...++.|.|...|.... ......+..|
T Consensus 267 ~~--l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G 341 (423)
T 3qs7_E 267 KA--LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQY 341 (423)
T ss_dssp SB--CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTT
T ss_pred EE--ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCC
Confidence 87 433322221111111 1234567999999999999999999999 67778888876654321 1234566788
Q ss_pred cceeeeEEecCCC---CCcccccceeeeccc----ceeeeeeeeecccccCC
Q psy8823 341 RNVNMAVIFAEQP---TSWEPQRKQLNCSSL----LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 341 ~~~~~~c~~~~~p---~~W~~~~~~l~~~~~----~~~~~i~~v~~~d~~~~ 385 (386)
+.+.|.|.+.|.| ++|++||..|..+.+ ...+.+..++.+|++.|
T Consensus 342 ~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~Y 393 (423)
T 3qs7_E 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEY 393 (423)
T ss_dssp CCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCE
T ss_pred CeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEE
Confidence 9999999998888 799999999988752 22333377788898876
No 7
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=8.6e-42 Score=302.57 Aligned_cols=332 Identities=18% Similarity=0.237 Sum_probs=256.0
Q ss_pred cCCeeeeeccceee---ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIK---DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v---~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+|.|...|.+..+ .+|+.++|.|.+.+.|.+.+.|++++..+... .+.++... +++|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~------------~~~~~~~~------~~~L~ 64 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG------------PDSRYRLV------AGDLV 64 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS------------TTSSEEEE------TTEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcC------------CCccEEee------CCeEE
Confidence 46888888888776 78999999999998888999999988654211 11223222 12799
Q ss_pred EcccCC-CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 100 VKDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
|.++.. +|+|.|+|.+.|..+...+..+.|.|...|.+.........+.+|+.++|.|.+ .+.|.+.+.|++++..+.
T Consensus 65 i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~ 144 (382)
T 1cs6_A 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF 144 (382)
T ss_dssp EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred EecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence 999997 999999999998766555556777776666555444566789999999999996 567889999999987643
Q ss_pred C--CCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCce----eeeEEEEEE------ecceEeeC-CCcccccCCCc
Q psy8823 178 P--TGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGT----RRNIAVEVE------FAPVITVP-KPRLGQALQYD 242 (386)
Q Consensus 178 ~--~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~ 242 (386)
. ...... ....|.|.+++.+|+|.|+|.+.|..+... +..+.+.+. ++|.+... +....+.+|+.
T Consensus 145 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~ 224 (382)
T 1cs6_A 145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224 (382)
T ss_dssp CCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred cccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence 2 111111 236799999999999999999998764321 223444432 35555443 44667889999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.+.+.|++++.. +... .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 225 v~l~C~~~g~p~~~i~W~~~~~~--~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 291 (382)
T 1cs6_A 225 VTLECFAFGNPVPQIKWRKLDGS--QTSK-----------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 291 (382)
T ss_dssp EEEECEEEEESCCEEEEEECCSC--CSCC-----------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEccCCCCEEEEEECCcc--cccE-----------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999999998876 3221 1124678999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 323 SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
...|.....+....+..|+.++|.|.+.|.| ++|+++|..+..+.++. .|.|..|..+|+..|
T Consensus 292 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 361 (382)
T 1cs6_A 292 HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY 361 (382)
T ss_dssp EEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEE
T ss_pred ecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEE
Confidence 9887765556667888999999999998877 79999999998876654 699999999999865
No 8
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=3.2e-42 Score=307.66 Aligned_cols=339 Identities=20% Similarity=0.338 Sum_probs=256.0
Q ss_pred cccCCeeeee-ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYI-SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
...+|.+... +....+.+|++++|.|.+.+.|.+.+.|+|++..+... .+.++.... .+++|.
T Consensus 13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------------~~~~~~~~~----~~~~l~ 76 (404)
T 3p3y_A 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIA------------KDPRVSMRR----RSGTLV 76 (404)
T ss_dssp CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGG------------GCSSCBCCS----SSCCCB
T ss_pred ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeee------------cCCcceEec----CCceEE
Confidence 3457778765 56677999999999999998888999999988654211 011111111 122444
Q ss_pred Ec----ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCe
Q psy8823 100 VK----DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENN 174 (386)
Q Consensus 100 i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~ 174 (386)
|. +++.+|+|.|+|.+.|..+...+..+.|.|..+|...........+.+|+.++|.|.+ .+.|.+.+.|++++.
T Consensus 77 i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~ 156 (404)
T 3p3y_A 77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM 156 (404)
T ss_dssp CCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred EEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence 43 8889999999999998766666678889998888766555556789999999999999 788899999999876
Q ss_pred eeCCCCceE--EeeeEEEECCCCCCC-CeEEEEEEecCCCCce--eeeEEEEEEecce-------EeeCC---CcccccC
Q psy8823 175 AILPTGGSI--YRGSILKIPQITKED-RGTYYCVAENGVGKGT--RRNIAVEVEFAPV-------ITVPK---PRLGQAL 239 (386)
Q Consensus 175 ~~~~~~~~~--~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~--~~~~~l~v~~~p~-------~~~~~---~~~~~~~ 239 (386)
......... ..++.|.|.++..+| +|.|+|.+.|..+... ...+.+.+...+. +..+. ....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~ 236 (404)
T 3p3y_A 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR 236 (404)
T ss_dssp CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence 544333322 235679999999999 5999999999776532 2335555544322 22111 1234678
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|+|.+.+.|++++.. +........ .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 237 G~~v~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 306 (404)
T 3p3y_A 237 GMDLLLECIASGVPTPDIAWYKKGGD--LPSDKAKFE--------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306 (404)
T ss_dssp TSCEEEECCBCCSSCCEEEEEETTBC--CCTTTEEEE--------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEEEECCCCCCcEEEEECCEE--CCCCccccc--------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEE
Confidence 99999999999999999999999987 433322111 13568999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccc-------eeeeeeeeecccccCC
Q psy8823 320 LFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL-------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 320 l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~-------~~~~i~~v~~~d~~~~ 385 (386)
|.|...|.....+....+..|+.++|.|.+.|.| ++|++||..+..+... ..|.|..++.+|+..|
T Consensus 307 l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 382 (404)
T 3p3y_A 307 VRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVY 382 (404)
T ss_dssp EEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEE
T ss_pred EEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEE
Confidence 9999887655555667788899999999998887 7999999998766421 1699999999999865
No 9
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.7e-41 Score=313.01 Aligned_cols=328 Identities=15% Similarity=0.185 Sum_probs=249.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++..+. . .....+|.|.+
T Consensus 35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------------------~------~~~~~~L~I~~ 86 (524)
T 2ec8_A 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------------------N------ENKQNEWITEK 86 (524)
T ss_dssp CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------------------E------EECSSEEEESS
T ss_pred CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------------------c------cCccceEEEcc
Confidence 3455555666777999999999999875 899999886430 0 01223899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE-cCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR-ENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.+ + .+..+.|.|..+|... ..+....+.+|+.++|.|.+.+.+.+.++|++ ++..+.....
T Consensus 87 ~~~~D~G~Y~C~a~n--g--~~~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~ 161 (524)
T 2ec8_A 87 AEATNTGKYTCTNKH--G--LSNSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161 (524)
T ss_dssp CCSTTCEEEEEEETT--S--CEEEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCE
T ss_pred cchhhCEEEEEeecC--C--cceEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCc
Confidence 999999999999976 2 2677888888776555 34455678899999999999887778999998 6666544333
Q ss_pred eEE-eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 182 SIY-RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
... ....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+
T Consensus 162 ~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p 241 (524)
T 2ec8_A 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSS 241 (524)
T ss_dssp EEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTT
T ss_pred eeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCc
Confidence 322 3568999999999999 99999999876655567888886 67788777777788999999999999999988
Q ss_pred e-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC---
Q psy8823 256 A-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ--- 331 (386)
Q Consensus 256 ~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~--- 331 (386)
. +.|++++..+.+......... ..........|.|.++..+|+|.|+|.|.|..|....++.|.|...|.....
T Consensus 242 ~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~ 319 (524)
T 2ec8_A 242 VYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI 319 (524)
T ss_dssp CEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESS
T ss_pred EEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCC
Confidence 6 999999977211111111111 1112235788999999999999999999999999999999999876653322
Q ss_pred CCCceeecCcceeeeEEecCCC----CCcccccceeeeccc-------------ceeeeeeeeecccccCC
Q psy8823 332 TQPSELLPLRNVNMAVIFAEQP----TSWEPQRKQLNCSSL-------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~~~l~~~~~-------------~~~~~i~~v~~~d~~~~ 385 (386)
.....+..|+.++|.|.+.+.| ++|++++..+..+.. ...|.|..++.+|++.|
T Consensus 320 ~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 390 (524)
T 2ec8_A 320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTY 390 (524)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEE
T ss_pred CceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEE
Confidence 2346788999999999997776 689999999887651 23799999999999865
No 10
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=302.25 Aligned_cols=330 Identities=14% Similarity=0.201 Sum_probs=225.8
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+.+.+..|.+|++++|.|.+.+.+...+.|++++..+...... ..+.+ +..+|.|.+++.+|+
T Consensus 53 ~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~--------~~~~r---------~~~SL~I~~v~~~D~ 115 (527)
T 3qs9_E 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF--------DLQNR---------GVVSMVILKMTETQA 115 (527)
T ss_dssp ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------------CEEEEEESSCCSSSC
T ss_pred eeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCccccc--------CCCcc---------eEEEEEECcCChhhC
Confidence 3344666999999999999998888899999987643211100 01111 223799999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI 188 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 188 (386)
|.|+|.+.+..+ .....+.|.|. |..............|+.+.|.|.+.|.|.|.++|++++...............
T Consensus 116 G~Y~C~~~n~~~-~~~~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~ 192 (527)
T 3qs9_E 116 GEYLLFIQSEAT-NYTILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192 (527)
T ss_dssp SEEEEEEEC--C-EEEEEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEE
T ss_pred eeEEEEEEeccc-cEEEEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEE
Confidence 999999986543 23344445544 322222223344566888899999999999999999988765322111111112
Q ss_pred EEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeee
Q psy8823 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQV 267 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~ 267 (386)
.....+...|+|.|+|.|.|..+......+.|.|..+|.+ ++....+.+|+.+.|.|.+. |.|.+.++|++++..
T Consensus 193 ~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~-- 268 (527)
T 3qs9_E 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA-- 268 (527)
T ss_dssp ECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC--
T ss_pred EeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE--
Confidence 2233455789999999999998875555678888777765 45567788999999999996 899999999999987
Q ss_pred eecCceeEEeeeeecC-ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecCccee
Q psy8823 268 LTNNQHYSISHFATAD-EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPLRNVN 344 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~~~ 344 (386)
+.....+......... ......|.|.++..+|+|.|+|.|.|. ...++.|.|...|.... ......+..|+.+.
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~ 345 (527)
T 3qs9_E 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345 (527)
T ss_dssp CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCC
T ss_pred CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEE
Confidence 4443333222222111 224567999999999999999999998 67777888776654222 22335677889999
Q ss_pred eeEEecCCC---CCcccccceeeecccc----eeeeeeeeecccccCC
Q psy8823 345 MAVIFAEQP---TSWEPQRKQLNCSSLL----YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 345 ~~c~~~~~p---~~W~~~~~~l~~~~~~----~~~~i~~v~~~d~~~~ 385 (386)
|.|.+.|.| ++|++||+.|..+.++ ..|.|..|+++|++.|
T Consensus 346 L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y 393 (527)
T 3qs9_E 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEY 393 (527)
T ss_dssp EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCE
T ss_pred EEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEE
Confidence 999998887 6999999999877653 2799999999999876
No 11
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=7.5e-41 Score=297.19 Aligned_cols=333 Identities=16% Similarity=0.239 Sum_probs=245.7
Q ss_pred cCCeeeeecccee-eecCCcEEEEEEEeeCCCCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQI-KDIGGTVELKCSVQYAQDYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~-v~~G~~v~L~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.|...|...+ +.+|+.++|.|.+.+.|.+.|.|++ ++..+... .++.... .+++|.|
T Consensus 2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~--------------~~~~~~~----~~~~L~i 63 (388)
T 2v5m_A 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV--------------PGLRQIS----SDGKLVF 63 (388)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCB--------------TTTBEEC----STTEEEE
T ss_pred CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccC--------------CCceEEc----CCceEEe
Confidence 4678888877644 7899999999999988999999999 55443110 1111111 1237999
Q ss_pred cccCCCC------CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEE
Q psy8823 101 KDIQETD------AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRR 171 (386)
Q Consensus 101 ~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~ 171 (386)
.+++.+| +|.|+|.+.|..+...+..+.|.+..+|.+... .....+.+|+.++|.|.+.+.++ +.+.|++
T Consensus 64 ~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~ 142 (388)
T 2v5m_A 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142 (388)
T ss_dssp CCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred cccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence 9999987 999999999876655566778888777765543 34567889999999999977653 6899999
Q ss_pred cCeeeCCCC-----c-eEEeeeEEEECCCCCCCC-eEEEEEEecCCCCceee---eEEEEEEec-----ceEe-eCCCcc
Q psy8823 172 ENNAILPTG-----G-SIYRGSILKIPQITKEDR-GTYYCVAENGVGKGTRR---NIAVEVEFA-----PVIT-VPKPRL 235 (386)
Q Consensus 172 ~~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~-~~~~~~ 235 (386)
++..+.... . .......|.|.+++.+|+ |.|+|.+.|..+..... ...+.|..+ |.+. ......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~ 222 (388)
T 2v5m_A 143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222 (388)
T ss_dssp TTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred CCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence 987763221 1 122356799999999999 99999999875432221 134555543 2211 112234
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeee----eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQV----LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.+.+|+.+.|.|.+.|+|.+.+.|++++.... .....++. .....|.|.++..+|+|.|+|.|.|..
T Consensus 223 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 293 (388)
T 2v5m_A 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---------QVSGTLIIKDAVVEDSGKYLCVVNNSV 293 (388)
T ss_dssp EEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE---------EETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee---------cccCEEEECcCCHHHCeEEEEEEecCC
Confidence 56789999999999999999999999754311 11111111 135689999999999999999999999
Q ss_pred CceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 312 GTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 312 g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|..+.++.|.|..+|.....+....+..|+.++|.|.+.|.| ++|++||..+..+. ..|.|..|..+|++.|
T Consensus 294 g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~--~~L~i~~v~~~d~G~Y 368 (388)
T 2v5m_A 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--SVLRIESVKKEDKGMY 368 (388)
T ss_dssp CEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS--SEEEESSCCGGGCEEE
T ss_pred CceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC--CEEEEecCChhhCEEE
Confidence 999999999998776544344456778899999999998877 79999999987654 3699999999999865
No 12
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=9.1e-41 Score=297.38 Aligned_cols=336 Identities=17% Similarity=0.221 Sum_probs=243.9
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.|...|....+.+|+.++|.|.+.+ .+.+.+.|++++..+.... .++... ..+++|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~~~~----~~~~~L~i 66 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-------------HNAALR----KDEGSLVF 66 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTT-------------TTEEEC----TTSCCEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCccccc-------------ceEEEe----cCCceEEE
Confidence 46789999998889999999999999998 7888999999887652210 011111 12337999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
.+++.+|+|.|+|.+.+..+...+..+.|.|.. .|.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++....
T Consensus 67 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~---~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~ 143 (395)
T 1bih_A 67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA---KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143 (395)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC---EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred ecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc---CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcC
Confidence 999999999999999987655444445555432 2322 1234557799999999996 889999999999862111
Q ss_pred C-------CCc-eEEeeeEEEECCCCCCCCe---EEEEEEecCCCCceeeeE--EEEEE----------ecceEeeCCCc
Q psy8823 178 P-------TGG-SIYRGSILKIPQITKEDRG---TYYCVAENGVGKGTRRNI--AVEVE----------FAPVITVPKPR 234 (386)
Q Consensus 178 ~-------~~~-~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~--~l~v~----------~~p~~~~~~~~ 234 (386)
. ... .....+.|.|.+++.+|+| .|+|.+.|..+....... .+.+. ..|.+ .+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~ 221 (395)
T 1bih_A 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKD 221 (395)
T ss_dssp GGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCS
T ss_pred cccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCc
Confidence 1 111 1123457999999999999 999999998776322111 11111 12222 2345
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..+.+|+.+.|.|.+.|.|.+.+.|++++..+......++.. ........|.|.++..+|+|.|+|.|.|..|..
T Consensus 222 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 296 (395)
T 1bih_A 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR-----HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296 (395)
T ss_dssp EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES-----CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred eEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE-----EecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence 667889999999999999999999999998732222222211 111123479999999999999999999999987
Q ss_pred ee-EEEEEEEecCCCCCCCCC-ceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 315 EK-TVELFESIIPVCPPQTQP-SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 315 ~~-~~~l~v~~~p~~~~~~~~-~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
.. ++.|.|..+|.....+.. ..+..|+.++|.|.+.|.| ++|+++|..+..+ ++. .|.|..++.+|++.|
T Consensus 297 ~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y 375 (395)
T 1bih_A 297 QKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYY 375 (395)
T ss_dssp EEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEE
T ss_pred eEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEEE
Confidence 66 899999888765544444 6778999999999998877 7999999998755 222 799999999999765
No 13
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=1.4e-38 Score=271.21 Aligned_cols=277 Identities=19% Similarity=0.386 Sum_probs=216.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
++.+.+.|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ...++.... ......+|.|.
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-------------~~~~~~~~~-~~~~~~~L~i~ 67 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------------NQQRISVVW-NDDDSSTLTIY 67 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-------------SCSSEEEEE-EETTEEEEEEC
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-------------CCceEEEEE-cCCCeEEEEEe
Confidence 67889999999999999999999998766 68899999 5543311 111222211 11245689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~ 146 (291)
T 1qz1_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (291)
T ss_dssp SCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEEC-CSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCC
T ss_pred cCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCC-CCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCC
Confidence 999999999999999877666678888999888876654 3456788999999999999999999999999987654322
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCC-CCceeeeEEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCCC
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGV-GKGTRRNIAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
....+..|.|.+++.+|+|.|+|.+.|.. +......+.+.|..+|.+..... ...+..|+.+.|.|.+.|.|.|
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p 226 (291)
T 1qz1_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226 (291)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC
T ss_pred ceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence 12235679999999999999999999865 33345677888888888766443 4567889999999999999999
Q ss_pred eeEEEeCCeeeeeecCc----eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 256 AIVWIKEDTQQVLTNNQ----HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 256 ~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+.|++++.. +.... ++... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 227 ~i~W~~~g~~--~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 227 TMSWTKDGEP--IENEEEDDEKHIFS-------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEEEETTEE--CCCC--CCSSEEEC-------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cEEEEECCEE--CcCCCCCCcceEEc-------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 9999999987 43332 22211 1346899999999999999999999999999999998863
No 14
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=272.13 Aligned_cols=277 Identities=21% Similarity=0.384 Sum_probs=204.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+. ..++............|.|
T Consensus 3 ~~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~---------------~~~~~~~~~~~~~~~~L~i 67 (304)
T 2yd9_A 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN---------------SQRFETIEFDESAGAVLRI 67 (304)
T ss_dssp -CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC----------------------CTTEEEEEETTTTEEEEEE
T ss_pred CccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC---------------CCceEEEEecCCCceEEEE
Confidence 3467899999999999999999999999988888999999886541 1222222112223468999
Q ss_pred cccCC-CCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 101 KDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 101 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.+++. +|+|.|+|.+.+..+. .+..+.|.|..+ |.+... +....+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus 68 ~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~-~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~ 145 (304)
T 2yd9_A 68 QPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMG-PQLKVVERTRTATMLCAASGNPDPEITWFKD 145 (304)
T ss_dssp CSCCTTTTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEEC-CCCEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred ecccccCCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecC-CccEEEeCCCeEEEEEECccCCCCeEEEEEC
Confidence 99998 9999999999876544 567778888765 333333 3456788999999999999999999999999
Q ss_pred CeeeCCCCc----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---ecceEeeCCCcccccCCCcEEE
Q psy8823 173 NNAILPTGG----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---FAPVITVPKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l 245 (386)
+..+..... .......|.|.+++.+|+|.|+|.+.|..+...+....+.|. .+|.+...+....+.+|+.+.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l 225 (304)
T 2yd9_A 146 FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225 (304)
T ss_dssp TEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEE
T ss_pred CEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEE
Confidence 988754321 122345899999999999999999999887644333455553 5677777777778899999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.+.|++++.. +....... .....|.+.++ +|+|.|+|.|.|..|..+.++.|.|...
T Consensus 226 ~C~~~g~p~p~v~W~~~~~~--l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 226 TCVAVGSPMPYVKWMQGAED--LTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp EEEEEEESCCEEEEEETTEE--CSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred EEEEeeeCCCEEEEEECCEE--CCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 99999999999999999987 43332211 13445666655 6899999999999999999999999876
Q ss_pred CC
Q psy8823 326 PV 327 (386)
Q Consensus 326 p~ 327 (386)
+.
T Consensus 293 ~~ 294 (304)
T 2yd9_A 293 PK 294 (304)
T ss_dssp --
T ss_pred cc
Confidence 65
No 15
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.1e-39 Score=297.89 Aligned_cols=310 Identities=17% Similarity=0.235 Sum_probs=228.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.+...+....+.+|+.++|.|.+.+.+.+.+.|++ ++..+. .+.++....+ ..|.|.+
T Consensus 114 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~--------------~~~~~~~~~~-----~~L~i~~ 174 (524)
T 2ec8_A 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP--------------KDLRFIPDPK-----AGIMIKS 174 (524)
T ss_dssp SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCC--------------SSCEEEEETT-----TEEEEES
T ss_pred CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcC--------------CCCceeECCC-----ccEEEec
Confidence 3444455667778999999999999877768899998 443321 1122222221 2799999
Q ss_pred cCCCCCe-EEEEEeEEcccceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeee
Q psy8823 103 IQETDAG-YYRCQVIIGINNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~ 176 (386)
++.+|+| .|+|.+.+..+...+..+.|.|. .+|.+... +....+.+|+.++|.|.+.+.|.+. ++|++++..+
T Consensus 175 ~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~ 253 (524)
T 2ec8_A 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS-KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT 253 (524)
T ss_dssp CCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECS-CSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSC
T ss_pred cchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEec-CCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCC
Confidence 9999999 99999987655444557778876 56666544 3455789999999999999988876 9999999873
Q ss_pred --CCCCc-------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC---CcccccCCCcEE
Q psy8823 177 --LPTGG-------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK---PRLGQALQYDMD 244 (386)
Q Consensus 177 --~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~ 244 (386)
..... .......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+ ....+.+|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~ 332 (524)
T 2ec8_A 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332 (524)
T ss_dssp CCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE-EEEEEEEEEESSCEEEEEESSCSEEEECTTCCEE
T ss_pred ccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCc-eEEEEEEEEeccCceEeecCCCceEEEcCCCcEE
Confidence 21111 2234678999999999999999999998887 4558899999988876543 356788999999
Q ss_pred EEEEEEecCCCe-eEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 245 LECHVEAYPPPA-IVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 245 l~C~~~g~p~~~-~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|.+.|+|.|. +.|++++.. +.... ++.. ............|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 333 l~C~~~g~P~p~~v~W~k~g~~--~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V 409 (524)
T 2ec8_A 333 LIVEYEAFPKPEHQQWIYMNRT--FTDKWEDYPK-SENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409 (524)
T ss_dssp EEEEEEEESCCCEEEEESSSCB--CSSSBCCEES-CCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEeecCCCcEEEEEECCee--ccCCccceeE-EccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEE
Confidence 999999999998 999999987 44333 2211 111111224678999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCceeecCcceeeeEEecCCC---CCccccccee
Q psy8823 323 SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQL 363 (386)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l 363 (386)
..+|....... ...| +|.|.+.|.| ++|++++..+
T Consensus 410 ~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~ 447 (524)
T 2ec8_A 410 NTKPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE 447 (524)
T ss_dssp CEEEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred ecCCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence 87765332221 2233 9999998888 7999998766
No 16
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=294.37 Aligned_cols=349 Identities=13% Similarity=0.175 Sum_probs=235.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
..|....+.+|++++|.|.+.+.+.+.+.|+|++.......+...........+.|+.. ......++|.|.+++.+|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSG--SKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEE--ecCCCEEEEEECCCChhhC
Confidence 34667779999999999999888888999999763221111111000000011234442 2334567899999999999
Q ss_pred eEEEEEeEEcccc--eeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC
Q psy8823 109 GYYRCQVIIGINN--KISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTG 180 (386)
Q Consensus 109 G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~ 180 (386)
|.|+|.+.+..+. .....+.|.|. .+|.+.... ....+.+|+.++|.|.+.|.+++ .++|+++|..+....
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 161 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFP-PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV 161 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecC-CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCce
Confidence 9999999876432 22345667773 455444332 23345679999999999887654 899999998765332
Q ss_pred ce----------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE----EEecceEeeCCCcccccCCCcEEEE
Q psy8823 181 GS----------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE----VEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 181 ~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
.. ......|.|.++..+|+|.|+|.+.|..+. ....+.+. +..+|.+....+...+.+|+.+.|.
T Consensus 162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~ 240 (523)
T 2rcj_C 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALG 240 (523)
T ss_pred EeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc-cccceeeeecCCCCcCCEEEecCCCcccccCCceEEE
Confidence 11 112347999999999999999999998765 22333322 2345655544444556789999999
Q ss_pred EEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 247 CHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 247 C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.+.|. |.| .+.|++++........... ..........+.|.|.++..+| |.|+|.|.|..|.......|.+..
T Consensus 241 C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~ 316 (523)
T 2rcj_C 241 CLVKDYFPQPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS 316 (523)
T ss_pred EEEeceeCCCeEEEEecCCcccceEeCCcE---ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc
Confidence 999886 877 8999999976221111111 0111112235689999999999 999999999999987777776654
Q ss_pred cCCCCCC-CCCce-eecCcceeeeEEecCCC-------CCcccccceeeecccc-------------eeeeeeeeecccc
Q psy8823 325 IPVCPPQ-TQPSE-LLPLRNVNMAVIFAEQP-------TSWEPQRKQLNCSSLL-------------YQCVLPLVDRQDR 382 (386)
Q Consensus 325 ~p~~~~~-~~~~~-~~~~~~~~~~c~~~~~p-------~~W~~~~~~l~~~~~~-------------~~~~i~~v~~~d~ 382 (386)
.|..... +.... +..|+.+.|.|.+.|.| ++|++||+.+..+... ..|.|..+..+|+
T Consensus 317 ~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 396 (523)
T 2rcj_C 317 LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 396 (523)
T ss_pred CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCC
Confidence 4432111 11222 67899999999997632 6899999998655321 1488999999998
Q ss_pred cCC
Q psy8823 383 LMH 385 (386)
Q Consensus 383 ~~~ 385 (386)
..|
T Consensus 397 G~Y 399 (523)
T 2rcj_C 397 KEY 399 (523)
T ss_pred CeE
Confidence 765
No 17
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=270.35 Aligned_cols=279 Identities=22% Similarity=0.384 Sum_probs=212.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.+.+..+.+|++++|.|.+.+.+. .+.|+++ +..+. .+.++....+ ....+|.|
T Consensus 2 ~~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~--------------~~~~~~~~~~--~~~~~L~i 64 (291)
T 2wim_A 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKII--------------STQRVVVQKE--GVRSRLTI 64 (291)
T ss_dssp -CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCC--------------CBTTEEEEEE--TTEEEEEE
T ss_pred CCCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCcc--------------CCCcEEEecC--CCEEEEEE
Confidence 35788999999999999999999999997664 8999994 43321 1222222221 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 65 ~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~ 143 (291)
T 2wim_A 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143 (291)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSC-CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCC
T ss_pred ccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeC-CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccC
Confidence 9999999999999999876666567788888887766543 345678899999999999999999999999988765422
Q ss_pred c---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCC
Q psy8823 181 G---SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 181 ~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~ 254 (386)
. ....+..|.|.+++.+|+|.|+|.+.+..+. .....+.+.+..+|.+..... ...+.+|+.+.|.|.+.|+|.
T Consensus 144 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 223 (291)
T 2wim_A 144 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223 (291)
T ss_dssp CSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSC
T ss_pred CceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCC
Confidence 1 1123567999999999999999999987643 345667888888887765544 456778999999999999999
Q ss_pred CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 255 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.+.|++++.. +....++... .....|.|.++..+|+|.|+|.|.|..|..++++.|.|..++.
T Consensus 224 p~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 287 (291)
T 2wim_A 224 PAISWFRNGKL--IEENEKYILK-------GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287 (291)
T ss_dssp CEEEEEETTEE--CCCTTTEEEC-------STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred CeEEEEECCEE--CcCCccEEEc-------CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence 99999999987 5544444322 1356899999999999999999999999999999999987653
No 18
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=3.9e-38 Score=305.55 Aligned_cols=341 Identities=18% Similarity=0.290 Sum_probs=264.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceee---ecCCCcceEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAI---RYDTASSTYTL 98 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L 98 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.. ..........|
T Consensus 427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~--------------~~~~~~~~~~~~~~~~~~L 492 (816)
T 3dmk_A 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN--------------DRYQVGQYVTVNGDVVSYL 492 (816)
T ss_dssp SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC--------------TTEEEEEEECTTSCEEEEE
T ss_pred cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC--------------CCcccccEEecCCCcEEEE
Confidence 45677877777788999999999999999999999999988654211 11111 11122234579
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.|.+++.+|+|.|+|.+.|..+ .....+.|.|..+|.+... ....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 493 ~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~ 569 (816)
T 3dmk_A 493 NITSVHANDGGLYKCIAKSKVG-VAEHSAKLNVYGLPYIRQM--EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI 569 (816)
T ss_dssp EESSCCTTTCEEEEEEEEETTE-EEEEEEEEEECSSCEECCC--CCEEEETTCCEEEECCEECSSEEEEEEEETTEESCC
T ss_pred EEeeccccCCEEEEEEEEECCC-eEEEEEEEEEecCCeeEcc--CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEccc
Confidence 9999999999999999998754 3467788999888866433 345688999999999999999889999999988765
Q ss_pred CCceE-EeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCcccccCCCcEEEEEEEEecCCC
Q psy8823 179 TGGSI-YRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 179 ~~~~~-~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
..... ..++.|.|.++. .+|+|.|+|.+.|..+...+..+.+.|..+|.+.. ......+..|+.++|.|.+.+.+++
T Consensus 570 ~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~ 649 (816)
T 3dmk_A 570 NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649 (816)
T ss_dssp STTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSC
T ss_pred CCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCC
Confidence 54433 246689999998 58999999999999887666778888888776543 3345567889999999999877665
Q ss_pred -eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCC
Q psy8823 256 -AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334 (386)
Q Consensus 256 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 334 (386)
.+.|++++.. +........... ....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.....+..
T Consensus 650 ~~i~W~~~g~~--l~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~ 723 (816)
T 3dmk_A 650 LNIDWTLDGQA--ISEDLGITTSRV----GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTD 723 (816)
T ss_dssp CEEEEEETTBC--CCGGGTCEEEEE----TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCC
T ss_pred CEEEEEECCeE--cCCCCCeeEEEc----CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeeccc
Confidence 9999999987 443333322211 123578999999999999999999999999999999999888875555556
Q ss_pred ceeecCcceeeeEEecCCC---CCcccccceee-------ecccce----eeeeeeeecccccCC
Q psy8823 335 SELLPLRNVNMAVIFAEQP---TSWEPQRKQLN-------CSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~-------~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
..+..|+.++|.|.+.|.| ++|++++..+. .+.+.. .|.|..|+.+|++.|
T Consensus 724 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 788 (816)
T 3dmk_A 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788 (816)
T ss_dssp EEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEE
T ss_pred ceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEE
Confidence 7788899999999998877 79999875432 222221 699999999999865
No 19
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-38 Score=309.32 Aligned_cols=327 Identities=22% Similarity=0.354 Sum_probs=253.2
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|+.++|.|.+.+.|.+.+.|+|++........ ...+.+... .+.+|.|.+++.+|+|.|+
T Consensus 257 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~--------~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~ 322 (816)
T 3dmk_A 257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA--------VVLNDRVKQ------VSGTLIIKDAVVEDSGKYL 322 (816)
T ss_dssp EEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEE--------CCCSSSEEE------ETTEEEECSCCGGGCEEEE
T ss_pred ceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcc--------eecCCceEe------ccceEEECCCCHhHCEEEE
Confidence 35578999999999999989999999996544311100 001111111 1238999999999999999
Q ss_pred EEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEEC
Q psy8823 113 CQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~ 192 (386)
|.+.|..+. .+..+.|.|..++..... +....+.+|+.++|.|.+.+.|.+.++|++++..+... ...|.|.
T Consensus 323 C~a~n~~g~-~~~~~~l~V~~~~~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~------~~~L~i~ 394 (816)
T 3dmk_A 323 CVVNNSVGG-ESVETVLTVTAPLSAKID-PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIE 394 (816)
T ss_dssp EEEECSSCE-EEEEEEEEECEEEEEEEE-SSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC------SSEEEES
T ss_pred EEEEcCCCc-eEEEEEEEEcCCCceeeC-CCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC------CCEEEEc
Confidence 999976544 366677888766654433 34567889999999999999999999999999887543 3469999
Q ss_pred CCCCCCCeEEEEEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee
Q psy8823 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269 (386)
Q Consensus 193 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 269 (386)
+++.+|+|.|+|.+.|..+. ......+.| ..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|++++.. +.
T Consensus 395 ~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~--l~ 471 (816)
T 3dmk_A 395 SVKKEDKGMYQCFVRNDRES-AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKK--IA 471 (816)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEE--CC
T ss_pred CCCHHHCEEEEEEEECCCCc-EEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEE--CC
Confidence 99999999999999998775 444555655 3466676666667788999999999999999999999999988 55
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
...++...............|.|.++..+|+|.|+|.|.|..|....++.|.|...|.. .......+..|+.++|.|.+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~-~~~~~~~v~~G~~v~l~C~~ 550 (816)
T 3dmk_A 472 NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGETLIVTCPV 550 (816)
T ss_dssp SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEE-CCCCCEEEETTCCEEEECCE
T ss_pred CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCee-EccCCeEEecCCeEEEEEEe
Confidence 55555544333333334567999999999999999999999999999999999876643 23445677889999999999
Q ss_pred cCCC---CCcccccceeeecccce-----eeeeeeeec-ccccCC
Q psy8823 350 AEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDR-QDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~-~d~~~~ 385 (386)
.+.| ++|++++..+..+.+.. .|.|..+.+ +|+..|
T Consensus 551 ~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y 595 (816)
T 3dmk_A 551 AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595 (816)
T ss_dssp ECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEE
T ss_pred cCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEE
Confidence 9888 79999999987766543 689999984 787654
No 20
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1e-37 Score=294.73 Aligned_cols=312 Identities=19% Similarity=0.279 Sum_probs=240.9
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+..|+.+.|.|.+.+.+ +.+.|++++..+.. +.++.... .+..|.|.+++.+|+|.|+|
T Consensus 299 ~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~--------------~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C 359 (642)
T 1e07_A 299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPV--------------SPRLQLSN----DNRTLTLLSVTRNDVGPYEC 359 (642)
T ss_pred eeEecCCcEEEEEECCCCC-ccEEEEECCccCCC--------------cCCEEEeC----CCCEEEEeccCcccCeeEEE
Confidence 4456688899999998765 68999998865421 12222221 12389999999999999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECC
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~ 193 (386)
.+.|..+...+..+.|.|..+|......+....+.+|+.++|.|.+.|.|.+.++|+++|..+.. +..|.|.+
T Consensus 360 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-------~~~L~i~~ 432 (642)
T 1e07_A 360 GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-------TQELFISN 432 (642)
T ss_pred EEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC-------CceEEEcc
Confidence 99987766566778888887765443344556788999999999999999999999999987643 34699999
Q ss_pred CCCCCCeEEEEEEecCCCCce-eeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee
Q psy8823 194 ITKEDRGTYYCVAENGVGKGT-RRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 269 (386)
+..+|+|.|+|.+.|..+... +..+.+.|.. +|.+.. .....+.+|+.+.|.|.+. .|.+.+.|++++.. +.
T Consensus 433 ~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~--l~ 508 (642)
T 1e07_A 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQS--LP 508 (642)
T ss_pred CChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEEECC-CCCcEEEEEECCEe--CC
Confidence 999999999999999876532 2345566654 344432 3445677899999999998 47889999999988 55
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCCCCC-CCCCceeecCcceeeeE
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPVCPP-QTQPSELLPLRNVNMAV 347 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c 347 (386)
...++.+.. .+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|...|..+. .+....+..|+.++|.|
T Consensus 509 ~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C 581 (642)
T 1e07_A 509 VSPRLQLSN-------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSC 581 (642)
T ss_pred CCCcEEEcC-------CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEE
Confidence 544443321 2468999999999999999999999997654 68888887765333 23456778899999999
Q ss_pred EecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 348 IFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 348 ~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
.+.|.| ++|++||..+..+ ..|.|..+..+|++.|
T Consensus 582 ~~~g~p~p~v~W~~~g~~i~~~---~~L~i~~~~~~d~G~Y 619 (642)
T 1e07_A 582 HSASNPSPQYSWRINGIPQQHT---QVLFIAKITPNNNGTY 619 (642)
T ss_pred EeccCCCCeEEEEECCEECccC---ceEEECcccccCCeEE
Confidence 998887 6999999988754 3689999999999865
No 21
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=6.7e-38 Score=296.01 Aligned_cols=337 Identities=19% Similarity=0.233 Sum_probs=242.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+++.+.+..+.+|++++|.|...+.+...+.|+|+........+. +.........+..+..+... ..+++|.|.+++.
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~-~~~~sL~I~~v~~ 80 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII-YPNASLLIQNIIQ 80 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceee-ccCCcEEECCCCc
Confidence 566777888999999999999766666689999954322111111 11111000111111111111 1245899999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
+|+|.|+|.+.+.........+.|.|..+ |.+... ....+.+|+.+.|.|.+.+ |.+.+.|++++..+......
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~ 157 (642)
T 1e07_A 81 NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN--NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRL 157 (642)
T ss_pred ccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc--CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCce
Confidence 99999999998754444456677777763 333322 2345788999999999988 88899999999887655443
Q ss_pred EE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEE
Q psy8823 183 IY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVW 259 (386)
Q Consensus 183 ~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W 259 (386)
.. .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.++|. +...+....+.+|+.+.|.|.+.|+|.+.+.|
T Consensus 158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W 237 (642)
T 1e07_A 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237 (642)
T ss_pred EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEE
Confidence 32 3568999999999999999999998876556778888887664 33445556788999999999999999999999
Q ss_pred EeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEEEEEEecCCCCCC-CCC-c
Q psy8823 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVELFESIIPVCPPQ-TQP-S 335 (386)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~~-~~~-~ 335 (386)
++++.. +. ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|...|..+.. ... .
T Consensus 238 ~~~g~~--i~----------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~ 299 (642)
T 1e07_A 238 FVNGTF--QQ----------------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN 299 (642)
T ss_pred EECCeE--cc----------------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCce
Confidence 999877 31 2456999999999999999999999987654 455655554332221 122 2
Q ss_pred eeecCcceeeeEEecCCC--CCcccccceeeecccce------eeeeeeeecccccCC
Q psy8823 336 ELLPLRNVNMAVIFAEQP--TSWEPQRKQLNCSSLLY------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 336 ~~~~~~~~~~~c~~~~~p--~~W~~~~~~l~~~~~~~------~~~i~~v~~~d~~~~ 385 (386)
.+..++.+.|.|.+.+.| ++|++||+.+..+.++. .|.|..++.+|+..|
T Consensus 300 ~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 357 (642)
T 1e07_A 300 PVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY 357 (642)
T ss_pred eEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeE
Confidence 333466799999998887 68999999987766543 699999999999865
No 22
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=1.5e-39 Score=285.97 Aligned_cols=310 Identities=18% Similarity=0.195 Sum_probs=223.4
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE----eccceeeecCC-CcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII----RDSRFAIRYDT-ASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 108 (386)
..+.+|++++|.|.+.+.+.+.+.|++++....... ....... ...|+....+. ..++++|.|.+++.+|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~ 79 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGN----QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEE----ETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGC
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceecc----CccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHC
Confidence 458899999999999888888999999875421000 0000000 11232221100 12355899999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI 188 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 188 (386)
|.|+|.+.+. ...+.|.|...+ ..+. ..+.+|+.++|.|.+.+.|.+.+.|++++..+ ......
T Consensus 80 G~Y~C~~~n~-----~~~~~l~V~~~~---~~~~--~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~ 143 (363)
T 1wio_A 80 DTYICEVEDQ-----KEEVQLLVFGLT---ANSD--THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKT 143 (363)
T ss_dssp EEEEEEETTE-----EEEEEEEEEEEE---ESSC--SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSE
T ss_pred EEEEEEEEEC-----CCcEEEEEEeCC---CCCc--eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceE
Confidence 9999998654 235566665411 1111 24789999999999988899999999987654 235678
Q ss_pred EEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-----cCCCeeEEEeCC
Q psy8823 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-----YPPPAIVWIKED 263 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~ 263 (386)
|.|.+++.+|+|.|+|.+.|..+. ....+.+.|...|... ....+.+|+.+.|.|.+.+ +|.|.+.|++++
T Consensus 144 L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g 219 (363)
T 1wio_A 144 LSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219 (363)
T ss_dssp EEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESS
T ss_pred EEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCC
Confidence 999999999999999999987443 4455667676555432 3455778999999998877 778899999998
Q ss_pred eeeeeec--------CceeEEeeeeec-----CceeeeEEEEeecccCCCeEEEEEEEcC--CCceeeEEEEEEEecCCC
Q psy8823 264 TQQVLTN--------NQHYSISHFATA-----DEFTDTTIRVITIEKRQYGSYICRAANK--LGTSEKTVELFESIIPVC 328 (386)
Q Consensus 264 ~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~p~~ 328 (386)
.. +.. ...+........ .......|.|.++..+|+|.|+|.|.|. .|.....+.|.|...+
T Consensus 220 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~-- 295 (363)
T 1wio_A 220 AS--SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-- 295 (363)
T ss_dssp CC--CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC--
T ss_pred CC--ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec--
Confidence 77 332 222222211100 0112448999999999999999999999 9999999999887332
Q ss_pred CCCCCCceeecCcceeeeEEecCCC-----CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 329 PPQTQPSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|+.++|.|.+.+.| ++|+++++.+..+.+ |.|..|..+|++.|
T Consensus 296 -----------g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~---l~i~~v~~~d~G~Y 343 (363)
T 1wio_A 296 -----------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR---EKAVWVLNPEAGMW 343 (363)
T ss_dssp -----------CCSSSEEEEEESSCCTTCCEEEECSSSSCSEEES---SSEEEESSCCSEEE
T ss_pred -----------CCCeeEEEEEccccCCCccEEEEeCCCceeeeee---eeeeeeccccceeE
Confidence 77899999998875 589999999886554 58899999999865
No 23
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1.1e-36 Score=284.78 Aligned_cols=343 Identities=17% Similarity=0.252 Sum_probs=242.0
Q ss_pred ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
|....+.+|++++|.|.+.+.+. ..+.|+|++.......+....+.......+|+.+......++++|.|.+++.+|
T Consensus 7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 86 (585)
T 2ocw_A 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86 (585)
T ss_pred cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCccc
Confidence 55677899999999999987654 379999988654211111111111112344565554445667799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeC----C----
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAIL----P---- 178 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~----~---- 178 (386)
+|.|+|.+.+..+. .+..+.|.|..+|.+... +....+.+|+.++|.|.+.+. +.+.+.|++++.... .
T Consensus 87 ~G~Y~C~~~n~~~~-~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~ 164 (585)
T 2ocw_A 87 SGRYKCGLGINSRG-LSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY 164 (585)
T ss_pred CEEEEEEcccCCCC-ceEEEEEEEecCccccCC-CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence 99999999876544 467788999888876543 556778999999999999765 456799999876421 1
Q ss_pred -----CCceEE--ee-----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEE
Q psy8823 179 -----TGGSIY--RG-----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 179 -----~~~~~~--~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
..+... .+ ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+| +....+.+|+.+.|.
T Consensus 165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~ 238 (585)
T 2ocw_A 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE-----PELVYEDLRGSVTFH 238 (585)
T ss_pred cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc-ccceEEEEEccCC-----CceeEEcCCCcEEEE
Confidence 111111 11 27999999999999999999998776 5667788886543 233456789999999
Q ss_pred EEEEecCC---CeeEEE-eCCee--eeeec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 247 CHVEAYPP---PAIVWI-KEDTQ--QVLTN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 247 C~~~g~p~---~~~~W~-~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
|.+ +.+. +.+.|+ +++.. ..+.. ..++.... ........|.|.++..+|+|.|+|.|.|..+
T Consensus 239 C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~ 314 (585)
T 2ocw_A 239 CAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP---QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314 (585)
T ss_pred EEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeec---cCCCcEEEEEEccCChhhCEEEEEEEEcCCC
Confidence 997 5554 578886 77742 11111 11111110 0111223799999999999999999999644
Q ss_pred cee----eEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---C----Cccc--ccc--eeeec---------cc
Q psy8823 313 TSE----KTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---T----SWEP--QRK--QLNCS---------SL 368 (386)
Q Consensus 313 ~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~----~W~~--~~~--~l~~~---------~~ 368 (386)
... .++.|.|...|.....+....+..|+.+.|.|.+.+.| + +|++ ||. .+..+ .+
T Consensus 315 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r 394 (585)
T 2ocw_A 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394 (585)
T ss_pred ccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCC
Confidence 332 78889998888777666777788999999999998888 3 6999 887 55432 22
Q ss_pred c----------eeeeeeeeecccccCC
Q psy8823 369 L----------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ~----------~~~~i~~v~~~d~~~~ 385 (386)
. ..|.|..|+.+|++.|
T Consensus 395 ~~~~~~~~~g~~~L~I~~v~~~D~G~Y 421 (585)
T 2ocw_A 395 LSLLEEPGNGTFTVILNQLTSRDAGFY 421 (585)
T ss_pred EEEeccCCCcEEEEEECCCChhhCEEE
Confidence 1 2399999999999865
No 24
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=7.9e-37 Score=285.69 Aligned_cols=351 Identities=18% Similarity=0.173 Sum_probs=245.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeec-CCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY-DTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i 100 (386)
.+|.+...+....+.+|+.++|.|.+.+. +...+.|++++......... ..+.......+++.+.. ....+.++|.|
T Consensus 111 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 189 (585)
T 2ocw_A 111 QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID-SSGYVNPNYTGRIRLDIQGTGQLLFSVVI 189 (585)
T ss_pred cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEec-CCcccCccccCcEEEEeccCCCcEEEEEE
Confidence 34566666777789999999999999854 45679999987643111000 00000001123343332 22344568999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-C-CeEEEE-EcCe---
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-T-PRISWR-RENN--- 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~-~~v~W~-~~~~--- 174 (386)
.+++.+|+|.|+|.+.+..+. .+..+.|.|..++ +..+.+.+|+.+.|.|.+.+.+ . +.+.|+ +++.
T Consensus 190 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~ 262 (585)
T 2ocw_A 190 NQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCD 262 (585)
T ss_pred ccCChhHCeEEEEEeccCCcc-ccceEEEEEccCC------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcc
Confidence 999999999999999865443 4667788887643 3345678999999999973322 2 678997 7773
Q ss_pred eeCC---------CCceEEe----e--eEEEECCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEecceEeeCCCccc
Q psy8823 175 AILP---------TGGSIYR----G--SILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLG 236 (386)
Q Consensus 175 ~~~~---------~~~~~~~----~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~ 236 (386)
.+.. ....... . ..|.|.+++.+|+|.|+|.+.|...... ...+.|.|..+|.+...+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~ 342 (585)
T 2ocw_A 263 VVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342 (585)
T ss_pred eEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCcceE
Confidence 1111 1111111 1 2799999999999999999999533311 2678899999888877777778
Q ss_pred ccCCCcEEEEEEEEecCCCee----EEEe--CCe--eeeee-------cCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 237 QALQYDMDLECHVEAYPPPAI----VWIK--EDT--QQVLT-------NNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~~~----~W~~--~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+.+|+.+.|.|.+.+.|.+.+ .|++ ++. .+... ...++.+.. ........|.|.++..+|+|
T Consensus 343 ~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~---~~~~g~~~L~I~~v~~~D~G 419 (585)
T 2ocw_A 343 GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE---EPGNGTFTVILNQLTSRDAG 419 (585)
T ss_pred EEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec---cCCCcEEEEEECCCChhhCE
Confidence 889999999999999999976 7999 776 31111 111221110 00112345999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEec----CCC---CCcccccceeeeccc------
Q psy8823 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFA----EQP---TSWEPQRKQLNCSSL------ 368 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~----~~p---~~W~~~~~~l~~~~~------ 368 (386)
.|+|.| |..|....++.|.|...|.....+....+..|+.++|.|.+. +.| ++|++||..+..+..
T Consensus 420 ~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~ 498 (585)
T 2ocw_A 420 FYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKA 498 (585)
T ss_pred EEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcc
Confidence 999999 999999999999998765544445667788999999999996 454 589999998765421
Q ss_pred ---------ceeeeeeeeecccccCC
Q psy8823 369 ---------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ---------~~~~~i~~v~~~d~~~~ 385 (386)
...|.|..|.++|++.|
T Consensus 499 ~~~~~~~~~~~~L~i~~v~~~d~G~Y 524 (585)
T 2ocw_A 499 FVNCDENSRLVSLTLNLVTRADEGWY 524 (585)
T ss_pred eEEecCcccEEEEEECCCCcccCeEE
Confidence 13799999999999865
No 25
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=4.2e-37 Score=274.42 Aligned_cols=275 Identities=24% Similarity=0.404 Sum_probs=218.8
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ...+..... +.+|.|.++
T Consensus 121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~~~-----~~~L~i~~~ 184 (403)
T 3laf_A 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP-----------GDSRVVVLP-----SGALQISRL 184 (403)
T ss_dssp CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCT-----------TCCSEEECT-----TSCEEECSC
T ss_pred CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccC-----------CceEEEEcC-----CceEEEccc
Confidence 5566666677789999999999999988888999999887652100 011111111 127999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecCCee-----ecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI-----SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-----~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+.+|+|.|+|.+.+..+...+..+.+.|...|.. ....+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 185 ~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 264 (403)
T 3laf_A 185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL 264 (403)
T ss_dssp CGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred ccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccC
Confidence 9999999999999876555556677777765532 12234556788999999999999999999999999988765
Q ss_pred CCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 179 TGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 179 ~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
..... ..+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.
T Consensus 265 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~ 343 (403)
T 3laf_A 265 RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343 (403)
T ss_dssp SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCE
T ss_pred CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCE
Confidence 43322 23568999999999999999999998776 6778899999999988888888889999999999999999999
Q ss_pred eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 257 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
+.|++++.. +.....+... ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 344 v~W~~~g~~--~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 344 VNWMKNGDV--VIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp EEEEETTEE--CCCSSSEEEE--------TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred EEEEECCEE--CCCCCcEEEe--------cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 999999987 4444443332 3567999999999999999999999999999999988654
No 26
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=283.14 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=204.6
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
....|+.+.|.|.+.|.|.+.|+|++++...... ..... .........++..|+|.|+|.
T Consensus 150 ~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~-----------~~~~~---------~~~~~~~~~~~~~d~G~Y~C~ 209 (527)
T 3qs9_E 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESC-----------KEESP---------AVVKKEEKVLHELFGTDIRCC 209 (527)
T ss_dssp EEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------CEEECCSEECCCCSSCEEEE
T ss_pred EEecCCceEEEEEEceecCCeEEEEECCCCCccc-----------cccCC---------cEEEEeeeeccccCCEEEEEE
Confidence 4567888899999999999999999977543100 00000 011223334568999999999
Q ss_pred eEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCce----------E
Q psy8823 115 VIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGS----------I 183 (386)
Q Consensus 115 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~----------~ 183 (386)
+.|..+...+..+.|.|..+|.. .+....+.+|+.+.|.|.+. +.|.+.++|++++..+...... .
T Consensus 210 A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~ 286 (527)
T 3qs9_E 210 ARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286 (527)
T ss_dssp EECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEE
T ss_pred EEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcce
Confidence 99877666555577888776655 34567889999999999996 8999999999999876543211 2
Q ss_pred EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC--CcccccCCCcEEEEEEEEecCCCeeEEEe
Q psy8823 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK--PRLGQALQYDMDLECHVEAYPPPAIVWIK 261 (386)
Q Consensus 184 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 261 (386)
.....|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.+.|++
T Consensus 287 ~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k 362 (527)
T 3qs9_E 287 IRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362 (527)
T ss_dssp EEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred eeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE
Confidence 23456999999999999999999987 4677888888888766543 24567889999999999999999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCc
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 341 (386)
++.. +....+.. .....|.|.++..+|+|.|+|.|.|..|....++.|.|..+|..... ..
T Consensus 363 ~g~~--l~~~~~~~---------~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~--------~~ 423 (527)
T 3qs9_E 363 SRKS--FPCEQKGL---------DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE--------AS 423 (527)
T ss_dssp TTEE--EECBCCBC---------SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC--------CC
T ss_pred CCEE--CcCCcccc---------cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe--------CC
Confidence 9988 44333211 13567999999999999999999999999999999999866643221 12
Q ss_pred ceeeeEEecCCC---CCccccccee
Q psy8823 342 NVNMAVIFAEQP---TSWEPQRKQL 363 (386)
Q Consensus 342 ~~~~~c~~~~~p---~~W~~~~~~l 363 (386)
...|.|.+.|.| ++|++++...
T Consensus 424 ~~~l~C~a~g~P~p~i~W~~~~~~~ 448 (527)
T 3qs9_E 424 ASQASCFSDGYPLPSWTWKKCSDKS 448 (527)
T ss_dssp CE---EEEECSSCCEEEEECCC---
T ss_pred CCEEEEEEEEEcCCeEEEEECCCCc
Confidence 346899999998 6899876544
No 27
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=1.3e-37 Score=280.69 Aligned_cols=350 Identities=14% Similarity=0.218 Sum_probs=225.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+...|....+.+|++++|.|.+.+.+. ..+.|++++.......+.............++.... ..+.++|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence 3555677788999999999999987665 479999975322111011100000001123444332 3456789999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENNAI 176 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~ 176 (386)
+++.+|+|.|+|.+.+..+......+.|.|.. +|.+....+.. ...+|+.++|.|.+.+ .|.+ .++|+++|..+
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 159 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 159 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence 99999999999999876543334455666653 44443322211 1235789999999977 5666 89999999887
Q ss_pred CCCC-----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCcE
Q psy8823 177 LPTG-----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYDM 243 (386)
Q Consensus 177 ~~~~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~ 243 (386)
.... ........|.|.++..+|+|.|+|.+.|..+.. .+.+.+.. .+.....+....+.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v 236 (438)
T 1qgc_4 160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSL 236 (438)
T ss_dssp CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCE
T ss_pred CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcE
Confidence 6541 111224579999999999999999999987652 22333321 2222233445668899999
Q ss_pred EEEEEEEecC--CCeeEEEeC--Ceeeeee---------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 244 DLECHVEAYP--PPAIVWIKE--DTQQVLT---------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 244 ~l~C~~~g~p--~~~~~W~~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.|.+.|.| .+.+.|+++ +...... ...++..... .......|.|.+++.+|+|.|+
T Consensus 237 ~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~ 313 (438)
T 1qgc_4 237 KLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRD---NAKNTLYLQMSSLRSADTAMYY 313 (438)
T ss_dssp EEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCCEEE
T ss_pred EEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEee---cCCCeEEEEECCCChhhCEEEE
Confidence 9999999998 669999986 4331110 0122222110 1123568999999999999999
Q ss_pred EEEEcCCC-----ceeeEEEEEEEecCCCCCC----CCCceeecCcceeeeEEecCC-C----CCcccccceeeec----
Q psy8823 305 CRAANKLG-----TSEKTVELFESIIPVCPPQ----TQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS---- 366 (386)
Q Consensus 305 C~a~n~~g-----~~~~~~~l~v~~~p~~~~~----~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~---- 366 (386)
|.|.|..+ .......|.|...+..+|. .+...+..|+.++|.|.+.|. | ++|++++..+...
T Consensus 314 C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~ 393 (438)
T 1qgc_4 314 CVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA 393 (438)
T ss_dssp EEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC
T ss_pred EEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc
Confidence 99999554 2224456666643322221 223446678999999999776 5 5899999886532
Q ss_pred ----ccce---eeeeeeeecccccCC
Q psy8823 367 ----SLLY---QCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 ----~~~~---~~~i~~v~~~d~~~~ 385 (386)
+.+. .|.|+++..+| ..|
T Consensus 394 ~~~~g~~~~~s~L~i~~~~~~d-g~Y 418 (438)
T 1qgc_4 394 VLQSDLYTLSSSVTVPSSTWPS-ETV 418 (438)
T ss_dssp EEETTEEEEEEEEEEEEEHHHH-SCC
T ss_pred cccCCcEEEEEEEEEehhhcCC-ceE
Confidence 2221 58999998888 544
No 28
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=100.00 E-value=2e-36 Score=260.67 Aligned_cols=284 Identities=16% Similarity=0.254 Sum_probs=206.4
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCC-----cEEEEecCCccccccccccCCceeEEeccceeeec---CCCcceEEEEE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDY-----PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DTASSTYTLLV 100 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~-----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i 100 (386)
..|....+..|++|+|.|.+.+.+.+ .|.|+|++......... ...........++.+.. ....++++|.|
T Consensus 5 ~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I 83 (313)
T 4fqp_A 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH-QTQGPSYSESKRLEFVAARLGAELRNASLRM 83 (313)
T ss_dssp ECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEE-TTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred cCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEe-cCCCceeccCcceEEEeeccCCcccceEEEE
Confidence 34566668899999999999866543 38999988654211111 11111112223333322 22345678999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+...+..+..+.|.+..+|...... ....+..++.+.+.|.+ .+.|.+.+.|++++..+...
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~-~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~ 162 (313)
T 4fqp_A 84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV-QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162 (313)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEE-CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred CcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecc-cceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence 99999999999999876656666777888888777655432 22345678888999987 57889999999998765432
Q ss_pred C-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeC-CCcccccCCCcEEEEEEEE
Q psy8823 180 G-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVP-KPRLGQALQYDMDLECHVE 250 (386)
Q Consensus 180 ~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~ 250 (386)
. +.....+.|.|.+...+|+|.|+|.+.|..+. .....+.|.|.++|.+... .....+..|+.++|.|.+.
T Consensus 163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~ 242 (313)
T 4fqp_A 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242 (313)
T ss_dssp EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEE
T ss_pred ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEec
Confidence 1 11222456999999999999999999997654 2456678888889987654 3445566789999999999
Q ss_pred ecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 251 AYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 251 g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|+|.| .+.|++++.. +..... ..+..|.|.++..+|+|.|+|.|.|..|+.+.++.|.|.+.|+
T Consensus 243 g~P~p~~v~W~~~~~~--l~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 243 SNPEPTGYNWSTTMGP--LPPFAV-----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EESCCCEEEEEETTBS--CCTTEE-----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred CCCCCcEEEEEECCEE--CCCceE-----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 99999 6999999987 433221 1356799999999999999999999999999999999987653
No 29
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=9e-37 Score=281.37 Aligned_cols=327 Identities=15% Similarity=0.190 Sum_probs=214.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.+....+.+|+.++|.|.+.+.+++ .|+|++++..+....... ......++.+. ....|.|
T Consensus 113 ~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~-------~~s~L~i 182 (523)
T 2rcj_C 113 ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT---KPSKQSNNKYA-------ASSYLSL 182 (523)
T ss_pred cCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec---cccccCCCCEE-------EEEEEEE
Confidence 45667776666667789999999999976653 899999887653211000 00000111111 1237999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEE----EecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQ----VRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
.+++.+|+|.|+|.+.|..+.. ...+.+. +..+|.+....+ ...+.+|+.+.|.|.+.|. |.+ .++|++++.
T Consensus 183 ~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~-~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~ 260 (523)
T 2rcj_C 183 TPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPQPVTVSWNSGAL 260 (523)
T ss_pred echhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCC-CcccccCCceEEEEEEeceeCCCeEEEEecCCc
Confidence 9999999999999999865432 2233322 223444442222 2345789999999999876 767 899999987
Q ss_pred eeCCC--------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCccc-ccCCCcEE
Q psy8823 175 AILPT--------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLG-QALQYDMD 244 (386)
Q Consensus 175 ~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~-~~~g~~~~ 244 (386)
.+... .+.....+.|.|.++..+| |.|+|.|.|..+. ......+.+...|.+.. .+.... +.+|+.+.
T Consensus 261 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~ 338 (523)
T 2rcj_C 261 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPE 338 (523)
T ss_pred ccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceE
Confidence 64321 1112224589999999999 9999999998887 34455666656666543 332233 67899999
Q ss_pred EEEEEEecCC----CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 245 LECHVEAYPP----PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 245 l~C~~~g~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
|.|.+.|.|+ +.++|++++.. +...................+.|.|.++..+|+|.|+|.|.|..+.......+
T Consensus 339 l~C~~~g~~p~~~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 416 (523)
T 2rcj_C 339 VTCVVVDVSHEDPQVKFNWYVDGVQ--VHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTI 416 (523)
T ss_pred EEEEEecccCCCCceEEEEEECCeE--ccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEE
Confidence 9999998754 48999999988 43332211111111222245679999999999999999999998877655555
Q ss_pred EE----EecCCCCCCCCCceeecCcceeeeEEecCCC-----CCcccccceeee
Q psy8823 321 FE----SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNC 365 (386)
Q Consensus 321 ~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~ 365 (386)
.+ ..+|.............++.++|.|.+.|.| ++|++||+.+..
T Consensus 417 ~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~ 470 (523)
T 2rcj_C 417 SKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 470 (523)
T ss_pred EcccCCCCCCEEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCC
Confidence 43 2222211111222223455699999997743 589999998864
No 30
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=100.00 E-value=4e-36 Score=255.94 Aligned_cols=268 Identities=16% Similarity=0.222 Sum_probs=203.9
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+ .+.|++++..+. ..... ..+|.|.
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~-----------~~~~~------------~~~L~i~ 62 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE-----------MVENK------------KNEWIQE 62 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC-----------EEEEC------------SSEEEET
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee-----------eecCC------------CceEEEe
Confidence 56788888888888999999999999875 899999886540 00000 0389999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC-CeEEEE-EcCeeeCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT-PRISWR-RENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~ 179 (386)
+++.+|+|.|+|.+.+ +. +..+.|.|..+|... .......+.+|+.+.|.|.+.+ |. +.++|+ +++..+...
T Consensus 63 ~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~ 136 (290)
T 2o26_X 63 KAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD 136 (290)
T ss_dssp TCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT
T ss_pred ccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC
Confidence 9999999999999986 22 677888888877655 3455677889999999999986 77 899995 566665443
Q ss_pred CceEE-eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecC
Q psy8823 180 GGSIY-RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYP 253 (386)
Q Consensus 180 ~~~~~-~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p 253 (386)
..... ....|.|.+++.+|+| .|+|.+.|..+...+..+.+.|. .+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus 137 ~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p 216 (290)
T 2o26_X 137 LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216 (290)
T ss_dssp CEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred CceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence 33222 2458999999999999 99999999855544556788876 678887777777889999999999999999
Q ss_pred CCe-eEEEeCCeee----eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 254 PPA-IVWIKEDTQQ----VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 254 ~~~-~~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.|. +.|++++... ......... ........+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 217 TSVNSMWLKMNPQPQHIAQVKHNSWHR----GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp TTCEEEEEEESSSEEECCCEECCEEEE----ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred cceeEEEecCCCCCccceeeccccccc----CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 996 9999998772 222221111 11112246789999999999999999999999999999999887654
No 31
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=100.00 E-value=8.7e-36 Score=253.73 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=203.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+ .+.|++++.... . ........+|.|.
T Consensus 2 ~p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-------------------~--~~~~~~~~~L~i~ 56 (289)
T 3ejj_X 2 DPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW-------------------T--LDPESPGSTLTTR 56 (289)
T ss_dssp --CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS-------------------E--ECCCSSCCEEEES
T ss_pred CCCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE-------------------E--EeccCCccEEEEe
Confidence 35677877778888999999999999875 499997664320 0 0111223489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCee-eCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNA-ILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~-~~~~ 179 (386)
+++.+|+|.|+|.+.+..+. .+..+.|.|..+|......+....+.+|+.+.|.|.+.+.+.+. +.|++.+.. +...
T Consensus 57 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~ 135 (289)
T 3ejj_X 57 NATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK 135 (289)
T ss_dssp SCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT
T ss_pred eeccccCEEEEEEEeccCCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC
Confidence 99999999999998865443 47778888888776443344677899999999999998876665 999875444 4333
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cC
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YP 253 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p 253 (386)
.... .....|.|.+++.+|+|.|+|.+.+......+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.+ .|
T Consensus 136 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p 215 (289)
T 3ejj_X 136 TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV 215 (289)
T ss_dssp CCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSS
T ss_pred ccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCC
Confidence 2222 2356799999999999999999995443335677888887 6777877777777789999999999998 78
Q ss_pred CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+.+.|++++.. +........ ........+.|.|.++..+|+|.|+|.|.|..|..++++.|.+...+
T Consensus 216 ~~~i~W~~~~~~--~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 216 GFNVILKRGDTK--LEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp CCEEEEEETTEE--CCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred ceEEEEEECCEE--eeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 889999999987 433222111 12222347789999999999999999999999999999999886544
No 32
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=7.8e-37 Score=276.62 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=213.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...+.+..+.+|++++|.|.+.+.+.+ .|.|+|++..+.. ... .....+.+|.|.++
T Consensus 89 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~--------------~~~-----~~~~~~~~L~i~~~ 149 (450)
T 1z7z_I 89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR--------------EPA-----VGEPAEVTTTVLVR 149 (450)
T ss_dssp EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE--------------EEC-----CTTTEEEEEEEECC
T ss_pred ceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec--------------ccc-----cccccceEEEEEee
Confidence 3355566778999999999999987776 8999998765411 110 01233458999999
Q ss_pred CCCCCeEEEEEeEEcccce-------eeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeeee-C--CCeEEE
Q psy8823 104 QETDAGYYRCQVIIGINNK-------ISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGGH-P--TPRISW 169 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~-------~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~--~~~v~W 169 (386)
+.+|+|.|+|.+.|..+.. .+....+.|... |.... ...+.+|+.+.|.|.+.+. | .+.++|
T Consensus 150 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~----~~~v~~G~~v~l~C~~~g~~P~~~~~~~W 225 (450)
T 1z7z_I 150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS----PRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225 (450)
T ss_dssp SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC----CSEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC----ceeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence 9999999999999864421 224455666543 22211 1468899999999999988 6 689999
Q ss_pred EEcCeeeCCCCceEEeeeEEEE---CCCCCCCCe--EEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCc
Q psy8823 170 RRENNAILPTGGSIYRGSILKI---PQITKEDRG--TYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYD 242 (386)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~g--~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~ 242 (386)
++++..+... .......+.+ .+++.+|+| .|+|.+.|..+. ......|.|.. +|.+... ...+.+|+.
T Consensus 226 ~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~-~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~ 300 (450)
T 1z7z_I 226 ALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILT--KPEVSEGTE 300 (450)
T ss_dssp EETTEECCCE--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEES--CSEEETTCE
T ss_pred eCCCEeCCce--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc-EEEEEEEEEecCCCCeEecC--CeeEeCCCc
Confidence 9999887552 2222212222 277899999 999999998776 45577777776 4555433 447889999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC----ceeeEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG----TSEKTV 318 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~ 318 (386)
++|.|.+. |.|.++| +|.. +... .....|.|.++..+|+|.|+|.|.|..+ ....++
T Consensus 301 v~l~C~~~--p~p~i~W--~g~~--~~~~-------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~ 361 (450)
T 1z7z_I 301 VTVKCEAH--PRAKVTL--NGVP--AQPL-------------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361 (450)
T ss_dssp EEEEEEC-----------------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecC--CCCEeEE--CCEE--cCCC-------------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeE
Confidence 99999997 8889999 6655 2110 0234799999999999999999998765 445778
Q ss_pred EEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 319 ELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 319 ~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
.|.|..+|...... ....+..|+.++|.|.+.|.| ++|++++..+..++... .|+++|++.|
T Consensus 362 ~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~-----~v~~~d~G~Y 428 (450)
T 1z7z_I 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-----TVTRDLEGTY 428 (450)
T ss_dssp ECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCE-----ECCGGGCEEE
T ss_pred EEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeE-----eEehhhCeEE
Confidence 88888888765554 334788899999999998888 79999999766655432 6888888765
No 33
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.2e-36 Score=272.62 Aligned_cols=315 Identities=12% Similarity=0.088 Sum_probs=220.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcE-----EEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPV-----IWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.+.|....+.+|++++|.|.+.+ +.+.+ .|+|++.... + .....|.|.
T Consensus 2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~---------------~----------~~~~~l~i~ 55 (450)
T 1z7z_I 2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLP---------------G----------NNRKVYELS 55 (450)
T ss_dssp CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSS---------------T----------TTEEEEEEE
T ss_pred cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEec---------------C----------CCceEEEEE
Confidence 567788888999999999999998 77777 8988764220 1 112279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~ 178 (386)
+++. |+| |+|.+.+. +...+..+.|.|..+|......+....+.+|+.+.|.|.+.+.+++ .++|+|++..+..
T Consensus 56 ~v~~-d~g-Y~C~a~~~-~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~ 132 (450)
T 1z7z_I 56 NVQE-DSQ-PMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR 132 (450)
T ss_dssp EECS-CBC-CEEEEEET-TEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred eccc-CCe-eEEEEeCC-CCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec
Confidence 9987 999 99999643 4455777888888888666444455678899999999999998887 8999999987753
Q ss_pred CCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCce-------eeeEEEEEEec----ceEeeCCCcccccCCCcEEEE
Q psy8823 179 TGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGT-------RRNIAVEVEFA----PVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 179 ~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-------~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~ 246 (386)
.... ......|.|.++..+|+|.|+|.+.|..+... +....+.|... |.+.. ...+.+|+.+.|.
T Consensus 133 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~ 209 (450)
T 1z7z_I 133 EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVV 209 (450)
T ss_dssp EECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEE
T ss_pred ccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEE
Confidence 3211 11245899999999999999999999765321 13344444432 22221 1567889999999
Q ss_pred EEEEec-C--CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe--EEEEEEEcCCCceeeEEEEE
Q psy8823 247 CHVEAY-P--PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG--SYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 247 C~~~g~-p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~ 321 (386)
|.+.|. | .+.+.|++++.. +.. ..... .......+.+ ++..+|+| .|+|.|.|..|..+.++.|.
T Consensus 210 C~~~g~~P~~~~~~~W~~~~~~--~~~--~~~~~-----~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~ 279 (450)
T 1z7z_I 210 CSLDGLFPVSEAQVHLALGDQR--LNP--TVTYG-----NDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVT 279 (450)
T ss_dssp EEEESCTTGGGCEEEEEETTEE--CCC--EEEEE-----TTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeeCCCCCCceEEEEeCCCEe--CCc--eEEec-----CCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEE
Confidence 999998 6 679999999987 333 11111 1111112222 77899999 99999999999999999998
Q ss_pred EEecCCCCCCCCCceeecCcceeeeEEecCCC-CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 322 ESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP-TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 322 v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p-~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|...|.+.-......+..|+.++|.|.+.+.| ++| +|..+...+....|.|..+..+|+..|
T Consensus 280 V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y 342 (450)
T 1z7z_I 280 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSF 342 (450)
T ss_dssp EECCCCCEEEESCSEEETTCEEEEEEEC------------------CCCCCEEEECCGGGTTCEE
T ss_pred EecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEE--CCEEcCCCCceEEEEEecCcccCCceE
Confidence 88755422233456788999999999998555 799 888884444444899999999999765
No 34
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=2.2e-36 Score=273.01 Aligned_cols=330 Identities=17% Similarity=0.255 Sum_probs=208.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|+........+ ... .+.... ...+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 45667799999999999998654 567999997532211111 111 011000 01346665544455678999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|++++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 9999999999999875433 223445677763 34333211111 23689999999999885 665 999999887
Q ss_pred eeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE------------------EecceEe
Q psy8823 175 AILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV------------------EFAPVIT 229 (386)
Q Consensus 175 ~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~ 229 (386)
.+... .........|.|.++..+| |.|+|.+.|..+.. .....+.+ ..+|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~ 242 (444)
T 1igt_B 165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVF 242 (444)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEE
T ss_pred CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEE
Confidence 53100 0122234679999999999 99999999988762 22222221 2245543
Q ss_pred eCCCccc--ccCCCcEEEEEEEEecC---C-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 230 VPKPRLG--QALQYDMDLECHVEAYP---P-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 230 ~~~~~~~--~~~g~~~~l~C~~~g~p---~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
..++... +.+|+.++|.|.+.|.+ + +.+.|++++.. +...................+.|.|.++..+|+|.|
T Consensus 243 ~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 320 (444)
T 1igt_B 243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVE--VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320 (444)
T ss_dssp EECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEE--CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred ecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCcc--ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence 3333333 58899999999999984 3 58999999977 332221111111112223467899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE----EecCCCCCCCCCceeecCcceeeeEEecC-CC----CCcccccceee
Q psy8823 304 ICRAANKLGTSEKTVELFE----SIIPVCPPQTQPSELLPLRNVNMAVIFAE-QP----TSWEPQRKQLN 364 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~-~p----~~W~~~~~~l~ 364 (386)
+|.|.|..|.......+.+ ...|.............++.++|.|.+.| .| ++|++||..+.
T Consensus 321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~ 390 (444)
T 1igt_B 321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL 390 (444)
T ss_dssp EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence 9999999987743333321 12221111111122223445999999976 33 58999999874
No 35
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=100.00 E-value=1.3e-35 Score=257.60 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=207.8
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC----CCCcEEEEecCCccccccccccCCceeEE---eccceeeecCCCcceEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA----QDYPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRYDTASSTYT 97 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 97 (386)
+.+...+....+.+|++++|.|.+.+. +...+.|++++.................. ..+++.+. .....+++
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~ 93 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGT 93 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBCC
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCce
Confidence 334444566779999999999998865 34469999965432211111111111111 12344443 23445668
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec-CCCceEEEeCC---ccEEEEEE-eeeeCCCeEEEEEc
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD-NSTRSLVVSEG---QPVQLECF-AGGHPTPRISWRRE 172 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~g---~~v~l~C~-~~~~~~~~v~W~~~ 172 (386)
|.|.+++.+|+|.|+|.+.+...+..+..+.|.|..+|.+.. .......+.+| +.++|.|. ..+.|.+.+.|+++
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~ 173 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR 173 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence 999999999999999997655455667788899998886533 23455678888 77999998 78899999999996
Q ss_pred CeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCcccccCCCcEEE
Q psy8823 173 NNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l 245 (386)
+.... ...........|.|.++..+|+|.|+|.+.|..+. .+..+.|.|.++|.+.. ......+.+|+.+.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l 252 (331)
T 3u83_A 174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252 (331)
T ss_dssp SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCEEEEEEEEEECCCSCCBTTCCCEEE
T ss_pred CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEEecCCeEEEecCCCceEeCCCeEEE
Confidence 33221 11222333567999999999999999999998776 66788899998888764 344556788999999
Q ss_pred EEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe-ecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI-TIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 246 ~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.+.|+|.|. +.|++++.. +...... ....|.|. ++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 253 ~C~~~g~p~p~~i~W~~~~~~--~~~~~~~-----------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 253 TCKADANPPATEYHWTTLNGS--LPKGVEA-----------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp EEEEEEESCCCEEEEEETTBS--CCTTEEE-----------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred EEeCcCCCCCCEEEEEECCCc--cccccee-----------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 99999999997 999999987 4333211 35679999 899999999999999999999999999998
Q ss_pred ecCCCC
Q psy8823 324 IIPVCP 329 (386)
Q Consensus 324 ~~p~~~ 329 (386)
..+...
T Consensus 320 ~~~~~~ 325 (331)
T 3u83_A 320 EAAALE 325 (331)
T ss_dssp C-----
T ss_pred ccchhh
Confidence 776543
No 36
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.2e-35 Score=261.20 Aligned_cols=261 Identities=26% Similarity=0.426 Sum_probs=197.6
Q ss_pred ceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 33 EQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
...+.+|+.+.|.|... +.+.+.+.|++++.... .+.+..... .+.+|.|.+++.+|+|.|
T Consensus 111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~--------------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y 172 (384)
T 3kld_A 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--------------QDNRRFVSQ----ETGNLYIAKVEKSDVGNY 172 (384)
T ss_dssp CEEEEETCCEEECCCCCSEESCEEEEEEETTEECC--------------CSSSEEECT----TTCCEEESSCCGGGCEEE
T ss_pred ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE--------------eeccEEEEc----CCCcEEEeecCHHHCceE
Confidence 35688999999999754 34567899999875431 111111111 123799999999999999
Q ss_pred EEEeEEccccee--eeEEEEEEe-------cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe-eeCCCCc
Q psy8823 112 RCQVIIGINNKI--SAEVDLQVR-------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN-AILPTGG 181 (386)
Q Consensus 112 ~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~ 181 (386)
+|.+.|..+... .....+.+. ..|.+....+....+.+|+.+.|.|.+.|.|.+.+.|++++. .+.....
T Consensus 173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~ 252 (384)
T 3kld_A 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 252 (384)
T ss_dssp EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE
T ss_pred EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce
Confidence 999998654321 111222221 123333333456678899999999999999999999999654 3332222
Q ss_pred eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEe
Q psy8823 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK 261 (386)
Q Consensus 182 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 261 (386)
....+..|.|.+++.+|+|.|+|.+.|..+. ......|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++
T Consensus 253 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k 331 (384)
T 3kld_A 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331 (384)
T ss_dssp ECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred ecCCCcEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEE
Confidence 2223568999999999999999999999887 556778889999988877777888999999999999999999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
++.. +....++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 332 ~g~~--l~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 332 NGDP--LLTRDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp TTEE--CCCBTTEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEE--CCCCccEEE---------eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 9988 544444432 24589999999999999999999999999999999885
No 37
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=258.30 Aligned_cols=283 Identities=20% Similarity=0.297 Sum_probs=203.4
Q ss_pred cceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEe---ccceeeecCCCcceEEEEEcccCCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+...+.+|++++|.|.+.+. +...|+|+|++................... ..|+.. .+...++++|.|.+++.+|
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLF-KNYSLNDATITLHNIGFSD 85 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEE-SCCSSSBCCEEECSCCGGG
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEe-eccCCCceEEEEccCCHHH
Confidence 45668899999999998644 445699999776543221111111111111 112222 1223455689999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeec-CCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc----
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISD-NSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG---- 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~---- 181 (386)
+|.|+|.+.+...+..+..+.+.+...|.... ..+.......|+.+.|.|.+ .|.|.+.++|++++..+.....
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~ 165 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN 165 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence 99999999987666667777788777664432 22333345568899999986 6889999999999877643221
Q ss_pred -eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeCC-CcccccCCCcEEEEEEEEecCCC-ee
Q psy8823 182 -SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVPK-PRLGQALQYDMDLECHVEAYPPP-AI 257 (386)
Q Consensus 182 -~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~-~~ 257 (386)
.....+.|.|.++..+|+|.|+|.+.|..+.. ....+.|.|..+|.+...+ ....+..|+.++|.|.+.|+|+| .+
T Consensus 166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v 245 (308)
T 4fom_A 166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS 245 (308)
T ss_dssp SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence 22234579999999999999999999976543 4556778888888876544 34456678999999999999998 69
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.|++++.. +...... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 246 ~W~k~~~~--~~~~~~~----------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 246 VWSRLDGQ--WPDGLLA----------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp ECCBSSSC--CCSSCBC----------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEECCeE--CCCcEEE----------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 99999877 4332111 1345577889999999999999999999999999999988774
No 38
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=255.93 Aligned_cols=277 Identities=19% Similarity=0.204 Sum_probs=202.8
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
++.+|.|...+....+.+|++++|.|.+.+. +.|++++... .. ........+|.|
T Consensus 1 a~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~-------------------~~--~~~~~~~~~L~i 55 (292)
T 4dkd_C 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH-------------------WT--LYSDGSSSILST 55 (292)
T ss_dssp ---CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS-------------------CE--ECCBTTEEEEEE
T ss_pred CCCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc-------------------eE--EeccCceEEEEE
Confidence 3568899998888899999999999998753 8999754321 11 111223558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+.. +..+.|.|..+|......+....+.+|+.++|.|.+.+ +. +.+.|++++.....
T Consensus 56 ~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~ 133 (292)
T 4dkd_C 56 NNATFQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM 133 (292)
T ss_dssp SSCCGGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC
T ss_pred cccccccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc
Confidence 9999999999999998754433 77888888887764443455678899999999999987 44 68999998544333
Q ss_pred CCc-eE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 179 TGG-SI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 179 ~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
... .. .....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.
T Consensus 134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~ 213 (292)
T 4dkd_C 134 RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV 213 (292)
T ss_dssp SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEES
T ss_pred cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCC
Confidence 322 21 22445999999999999999999988776556688899987 8888877777777899999999999987
Q ss_pred CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 253 PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 253 p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|++ .+.|++++..........+. .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.......
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 214 DVNFDVFLQHNNTKLAIPQQSDFH-----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286 (292)
T ss_dssp SSCCEEECCBSSCCCCCCBEEEEE-----TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred CCceEEEEeCCCcccccCccceec-----cceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence 764 68888888763222221111 1112245789999999999999999999999999999999998766543
No 39
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=5.6e-35 Score=259.37 Aligned_cols=266 Identities=18% Similarity=0.309 Sum_probs=202.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.+...+....+.+|+.++|.|.+.+.+. +.+.|++++..+.... ...+.++....+ .+|.|.
T Consensus 104 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~---------~~~~~~~~~~~~-----~~L~i~ 169 (388)
T 2v5m_A 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG---------AEYDGKYLVLPS-----GELHIR 169 (388)
T ss_dssp CCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSS---------SCBTTTEEECTT-----SCEEES
T ss_pred cccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccc---------cCCCCcEEEccC-----CcEEEe
Confidence 34444456667899999999999986543 6799999886542110 001223333222 279999
Q ss_pred ccCCCCC-eEEEEEeEEcccceeee---EEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 102 DIQETDA-GYYRCQVIIGINNKISA---EVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 102 ~~~~~d~-G~Y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
+++.+|+ |.|+|.+.+..+..... ...|.|..+ |...........+.+|+.++|.|.+.|.|.+.+.|+++
T Consensus 170 ~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~ 249 (388)
T 2v5m_A 170 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF 249 (388)
T ss_dssp SCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEE
T ss_pred cCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEec
Confidence 9999999 99999999865433221 234566554 22222223445688999999999999999999999998
Q ss_pred CeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEE
Q psy8823 173 NNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 173 ~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
+.... ...........|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~ 328 (388)
T 2v5m_A 250 IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328 (388)
T ss_dssp CTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEEESSEEEECTTSCEEEE
T ss_pred CCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCCCccccCCCcEEecCCCCEEEE
Confidence 54321 12223344678999999999999999999999887 567888999998888777777788899999999
Q ss_pred EEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 247 C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.+.|+|.|.+.|++++.. +.. ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 329 C~~~g~p~p~i~W~~~g~~--i~~---------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 329 CQYTGNPIKTVSWMKDGKA--IGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEEEECCCEEEEEETTEE--CSC---------------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEeccccCCeEEEEECCEE--Ccc---------------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 9999999999999999987 322 2467999999999999999999999999999999876
No 40
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=7e-35 Score=258.19 Aligned_cols=262 Identities=24% Similarity=0.368 Sum_probs=203.7
Q ss_pred cceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|++++|.|.+. +.+.+.+.|++++..... . .+.+..... .+.+|.|.+++.+|+|.
T Consensus 109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~-----~-------~~~~~~~~~----~~~~L~i~~~~~~d~G~ 172 (382)
T 1cs6_A 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI-----P-------ADGRRFVSQ----TTGNLYIAKTEASDLGN 172 (382)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBC-----C-------CCSSEEECT----TTCCEEESSCCGGGCEE
T ss_pred CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCcccc-----c-------cCceEEEec----CceEEEEEeeCcccCee
Confidence 455688999999999854 557788999998765310 0 111111111 12379999999999999
Q ss_pred EEEEeEEcccce----eeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 111 YRCQVIIGINNK----ISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 111 Y~C~~~~~~~~~----~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
|+|.+.+..+.. .+..+.|.+.. +|.+....+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 173 Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-- 250 (382)
T 1cs6_A 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-- 250 (382)
T ss_dssp EEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--
T ss_pred EEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--
Confidence 999998765321 12334455432 344444445567889999999999999999999999998877543
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
........|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 251 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~ 329 (382)
T 1cs6_A 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329 (382)
T ss_dssp CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred EEecCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence 22234568999999999999999999998877 66788999999998887777788889999999999999999999999
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+++.. +....++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 330 ~~g~~--~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 330 RDGQP--LASQNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ETTEE--CCCCSSEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCEE--CCCCceEEE---------ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99988 544444433 24579999999999999999999999999999999875
No 41
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=254.19 Aligned_cols=287 Identities=14% Similarity=0.210 Sum_probs=185.4
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecC---CCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD---TASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i 100 (386)
..|...+....+.+|++++|.|.+.+. |.+.|.|++++...... +....+. ...++....+ ....+++|.|
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~-i~~~~~~----~~~r~~~~~~~~~~~~~~~~L~I 78 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAREL-IYNQKEG----HFPRVTTVSESTKRENMDFSISI 78 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEE-EEETTSS----CCTTEEECC---CTTCCBCCEEE
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceE-EEEcCCC----CcceeeeecccccccCceeEEEE
Confidence 446666778889999999999999876 77889999987543111 0000000 0113322211 1144568999
Q ss_pred cccCCCCCeEEEEEeEEcccce----eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENN 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~ 174 (386)
.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+|..+........+.+|+.+.|.|.+.+.|++ .++|++++.
T Consensus 79 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~ 158 (327)
T 2wng_A 79 SNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGN 158 (327)
T ss_dssp CSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence 9999999999999999865431 2345678887665332111122457889999999999988766 899999998
Q ss_pred eeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc--eeeeEEE--EEEecceEeeCCCcccccCCC
Q psy8823 175 AILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG--TRRNIAV--EVEFAPVITVPKPRLGQALQY 241 (386)
Q Consensus 175 ~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~ 241 (386)
.+..... .......|.|.....+|.|.|+|.+.|..+.. ......+ .+..+|.+...+.. +.+|+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~ 236 (327)
T 2wng_A 159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAEN 236 (327)
T ss_dssp ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTT
T ss_pred EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCC
Confidence 8754331 12224468888877777899999999977652 2223333 45667776654433 67899
Q ss_pred cEEEEEEEEecC-CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEE
Q psy8823 242 DMDLECHVEAYP-PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTV 318 (386)
Q Consensus 242 ~~~l~C~~~g~p-~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~ 318 (386)
.+.|.|.+.|.| ++ .+.|+++|..+... .........+........|.|.++..+|+|.|+|.|.|..|... +++
T Consensus 237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~--~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~ 314 (327)
T 2wng_A 237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTE--TASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSH 314 (327)
T ss_dssp CCEEEEEEEEEBSSCEEEEEEETTEEEEEE--ECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEE
T ss_pred cEEEEEEEccccCCCcEEEEEECCeEccCc--ccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhhe
Confidence 999999999954 44 89999999883322 11111111111122346789999999999999999999998654 344
Q ss_pred EE
Q psy8823 319 EL 320 (386)
Q Consensus 319 ~l 320 (386)
.+
T Consensus 315 ~~ 316 (327)
T 2wng_A 315 DL 316 (327)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 42
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=257.61 Aligned_cols=273 Identities=16% Similarity=0.244 Sum_probs=195.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.|.. +.+..+.+|++++|.|.+.+. +.+.+.|++++..+.. +.++... .++.+|.|.
T Consensus 6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~----~~~~~L~i~ 66 (317)
T 2y25_A 6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV--------------DEKHDFK----DGICTLLIT 66 (317)
T ss_dssp SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC--------------SCC---------CCEEEEET
T ss_pred CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCC--------------CCcEEEE----CCeEEEEEc
Confidence 4677764 456779999999999999876 6788999998765421 1122221 334699999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee----------eCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----------HPTPRISWRR 171 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~----------~~~~~v~W~~ 171 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+... .....+.+|+.+.|.|.+.+ .|.+.+.|++
T Consensus 67 ~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~ 144 (317)
T 2y25_A 67 EFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMME-VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH 144 (317)
T ss_dssp TCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHHH-HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEE
T ss_pred cCCcccCeEEEEEEECCCCc-EEEEEEEEEecCcccccc-CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEE
Confidence 99999999999999876443 344455555443322111 11122445666667776655 6888999999
Q ss_pred cCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--------------------cce
Q psy8823 172 ENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--------------------APV 227 (386)
Q Consensus 172 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~ 227 (386)
++..+......... ...|.|.+++.+|+|.|+|.+.|..+. ....+.+.+.. .|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~ 223 (317)
T 2y25_A 145 NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 223 (317)
T ss_dssp SSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred CCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCcCCCCc
Confidence 99888665443322 245999999999999999999998776 44555555431 233
Q ss_pred Eee-CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 228 ITV-PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 228 ~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
+.. .+....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++.+... ......|.|.++..+|+|.|+|.
T Consensus 224 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~ 297 (317)
T 2y25_A 224 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LASDDHCNLKFE----AGRTAYFTINGVSTADSGKYGLV 297 (317)
T ss_dssp EEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSE--ECCCSSEEECCB----TTTEEEEEEBSCCSTTCEEEEEE
T ss_pred ccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEe--CCCCCcEEEEEc----CCCEEEEEECCCCHHHCEEEEEE
Confidence 333 34456788999999999999999999999999988 555554443211 01346899999999999999999
Q ss_pred EEcCCCceeeEEEEEEE
Q psy8823 307 AANKLGTSEKTVELFES 323 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~ 323 (386)
|.|..|..+.++.|.|.
T Consensus 298 a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 298 VKNKYGSETSDFTVSVF 314 (317)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999999999999886
No 43
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=2.8e-34 Score=261.28 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=210.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCce---eEEeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSS---LIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+....+.+|++|+|.|.+.+.+ ...+.|||+........+. .. .+.. .....+|+....+...++++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 34456777899999999999998654 5679999975322111111 00 0100 0112356666555455678999
Q ss_pred EcccCCCCCeEEEEEeEEcccc-----eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-C-eE
Q psy8823 100 VKDIQETDAGYYRCQVIIGINN-----KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-P-RI 167 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~-~v 167 (386)
|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...... .+.+|+.++|.|.+.|. |. + .+
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v 161 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSV 161 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEE
Confidence 9999999999999999875431 123445677763 3433322221 23689999999999887 54 4 89
Q ss_pred EEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---------------
Q psy8823 168 SWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE--------------- 223 (386)
Q Consensus 168 ~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~--------------- 223 (386)
+|++++..... .++.......|.|.++..+|+|.|+|.+.|..+......+.+.|.
T Consensus 162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~ 241 (475)
T 1iga_A 162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241 (475)
T ss_pred EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence 99998743210 111222345689999999999999999999876433444444331
Q ss_pred ---ecceEeeCCC-cccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 224 ---FAPVITVPKP-RLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 224 ---~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+|.+...++ ...+.+|+.+.|.|.+.|.++ +.+.| ++.. +...................+.|.|.++.
T Consensus 242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~--~~~~~~~~~~~~~~g~~~~~~~L~I~~~~ 317 (475)
T 1iga_A 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSS--GKSAVQGPPERDLCGCYSVSSVLPGCAEP 317 (475)
T ss_pred CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCC--cCCccccCceECCCCCEEEEEEEEEchHH
Confidence 2344423222 233578999999999998754 58999 4433 11111111111111112246789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEE---ecCCCCCCCCC-ceeecCcceeeeEEecCC-C----CCcccccceeeec
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFES---IIPVCPPQTQP-SELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS 366 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~---~~p~~~~~~~~-~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~ 366 (386)
.+|+|.|+|.|.|..|.......|.+. ..|........ ..+..|+.++|.|.+.+. | ++|++||+.+..+
T Consensus 318 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 396 (475)
T 1iga_A 318 WNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 396 (475)
T ss_pred hccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence 999999999999999986555555331 22221111111 235567789999999774 3 6899999988654
No 44
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=2.3e-34 Score=256.87 Aligned_cols=266 Identities=23% Similarity=0.375 Sum_probs=203.7
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC-Ce
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD-AG 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G 109 (386)
.+..+.+|++++|.|.+ .+.+.+.+.|++++..... .+.++.... +++|.|.+++.+| +|
T Consensus 124 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-----~~~l~i~~v~~~d~~G 185 (404)
T 3p3y_A 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-------------QDKRVSQGH-----NGDLYFSNVMLQDMQT 185 (404)
T ss_dssp CCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCC-------------CCSSEEECT-----TSCEEESSCCSGGGSS
T ss_pred CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccC-------------CCCcEEEcC-----CCcEEEEeeeeccCCc
Confidence 44668899999999998 6778889999998643311 112222211 2269999999999 59
Q ss_pred EEEEEeEEccccee--eeEEEEEEecC-------CeeecC--CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 110 YYRCQVIIGINNKI--SAEVDLQVRRP-------PVISDN--STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~--~~~~~l~v~~~-------p~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.|+|.+.+..+... ...+.+.+... |.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 186 ~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~ 265 (404)
T 3p3y_A 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265 (404)
T ss_dssp CBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCT
T ss_pred ceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCC
Confidence 99999997655432 33355555432 222211 12345688999999999999999999999999988765
Q ss_pred CCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 179 TGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 179 ~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
...... .+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|.|.+
T Consensus 266 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v 344 (404)
T 3p3y_A 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV 344 (404)
T ss_dssp TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEE
T ss_pred CcccccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCce
Confidence 543322 3568999999999999999999999887 67789999999998888888888899999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|++++.. +........ ....+..|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 345 ~W~~~g~~--~~~~~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 345 QWMVNGEP--LQSAPPNPN------REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp EEEETTEE--GGGSCCCTT------EEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEECCEe--cCCCCCCce------EEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999987 433221000 001345899999999999999999999999999999998854
No 45
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=100.00 E-value=1.5e-34 Score=250.56 Aligned_cols=267 Identities=18% Similarity=0.252 Sum_probs=194.2
Q ss_pred ccceeeecCCcEEEEEEEeeC---------CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA---------QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.....+.+|+++.|.|.+.+. +.+.+.|+|++..... ..+. . .+.+|.|.
T Consensus 36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~--------------~~~~-~------~~~~L~i~ 94 (329)
T 3oq3_B 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP--------------LNRR-V------KNGDLWIA 94 (329)
T ss_dssp EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE--------------CSTT-E------ETTEEEES
T ss_pred cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc--------------cCce-e------ecceEEEc
Confidence 356679999999999998864 4578999998875421 1111 1 12389999
Q ss_pred ccCCCCCe-EEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCCC
Q psy8823 102 DIQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~ 179 (386)
+++.+|+| .|+|.+.+..+......+.+.+..+|..... .....+.+|+.+.|.|.+.+.| .+.+.|++++..+...
T Consensus 95 ~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~-~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~ 173 (329)
T 3oq3_B 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE-TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173 (329)
T ss_dssp SCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEE-EEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCS
T ss_pred CCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEecc-ccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCC
Confidence 99999999 9999999866543333333444445443221 1122255799999999999999 8999999999988533
Q ss_pred Cc-eEEeeeEEEECCCCCCCCeEEEEEEecC--CCC---ceeeeEEEEEEecc----eEeeCCCcccccCCCcEEEEEEE
Q psy8823 180 GG-SIYRGSILKIPQITKEDRGTYYCVAENG--VGK---GTRRNIAVEVEFAP----VITVPKPRLGQALQYDMDLECHV 249 (386)
Q Consensus 180 ~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~---~~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~ 249 (386)
.. ....+..|.|.+++.+|+|.|+|.+.|. .+. ..+..+.|.|..+| .+. .+....+.+|+.+.|.|.+
T Consensus 174 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~ 252 (329)
T 3oq3_B 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTA 252 (329)
T ss_dssp SSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEE
T ss_pred CceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEE
Confidence 32 3334678999999999999999999986 433 12344778887776 333 5566778899999999999
Q ss_pred EecC---CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe-EEEEEEEcCCCceeeEEEEEE
Q psy8823 250 EAYP---PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG-SYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 250 ~g~p---~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|.| .+ .+.|++++..+.. ............. ......|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus 253 ~g~p~~~~~i~v~W~~~g~~i~~-~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 253 VSTSLLVDDVLIDWENPSGWIIG-LDFGVYSILTSSG-GITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EETTCCTTCCEEEEECTTSCBCC-BCSSEEEEEEEET-TEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EECCCCCCCcEEEEEECCeeeec-cCCceeeeecccC-ceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 9998 77 8899999886311 1222111111111 236788999999999999 999999999999999988876
No 46
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=256.46 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=181.2
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+..|+.+.|.|.+.|.|.+.|+|++++....... .......... ...| +..|+|.|+|
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~-----------~~~~~~~~~~----~~~l-----~~~d~G~Y~C 208 (423)
T 3qs7_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-----------EESPAVVKKE----EKVL-----HELFGTDIRC 208 (423)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC------------------------CEEEC----CSEE-----CCCCSSCEEE
T ss_pred cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccc-----------cccccccccc----ceEE-----ecccCeEEEE
Confidence 345678999999999999999999999876431100 0000000000 0011 5789999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc----------e
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG----------S 182 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----------~ 182 (386)
.|.|..+......+.|.|..+|... +....+.+|+.+.|.|.+.| .|.+.++|++++..+..... .
T Consensus 209 ~A~N~~G~~~~~~~~l~V~~~p~~~---~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~ 285 (423)
T 3qs7_E 209 CARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285 (423)
T ss_dssp EEECSSCEEEEECEEEESSSCCCSS---TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE
T ss_pred EEEcCCCCcceeeEEEEEecCCccC---CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCce
Confidence 9998776655555777777666542 34667899999999999988 67789999999987644321 1
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC--CcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK--PRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
......|.|.+++.+|+|.|+|.|.|. .+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.+.|+
T Consensus 286 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~ 361 (423)
T 3qs7_E 286 MIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361 (423)
T ss_dssp EEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred eEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEE
Confidence 223457999999999999999999987 5678889999888876544 3466788999999999999999999999
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~ 331 (386)
+++.. +........ ....+.+.....+|+|.|+|.|.|..|..+.++.|.|...|..+..
T Consensus 362 k~g~~--l~~~~~~~~---------~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~ 421 (423)
T 3qs7_E 362 FSRKS--FPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421 (423)
T ss_dssp ETTEE--EECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred ECCEE--CCCcccccc---------CCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence 99988 433321000 0111222456678999999999999999999999999988876543
No 47
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=244.79 Aligned_cols=276 Identities=12% Similarity=0.142 Sum_probs=185.7
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|........+.+|++++|.|.+.+. +.|++++..+.. +... ........+|.|.+++
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~----------------~~~~-~~~~~~~~~L~i~~~~ 59 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ----------------EMAK-AQDGTFSSVLTLTNLT 59 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE----------------EEEE-CTTSCEEEEEEECSCC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc----------------ceec-cCCCceeEEEEEccCC
Confidence 345555566778999999999998754 999998865411 1111 1111224589999999
Q ss_pred CCCCeEEEEEeEEcccce--eeeEEEEEEecCCeeecCCCce---EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 105 ETDAGYYRCQVIIGINNK--ISAEVDLQVRRPPVISDNSTRS---LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
.+|+|.|+|.+.|..+.. .+..+.|.|..+.......... ..+.+|+.+.|.|.+. .|.+.++|++++......
T Consensus 60 ~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~ 138 (289)
T 3mjg_X 60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP 138 (289)
T ss_dssp GGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC
T ss_pred hhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc
Confidence 999999999998765432 2344455554333222221222 6788999999999998 677889999875322211
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
........ +. ...|+|.|+|.+.|..+...+..+.+.|.. +|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 139 ~~~~~~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v 213 (289)
T 3mjg_X 139 VPYDHQRG-FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF 213 (289)
T ss_dssp CCEETTTE-EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEE
T ss_pred eeecCCcC-ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcce
Confidence 11111111 11 357999999999987665555566777765 566665555567889999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|++++.. ......................|.|.++..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus 214 ~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 214 EWTYPRKE--SGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp EEECTTSS--SSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred EEEcCCcc--CCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 99987764 21111111111111123357899999999999999999999999999999999999887643
No 48
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=3.6e-35 Score=283.32 Aligned_cols=339 Identities=14% Similarity=0.171 Sum_probs=127.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecC-CCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~ 101 (386)
.+|.+...+....+.+|++|+|.|...+ .+.|++.+.... ...++..... ......+|.|.
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~----~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~I~ 91 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSG--------------SEQRVEVTECSDGLFCKTLTIP 91 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEeccC----CeeeeCCCCCCc--------------cCCceeEEEcCCCcEEEEEEEC
Confidence 5666666666778999999999998652 578988664321 0111111111 11124489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC--Ceeec--CCCceEEEeCC--ccEEEEEEeeeeCCCeEEEEEc--C
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP--PVISD--NSTRSLVVSEG--QPVQLECFAGGHPTPRISWRRE--N 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~--~~~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~--~ 173 (386)
+++.+|+|.|+|.+. ....+..+.|.|..+ |.+.. ..+..+.+.+| +.++|.|.+.+ |.+.+.|+++ +
T Consensus 92 ~~~~~d~G~Y~C~~~---~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~ 167 (772)
T 3v2a_R 92 KVIGNDTGAYKCFYR---ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPE 167 (772)
T ss_dssp -------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTT
T ss_pred CCcHhhCEeEEEEEc---CCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCC
Confidence 999999999999986 222344455555433 22221 22345678889 88999999976 7789999998 6
Q ss_pred eeeCCCCce--EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec--ceEeeCC-CcccccCCCcEEEEEE
Q psy8823 174 NAILPTGGS--IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA--PVITVPK-PRLGQALQYDMDLECH 248 (386)
Q Consensus 174 ~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~-~~~~~~~g~~~~l~C~ 248 (386)
..+...... ......|.|.+++.+|.|.|+|.+.+......+..+.+.+... +.+...+ ....+.+|+.++|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 247 (772)
T 3v2a_R 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247 (772)
T ss_dssp EEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEE
T ss_pred ccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEE
Confidence 665443322 2335679999999999999999999765443333345555432 2333333 3357889999999999
Q ss_pred EEec--CCCeeEEEeCCeeeeeecCceeEEeeeee---cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 249 VEAY--PPPAIVWIKEDTQQVLTNNQHYSISHFAT---ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 249 ~~g~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+.+. +.+.+.|++++.. +............. ........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 248 ~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 325 (772)
T 3v2a_R 248 ARTELNVGIDFNWEYPSSK--HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325 (772)
T ss_dssp EEECTTCCCEEEEECC----------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE
T ss_pred EecCCCCceeEEEecCCcc--CCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe
Confidence 9884 4568999999876 32222211110000 222356789999999999999999999999998999999998
Q ss_pred ecCCCCCCC---CCceeecCcceeeeEEecCCC---CCcccccceeeecccc---eeeeeeeeecccccCC
Q psy8823 324 IIPVCPPQT---QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 324 ~~p~~~~~~---~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~---~~~~i~~v~~~d~~~~ 385 (386)
..|...... ....+..|+.++|.|.+.+.| ++|+++|..+....+. ..|.|..|+.+|+..|
T Consensus 326 ~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y 396 (772)
T 3v2a_R 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY 396 (772)
T ss_dssp CCCC-------------------------------------------------------------------
T ss_pred CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceE
Confidence 877543322 345678899999999998876 7999999998876543 4799999999999865
No 49
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=100.00 E-value=1.1e-34 Score=253.79 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=172.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC-----------CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-----------DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.....+.+|+++.|.|.+.+.| .+.+.|++++...... ..... ...+.++... +.+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~-~~~~~----~~~~~~~~~~------~~~L~ 82 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE-EPINF----RLPENRISKE------KDVLW 82 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCE-EECCC----CCGGGCEEEE------TTEEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccc-ccccc----cccCceEeec------CCEEE
Confidence 3455689999999999998654 3789999988432100 00000 0011122211 22799
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec---CCCceEEEeCCccEEEEEEe-----eeeCCCeEEEEE
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD---NSTRSLVVSEGQPVQLECFA-----GGHPTPRISWRR 171 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~---~~~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~ 171 (386)
|.+++.+|+|.|+|.+.+.. ......+.|.|..++.... ..+....+.+|+.+.|.|.+ .+.|.+.+.|++
T Consensus 83 i~~~~~~D~G~Y~C~a~n~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k 161 (349)
T 4dep_C 83 FRPTLLNDTGNYTCMLRNTT-YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161 (349)
T ss_dssp ESSCCGGGCEEEEEEEECSS-CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred EccCChhhCEEEEEEEecCC-ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence 99999999999999998754 3345567788877553322 11335567899999999975 678899999999
Q ss_pred cCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC-CCc--eeeeEEEEEEe------cceEeeCCCcc--cccCC
Q psy8823 172 ENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV-GKG--TRRNIAVEVEF------APVITVPKPRL--GQALQ 240 (386)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g 240 (386)
++..+.........+..|.|.+++.+|+|.|+|.+.|.. +.. .+..+.|.|.. +|.+..+.... .+..|
T Consensus 162 ~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G 241 (349)
T 4dep_C 162 GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG 241 (349)
T ss_dssp TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence 999886554445556789999999999999999999976 432 35667777766 46555444332 67889
Q ss_pred CcEEEEEEEE----ecCCCeeEEEeCCeeeeeec-CceeEEeeee----ecCceeeeEEEEeecccCCC-eEEEEEEEcC
Q psy8823 241 YDMDLECHVE----AYPPPAIVWIKEDTQQVLTN-NQHYSISHFA----TADEFTDTTIRVITIEKRQY-GSYICRAANK 310 (386)
Q Consensus 241 ~~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~ 310 (386)
+.+.|.|.+. |.|.|.+.|++++.. +.. ..++...... .........|.|.++..+|+ |.|+|.|.|.
T Consensus 242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 319 (349)
T 4dep_C 242 EELLIPCTVYFSFLMDSRNEVWWTIDGKK--PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSA 319 (349)
T ss_dssp ---CCCEEEEECCCTTCCCEEEEESSCC----------CCCCEEEECCTTCCEEEEECC-------------CEEEEECS
T ss_pred CcEEEEEEEEEccCCCCCCEEEEEECCEE--ccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcC
Confidence 9999999998 568889999999987 332 1111111100 01122356799999999999 9999999999
Q ss_pred CCceeeEEEEEEEe
Q psy8823 311 LGTSEKTVELFESI 324 (386)
Q Consensus 311 ~g~~~~~~~l~v~~ 324 (386)
.|....++.|.|..
T Consensus 320 ~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 320 KGEVAKAAKVKQKV 333 (349)
T ss_dssp SCEEEEECC-----
T ss_pred CCcEEEEEEEeeec
Confidence 99999999988854
No 50
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=5.7e-35 Score=264.69 Aligned_cols=331 Identities=15% Similarity=0.234 Sum_probs=200.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cc-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PI-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ ...+.|+|+........+ .. ..+..... ..+|+.+..+...+.++|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 45567799999999999998765 567999996433211111 11 11111111 1346665554445678999999
Q ss_pred cCCCCCeEEEEEeEEccc---------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-C
Q psy8823 103 IQETDAGYYRCQVIIGIN---------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-P 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~ 165 (386)
++.+|+|.|+|.+.+..+ . .......|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |. +
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCe
Confidence 999999999999987543 0 123445677764 3443322211 135689999999999876 54 7
Q ss_pred eEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE--------------
Q psy8823 166 RISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-------------- 223 (386)
Q Consensus 166 ~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~-------------- 223 (386)
.++|++++..+. ..++.......|.|.++..+| |.|+|.+.|..+. ......+.+.
T Consensus 165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCC
T ss_pred EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCCCCCc
Confidence 899999885432 111222234579999999989 9999999996654 2222333221
Q ss_pred ---ecceE-eeCCCccc-ccCCCcEEEEEEEEecCCC----eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEee
Q psy8823 224 ---FAPVI-TVPKPRLG-QALQYDMDLECHVEAYPPP----AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294 (386)
Q Consensus 224 ---~~p~~-~~~~~~~~-~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 294 (386)
.+|.+ ..++.... +.+|+.+.|.|.+.|.|++ .+.|++++.. +...................+.|.|..
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~--~~~~~~~~~~~~~~g~~~~~~~l~i~~ 320 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE--VHNAKTKPREEQYNSTYRVVSVLTVLH 320 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEE--ECCCEEEEEEECTTSCEEEEEEECCCH
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcc--ccccccccceecCCCcEEEEEEEEECH
Confidence 14444 22322222 5679999999999998653 8999999987 332221111111111111123333434
Q ss_pred cccCCCeEEEEEEEcCCCceeeEEEEEE----EecCCCCCCCCCceeecCcceeeeEEecCC-C----CCcccccceeee
Q psy8823 295 IEKRQYGSYICRAANKLGTSEKTVELFE----SIIPVCPPQTQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNC 365 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~ 365 (386)
...+|+|.|+|.|.|..+....+..+.+ ...|.............++.++|.|.+.|. | ++|++||..+..
T Consensus 321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~ 400 (457)
T 1hzh_H 321 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 400 (457)
T ss_dssp HHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred HHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 4445599999999998766544433322 112211111112222334459999999764 2 689999998854
No 51
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=100.00 E-value=5.1e-36 Score=260.58 Aligned_cols=272 Identities=22% Similarity=0.398 Sum_probs=137.7
Q ss_pred ccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
+....+.+|++++|.|.+.+. |.+.+.|++++..+. .+.++.. .+.+|.|.+++.+|+|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~--------------~~~~~~~------~~~~L~i~~v~~~D~G 74 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV--------------PSERVLV------GPQRLQVLNASHEDSG 74 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCC--------------CcccEEe------ccceEEEeecccccCE
Confidence 677779999999999999876 567899999886542 1122222 2348999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEEecCC----------------------eeec---CCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 110 YYRCQVIIGINNKISAEVDLQVRRPP----------------------VISD---NSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v~~~p----------------------~~~~---~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
.|+|.+.+. +..+..+.|.|...+ .+.. .......+.+|+.+.|.|.+.|.|.
T Consensus 75 ~Y~C~a~n~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~ 152 (334)
T 1ry7_B 75 AYSCRQRLT--QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT 152 (334)
T ss_dssp ----------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC
T ss_pred EEEEEEEeC--CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC
Confidence 999999876 344556666665433 2211 1123467889999999999999999
Q ss_pred CeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec----ceEee-CCCc
Q psy8823 165 PRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA----PVITV-PKPR 234 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~ 234 (386)
+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|... |.+.. .+..
T Consensus 153 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~ 231 (334)
T 1ry7_B 153 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPAN 231 (334)
T ss_dssp CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTCSCC
T ss_pred CeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecCCCc
Confidence 999999999877544321 113457999999999999999999998876 566778888763 22322 2345
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCce--eEEeeee--ecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQH--YSISHFA--TADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
..+.+|+.+.|.|.+.|.|.|.+.|++ ++.. +..... ....... .........|.|.++..+|+|.|+|.
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 309 (334)
T 1ry7_B 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK--VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL 309 (334)
T ss_dssp EEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCS--BCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred eEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcc--ccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence 667889999999999999999999999 5554 222211 1111000 00011234799999999999999999
Q ss_pred EEcCCCceeeEEEEEEEecCC
Q psy8823 307 AANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|..|....++.|.|...|.
T Consensus 310 a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 310 AGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp EEESSCCEEEEEEEEEECSCC
T ss_pred EeCCCCeEEEEEEEEEEECCC
Confidence 999999999999999987664
No 52
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=234.79 Aligned_cols=239 Identities=23% Similarity=0.294 Sum_probs=188.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|.+.|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+.. .+.+|.|.+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~--------------------------~~~~l~i~~ 54 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--------------------------STPSYRITS 54 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC--------------------------CSSEEEESS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec--------------------------cCCeEEEec
Confidence 4778888888889999999999999887776 8999998754311 022799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.+. ..+..+.|.|..++..... ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 55 ~~~~d~G~Y~C~~~~~---~~s~~~~l~v~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~--- 126 (262)
T 3rjd_A 55 ASVNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF--- 126 (262)
T ss_dssp CCGGGCEEEEEEESSS---CCCCCEEEEEECSSEEEEE--SCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE---
T ss_pred CCcccCeEEEEEEecC---CccccEEEEEeccceEecC--CCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc---
Confidence 9999999999998743 2345677888777654432 23457899999999999 7778889999999987632
Q ss_pred eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCC-C--
Q psy8823 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPP-P-- 255 (386)
Q Consensus 182 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~-- 255 (386)
......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|.. +|.+...+ ...+.+|+.+.|.|.+.+.|. +
T Consensus 127 -~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~ 203 (262)
T 3rjd_A 127 -FHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGL 203 (262)
T ss_dssp -EEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC----
T ss_pred -cCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCc
Confidence 223567999999999999999999998754 56777888875 44454444 566788999999999999886 4
Q ss_pred --eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 256 --AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 256 --~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.+.|++++.. +... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 204 ~~~~~w~~~~~~--~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 204 QLYFSFYMGSKT--LRGR-------------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp -EEEEEEETTEE--EEEE-------------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEEEEEEeCCcE--eccc-------------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 3788999887 3211 135679999999999999999999999975
No 53
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.6e-33 Score=249.26 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=197.8
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe-
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG- 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G- 109 (386)
....+.+|+.+.|.|.+ .+.|.+.+.|++++....... .. ...+.++.... +++|.|.+++.+|+|
T Consensus 108 ~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---~~----~~~~~~~~~~~-----~~~L~i~~v~~~d~G~ 175 (395)
T 1bih_A 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA---DV----TDFDRRITAGP-----DGNLYFTIVTKEDVSD 175 (395)
T ss_dssp EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG---CC----CCCCTTEEECT-----TSCEEEEEECGGGCCS
T ss_pred cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccc---cc----ccccccEEEcC-----CCcEEEEEEeeccCCC
Confidence 45557899999999996 677888999999863211000 00 00122222222 227999999999999
Q ss_pred --EEEEEeEEcccceeeeEE--EEEEec----------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 110 --YYRCQVIIGINNKISAEV--DLQVRR----------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 110 --~Y~C~~~~~~~~~~~~~~--~l~v~~----------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
.|+|.+.+..+....... .+.+.. +|.+ .+....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus 176 ~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~ 252 (395)
T 1bih_A 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252 (395)
T ss_dssp SEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE
T ss_pred ceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEE
Confidence 999999986554322111 111111 1111 13456788999999999999999999999999988
Q ss_pred eCCCCceEE------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCc-ccccCCCcEEEEEE
Q psy8823 176 ILPTGGSIY------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-LGQALQYDMDLECH 248 (386)
Q Consensus 176 ~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~ 248 (386)
+........ .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~ 332 (395)
T 1bih_A 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332 (395)
T ss_dssp CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECE
T ss_pred cCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEE
Confidence 754322111 12379999999999999999999998876666899999999998877666 77889999999999
Q ss_pred EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 249 ~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.|.+.|++++.. +... ++.. ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 333 ~~g~p~p~v~W~~~g~~--~~~~-~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 333 VTGLPAPNVVWSHNAKP--LSGG-RATV---------TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEESCCCCEEEETTEE--CCSS-SEEE---------ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ECcccCCeeEEEECCEE--CCCC-ceEE---------ECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 99999999999999987 4433 3322 2348999999999999999999999999999998877
No 54
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=100.00 E-value=1.4e-34 Score=249.39 Aligned_cols=273 Identities=17% Similarity=0.235 Sum_probs=195.1
Q ss_pred cceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+.+.|.|.+.+.+ .+.+.|++++..... .. ....++... +.+|.|.+++.+|+|.
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~---~~-------~~~~~~~~~------~~~L~i~~v~~~D~G~ 76 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV---ST-------EQASRIHQH------KEKLWFVPAKVEDSGH 76 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCS---CC-------CTTSSSEEC------SSBEECTTCCGGGCSC
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcc---cc-------ccCCcEecc------CCeEEECCCChhhCEE
Confidence 345689999999999998776 678999998864311 00 011222221 1279999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEe-cCCeeecC--CCceEEEeCCccEEEEEEe------eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 111 YRCQVIIGINNKISAEVDLQVR-RPPVISDN--STRSLVVSEGQPVQLECFA------GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~--~~~~~~~~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
|+|.+.+..+ .....+.+.+. .+|.+... ......+..|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 77 Y~C~a~n~~g-~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~ 155 (315)
T 1itb_B 77 YYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155 (315)
T ss_dssp CEECCCSSSC-CCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred EEEEEeCCce-EEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence 9999986543 23344444443 23332211 1123568899999999998 7889999999999998855333
Q ss_pred -eEEeeeEEEECCCCCCCCeEEEEEEe-cCCCCce--eeeEEEEEE-----ecceEeeCCCc-ccccCCCcEEEEEEEEe
Q psy8823 182 -SIYRGSILKIPQITKEDRGTYYCVAE-NGVGKGT--RRNIAVEVE-----FAPVITVPKPR-LGQALQYDMDLECHVEA 251 (386)
Q Consensus 182 -~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~g 251 (386)
....+..|.|.+++.+|+|.|+|.+. |..+... ...+.+.+. .+|.+..++.. ..+.+|+.+.|.|.+.|
T Consensus 156 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g 235 (315)
T 1itb_B 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235 (315)
T ss_dssp SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEE
T ss_pred eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEec
Confidence 33456789999999999999999999 6766643 233444343 56666555443 46889999999999999
Q ss_pred cCCCeeEEEeCCeeeeeecCceeEEeeeee-------cCceeeeEEEEeecccCC-CeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFAT-------ADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 252 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|.+.|++++.. +............. ......+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 236 ~P~p~i~W~~~g~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 236 QLSDIAYWKWNGSV--IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp CTTSEEEEEETTEE--CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCCCeeEEEECCEE--CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 99999999999987 44433211111110 011245689999999999 999999999999999999999874
No 55
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=245.54 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=188.1
Q ss_pred eeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
..+.+|+.+.|.|... +.|.+.+.|+|++..+.. +.++.... .....+|.|.+++.+|+|.|+
T Consensus 11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--------------~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 74 (312)
T 2y23_A 11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--------------SPRLEVES--KGNKTKMTFKDLGMDDLGIYS 74 (312)
T ss_dssp EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--------------CTTEEEEE--ETTEEEEEESSCCGGGCEEEE
T ss_pred EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--------------CCCEEEEE--eCCEEEEEECcCCccCCEEEE
Confidence 4478999999999886 457788999998865421 22333322 223458999999999999999
Q ss_pred EEeEEcccceeeeEEEEEEec------------CCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCC
Q psy8823 113 CQVIIGINNKISAEVDLQVRR------------PPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPT 179 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+.+..+... ...+.|.. +|.+.........+.+|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus 75 C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~ 152 (312)
T 2y23_A 75 CDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG 152 (312)
T ss_dssp EEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS
T ss_pred EEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC
Confidence 99987655332 34455432 444433323366788999999999998 8899999999999998765
Q ss_pred CceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---------------------ecceEeeCC
Q psy8823 180 GGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---------------------FAPVITVPK 232 (386)
Q Consensus 180 ~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~ 232 (386)
...... ...|.|.+++.+|+|.|+|.+.+.... ....+.+. .+|.+....
T Consensus 153 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (312)
T 2y23_A 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229 (312)
T ss_dssp SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceeecc
Confidence 543332 234999999999999999999865433 22233321 124433222
Q ss_pred CcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+.+|+.+.|.|.+.|.|+| .+.|++++.. +....++... .....|.|.++..+|+|.|+|.|.|..
T Consensus 230 -~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~N~~ 299 (312)
T 2y23_A 230 -SWEVTGECNVLLKCKVANIKKETHIVWYKDERE--ISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDR 299 (312)
T ss_dssp -EEEEETTTEEEEEEEEESCCSSCEEEEEETTEE--EEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTT
T ss_pred -eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEE--CCCCCcEEEE-------CCEEEEEECcCCHHHCEEEEEEEEcCC
Confidence 2567799999999999999998 9999999988 4433333322 135789999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.+
T Consensus 300 G~~~~~~~l~i 310 (312)
T 2y23_A 300 GKDKSRLKLVD 310 (312)
T ss_dssp CCEEEEEEECS
T ss_pred CceeeeeEEEe
Confidence 99999988865
No 56
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=1.1e-35 Score=286.97 Aligned_cols=349 Identities=18% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCeeeeeccc-eeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQE-QIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~-~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
++.+.+.+.. ..+.+|++++|.|.+.+ .+...+.|++++......... ..................|.|
T Consensus 223 ~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~L~i 294 (772)
T 3v2a_R 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV--------NRDLKTQSGSEMKKFLSTLTI 294 (772)
T ss_dssp EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CE--------EEEC-----CCCEEEEEEEEE
T ss_pred cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceee--------eccccccccccceEEEEEEEE
Confidence 3455555554 57899999999999987 445679999988654221000 000000000011224458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCC--CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS--TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|.+.... .....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 295 ~~v~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~ 373 (772)
T 3v2a_R 295 DGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES 373 (772)
T ss_dssp SSCCSTTCSEEEEEEECSSC-EEEEEEEEEEECCCC--------------------------------------------
T ss_pred CcCCcCCCeEEEEEEEcCCc-ceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC
Confidence 99999999999999986544 45777889998888654322 2345688999999999999999999999999987754
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeC---CCcccccCCCcEEEEEEEEecCC
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVP---KPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
.... .....|.|.++..+|+|.|+|.+.|..+.. .+..+.|.|.++|.+... .+...+.+|+.++|.|.+.|.|.
T Consensus 374 ~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 452 (772)
T 3v2a_R 374 NHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPP 452 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceE-ccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCC
Confidence 3222 244789999999999999999999987653 355778888888876432 12224778999999999999999
Q ss_pred Ce-eEEEeCCeeeee-e-----------------------cCceeEE----eeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 255 PA-IVWIKEDTQQVL-T-----------------------NNQHYSI----SHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 255 ~~-~~W~~~~~~~~~-~-----------------------~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|. +.|++++..... . ....... .............|.|.++ +|+|.|+|
T Consensus 453 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C 530 (772)
T 3v2a_R 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKC 530 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEE
Confidence 96 999997432000 0 0000000 0000111112356777776 78999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeeccc--------------
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSL-------------- 368 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~-------------- 368 (386)
.|.|..|..+.++.|.|...|.....+ ...+..|+.+.|.|.+.+.| ++|++++..+.....
T Consensus 531 ~a~N~~g~~~~~~~l~V~~~p~i~~~p-~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 609 (772)
T 3v2a_R 531 EAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccccccceeEEEEEECCceeeccC-CcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccce
Confidence 999999999999999888766543322 24577899999999998887 799999977643221
Q ss_pred --------------ceeeeeeeeecccccCC
Q psy8823 369 --------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 --------------~~~~~i~~v~~~d~~~~ 385 (386)
...|.|.++..+|++.|
T Consensus 610 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 640 (772)
T 3v2a_R 610 WKLNATMFSNSTNDILIMELKNASLQDQGDY 640 (772)
T ss_dssp -------------------------------
T ss_pred eeccceeeecCCCceEEEEECCCCccCCcEE
Confidence 12499999999999876
No 57
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=3.1e-32 Score=231.17 Aligned_cols=244 Identities=21% Similarity=0.381 Sum_probs=200.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~pP~~~~~-p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 4 APPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCEEEEC-CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEcc-ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 45655544 4566789999999999999999999999999998866544322 256899999999999999999999
Q ss_pred CCCCceeeeEEEEEEecceEeeCCC-cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceee
Q psy8823 209 GVGKGTRRNIAVEVEFAPVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287 (386)
Q Consensus 209 ~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (386)
..+. .+..+.|.|..+|.+..... ...+.+|+.+.|.|.+.|.|.+.+.|++++.. +.....+..... ...
T Consensus 83 ~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~ 154 (284)
T 2rik_A 83 VAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE--IQESSKFRMSFV-----ESV 154 (284)
T ss_dssp TTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEE--CCCSSSEEEEEE-----TTE
T ss_pred CCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEE--CcCCCcEEEEEc-----CCE
Confidence 8776 56788899999888665433 45578899999999999999999999999988 444443332211 135
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceee
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLN 364 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~ 364 (386)
..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....+....+..|+.++|.|.+.+.| ++|++++..+.
T Consensus 155 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 234 (284)
T 2rik_A 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR 234 (284)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc
Confidence 789999999999999999999999999999999999888766666667788999999999999888 68999999998
Q ss_pred ecccce--------eeeeeeeecccccCC
Q psy8823 365 CSSLLY--------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 365 ~~~~~~--------~~~i~~v~~~d~~~~ 385 (386)
.+.++. .|.|..|+.+|+..|
T Consensus 235 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 263 (284)
T 2rik_A 235 SGKKYKIMSENFLTSIHILNVDSADIGEY 263 (284)
T ss_dssp BTTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CCCCEEEEEcCCEEEEEEcCCCcccCEEE
Confidence 776542 689999999998765
No 58
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=3.3e-36 Score=270.96 Aligned_cols=349 Identities=12% Similarity=0.197 Sum_probs=214.9
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC-Cce---eEEeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST-GSS---LIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++++|.|.+.+.+ ...|.|+|+........+. ... +.. ....++|+.+..+...++++|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 4566789999999999998653 5679999975322111010 000 000 00113455554443345668999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAIL 177 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~ 177 (386)
+.+|+|.|+|.+.+.. ......+.|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|++++..+.
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 86 TSDDSAVYYCVREGEV-PYWGQGTTVTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp CGGGCSEECCCCSSSS-CCCCCCEECEECCSCCBCCCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred ChHHCEEEEEEEEccc-cccCCceEEEEccCCCCCCeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9999999999997632 2223445677753 34333211111 24689999999999886 665 899999886421
Q ss_pred C-------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---------c---ceEeeCCCccc--
Q psy8823 178 P-------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---------A---PVITVPKPRLG-- 236 (386)
Q Consensus 178 ~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------~---p~~~~~~~~~~-- 236 (386)
. ..........|.|.++..+| |.|+|.+.|..+.. .....+.+.. . |.+...++...
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~ 241 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT 241 (434)
T ss_dssp EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHH
T ss_pred eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHh
Confidence 0 01222234579999999888 99999999987762 2222222210 0 33333233222
Q ss_pred ccCCCcEEEEEEEEecC----CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAYP----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+.+|+.+.|.|.+.|.+ .+.+.|++++.. +...................+.|.|.++..+|+|.|+|.|.|..|
T Consensus 242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVE--VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCC--BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred cccCCCcEEEEEEeccccCCCCeEEEEEeCCcc--cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence 78899999999999884 348999999976 332211111111112222456799999999999999999999998
Q ss_pred ceeeEEEEE----EEecCCCCCCCCCceeecCcceeeeEEecCC-C----CCcccccceeeeccc----------c---e
Q psy8823 313 TSEKTVELF----ESIIPVCPPQTQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCSSL----------L---Y 370 (386)
Q Consensus 313 ~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~~~----------~---~ 370 (386)
.......+. +...|.............++.++|.|.+.|. | ++|++||+.+..... + .
T Consensus 320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 399 (434)
T 1igy_B 320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYS 399 (434)
T ss_dssp SSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEE
T ss_pred CCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEE
Confidence 653322222 2222322111222223456789999999763 3 689999998853211 0 1
Q ss_pred eeeeeeeecccccCC
Q psy8823 371 QCVLPLVDRQDRLMH 385 (386)
Q Consensus 371 ~~~i~~v~~~d~~~~ 385 (386)
.|.|.+...+|+..|
T Consensus 400 ~l~i~~~~~~~~g~Y 414 (434)
T 1igy_B 400 KLNVQKSNWEAGNTF 414 (434)
T ss_dssp EEEEEHHHHHTTCCE
T ss_pred EEEECchhccCCCEE
Confidence 366777766666543
No 59
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=251.40 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=207.0
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEe-------eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCC
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQ-------YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (386)
.+...|.+...+....+.+|+++.|.|.+. +.+.+.|.|++++....- ... ...++...
T Consensus 14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~-----~~~-----~~~~~~~~---- 79 (339)
T 3o4o_C 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTV-----PGE-----EETRMWAQ---- 79 (339)
T ss_dssp ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCC-----SCC-----SSSCEEEE----
T ss_pred cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCccc-----Ccc-----ccccEEee----
Confidence 455678899999999999999999999997 778889999998865310 000 01122211
Q ss_pred cceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeee-cCCCceEEEeCCccEEEEEE-----eeeeCCCe
Q psy8823 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQLECF-----AGGHPTPR 166 (386)
Q Consensus 93 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~v~l~C~-----~~~~~~~~ 166 (386)
+.+|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..++... ........+.+|+.+.|.|. +.+.|.+.
T Consensus 80 --~~~L~i~~v~~~D~G~Y~C~~~n~~g-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~ 156 (339)
T 3o4o_C 80 --DGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK 156 (339)
T ss_dssp --TTEEEESSBCTTCCEEEECCEEETTE-EEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCC
T ss_pred --CCeEEECCCCcccCEEEEEEEECCcc-eEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCce
Confidence 22899999999999999999997643 45677888888765432 11122346889999999999 78888999
Q ss_pred EEEEEcCeeeCCCCceEE---eeeEEEECCCCCCCCeEEEEEEecCCCC---ceeeeEEEEEEe-----cceEeeCCCcc
Q psy8823 167 ISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTYYCVAENGVGK---GTRRNIAVEVEF-----APVITVPKPRL 235 (386)
Q Consensus 167 v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~ 235 (386)
+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|.. +|.+..++...
T Consensus 157 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~ 236 (339)
T 3o4o_C 157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236 (339)
T ss_dssp BCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCC
T ss_pred EEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCcee
Confidence 999999988765533222 1247999999999999999999997764 245667777764 45666666667
Q ss_pred cccCCCcEEEEEEE---EecC-CCeeEEEeCCeeeee-------ecCceeEEeeeeecCceeeeEEEEeecccCCC-eEE
Q psy8823 236 GQALQYDMDLECHV---EAYP-PPAIVWIKEDTQQVL-------TNNQHYSISHFATADEFTDTTIRVITIEKRQY-GSY 303 (386)
Q Consensus 236 ~~~~g~~~~l~C~~---~g~p-~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y 303 (386)
.+.+|+.+.|.|.+ .|.| .+.+.|++++..+.. .....+.. ...........|.|.++..+|. |.|
T Consensus 237 ~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~L~i~~v~~~d~~G~Y 314 (339)
T 3o4o_C 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY--SENNENYIEVPLIFDPVTREDLHMDF 314 (339)
T ss_dssp CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC--CCSSSCEEEECCEECSSCCCSCCCCC
T ss_pred EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEe--cccCceEEEEEEEEEEechhhcCccE
Confidence 78899999999999 8999 779999999876211 11111111 1111112234799999999997 999
Q ss_pred EEEEEcCCCceeeEEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|.|..|+.+..+.+.+.
T Consensus 315 ~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 315 KCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp EEEEEETTEEECCBCCCCC-
T ss_pred EEEEEeccCceEEEEEhhHh
Confidence 99999999999988877553
No 60
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=100.00 E-value=3.8e-32 Score=234.14 Aligned_cols=270 Identities=15% Similarity=0.153 Sum_probs=180.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+... .. ....+..|.|.
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~----------------~~----~~~~~~~L~I~ 79 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI----------------FH----GRIFQESFNMS 79 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH----------------HH----HCCBSSCEEEC
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee----------------ec----CCcceEEEEEC
Confidence 45788888877 568899999999999866 6789999988654210 00 00112379999
Q ss_pred ccCCCCCeEEEEEeEEcc----cceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGI----NNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~----~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+.. ....+..+.|.|... |.+...+ .. .+.+|+.++|.|.+. .+++.+.|++++.
T Consensus 80 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~-~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~ 156 (316)
T 3vh8_G 80 PVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GP-LVKSGERVILQCWSD-IMFEHFFLHKEGI 156 (316)
T ss_dssp SCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEES-CS-EEETTCCEEEEEEES-SCCSEEEEEETTC
T ss_pred CCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecC-CC-ccCCCCeEEEEEcCC-CCCcEEEEEECCC
Confidence 999999999999987532 223456677777543 3443322 22 378999999999995 4567899999988
Q ss_pred eeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEEe---cceEeeCCCcccccCCCc
Q psy8823 175 AILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVEF---APVITVPKPRLGQALQYD 242 (386)
Q Consensus 175 ~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~ 242 (386)
.+...... ......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|.. +|.+...+. ..+.+|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~ 235 (316)
T 3vh8_G 157 SKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGES 235 (316)
T ss_dssp CSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSC
T ss_pred ccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCc
Confidence 76432211 1245679999999999999999999976631 24566777753 445554433 36788999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc-----eeeE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT-----SEKT 317 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~ 317 (386)
++|.|.+. .|.+.+.|++++..... .... ...........|.|.+++ |+|.|+|.|.|..+. .+..
T Consensus 236 v~L~C~~~-~~~~~~~W~k~g~~~~~--~~~~----~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~ 306 (316)
T 3vh8_G 236 VTLSCSSR-SSYDMYHLSREGGAHER--RLPA----VRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDP 306 (316)
T ss_dssp CEEEEEES-SCCSEEEEEETTSSCCE--EEEC----EECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCC
T ss_pred EEEEEECC-CCCcEEEEEECCCcCCC--ceec----eeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCc
Confidence 99999996 57789999999977221 1110 011112235789999999 999999999998763 4556
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|.+.|
T Consensus 307 ~~l~V~g~p 315 (316)
T 3vh8_G 307 LLVSVTGNP 315 (316)
T ss_dssp EEC------
T ss_pred EEEEEeCCC
Confidence 777777655
No 61
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=100.00 E-value=8.7e-32 Score=225.90 Aligned_cols=238 Identities=18% Similarity=0.252 Sum_probs=175.6
Q ss_pred ceeeecCCcEEEEEEEee-CCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc---CCC
Q psy8823 33 EQIKDIGGTVELKCSVQY-AQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI---QET 106 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---~~~ 106 (386)
+..+.+|++++|.|.+.+ .|.+ .+.|++++..+.. ... .++ ..|.+..+ +.+
T Consensus 12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---------~~~-~~~------------~~~~~~~~~~~~~~ 69 (265)
T 2oz4_A 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---------TVT-YGN------------DSFSAKASVSVTAE 69 (265)
T ss_dssp CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---------EEE-ECS------------SEEEEEEEEEECGG
T ss_pred CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---------eEe-eCC------------CeEEEEeecccccc
Confidence 346889999999999997 6655 8999998865421 000 000 03444444 778
Q ss_pred CCeE--EEEEeEEcccceeeeEEEEEEecC--CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 107 DAGY--YRCQVIIGINNKISAEVDLQVRRP--PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 107 d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
|+|. |+|.+.+..+. .+..+.|.|... |.+.. ....+.+|+.++|.|.+. |.+.++| +|..+....
T Consensus 70 d~g~g~Y~C~a~n~~~~-~~~~~~l~V~~~p~p~~~~---~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-- 139 (265)
T 2oz4_A 70 DEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVIL---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-- 139 (265)
T ss_dssp GCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEE---SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS--
T ss_pred cCCcceEEEEEecCCCC-cEEEEEEEEeCCCCceeec---CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC--
Confidence 8885 99999986543 456778888763 33332 234578899999999998 8899999 676653222
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCC-CCce--eeeEEEEEEecceEeeC--CCcccccCCCcEEEEEEEEecCCCee
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGV-GKGT--RRNIAVEVEFAPVITVP--KPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
....|.|..+..+|+|.|+|.+.|.. +... +..+.|.|.++|.+... +....+.+|+.+.|.|.+.|+|.|.+
T Consensus 140 --~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i 217 (265)
T 2oz4_A 140 --PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217 (265)
T ss_dssp --SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred --CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeE
Confidence 23568899999999999999998644 5422 36788899998887543 33556788999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|++++.. ... .+.+ ..+..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 218 ~W~~~~~~--~~~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 218 KCLKDGTF--PLP----------------IGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEEETTTE--ECC----------------TTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECCcc--cCC----------------CCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 99999872 111 1112 24788999999999999999999999998864
No 62
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-30 Score=237.61 Aligned_cols=331 Identities=15% Similarity=0.202 Sum_probs=200.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc-ccCCcee-E--EeccceeeecCCCcceEEEEEc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP-ISTGSSL-I--IRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|....+.+|++|+|.|.+.+.+. ..+.|||+........+. ....... . ...+|+.+..+...++++|.|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 356677999999999999985432 569999974322111111 1111110 0 1235676665555667899999
Q ss_pred ccCCCCCeEEEEEeEEccc----------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC
Q psy8823 102 DIQETDAGYYRCQVIIGIN----------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT 164 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~ 164 (386)
+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.......|+.++|.|.+.+. |.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9999999999999986431 0 112345677763 33332111111101246889999999876 65
Q ss_pred C-eEEEEEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee----------EEEEEEe-
Q psy8823 165 P-RISWRRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN----------IAVEVEF- 224 (386)
Q Consensus 165 ~-~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~----------~~l~v~~- 224 (386)
+ .++|++++..... ..+.....+.|.|.+...+ .|.|+|.+.|..+...... ..+.+..
T Consensus 166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p 244 (512)
T 1zvo_C 166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ 244 (512)
T ss_pred ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence 4 8999996543210 0111223456889888877 8999999999876532111 1233322
Q ss_pred ---------------------------------------------------cceEee-CCCcccccCCCcEEEEEEEEec
Q psy8823 225 ---------------------------------------------------APVITV-PKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 225 ---------------------------------------------------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
+|.+.+ ++....+.+|+.++|.|.+.|.
T Consensus 245 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~ 324 (512)
T 1zvo_C 245 PQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS 324 (512)
T ss_pred CchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece
Confidence 233322 2222345679999999999986
Q ss_pred CCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE-ec--C
Q psy8823 253 PPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES-II--P 326 (386)
Q Consensus 253 p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~-~~--p 326 (386)
+++ .++|++++.. +...... ......+..+...+.|.|..+..+|+|.|+|.|.|..+... ...+... .. +
T Consensus 325 ~P~~~~i~W~k~g~~--~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~ 401 (512)
T 1zvo_C 325 DLKDAHLTWEVAGKV--PTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAP 401 (512)
T ss_pred ECCCeEEEEEECCEe--ccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCC
Confidence 443 8999999987 3211110 01111112223457899999999999999999999987654 2222221 11 1
Q ss_pred CCCCC--CCCceeecCccee-eeEEecC-CC----CCcccccceeeec
Q psy8823 327 VCPPQ--TQPSELLPLRNVN-MAVIFAE-QP----TSWEPQRKQLNCS 366 (386)
Q Consensus 327 ~~~~~--~~~~~~~~~~~~~-~~c~~~~-~p----~~W~~~~~~l~~~ 366 (386)
..|.. ..+.. .++.+. |.|.+.| +| ++|.+||+.+...
T Consensus 402 ~~p~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~ 447 (512)
T 1zvo_C 402 VKLSLNLLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTS 447 (512)
T ss_pred CCCEEEEEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCc
Confidence 11110 11111 577889 9999987 34 4799999988643
No 63
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=100.00 E-value=7.4e-31 Score=225.03 Aligned_cols=260 Identities=18% Similarity=0.284 Sum_probs=187.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. .+.++.... ...+.++|.|.+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-~~~~~~~L~i~~ 68 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-------------DGLKYRIQE-FKGGYHQLIIAS 68 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCC-------------CSSSEEEEE-ETTTEEEEEESS
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEccc-------------CCCeEEEEE-CCCCEEEEEEcc
Confidence 578899989999999999999999999888899999998865421 111222211 123456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC----CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN----STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.|..+ ..+..+.|.|..+|.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (305)
T 2nzi_A 69 VTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (305)
T ss_dssp CCGGGCSEEEEEEEETTE-EEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred CChhhCeEEEEEEEcCCC-CccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence 999999999999998744 3567788888776654322 12456788999999999999999999999999987765
Q ss_pred CCceEE----eeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEE------
Q psy8823 179 TGGSIY----RGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC------ 247 (386)
Q Consensus 179 ~~~~~~----~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C------ 247 (386)
...... ....|.|.+ +..+|.|.|+|.+.|..+. ....+.|.|...|...... ......+..+.|.|
T Consensus 148 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~p~~~-~~~~~~~~~v~l~w~~p~~~ 225 (305)
T 2nzi_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASD 225 (305)
T ss_dssp SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCCCCCEEE-EEESCCSSCEEEEEECCSCC
T ss_pred CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCCCCCCCc-eeeeccCCEEEEEEcCCccC
Confidence 443332 246799999 9999999999999999887 5667888887655321110 01112234444444
Q ss_pred --------EEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 248 --------HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 248 --------~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
.+...+.+...|.+.+.. ....|.|.++...+.|.|+|.|.|..|....+..
T Consensus 226 g~~~i~~y~v~~~~~~~~~w~~~~~~--------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~ 285 (305)
T 2nzi_A 226 GGSKITNYIVEKCATTAERWLRVGQA--------------------RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEP 285 (305)
T ss_dssp SBSCEEEEEEEEEETTSCCEEEEEEE--------------------SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCC
T ss_pred CCCceeEEEEEEecCCCCccEECccc--------------------cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCC
Confidence 444444444444433221 2557899999999999999999999998776543
No 64
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=7.7e-31 Score=230.47 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=174.7
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+.+|++++|.|.+.+.|.+.+.|++++... . .....|.|.+++.+|+|.|+|
T Consensus 106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------~------------~~~~~L~i~~v~~~d~G~Y~C 159 (363)
T 1wio_A 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------I------------QGGKTLSVSQLELQDSGTWTC 159 (363)
T ss_dssp SSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------E------------EESSEEEECSBCGGGCEECEE
T ss_pred eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------c------------ccceEEEEeeCChhcCCEEEE
Confidence 45789999999999988888899999986432 0 012389999999999999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCC--------C
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPT--------G 180 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~--------~ 180 (386)
.+.+. .......+.+.|..+|... ....+.+|+.+.|.|.+.+ .|.+.++|++++..+... .
T Consensus 160 ~a~~~-~~~~~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~ 234 (363)
T 1wio_A 160 TVLQN-QKKVEFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234 (363)
T ss_dssp EEEET-TEEEEECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSS
T ss_pred EEecC-CCeEEEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCC
Confidence 99875 3444556677776555432 4567889999999998877 778899999999876552 2
Q ss_pred ceEE------------e--eeEEEECCCCCCCCeEEEEEEecC--CCCceeeeEEEEEEecceEeeCCCcccccCCCcEE
Q psy8823 181 GSIY------------R--GSILKIPQITKEDRGTYYCVAENG--VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244 (386)
Q Consensus 181 ~~~~------------~--~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~ 244 (386)
.... . ...|.|.+++.+|+|.|+|.+.|. .+. .+..+.|.|... .|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~-~~~~~~l~V~~v-------------~g~~~~ 300 (363)
T 1wio_A 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRA-------------TQLQKN 300 (363)
T ss_dssp CEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC-EEEEEEEEEEEE-------------CCCSSS
T ss_pred eeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe-EEEEEeEEEEEe-------------cCCCee
Confidence 2211 1 338999999999999999999999 775 667777777621 188899
Q ss_pred EEEEEEecCCCe--eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 245 LECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 245 l~C~~~g~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|.+.|.|+|. +.|++++.. +.. ...|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus 301 l~C~~~g~p~p~~~i~W~~~~~~--~~~----------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 301 LTCEVWGPTSPKLMLSLKLENKE--AKV----------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEEEEESSCCTTCCEEEECSSSS--CSE----------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred EEEEEccccCCCccEEEEeCCCc--eee----------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 999999999987 999999976 321 344678999999999999999965 55566666655
No 65
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.97 E-value=3.1e-30 Score=224.75 Aligned_cols=281 Identities=15% Similarity=0.238 Sum_probs=176.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ .+.+.|+|+........+ ... .+..... ..+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 35566789999999999998763 577999997422111000 000 0110000 1345655544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~ 176 (386)
++.+|+|.|+|.+.+.. ........|.|.. +|.+....+. ..+.+|+.++|.|.+.|. |. +.++|++++..+
T Consensus 86 v~~~D~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~ 163 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNM-AYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS 163 (344)
T ss_dssp CCGGGCEEEEEEETTTT-CEECCCEEEEECSSCCBCCEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred CCcccCEEEEEEEecCc-ceecCcEEEEEecCCCCCCeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence 99999999999997632 2333456777763 3333322111 124689999999999887 54 699999998653
Q ss_pred C--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE----------------------EEEec
Q psy8823 177 L--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV----------------------EVEFA 225 (386)
Q Consensus 177 ~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l----------------------~v~~~ 225 (386)
. .........+.|.|.++..+| |.|+|.+.|..+.. ....+.+ .+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (344)
T 1za6_B 164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE 242 (344)
T ss_dssp TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence 1 111222234579999998878 99999999977642 1122211 12345
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
|.+....+......|..++|.|.+.|.++ +.+.|+++|.. +............+......+.|.|.....+|+|.|
T Consensus 243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Y 320 (344)
T 1za6_B 243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF 320 (344)
T ss_dssp CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSC--CCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEE
T ss_pred CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeE--CCCcEecceEECCCCcEEEEEEEEEChHHccCCCeE
Confidence 66555443333345667999999999633 48999999987 332221111111111222345677877788889999
Q ss_pred EEEEEcCCCcee
Q psy8823 304 ICRAANKLGTSE 315 (386)
Q Consensus 304 ~C~a~n~~g~~~ 315 (386)
+|.|.|......
T Consensus 321 tC~a~~~~l~~~ 332 (344)
T 1za6_B 321 SCSVMHEALHNH 332 (344)
T ss_dssp EEEEECTTSTTS
T ss_pred EEEEEcCCCCCC
Confidence 999999876533
No 66
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.97 E-value=2.5e-30 Score=220.22 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=183.4
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CCeEEEEE-cCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TPRISWRR-ENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+....... . ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~ 88 (291)
T 1qz1_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88 (291)
T ss_dssp SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE
T ss_pred CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe
Confidence 3455788999999999998876 68999999 666665433221 1 24689999999999999999999988765
Q ss_pred eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 214 TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 214 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......++... ....|.|.
T Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~ 160 (291)
T 1qz1_A 89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR 160 (291)
T ss_dssp EEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC--------TTSCEEET
T ss_pred eEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc--------cCCcEEEc
Confidence 6778889998889888877778889999999999999999999999999987332222222211 24579999
Q ss_pred ecccCCCeEEEEEEEcCCCce--eeEEEEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeec
Q psy8823 294 TIEKRQYGSYICRAANKLGTS--EKTVELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~ 366 (386)
++..+|+|.|+|.|.|..+.. ...+.|.|..+|...... ....+..|+.++|.|.+.+.| ++|++++..+..+
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~ 240 (291)
T 1qz1_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240 (291)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred cCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence 999999999999999986543 356677776666533322 234567889999999998877 6999999998876
Q ss_pred c----cc------eeeeeeeeecccccCC
Q psy8823 367 S----LL------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 ~----~~------~~~~i~~v~~~d~~~~ 385 (386)
. ++ ..|.|..++.+|+..|
T Consensus 241 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 269 (291)
T 1qz1_A 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEY 269 (291)
T ss_dssp --CCSSEEECTTSCEEEECSCCGGGCEEE
T ss_pred CCCCcceEEcCCCcEEEEEecChhcCEEE
Confidence 5 22 2699999999999765
No 67
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.97 E-value=5.5e-30 Score=230.91 Aligned_cols=279 Identities=17% Similarity=0.254 Sum_probs=180.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEee-CCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQY-AQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+....+.+|+.++|.|.+.+ .|.+ .|.|++++..+....... .......+..+. ....|.|.
T Consensus 116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~--~~~~~~~~~~~~-------~~~~L~i~ 186 (438)
T 1qgc_4 116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS--WTDQDSKDSTYS-------MSSTLTLT 186 (438)
T ss_dssp CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE--EECCCTTTCCEE-------EEEEEEEE
T ss_pred CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec--cccccCCCCcEE-------EEEEEEEe
Confidence 566665444444457889999999986 5655 899999886542210000 000000011111 13489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Cee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNA 175 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~ 175 (386)
+++.+|+|.|+|.+.|..+.. .+.+.+.. ++... ..+....+.+|+.++|.|.+.|.| .+.+.|+++ +..
T Consensus 187 ~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~ 262 (438)
T 1qgc_4 187 KDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVML-VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKR 262 (438)
T ss_dssp HHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEE-EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTE
T ss_pred CcccCCCCeEEEEEEecccCC---ceecccccccceeEE-ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCC
Confidence 999999999999999865442 22333322 11111 123456788999999999999887 678999997 433
Q ss_pred eCC-----------------CCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCC----ceeeeEEEEEE----e
Q psy8823 176 ILP-----------------TGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGK----GTRRNIAVEVE----F 224 (386)
Q Consensus 176 ~~~-----------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~----~ 224 (386)
+.. ....... ...|.|.+++.+|+|.|+|.+.|..+. .......+.|. .
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~ 342 (438)
T 1qgc_4 263 LEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTT 342 (438)
T ss_dssp EEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCB
T ss_pred cEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCC
Confidence 210 1111111 348999999999999999999984331 12234566665 3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+....+...+.+|+.++|.|.+.|. |.+ .+.|++++..+........ . ........+.|.|.++..+| |.
T Consensus 343 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~--~--~~g~~~~~s~L~i~~~~~~d-g~ 417 (438)
T 1qgc_4 343 PPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV--L--QSDLYTLSSSVTVPSSTWPS-ET 417 (438)
T ss_dssp CCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCE--E--ETTEEEEEEEEEEEEEHHHH-SC
T ss_pred CCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCcc--c--cCCcEEEEEEEEEehhhcCC-ce
Confidence 5555544445567789999999999997 888 9999999876322111111 1 11122235679999999889 99
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|+|.|.|..|.......+
T Consensus 418 Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 418 VTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp CEEEEEEGGGTEEEEEEC
T ss_pred EEEEEEeCCCCcceeeec
Confidence 999999999987766654
No 68
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.97 E-value=3.4e-28 Score=215.79 Aligned_cols=299 Identities=17% Similarity=0.245 Sum_probs=203.4
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEec--CCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKV--DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.|.. +.+..+.+|++++|.|.+.+.|.+.|.|+++ +..+.... ...+.++....+ ..+++|.|.
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~---------~~~~~~~~~~~~--~~~~~L~i~ 68 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD---------KSLDGRIEVKGQ--HGSSSLHIK 68 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC-----------CCSSSSEEEEEC--SSEEEEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCc---------CCCCCeEEEecc--CCcceEEEc
Confidence 356665 5667788999999999999999999999998 43321100 001234433322 346699999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+... .....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....
T Consensus 69 ~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~ 146 (389)
T 2jll_A 69 DVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAPKFISN-QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT 146 (389)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECCS-CCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC
T ss_pred ccChhhCEEEEEEEEeCCCC-cceEEEEEEEeCCEEecC-cceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC
Confidence 99999999999999976554 477888999888877653 3445678999999999999999999999999988765431
Q ss_pred --eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe----
Q psy8823 182 --SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA---- 251 (386)
Q Consensus 182 --~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---- 251 (386)
... ....|.|.++..+|.|.|+|.+.|..|. ....+.+.+...|..... .......+..+.|.|....
T Consensus 147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g 224 (389)
T 2jll_A 147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGG 224 (389)
T ss_dssp TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTT
T ss_pred ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCC
Confidence 111 2357999999999999999999999887 445566666544421100 0111223567888887422
Q ss_pred cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 252 YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 252 ~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.. .+.|.+++..... ... .......+.|.++...+.|.|+|.|.|..|....+..+.+...+..+
T Consensus 225 ~pi~~y~v~~~~~~~~~~~------~~~-----~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~ 293 (389)
T 2jll_A 225 VPIHHYQVDVKEVASEIWK------IVR-----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293 (389)
T ss_dssp SCEEEEEEEEEETTCSCCE------EEE-----CSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCC
T ss_pred cceEEEEEEEEECCCcccE------Eee-----ccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCC
Confidence 1222 4677776543110 000 01134679999999999999999999999987766556566555434
Q ss_pred CCCCCceee--cCcceeeeEEe
Q psy8823 330 PQTQPSELL--PLRNVNMAVIF 349 (386)
Q Consensus 330 ~~~~~~~~~--~~~~~~~~c~~ 349 (386)
+..+..... ....+.+.+..
T Consensus 294 p~~p~~~~~~~~~~~v~l~W~~ 315 (389)
T 2jll_A 294 PSPPSIHGQPSSGKSFKLSITK 315 (389)
T ss_dssp CCCCCEEEEEETTTEEEEEECC
T ss_pred CCCCccccccCcCCEEEEEEEC
Confidence 433333222 34456666654
No 69
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=216.33 Aligned_cols=243 Identities=22% Similarity=0.398 Sum_probs=174.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCC-CCCeEEEEEE
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITK-EDRGTYYCVA 206 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~-~d~g~y~C~~ 206 (386)
.+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+........ ....|.|.+++. +|+|.|+|.+
T Consensus 5 ~~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 5 EPPRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred cCCeeeec-CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 45655544 4566789999999999999999999999999988754332221 126799999998 9999999999
Q ss_pred ecCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce-eEEee
Q psy8823 207 ENGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH-YSISH 278 (386)
Q Consensus 207 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~ 278 (386)
.|..+. .+..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +..... .....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~--~~~~~~~~~~~~ 160 (304)
T 2yd9_A 84 QNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP--VDPSASNGRIKQ 160 (304)
T ss_dssp ECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEE--CCGGGGTTSEEE
T ss_pred ECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEE--CcCCCCcceEEe
Confidence 998887 567788888876 5666666667788899999999999999999999999987 332211 11100
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE-EEEEEEe---cCCCCCCCCCceeecCcceeeeEEecCCC-
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT-VELFESI---IPVCPPQTQPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~---~p~~~~~~~~~~~~~~~~~~~~c~~~~~p- 353 (386)
...+.|.|.++..+|+|.|+|.|.|..|..... ..+.|.. .|.....+....+..|+.++|.|.+.|.|
T Consensus 161 ------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~ 234 (304)
T 2yd9_A 161 ------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234 (304)
T ss_dssp ------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred ------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence 124589999999999999999999999977643 4555542 23222233445678899999999998877
Q ss_pred --CCcccccceeeecccce--eeeeeeeecccccCC
Q psy8823 354 --TSWEPQRKQLNCSSLLY--QCVLPLVDRQDRLMH 385 (386)
Q Consensus 354 --~~W~~~~~~l~~~~~~~--~~~i~~v~~~d~~~~ 385 (386)
++|++++..+..+.+.. .+.|.....+|++.|
T Consensus 235 p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y 270 (304)
T 2yd9_A 235 PYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANY 270 (304)
T ss_dssp CEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEE
T ss_pred CEEEEEECCEECCCcccccCCcEEEEEcccccCEEE
Confidence 69999999998765432 333333344677644
No 70
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.97 E-value=1.8e-30 Score=224.32 Aligned_cols=276 Identities=15% Similarity=0.205 Sum_probs=172.7
Q ss_pred cCCeeeeeccceeeecC--CcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIG--GTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G--~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
.+|.+.+.+.......| +.++|.|.+.+. | .+.|+|+|++..+..... .......++.+.. ...|
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~----~~~~~~~~g~~~~-------~s~l 74 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS----TASTTQEGELAST-------QSEL 74 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE----EEEEEEETTEEEE-------EEEE
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEccccee----cCCcCccCCcEEE-------EEEE
Confidence 45677766554443444 699999999875 3 468999998866532100 0000111222222 2368
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC---eEEEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP---RISWRR 171 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~---~v~W~~ 171 (386)
.|.+...+|+|.|+|++.|..+. ....+.+.+ ...|.+....+....+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 75 ~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k 153 (323)
T 2wqr_A 75 TLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSR 153 (323)
T ss_dssp EEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEE
T ss_pred EEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEE
Confidence 89998889999999999976432 222222111 1123232233333346789999999999886 445 899999
Q ss_pred cCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE----EEecceEeeCCCccccc
Q psy8823 172 ENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE----VEFAPVITVPKPRLGQA 238 (386)
Q Consensus 172 ~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~ 238 (386)
+++...... ......+.|.|.++..+|+|.|+|.+.|.... ......+. +..+|.+...+......
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~~ 232 (323)
T 2wqr_A 154 ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPEWPG 232 (323)
T ss_dssp TTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCCCTT
T ss_pred CCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCChHHh
Confidence 754332211 11123457999999999999999999997643 22222332 23566655433322233
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEE--eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSI--SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.|+.++|.|.+.|. |++ .+.|++++.. +........ ....+..+...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 233 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 233 SRDKRTLACLIQNFMPEDISVQWLHNEVQ--LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp CTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred cCCcEEEEEEeeeeeCCCcEEEEEECCEE--CCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 49999999999984 444 7999999987 433211110 0011112234578999999999999999999999877
No 71
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=215.16 Aligned_cols=235 Identities=17% Similarity=0.297 Sum_probs=180.1
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEE-cCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRR-ENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+....+.+|+.++|.|.+.+.|. .+.|++ ++..+......... ...|.|.+++.+|+|.|+|.+.|..+...+.
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~ 89 (291)
T 2wim_A 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 89 (291)
T ss_dssp CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE
T ss_pred ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEE
Confidence 45667899999999999988764 899999 56555443333221 3589999999999999999999988875567
Q ss_pred eEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 217 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+.+.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.........++... ....|.|.++.
T Consensus 90 ~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~ 161 (291)
T 2wim_A 90 TVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--------ANNNLQILNIN 161 (291)
T ss_dssp EEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC--------TTSCEEETTCC
T ss_pred EEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc--------cCCCEEEEecc
Confidence 8888888888777666677788999999999999999999999999877332223333221 24579999999
Q ss_pred cCCCeEEEEEEEcCCCcee--eEEEEEEEecCCCCCCCC--CceeecCcceeeeEEecCCC---CCcccccceeeecccc
Q psy8823 297 KRQYGSYICRAANKLGTSE--KTVELFESIIPVCPPQTQ--PSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL 369 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p~~~~~~~--~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~ 369 (386)
.+|+|.|+|.|.|..+... ..+.+.+..+|....... ...+..|+.++|.|.+.+.| ++|+++|..+..+.++
T Consensus 162 ~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~ 241 (291)
T 2wim_A 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241 (291)
T ss_dssp GGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTE
T ss_pred hhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccE
Confidence 9999999999999986543 456666766665433222 34566889999999998887 6999999998877654
Q ss_pred e------eeeeeeeecccccCC
Q psy8823 370 Y------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 370 ~------~~~i~~v~~~d~~~~ 385 (386)
. .|.|..+..+|++.|
T Consensus 242 ~~~~~~~~L~i~~~~~~d~G~Y 263 (291)
T 2wim_A 242 ILKGSNTELTVRNIINSDGGPY 263 (291)
T ss_dssp EECSTTCEEEEESCCSTTCEEE
T ss_pred EEcCCccEEEEeeCCcccCEEE
Confidence 3 699999999999765
No 72
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=202.40 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=174.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.+.|..+. ..+.+.
T Consensus 9 ~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~s---~~~~l~ 79 (262)
T 3rjd_A 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGLSGRS---DPIQLE 79 (262)
T ss_dssp CCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEESSSCCC---CCEEEE
T ss_pred CcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------CCeEEEecCCcccCeEEEEEEecCCcc---ccEEEE
Confidence 34568899999999999888877 89999999887543 456999999999999999999886543 467788
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
|..++.... +....+.+|+.+.|.|.+ .+.|.+.+.|++++.. +... .....|.|.++..+|+
T Consensus 80 v~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~--~~~~-------------~~~~~l~i~~~~~~d~ 143 (262)
T 3rjd_A 80 IHRGWLLLQ-VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKA--FKFF-------------HWNSNLTILKTNISHN 143 (262)
T ss_dssp EECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEE--EEEE-------------EECCCEEESSCCGGGC
T ss_pred EeccceEec-CCCeEEecCCeEEEEEEccCCCCCceEEEEECCcc--cccc-------------CCCCeEEEEECChhhC
Confidence 877665443 344567789999999999 6777789999999987 3211 1256799999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecCcceeeeEEecCCC--------CCcccccceeeecccce
Q psy8823 301 GSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPLRNVNMAVIFAEQP--------TSWEPQRKQLNCSSLLY 370 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~~~~~c~~~~~p--------~~W~~~~~~l~~~~~~~ 370 (386)
|.|+|.|.|..+.....+.|.|...+..+. ......+..|+.++|.|.+.+.| ++|++++..+.......
T Consensus 144 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~ 223 (262)
T 3rjd_A 144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223 (262)
T ss_dssp EEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCC
T ss_pred EEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCc
Confidence 999999999998888888998886433222 12345578899999999998875 37999999998777767
Q ss_pred eeeeeeeecccccCC
Q psy8823 371 QCVLPLVDRQDRLMH 385 (386)
Q Consensus 371 ~~~i~~v~~~d~~~~ 385 (386)
.|.|..++.+|++.|
T Consensus 224 ~L~i~~v~~~d~G~Y 238 (262)
T 3rjd_A 224 EYQILTARREDSGLY 238 (262)
T ss_dssp EEEESSCCGGGCEEE
T ss_pred eEEEEEechhhCeEE
Confidence 899999999999765
No 73
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=1.3e-28 Score=222.18 Aligned_cols=273 Identities=15% Similarity=0.169 Sum_probs=172.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++...... .... ....+.+.. ...|.|.
T Consensus 123 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~-----~~~~-~~~~~~~~~-------~s~L~i~ 189 (444)
T 1igt_B 123 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-----TFPA-VLQSDLYTL-------SSSVTVT 189 (444)
T ss_dssp CCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-----ECCC-EEETTEEEE-------EEEEEEC
T ss_pred CCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE-----ecCc-cccCCcEEE-------EEEEEEc
Confidence 3444443333345799999999999874 655 89999987642100 0000 011122222 2379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEE------------------ecCCeeecCCCceEE-EeCCccEEEEEEeeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQV------------------RRPPVISDNSTRSLV-VSEGQPVQLECFAGGH 162 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~~~ 162 (386)
+++.+| |.|+|.+.|..+.. .....+.+ ..+|.+....+.... +.+|+.++|.|.+.|.
T Consensus 190 ~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~ 267 (444)
T 1igt_B 190 SSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDV 267 (444)
T ss_dssp STTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEE
T ss_pred hhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeec
Confidence 999999 99999999876543 12222221 113433222222212 4689999999999988
Q ss_pred C----CCeEEEEEcCeeeCCCCce---------EEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE--EEEecc
Q psy8823 163 P----TPRISWRRENNAILPTGGS---------IYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV--EVEFAP 226 (386)
Q Consensus 163 ~----~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p 226 (386)
+ .+.++|++++..+...... ....+.|.|.++..+|+|.|+|.+.|..+.. ....+.+ .+..+|
T Consensus 268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P 347 (444)
T 1igt_B 268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAP 347 (444)
T ss_dssp CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCC
T ss_pred ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCC
Confidence 4 3589999999876533211 1234579999999999999999999987763 1233333 455677
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
.+...+.......+..++|.|.+.| +|++ .+.|++++.. +............+......+.|.|.....+|+|.|+
T Consensus 348 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Yt 425 (444)
T 1igt_B 348 QVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKT--ELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS 425 (444)
T ss_dssp EEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred EEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEE--ccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEE
Confidence 7665444332233445999999998 5655 8999999987 3221111111111112223456788888888899999
Q ss_pred EEEEcCCCc
Q psy8823 305 CRAANKLGT 313 (386)
Q Consensus 305 C~a~n~~g~ 313 (386)
|.|.|....
T Consensus 426 C~a~n~~l~ 434 (444)
T 1igt_B 426 CSVVHEGLH 434 (444)
T ss_dssp EEEECTTSG
T ss_pred EEEECCCcC
Confidence 999998643
No 74
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=216.75 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=175.6
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
...+.+|+.++|.|.+.+. |.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..+. ....+.|
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l 93 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKL 93 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECC
T ss_pred eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEE
Confidence 4678899999999999877 7789999999988865443322 3468999999999999999999998776 3445555
Q ss_pred EEEecceEeeCCCcccccCCCcEEEEEEEEe----------cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEE
Q psy8823 221 EVEFAPVITVPKPRLGQALQYDMDLECHVEA----------YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTI 290 (386)
Q Consensus 221 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (386)
.|...|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++.. +....++..... .....|
T Consensus 94 ~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~--~~~~~~~~~~~~-----~~~~~L 166 (317)
T 2y25_A 94 VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVT-----GEQIWL 166 (317)
T ss_dssp STHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSB--CCCCSSEEEEEC-----SSEEEE
T ss_pred EEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEE--CCCCCCeEEecc-----CCEEEE
Confidence 5554443333333445667888888888877 78889999999988 544444433211 135679
Q ss_pred EEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe----------------cCCCCC-----CCCCceeecCcceeeeEEe
Q psy8823 291 RVITIEKRQYGSYICRAANKLGTSEKTVELFESI----------------IPVCPP-----QTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 291 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~----------------~p~~~~-----~~~~~~~~~~~~~~~~c~~ 349 (386)
.|.++..+|+|.|+|.|.|..|....++.+.+.. .+..++ .+....+..|+.++|.|.+
T Consensus 167 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 246 (317)
T 2y25_A 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246 (317)
T ss_dssp EEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE
T ss_pred EECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE
Confidence 9999999999999999999999998888876531 111111 1223567789999999999
Q ss_pred cCCC---CCcccccceeeecccc---------eeeeeeeeecccccCC
Q psy8823 350 AEQP---TSWEPQRKQLNCSSLL---------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~~~~~l~~~~~~---------~~~~i~~v~~~d~~~~ 385 (386)
.+.| ++|++++..+..+.++ ..|.|..|+.+|++.|
T Consensus 247 ~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 294 (317)
T 2y25_A 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294 (317)
T ss_dssp ECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEE
T ss_pred ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEE
Confidence 8888 7999999999776542 2799999999999765
No 75
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.96 E-value=1.4e-28 Score=213.07 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=170.7
Q ss_pred ceEEEeCCccEEEEEEeeee---------CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCe-EEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGH---------PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG-TYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 212 (386)
..+.+.+|+.+.|.|.+.+. |.+.++|++++..+...... ..+..|.|.+++.+|+| .|+|.+.|..+.
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~ 115 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGD 115 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence 34568899999999999774 55789999999776543333 45778999999999999 999999998876
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
.....+.+.+..+|.+........+.+|+.+.|.|.+.|.| .+.+.|++++..+.. ...++.. ....|.
T Consensus 116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~-~~~~~~~---------~~~~L~ 185 (329)
T 3oq3_B 116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII-DGTKYSQ---------SGQNLI 185 (329)
T ss_dssp EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC-SSSSEEE---------ETTEEE
T ss_pred eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC-CCceEec---------CCCEEE
Confidence 33333334444455443333345567899999999999999 899999999988321 2222221 247899
Q ss_pred EeecccCCCeEEEEEEEcC--CCceeeE----EEEEEEecCCCCC---CCCCceeecCcceeeeEEecCCC-----C--C
Q psy8823 292 VITIEKRQYGSYICRAANK--LGTSEKT----VELFESIIPVCPP---QTQPSELLPLRNVNMAVIFAEQP-----T--S 355 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~v~~~p~~~~---~~~~~~~~~~~~~~~~c~~~~~p-----~--~ 355 (386)
|.++..+|+|.|+|.|.|. .|..... +.|.|...|.... .+....+..|+.++|.|.+.+.| + .
T Consensus 186 I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~ 265 (329)
T 3oq3_B 186 IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLID 265 (329)
T ss_dssp ECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEE
T ss_pred EeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEE
Confidence 9999999999999999998 6655444 6777776553211 23335677899999999998764 4 8
Q ss_pred cccccceeee-ccc------------ceeeeeeeeeccccc-CC
Q psy8823 356 WEPQRKQLNC-SSL------------LYQCVLPLVDRQDRL-MH 385 (386)
Q Consensus 356 W~~~~~~l~~-~~~------------~~~~~i~~v~~~d~~-~~ 385 (386)
|++++..+.. +.+ ...|.|..|+.+|++ .|
T Consensus 266 W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y 309 (329)
T 3oq3_B 266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTY 309 (329)
T ss_dssp EECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEE
T ss_pred EEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcE
Confidence 9999998533 221 236999999999998 44
No 76
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.96 E-value=1.4e-29 Score=219.92 Aligned_cols=236 Identities=19% Similarity=0.289 Sum_probs=112.8
Q ss_pred CceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+....+.+|+.++|.|.+.+. |.+.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|. +. ....+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l 92 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEE
Confidence 456678899999999999876 56899999999887655554455778999999999999999999998 43 4566677
Q ss_pred EEEecce----------------------EeeC----CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 221 EVEFAPV----------------------ITVP----KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 221 ~v~~~p~----------------------~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
.|...|. +..+ .....+.+|+.+.|.|.+.|.|.+.+.|++++.. +......
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~ 170 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRGEHRI 170 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC--CCTTSST
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE--Ccccccc
Confidence 7765432 1111 1123566899999999999999999999999987 4333221
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC-----CCCceeecCcceeeeEEe
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ-----TQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~-----~~~~~~~~~~~~~~~c~~ 349 (386)
.. .........|.|.++..+|+|.|+|.|.|..|....++.|.|...+..++. +....+..|+.++|.|.+
T Consensus 171 ~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~ 246 (334)
T 1ry7_B 171 GG----IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246 (334)
T ss_dssp TC----CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC
T ss_pred cc----eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE
Confidence 10 001123568999999999999999999999999999999999875443332 234567889999999999
Q ss_pred cCCC---CCccc----ccceeeecccc-----------------eeeeeeeeecccccCC
Q psy8823 350 AEQP---TSWEP----QRKQLNCSSLL-----------------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~----~~~~l~~~~~~-----------------~~~~i~~v~~~d~~~~ 385 (386)
.+.| ++|++ ||..+..+... ..|.|..++.+|+..|
T Consensus 247 ~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 306 (334)
T 1ry7_B 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306 (334)
T ss_dssp BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEE
T ss_pred ecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEE
Confidence 8888 69999 78777655431 1599999999999865
No 77
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=5.2e-28 Score=211.36 Aligned_cols=232 Identities=15% Similarity=0.147 Sum_probs=147.0
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----------CCeEEEEEcCee------eC---CCCceEEeeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----------TPRISWRRENNA------IL---PTGGSIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~------~~---~~~~~~~~~~~l~i~~~~~~d~g~ 201 (386)
...+.+.+|+.+.|.|.+.+.| .+.+.|++++.. +. ........+..|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 4556788999999999998755 489999998842 11 112233456789999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeC----CCcccccCCCcEEEEEEE-----EecCCCeeEEEeCCeeeeeecCc
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVP----KPRLGQALQYDMDLECHV-----EAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
|+|.+.|..+. ....+.|.|..+|..... +....+.+|+.+.|.|.+ .|.|.+.+.|++++.. +....
T Consensus 94 Y~C~a~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~--l~~~~ 170 (349)
T 4dep_C 94 YTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK--IQNFN 170 (349)
T ss_dssp EEEEEECSSCE-EEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE--CCSCS
T ss_pred EEEEEecCCce-EEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEE--CCCcc
Confidence 99999998765 456777888776542221 223456789999999985 7789999999999987 43332
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC-Cce---eeEEEEEEEecC------CCCCCCCC--ceeecC
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL-GTS---EKTVELFESIIP------VCPPQTQP--SELLPL 340 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~p------~~~~~~~~--~~~~~~ 340 (386)
.+.. ....|.|.++..+|+|.|+|.|.|.. |.. +..+.|.|...+ ........ ..+..|
T Consensus 171 ~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G 241 (349)
T 4dep_C 171 NVIP---------EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG 241 (349)
T ss_dssp SEEE---------ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred ceee---------cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence 2221 24679999999999999999999997 554 566777776532 11111111 167788
Q ss_pred cceeeeEEec----CCC---CCcccccceeee-cccc-----------------eeeeeeeeecccc-cCC
Q psy8823 341 RNVNMAVIFA----EQP---TSWEPQRKQLNC-SSLL-----------------YQCVLPLVDRQDR-LMH 385 (386)
Q Consensus 341 ~~~~~~c~~~----~~p---~~W~~~~~~l~~-~~~~-----------------~~~~i~~v~~~d~-~~~ 385 (386)
+.++|.|.+. +.| +.|++|+..+.. +.+. ..|.|..|+.+|+ +.|
T Consensus 242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y 312 (349)
T 4dep_C 242 EELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312 (349)
T ss_dssp ---CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------C
T ss_pred CcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcE
Confidence 9999999998 444 799999999877 2111 1399999999999 765
No 78
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=207.19 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=157.7
Q ss_pred CCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeC----C-C----CceE---------EeeeEEEECCCCCCCCe
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAIL----P-T----GGSI---------YRGSILKIPQITKEDRG 200 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~----~-~----~~~~---------~~~~~l~i~~~~~~d~g 200 (386)
..+..+.+.+|+++.|.|.+.+. |.+.+.|++++.... . . .... .....|.|.+++.+|+|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G 87 (327)
T 2wng_A 8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAG 87 (327)
T ss_dssp CCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCE
T ss_pred cCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCe
Confidence 34567789999999999999887 788999999875321 0 0 0111 23457999999999999
Q ss_pred EEEEEEecCCCCc----eeeeEEEEEEecceE-eeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce
Q psy8823 201 TYYCVAENGVGKG----TRRNIAVEVEFAPVI-TVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 201 ~y~C~~~~~~~~~----~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~ 273 (386)
.|+|.+.|..+.. ......|.|..+|.. ....+...+.+|+.+.|.|.+.|.|++ .+.|++++.. +.....
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~--l~~~~~ 165 (327)
T 2wng_A 88 TYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNE--LSDFQT 165 (327)
T ss_dssp EEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE--CCCEEE
T ss_pred EEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE--cccccc
Confidence 9999999976531 123467777765532 122334667889999999999998876 8999999987 433222
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce---eeEEEEE--EEecCCCCCCCCCceeecCcceeeeEE
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS---EKTVELF--ESIIPVCPPQTQPSELLPLRNVNMAVI 348 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~--v~~~p~~~~~~~~~~~~~~~~~~~~c~ 348 (386)
..............+.|.|.....+|.|.|+|.|.|..+.. ..+..+. +..+|.... ....+..|+.++|.|.
T Consensus 166 ~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~--~~~~~~~G~~v~l~C~ 243 (327)
T 2wng_A 166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV--TQQPVRAENQVNVTCQ 243 (327)
T ss_dssp EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEE--EEECCSSTTCCEEEEE
T ss_pred ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEE--ecCCcCCCCcEEEEEE
Confidence 11111111222235568888888888999999999998763 3333332 222222111 1111568899999999
Q ss_pred ecCC-C----CCcccccceeeecccc-------------eeeeeeeeecccccCC
Q psy8823 349 FAEQ-P----TSWEPQRKQLNCSSLL-------------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 349 ~~~~-p----~~W~~~~~~l~~~~~~-------------~~~~i~~v~~~d~~~~ 385 (386)
+.+. | ++|++||+.+..+... ..|.|..+..+|+..|
T Consensus 244 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y 298 (327)
T 2wng_A 244 VRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKL 298 (327)
T ss_dssp EEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEE
T ss_pred EccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEE
Confidence 9873 2 6899999998754211 1488999999998765
No 79
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.6e-27 Score=201.39 Aligned_cols=230 Identities=14% Similarity=0.153 Sum_probs=172.7
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+|.+.. .+....+.+|+.++|.|.+.+ .+.|++++..+ ......+..|.|.+++.+|+|.|+|.+.| +.
T Consensus 11 ~~P~i~~-~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~ 80 (290)
T 2o26_X 11 SPPSIHP-AQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL 80 (290)
T ss_dssp -CCEESS-CSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred CCCEEeC-CCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence 3455543 456778999999999999977 89999999876 11222347899999999999999999999 33
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCC-CeeEEE-eCCeeeeeecCceeEEeeeeecCceeeeEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPP-PAIVWI-KEDTQQVLTNNQHYSISHFATADEFTDTTI 290 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (386)
...+.|.|..+|.+........+.+|+.+.|.|.+.+ |. +.+.|+ +++.. +....++... ....|
T Consensus 81 --~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~--l~~~~~~~~~--------~~~~L 147 (290)
T 2o26_X 81 --TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKS--LPTDLTFVPN--------PKAGI 147 (290)
T ss_dssp --EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCC--CCTTCEEEEE--------TTTEE
T ss_pred --cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcC--CCCCCceeeC--------CCCCE
Confidence 6778888888887666666677889999999999985 77 899995 67766 4444433322 23579
Q ss_pred EEeecccCCCe-EEEEEEEcCCCcee-eEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecCCC----CCccccc
Q psy8823 291 RVITIEKRQYG-SYICRAANKLGTSE-KTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAEQP----TSWEPQR 360 (386)
Q Consensus 291 ~i~~~~~~d~G-~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~ 360 (386)
.|.++..+|+| .|+|.|.|..+... ..+.|.|...+..+| .+....+..|+.++|.|.+.+.| ++|++++
T Consensus 148 ~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~ 227 (290)
T 2o26_X 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMN 227 (290)
T ss_dssp EEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEES
T ss_pred EEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCC
Confidence 99999999999 99999999966543 357777764332222 23445778899999999998776 6799999
Q ss_pred cee----eec-----------ccceeeeeeeeecccccCC
Q psy8823 361 KQL----NCS-----------SLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 361 ~~l----~~~-----------~~~~~~~i~~v~~~d~~~~ 385 (386)
..+ ... .....|.|..|+.+|++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 267 (290)
T 2o26_X 228 PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267 (290)
T ss_dssp SSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEE
T ss_pred CCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEE
Confidence 884 211 1122699999999999765
No 80
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.95 E-value=3.1e-26 Score=208.27 Aligned_cols=260 Identities=16% Similarity=0.196 Sum_probs=166.5
Q ss_pred ecCCcEEEEEEEeeC-CC-C-cEEEEecCCccccccccccCCceeE-EeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 37 DIGGTVELKCSVQYA-QD-Y-PVIWMKVDRNKVTEPLPISTGSSLI-IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.+|+.++|.|.+.+. |. + .|.|++++..... ....... ..++.+.. ...|.|.++..+|+|.|+
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~-----~~~~~~~~~~~g~~~~-------~s~L~i~~~~~~d~g~Y~ 206 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTA-----RNFPPSQDASGDLYTT-------SSQLTLPATQCLAGKSVT 206 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccce-----EeCCceecCCCCcEEE-------EEEEEechhHcCCCceEE
Confidence 689999999999976 54 3 8999987642210 0000000 01122222 236899999999999999
Q ss_pred EEeEEcccceeeeEEEEEEe------------------cCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEE
Q psy8823 113 CQVIIGINNKISAEVDLQVR------------------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRR 171 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~------------------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~ 171 (386)
|.+.|..+...+..+.+.|. .+|.+....+....+.+|+.++|.|.+.|.++ +.++| +
T Consensus 207 C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~ 285 (475)
T 1iga_A 207 CHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T 285 (475)
T ss_pred EEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C
Confidence 99998765433444443331 13333222222223578999999999988754 58999 4
Q ss_pred cCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE---EEecceEeeCCCc-cccc
Q psy8823 172 ENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE---VEFAPVITVPKPR-LGQA 238 (386)
Q Consensus 172 ~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~~~ 238 (386)
+..+.... +.....+.|.|.++..+|+|.|+|.+.|..+.. .....+. +..+|.+...+.. ..+.
T Consensus 286 -~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~P~v~~~~~~~~~v~ 363 (475)
T 1iga_A 286 -PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELA 363 (475)
T ss_pred -CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC-ceEEEeecCCCCCCCeEEEECCChHHhc
Confidence 43332111 111234579999999999999999999987763 2222342 3567776554433 3467
Q ss_pred CCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEE--eee---eecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 239 LQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSI--SHF---ATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.|+.+.|.|.+.|.++ +.+.|+++|.. +........ ... .+......+.|.|.....+|+|.|+|.|.|..
T Consensus 364 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~ 441 (475)
T 1iga_A 364 LNELVTLTCLARGFSPKDVLVRWLQGSQE--LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA 441 (475)
T ss_pred cCCceEEEEEEeeeECCCCEEEEEECCEE--CCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCC
Confidence 8999999999998643 48999999987 433321111 111 11122245678888888899999999999987
Q ss_pred Cc
Q psy8823 312 GT 313 (386)
Q Consensus 312 g~ 313 (386)
..
T Consensus 442 l~ 443 (475)
T 1iga_A 442 LP 443 (475)
T ss_pred CC
Confidence 54
No 81
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=203.33 Aligned_cols=235 Identities=12% Similarity=0.152 Sum_probs=172.6
Q ss_pred ceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
..+.+.+|+.+.|.|.. .+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|..+... .
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s 86 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S 86 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence 35678899999999988 46788999999999988765544332 26899999999999999999999877532 4
Q ss_pred EEEEEEe------------cceEeeCCC-cccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 218 IAVEVEF------------APVITVPKP-RLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 218 ~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
+.+.|.. +|.+..... ...+.+|+.+.|.|.+. +.|.+.+.|++++.. +....++.+....
T Consensus 87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~--i~~~~~~~~~~~~--- 161 (312)
T 2y23_A 87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDR--- 161 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE--ECSSSSCEEEEET---
T ss_pred EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE--CeeCCcEEEEEcc---
Confidence 5555543 454443332 66788999999999998 889999999999988 5555544433211
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE-------------------EecCCCCCCCCCceeecCccee
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE-------------------SIIPVCPPQTQPSELLPLRNVN 344 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v-------------------~~~p~~~~~~~~~~~~~~~~~~ 344 (386)
......|.|.++..+|+|.|+|.|.|..+.....+.+.. ...|... ......+..|+.+.
T Consensus 162 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~v~~G~~~~ 240 (312)
T 2y23_A 162 NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYLSWEVTGECNVL 240 (312)
T ss_dssp TTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEEEEEEETTTEEE
T ss_pred CCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCcee-ecceEEEeCCCEEE
Confidence 113466999999999999999999876555544444310 0001100 01124677899999
Q ss_pred eeEEecCCC----CCcccccceeeecccc------eeeeeeeeecccccCC
Q psy8823 345 MAVIFAEQP----TSWEPQRKQLNCSSLL------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 345 ~~c~~~~~p----~~W~~~~~~l~~~~~~------~~~~i~~v~~~d~~~~ 385 (386)
|.|.+.+.| ++|++|+..+..+.++ ..|.|..|+.+|++.|
T Consensus 241 l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 291 (312)
T 2y23_A 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 291 (312)
T ss_dssp EEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEE
T ss_pred EEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEE
Confidence 999998866 5899999999866554 2799999999999865
No 82
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.95 E-value=2.5e-27 Score=214.60 Aligned_cols=275 Identities=13% Similarity=0.184 Sum_probs=164.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |. +.|.|++++..+.... .......++.+. ....|.|.
T Consensus 132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~-----~~~~~~~~~~~~-------~~s~L~i~ 199 (457)
T 1hzh_H 132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-----FPAVLQSSGLYS-------LSSVVTVP 199 (457)
T ss_dssp CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEE-----EEEEECTTSCEE-------EEEEEEEC
T ss_pred CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceE-----cCceECCCCCEE-------EEEEEEec
Confidence 4555554444456799999999999876 54 7899999885431100 000001112222 12479999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe-----------------cCCeeecCCCceE-EEeCCccEEEEEEeeeeC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR-----------------RPPVISDNSTRSL-VVSEGQPVQLECFAGGHP 163 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----------------~~p~~~~~~~~~~-~~~~g~~v~l~C~~~~~~ 163 (386)
+++.+| |.|+|.+.|..+.. .....+.+. .+|.+....+... .+.+|+.++|.|.+.|.+
T Consensus 200 ~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~ 277 (457)
T 1hzh_H 200 SSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVS 277 (457)
T ss_dssp SGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCC
T ss_pred ccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEccc
Confidence 999999 99999999865432 222222221 1233211111111 145799999999999875
Q ss_pred CC----eEEEEEcCeeeCCCCceE---EeeeEEEEC---CCCCCC---CeEEEEEEecCCCCc-eeeeEEE--EEEecce
Q psy8823 164 TP----RISWRRENNAILPTGGSI---YRGSILKIP---QITKED---RGTYYCVAENGVGKG-TRRNIAV--EVEFAPV 227 (386)
Q Consensus 164 ~~----~v~W~~~~~~~~~~~~~~---~~~~~l~i~---~~~~~d---~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~ 227 (386)
++ .++|++++..+....... ..++.+.+. .+...| +|.|+|.+.|..+.. ....+.+ .+..+|.
T Consensus 278 p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~ 357 (457)
T 1hzh_H 278 HEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ 357 (457)
T ss_dssp TTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE
T ss_pred CCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe
Confidence 53 899999998775332111 111222222 123444 999999999865442 1222222 3456777
Q ss_pred EeeCCCc-ccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 228 ITVPKPR-LGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 228 ~~~~~~~-~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+...+.. ..+..|+ +.|.|.+.|.+++ .+.|+++|.. +............+......+.|.+.....+|+|.|+
T Consensus 358 v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt 434 (457)
T 1hzh_H 358 VYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS 434 (457)
T ss_dssp EEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEE--CCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred EEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEE--CcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEE
Confidence 6654433 3344555 9999999997554 8999999987 4322211111111112223456777777778999999
Q ss_pred EEEEcCCCcee
Q psy8823 305 CRAANKLGTSE 315 (386)
Q Consensus 305 C~a~n~~g~~~ 315 (386)
|.|.|......
T Consensus 435 C~a~n~~l~~~ 445 (457)
T 1hzh_H 435 CSVMHEALHNH 445 (457)
T ss_dssp EEEECTTSGGG
T ss_pred EEEEECCCCCc
Confidence 99999875543
No 83
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=4.8e-27 Score=203.66 Aligned_cols=245 Identities=13% Similarity=0.185 Sum_probs=173.8
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeee----CCCeEEEEEcCee---------------e-CCC-CceE-----EeeeE
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGH----PTPRISWRRENNA---------------I-LPT-GGSI-----YRGSI 188 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~~~---------------~-~~~-~~~~-----~~~~~ 188 (386)
|......+..+.+.+|++++|.|.+.+. +.+.+.|++++.. . ... .+.. ....+
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 93 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence 3333344566789999999999999775 4457999995421 1 011 1111 12467
Q ss_pred EEECCCCCCCCeEEEEEEe-cCCCCceeeeEEEEEEecceEee--CCCcccccCC---CcEEEEEE-EEecCCCeeEEEe
Q psy8823 189 LKIPQITKEDRGTYYCVAE-NGVGKGTRRNIAVEVEFAPVITV--PKPRLGQALQ---YDMDLECH-VEAYPPPAIVWIK 261 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~g~p~~~~~W~~ 261 (386)
|.|.+++.+|+|.|+|.+. +..+. ....+.|.|..+|.+.. ......+.+| +.+.|.|. +.+.|.+.+.|++
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~ 172 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET 172 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred EEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence 9999999999999999954 44443 66788899988887643 4455566777 77999998 8899999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC-CCCCceeecC
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP-QTQPSELLPL 340 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~-~~~~~~~~~~ 340 (386)
++....... ..............|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|.... ......+..|
T Consensus 173 ~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g 247 (331)
T 3u83_A 173 RLKGEAEYQ-----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247 (331)
T ss_dssp SSCCEEEEE-----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTC
T ss_pred CCCCccccc-----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCC
Confidence 643311110 0011111122356799999999999999999999999999999999987775432 2233457788
Q ss_pred cceeeeEEecCCC----CCcccccceeeecccce--eeeee-eeecccccCC
Q psy8823 341 RNVNMAVIFAEQP----TSWEPQRKQLNCSSLLY--QCVLP-LVDRQDRLMH 385 (386)
Q Consensus 341 ~~~~~~c~~~~~p----~~W~~~~~~l~~~~~~~--~~~i~-~v~~~d~~~~ 385 (386)
+.++|.|.+.+.| ++|++++..+..+.... .|.|. +|..+|++.|
T Consensus 248 ~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y 299 (331)
T 3u83_A 248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTY 299 (331)
T ss_dssp CCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEE
T ss_pred CeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEE
Confidence 9999999997776 68999999887654433 79999 9999999765
No 84
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.95 E-value=9e-26 Score=179.36 Aligned_cols=180 Identities=22% Similarity=0.372 Sum_probs=143.1
Q ss_pred CCeeecCCCceEEEeC-CccEEEEEEeeeeCC--CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 134 PPVISDNSTRSLVVSE-GQPVQLECFAGGHPT--PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+|.+... ....+.+ |+.++|.|.+.+.+. +.+.|++++..+....... .+..|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~P~i~~~--~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 3 EPRIVTS--EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp CCEEEEC--CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred CCccccc--ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-
Confidence 4555442 2344556 999999999988876 7899999998876543322 5678999999999999999999998
Q ss_pred CCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEe--CCeeeeee-cCceeEEeeeeecCceee
Q psy8823 211 GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK--EDTQQVLT-NNQHYSISHFATADEFTD 287 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 287 (386)
+. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++ ++...... ...++.... ....
T Consensus 79 ~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~-----~~~~ 152 (190)
T 2wv3_A 79 SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-----KENY 152 (190)
T ss_dssp TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE-----CSSE
T ss_pred Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec-----CCCe
Confidence 54 677889999999998877777788999999999999999999999999 66652221 233333221 1124
Q ss_pred eEEEEeecc-cCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 288 TTIRVITIE-KRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 288 ~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 153 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 589999999 799999999999999999999998875
No 85
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.95 E-value=3.8e-27 Score=202.59 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=172.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC-----eEEEEEcCeeeC-------------CCCceE---------EeeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAIL-------------PTGGSI---------YRGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~-------------~~~~~~---------~~~~~l~i~~~ 194 (386)
+..+.+..|++++|.|.+.+.+.+ .++|+|++.... ...... ..+.+|.|.++
T Consensus 7 P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 86 (313)
T 4fqp_A 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL 86 (313)
T ss_dssp CSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcC
Confidence 345567789999999999876654 499999875321 111111 12357999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCce
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~ 273 (386)
+.+|+|.|+|.+.+......+..+.|.+..+|..........+..++.+.+.|.+. +.|.+.+.|++++.. +.....
T Consensus 87 ~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~--~~~~~~ 164 (313)
T 4fqp_A 87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG--MPNTSQ 164 (313)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC--EEEEEE
T ss_pred ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc--ccccce
Confidence 99999999999865544445677788888888877766666777888999999875 789999999999887 332221
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEEEEEEecCCCCC-CCCCceeecCcceeeeEEec
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVELFESIIPVCPP-QTQPSELLPLRNVNMAVIFA 350 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c~~~ 350 (386)
.. ..........+.|.|.++..+|+|.|+|.|.|..+.... ++.|.|..+|.... ......+..|+.++|.|.+.
T Consensus 165 ~~--~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~ 242 (313)
T 4fqp_A 165 VP--GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242 (313)
T ss_dssp EE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEE
T ss_pred ee--eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEec
Confidence 11 111122223567999999999999999999998876544 45555655554322 22334455678899999998
Q ss_pred CCC----CCcccccceeeecccce--eeeeeeeecccccCC
Q psy8823 351 EQP----TSWEPQRKQLNCSSLLY--QCVLPLVDRQDRLMH 385 (386)
Q Consensus 351 ~~p----~~W~~~~~~l~~~~~~~--~~~i~~v~~~d~~~~ 385 (386)
|+| ++|++++..+..+.... .|.|..|+.+|++.|
T Consensus 243 g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y 283 (313)
T 4fqp_A 243 SNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTL 283 (313)
T ss_dssp EESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEE
T ss_pred CCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEE
Confidence 876 58999999987654432 799999999999765
No 86
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=9.1e-27 Score=200.51 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=163.6
Q ss_pred EEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEE
Q psy8823 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA 206 (386)
Q Consensus 127 ~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 206 (386)
+...+..+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|++..+............|.|.+++.+|+|.|+|.+
T Consensus 17 ~~~~~~~~P~i~~~p~--~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 17 SHMGGQDKPFLSAWPS--AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp -------CCEEEEESC--SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred cccCCCCCCEeeccCC--CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEE
Confidence 3445556676665433 357899999999999877 6789999999875432222234668999999999999999999
Q ss_pred ecCCC----CceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 207 ENGVG----KGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 207 ~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
.+... ...+..+.|.|.. +|.+...+.. .+.+|+.++|.|.+ ..+++.+.|++++... .......
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~-~~~~~~~~w~k~g~~~--~~~~~~~---- 165 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWS-DIMFEHFFLHKEGISK--DPSRLVG---- 165 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEE-SSCCSEEEEEETTCCS--CCEEEEC----
T ss_pred EcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcC-CCCCcEEEEEECCCcc--ccceeee----
Confidence 86332 1234567777754 3445544333 37889999999999 4556789999998762 2111100
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-----eeEEEEEEEecCCCCCC--CCCceeecCcceeeeEEecCC
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-----EKTVELFESIIPVCPPQ--TQPSELLPLRNVNMAVIFAEQ 352 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p~~~~~--~~~~~~~~~~~~~~~c~~~~~ 352 (386)
..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+..|.. .+...+.+|+.++|.|.+...
T Consensus 166 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~ 245 (316)
T 3vh8_G 166 QIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSS 245 (316)
T ss_dssp EEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESSC
T ss_pred eecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCCC
Confidence 01112246789999999999999999999998752 45567777654332221 123357789999999999754
Q ss_pred C--CCcccccceeeeccc---------ceeeeeeeeecccccCC
Q psy8823 353 P--TSWEPQRKQLNCSSL---------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 353 p--~~W~~~~~~l~~~~~---------~~~~~i~~v~~~d~~~~ 385 (386)
+ +.|+++|..+..... ...|.|..|+ |++.|
T Consensus 246 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y 287 (316)
T 3vh8_G 246 YDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTY 287 (316)
T ss_dssp CSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEE
T ss_pred CcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEE
Confidence 4 689999998765322 1379999999 88765
No 87
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.95 E-value=5.9e-26 Score=181.55 Aligned_cols=181 Identities=27% Similarity=0.420 Sum_probs=144.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-e-----eeEEEECCCCCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-R-----GSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~-----~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+........ . ...|.|.+++.+|+|.|+|.+.
T Consensus 4 ~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCEEEEc-CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4444433 3557789999999999999999999999999988765432221 1 2389999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCC-----CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPK-----PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
|..+. ....+.|.|..+|.+..+. ....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++.....
T Consensus 83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~--- 156 (197)
T 2j8h_A 83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVT--- 156 (197)
T ss_dssp ETTEE-EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCE--ECSSSSCEEEEC---
T ss_pred ECCCc-eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEE--eecCCCEEEEEc---
Confidence 98776 5678888888887765433 234567799999999999999999999999987 555544443221
Q ss_pred CceeeeEEEEee-cccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 283 DEFTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 283 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 157 --~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 157 --RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp --SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 1357899999 99999999999999999999999998885
No 88
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.95 E-value=6.7e-26 Score=180.76 Aligned_cols=173 Identities=24% Similarity=0.414 Sum_probs=140.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC--ceE--E--eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--GSI--Y--RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+.... ... . ....|.|.+++.+|+|.|+|.+.|..+. ..
T Consensus 12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~ 90 (194)
T 2a38_A 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ-AT 90 (194)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EE
T ss_pred CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce-Ee
Confidence 345678999999999999999999999999998876543 111 1 2458999999999999999999998776 45
Q ss_pred eeEEEEEE---ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 216 RNIAVEVE---FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 216 ~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
..+.+.|. .+|.+...+....+..|+.+.|.|.+.|+|.+.+.|++++.. +....++..... .....|.|
T Consensus 91 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i 163 (194)
T 2a38_A 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE--IQSSLDFQISQE-----GDLYSLLI 163 (194)
T ss_dssp EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEE--CCCSSSEEEEEE-----TTEEEEEE
T ss_pred EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEE--CCCCCcEEEEEc-----CCEEEEEE
Confidence 56677776 567777677777888999999999999999999999999988 554444443221 12447999
Q ss_pred eecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 293 ITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 164 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 999999999999999999999999988877
No 89
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.95 E-value=3.2e-26 Score=182.28 Aligned_cols=175 Identities=28% Similarity=0.474 Sum_probs=144.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ..+..|.|.+++.+|+|.|+|.+.|..+......+
T Consensus 14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 93 (192)
T 2iep_A 14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93 (192)
T ss_dssp CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence 456778999999999999999999999999998876533222 13457999999999999999999998877566778
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +....++... ..+.|.|.++..+
T Consensus 94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~--------~~~~L~i~~~~~~ 163 (192)
T 2iep_A 94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSA--LRENSRIAVL--------ESGSLRIHNVQKE 163 (192)
T ss_dssp EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEE--CCCCSSEEEC--------TTSCEEESSCCGG
T ss_pred EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEE--ccCCCcEEEe--------cCCcEEEecCChh
Confidence 88999999888877777888999999999999999999999999987 5444443321 2457999999999
Q ss_pred CCeEEEEEEEcCCCcee-eEEEEEEEecC
Q psy8823 299 QYGSYICRAANKLGTSE-KTVELFESIIP 326 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p 326 (386)
|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 164 d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 164 DAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred hCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 99999999999999884 56888887544
No 90
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.95 E-value=1.1e-25 Score=199.65 Aligned_cols=233 Identities=19% Similarity=0.332 Sum_probs=170.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc--CeeeCCC-----CceEE----eeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE--NNAILPT-----GGSIY----RGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
....+.+|+.++|.|.+.|.|.+.++|+++ +..+... ..... ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 87 (389)
T 2jll_A 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87 (389)
T ss_dssp CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence 345677899999999999999999999999 7766532 22222 246899999999999999999999988
Q ss_pred CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 212 KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 212 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......++.... ......|.
T Consensus 88 ~-~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~-----~~~~~~L~ 161 (389)
T 2jll_A 88 G-HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS-----TGRKMILE 161 (389)
T ss_dssp E-EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE-----CSSCEEEE
T ss_pred C-cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec-----cCCEEEEE
Confidence 7 57889999999998877655556788999999999999999999999999873222222332221 11356899
Q ss_pred EeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEec----CCC-----CCcccccce
Q psy8823 292 VITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFA----EQP-----TSWEPQRKQ 362 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~----~~p-----~~W~~~~~~ 362 (386)
|.++..+|+|.|+|.|.|..|....++.+.+...|.+|.... ........+.+.|..+ +.| +.|.+++..
T Consensus 162 i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~-~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~ 240 (389)
T 2jll_A 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE 240 (389)
T ss_dssp ECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEE-EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCS
T ss_pred ECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceE-EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCc
Confidence 999999999999999999999999998888876665442211 1222345788888742 334 357776653
Q ss_pred ee----ecccceeeeeeeeecccc
Q psy8823 363 LN----CSSLLYQCVLPLVDRQDR 382 (386)
Q Consensus 363 l~----~~~~~~~~~i~~v~~~d~ 382 (386)
.. .......+.|..+...|.
T Consensus 241 ~~~~~~~~~~~~~~~i~~l~~~~~ 264 (389)
T 2jll_A 241 IWKIVRSHGVQTMVVLNNLEPNTT 264 (389)
T ss_dssp CCEEEECSTTCSEEEECSCCTTCE
T ss_pred ccEEeeccCCcceEEECCccCCCE
Confidence 22 222223577777766654
No 91
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.95 E-value=1.3e-25 Score=181.60 Aligned_cols=183 Identities=29% Similarity=0.494 Sum_probs=145.0
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEe-----eeEEEECCCCC-CCCeEEEEEE
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYR-----GSILKIPQITK-EDRGTYYCVA 206 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~-----~~~l~i~~~~~-~d~g~y~C~~ 206 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+...... ... ...|.|.+++. +|+|.|+|.+
T Consensus 6 pP~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 6 PPEIIRK-PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCEEEcC-CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 4555543 45567899999999999999999999999999887633222 111 25899999999 9999999999
Q ss_pred ecCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEee
Q psy8823 207 ENGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISH 278 (386)
Q Consensus 207 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~ 278 (386)
.|..+...+..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++..
T Consensus 85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~-- 160 (212)
T 2yd1_A 85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK--VDMSNPRYSL-- 160 (212)
T ss_dssp ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEE--CCTTSTTEEE--
T ss_pred EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeE--cccCCCeEEc--
Confidence 9988875677888888876 6666666667788899999999999999999999999987 433 222221
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE-EEEEEEecCCC
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT-VELFESIIPVC 328 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~ 328 (386)
..+.|.|.++..+|+|.|+|.|.|..|..... +.|.|...+..
T Consensus 161 -------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 161 -------KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204 (212)
T ss_dssp -------ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C
T ss_pred -------cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccc
Confidence 24589999999999999999999999999765 89988876543
No 92
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.95 E-value=6.1e-26 Score=194.39 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=156.8
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+....... . ....|.|.+++.+|+|.|+|.+.
T Consensus 4 ~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCEEEEC-CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCeeeec-ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4544443 346789999999999999999999999999998876543221 1 12389999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCC-----CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPK-----PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
|..+. .+..+.|.|..+|.+..+. ....+..|+.+.|.|.+.|.|.+.+.|++++.. +....++.....
T Consensus 83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~--- 156 (305)
T 2nzi_A 83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVT--- 156 (305)
T ss_dssp ETTEE-EEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSB--CCSSSSCEEEEC---
T ss_pred cCCCC-ccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEE--CCCCCcEEEEEc---
Confidence 98776 5678888888877765432 345577899999999999999999999999887 544444433211
Q ss_pred CceeeeEEEEee-cccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 283 DEFTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 283 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
.....|.|.+ +..+|.|.|+|.|.|..|..+.++.|.|...|.+|.... ........+.+.|..
T Consensus 157 --~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~-~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 157 --RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-VSDVSRDSVNLTWTE 221 (305)
T ss_dssp --SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE-EESCCSSCEEEEEEC
T ss_pred --CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce-eeeccCCEEEEEEcC
Confidence 1357899999 999999999999999999999999999998876554321 111234456666654
No 93
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.95 E-value=1.3e-25 Score=181.73 Aligned_cols=191 Identities=24% Similarity=0.452 Sum_probs=148.0
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. ...++..... ..+..+|.|
T Consensus 3 g~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-------------~~~~~~~~~~-~~~~~~L~i 68 (212)
T 2yd1_A 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-------------TQSRYTVLEQ-PGGISILRI 68 (212)
T ss_dssp --CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT-------------TSTTEEEEEE-TTTEEEEEE
T ss_pred CCCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC-------------CcceeEEEEc-CCCeEEEEE
Confidence 34688999999999999999999999999888889999998765421 1222222211 223468999
Q ss_pred cccCC-CCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 101 KDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 101 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.+++. +|+|.|+|.+.+..+...+..+.|.|..+ |.+... +....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus 69 ~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~ 147 (212)
T 2yd1_A 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN 147 (212)
T ss_dssp SSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEEC-CCCEEEETTCCEEECCEEECSSCCEEEEEET
T ss_pred EecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeC-CCceEeecCCeEEEEEEeccCCCCeEEEEEC
Confidence 99999 99999999999876665677888888765 444433 3456788999999999999999999999999
Q ss_pred CeeeCCCC-ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 173 NNAILPTG-GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 173 ~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
+..+.... ......+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 148 QTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp TEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 98886543 3344566899999999999999999999998755556788887654
No 94
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=3.3e-28 Score=218.86 Aligned_cols=273 Identities=12% Similarity=0.176 Sum_probs=171.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++...... .... ...++.+.. ...|.|.
T Consensus 119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~-----~~~~-~~~~~~~~~-------~s~L~i~ 185 (434)
T 1igy_B 119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH-----TFPA-VLQSDLYTL-------SSSVTVP 185 (434)
T ss_dssp CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE-----ECCC-EECSSCEEE-------EEEEEEE
T ss_pred CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE-----ecCc-eecCCcEEE-------EEEEEEc
Confidence 3445444433446799999999999875 555 89999987542100 0000 011122221 2379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe----------cC--CeeecCCCceEE-EeCCccEEEEEEeeeeC----C
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR----------RP--PVISDNSTRSLV-VSEGQPVQLECFAGGHP----T 164 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----------~~--p~~~~~~~~~~~-~~~g~~v~l~C~~~~~~----~ 164 (386)
+++.+| |.|+|.+.|..+.. .....+.+. .+ |.+....+.... +.+|+.++|.|.+.|.+ .
T Consensus 186 ~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~ 263 (434)
T 1igy_B 186 SSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPE 263 (434)
T ss_dssp TTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCC
T ss_pred chhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCC
Confidence 999989 99999999865542 112222111 00 222111121111 67899999999998874 3
Q ss_pred CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE--EEEecceEeeCC
Q psy8823 165 PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV--EVEFAPVITVPK 232 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~ 232 (386)
+.++|++++..+..... .....+.|.|.++..+|+|.|+|.+.|..+.. ....+.+ .+..+|.+...+
T Consensus 264 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~ 343 (434)
T 1igy_B 264 VQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIP 343 (434)
T ss_dssp CCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEEC
T ss_pred eEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEEC
Confidence 58999999877643211 11123569999999999999999999987752 2223332 445677665544
Q ss_pred CcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 233 PRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.......|+.++|.|.+.|. |++ .++|+++|.. +............+......+.|.|.....+|+|.|+|.|.|.
T Consensus 344 ~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~ 421 (434)
T 1igy_B 344 PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQA--PENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 421 (434)
T ss_dssp CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSC--CSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEET
T ss_pred CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEe--cCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcC
Confidence 44334467789999999995 433 8999999987 4322111111111112223467888888888999999999998
Q ss_pred CCc
Q psy8823 311 LGT 313 (386)
Q Consensus 311 ~g~ 313 (386)
...
T Consensus 422 ~l~ 424 (434)
T 1igy_B 422 GLH 424 (434)
T ss_dssp TSG
T ss_pred CCC
Confidence 754
No 95
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.94 E-value=5.1e-27 Score=199.49 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=168.5
Q ss_pred CCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+....+.+|+.++|.|.+.+ .+.|++++..... ......+..|.|.+++.+|+|.|+|.+.+..+. .+..+.
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~ 82 (289)
T 3ejj_X 9 PSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GSTTIH 82 (289)
T ss_dssp SCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-ECCCSSCCEEEESSCCGGGCEEEEEECCC------CEEEE
T ss_pred CCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-EeccCCccEEEEeeeccccCEEEEEEEeccCCc-ceeEEE
Confidence 3355678899999999999876 4999987643211 011123568999999999999999999987776 567788
Q ss_pred EEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCe-eEEEe-CCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 220 VEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIK-EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 220 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++.. +....++... ....|.|.++.
T Consensus 83 l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~~--------~~~~L~i~~v~ 152 (289)
T 3ejj_X 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ--VLRKTVYFFS--------PWRGFIIRKAK 152 (289)
T ss_dssp EEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEE--CCTTCCEEEE--------TTTEEEESSCC
T ss_pred EEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCee--cCCCccEEEC--------CCCCEEEeecc
Confidence 88887776 45556677788999999999999877764 99986 4444 3333333322 24569999999
Q ss_pred cCCCeEEEEEEE-cCCCceeeEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecC-CC---CCcccccceeeecc
Q psy8823 297 KRQYGSYICRAA-NKLGTSEKTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAE-QP---TSWEPQRKQLNCSS 367 (386)
Q Consensus 297 ~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~-~p---~~W~~~~~~l~~~~ 367 (386)
.+|+|.|+|.|. |..+..+..+.|.|...+..++ .+....+..|+.++|.|.+.+ .| ++|++++..+..+.
T Consensus 153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~ 232 (289)
T 3ejj_X 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232 (289)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred cccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence 999999999999 5566777788888875433232 223344568999999999987 45 68999999886543
Q ss_pred c----------ceeeeeeeeecccccCC
Q psy8823 368 L----------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 368 ~----------~~~~~i~~v~~~d~~~~ 385 (386)
. ...|.|..|+.+|++.|
T Consensus 233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 260 (289)
T 3ejj_X 233 NSDFQDNYYKKVRALSLNAVDFQDAGIY 260 (289)
T ss_dssp EEEECSSSEEEEEEEEESSCCSSSCEEE
T ss_pred CcccccceEEeeEEEEEEeecccCCEEE
Confidence 2 22799999999998765
No 96
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.94 E-value=5.1e-25 Score=178.16 Aligned_cols=186 Identities=23% Similarity=0.373 Sum_probs=140.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCC-CCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQI-TKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+........ .+..|.|.++ +.+|+|.|+|.+.
T Consensus 6 ~P~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~ 84 (212)
T 2yd6_A 6 PPRFTRT-PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84 (212)
T ss_dssp EEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred CCeEEeC-cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence 4444433 3456788999999999999999999999999988765443322 2457999999 5999999999999
Q ss_pred cCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeee
Q psy8823 208 NGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHF 279 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~ 279 (386)
|..+. ....+.|.|... |.+...+....+..|+.+.|.|.+.|+|.+.+.|++++..+.... ..++....
T Consensus 85 n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~- 162 (212)
T 2yd6_A 85 NNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR- 162 (212)
T ss_dssp ETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE-
T ss_pred cCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe-
Confidence 98876 566788888765 556666666677889999999999999999999999998732221 12222111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecC
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIP 326 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p 326 (386)
......|.|.++..+|+|.|+|.|.|..|.... .+.|.+...|
T Consensus 163 ----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 163 ----SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp ----ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ----cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 013578999999999999999999999998764 5666665443
No 97
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=177.50 Aligned_cols=183 Identities=20% Similarity=0.353 Sum_probs=142.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcc-----eEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS-----TYT 97 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 97 (386)
+|.|...|....+.+|++++|.|.+. +.+.+.+.|++++..+... ...++......... +.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~ 69 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELA------------DSTQTQVPLGEDEQDDWIVVSQ 69 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSC------------EEEEEEEECSSSTTSEEEEEEE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccC------------CCCceEEEEccccccceeeccE
Confidence 57788889999999999999999999 8888899999988654211 00122222221111 468
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeee
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAI 176 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~ 176 (386)
|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 70 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 148 (195)
T 2c5d_C 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE-PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148 (195)
T ss_dssp EEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC-CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred EEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC-CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence 9999999999999999999876555556688999988877654 344678899999999999999999 99999999887
Q ss_pred CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 177 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...... .....|.|.+++ |+|.|+|.+.|..|...+..+.|.|
T Consensus 149 ~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 149 ATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp SSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 654432 456679999987 7899999999998874456777777
No 98
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.94 E-value=3.7e-25 Score=176.84 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=144.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+... +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 85 (197)
T 3lcy_A 7 APGIRKE-MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE 85 (197)
T ss_dssp EEEEEEC-CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECS
T ss_pred CCccccc-CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECC
Confidence 3444333 34667899999999999999999999999999988665543332 237999999999999999999988
Q ss_pred CCCceeeeEEEEEEecceEeeC---CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 210 VGKGTRRNIAVEVEFAPVITVP---KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
.+. ....+.+.|..+|.+... .....+..|+.+.|.|.+.|+|.|.+.|++++.. +....++..... ..
T Consensus 86 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~--~~~~~~~~~~~~-----~~ 157 (197)
T 3lcy_A 86 VGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL--LQNSENITIENT-----EH 157 (197)
T ss_dssp SCE-EEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEC-----SS
T ss_pred CCc-eeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEE--CCCCCceEEEEc-----CC
Confidence 776 566778888887766532 2334567899999999999999999999999988 555544443221 13
Q ss_pred eeEEEEeeccc-CCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 287 DTTIRVITIEK-RQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 287 ~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
...|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 158 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 47899999985 899999999999999999999998864
No 99
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=177.71 Aligned_cols=167 Identities=19% Similarity=0.317 Sum_probs=139.1
Q ss_pred CceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCc--eEEe-----------eeEEEECCCCCCCCeEEEEEEe
Q psy8823 142 TRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGG--SIYR-----------GSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~-----------~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+....+.+|+.++|.|.+. +.|.+.+.|++++..+..... .... ...|.|.+++.+|+|.|+|.+.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 88 (195)
T 2c5d_C 9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88 (195)
T ss_dssp CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence 4567889999999999998 999999999999988765532 1111 4689999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++.. +...... ..
T Consensus 89 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~--~~~~~~~----------~~ 156 (195)
T 2c5d_C 89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP--LATAPGH----------GP 156 (195)
T ss_dssp ETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCB--SSSSTTS----------SC
T ss_pred eCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEe--ccCCCCc----------CC
Confidence 987765556689999999988887777888899999999999999999 9999999987 4332221 24
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFE 322 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 322 (386)
...|.|.+++ |+|.|+|.|.|..|... .++.|.|
T Consensus 157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 6789999987 78999999999999986 7888888
No 100
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.94 E-value=2.8e-25 Score=179.71 Aligned_cols=190 Identities=22% Similarity=0.350 Sum_probs=142.0
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .+.............|.|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~---------------~~~~~~~~~~~~~~~L~i~ 68 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN---------------QRFEVIEFDDGSGSVLRIQ 68 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC---------------TTEEEEEEGGGTEEEEEEC
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC---------------CceeEEEEcCCCceEEEEe
Confidence 4578899989999999999999999999888899999998865421 1111111111234589999
Q ss_pred cc-CCCCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC
Q psy8823 102 DI-QETDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN 173 (386)
Q Consensus 102 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~ 173 (386)
++ +.+|+|.|+|.+.+..+. .+..+.|.|... |.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++
T Consensus 69 ~v~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g 146 (212)
T 2yd6_A 69 PLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMG-PQLKVVERTRTATMLCAASGNPDPEITWFKDF 146 (212)
T ss_dssp SCCTTTTCEEEEEEEEETTEE-EEEEEEEEEECGGGCCTTCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETT
T ss_pred ccCCCCCCeEEEEEEEcCCCc-EEEEEEEEEeccCccCCCcceeecC-CcceeEecCCCEEEEEEecCCCCCeEEEEECC
Confidence 99 599999999999976543 466777888654 333332 34457889999999999999999999999999
Q ss_pred eeeCCCC---ceE-E---eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 174 NAILPTG---GSI-Y---RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 174 ~~~~~~~---~~~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
..+.... ... . ....|.|.+++.+|+|.|+|.+.|..|...+....+.|..+|..
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~ 208 (212)
T 2yd6_A 147 LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208 (212)
T ss_dssp EEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred ccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence 8876542 111 1 14789999999999999999999999987777888888776653
No 101
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.94 E-value=5.8e-27 Score=203.82 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=174.7
Q ss_pred CceEEEeCCccEEEEEEee-------eeCCCeEEEEEcCeee--CCC--CceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAG-------GHPTPRISWRRENNAI--LPT--GGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+.+|+.+.|.|.+. +.|.+.+.|++++..+ ... ......+..|.|.+++.+|+|.|+|.+.|..
T Consensus 25 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~ 104 (339)
T 3o4o_C 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS 104 (339)
T ss_dssp SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETT
T ss_pred ceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCc
Confidence 4567889999999999997 8888999999999874 222 1233456789999999999999999999987
Q ss_pred CCceeeeEEEEEEecceEe--eCCCcccccCCCcEEEEEE-----EEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeec
Q psy8823 211 GKGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECH-----VEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATA 282 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~ 282 (386)
+. ....+.|.|..+|... .......+.+|+.+.|.|. +.|.|.+.+.|++++.. +... .++...
T Consensus 105 g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~--~~~~~~~~~~~----- 176 (339)
T 3o4o_C 105 YC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLL--LDKDNEKFLSV----- 176 (339)
T ss_dssp EE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCB--CCTTCSSEEEC-----
T ss_pred ce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCee--CCCCCceeEEc-----
Confidence 75 5677788887765422 1122235678999999999 78899999999999887 4332 222221
Q ss_pred CceeeeEEEEeecccCCCeEEEEEEEcCCC----ceeeEEEEEEEecCC-----CCCCCCCceeecCcceeeeEEe---c
Q psy8823 283 DEFTDTTIRVITIEKRQYGSYICRAANKLG----TSEKTVELFESIIPV-----CPPQTQPSELLPLRNVNMAVIF---A 350 (386)
Q Consensus 283 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~~~~~~c~~---~ 350 (386)
.....|.|.++..+|+|.|+|.|.|..| ....++.|.|...+. .........+..|+.++|.|.+ .
T Consensus 177 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~ 254 (339)
T 3o4o_C 177 --RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT 254 (339)
T ss_dssp --TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS
T ss_pred --CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC
Confidence 1235899999999999999999999988 456677887775432 1112334467789999999999 8
Q ss_pred CCC----CCcccccceeeec---------ccc-----e------eeeeeeeecccc-cCC
Q psy8823 351 EQP----TSWEPQRKQLNCS---------SLL-----Y------QCVLPLVDRQDR-LMH 385 (386)
Q Consensus 351 ~~p----~~W~~~~~~l~~~---------~~~-----~------~~~i~~v~~~d~-~~~ 385 (386)
+.| +.|++|+..+..+ .++ . .|.|..|+.+|+ +.|
T Consensus 255 g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y 314 (339)
T 3o4o_C 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDF 314 (339)
T ss_dssp SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCC
T ss_pred CCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccE
Confidence 877 6899999875422 111 0 599999999997 755
No 102
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=197.54 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=167.6
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCC-----------------CceE-----EeeeEEEECCCCCCCCe
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPT-----------------GGSI-----YRGSILKIPQITKEDRG 200 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~-----------------~~~~-----~~~~~l~i~~~~~~d~g 200 (386)
.+.+.+|++++|.|.+.+. +.+.++|+|++...... .+.. ....+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 4568899999999998644 44579999975432100 0011 12357999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEEecceEe--eCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEe
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS 277 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~ 277 (386)
.|+|.+.+......+....+.+...|... ..+.......|+.+.|.|.+ .|.|.+.+.|++++.. +.....
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~--~~~~~~---- 161 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGE--MESTTT---- 161 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSB--CCEEEE----
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcc--cccccc----
Confidence 99999988655445666777777666543 34445556678899999985 6899999999999877 322111
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEEecCCCCCCC-CCceeecCcceeeeEEecCCC-
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFESIIPVCPPQT-QPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p~~~~~~-~~~~~~~~~~~~~~c~~~~~p- 353 (386)
..........+.|.|.++..+|+|.|+|.|.|..|... .++.|.|...|...... ....+..++.++|.|.+.|.|
T Consensus 162 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~ 241 (308)
T 4fom_A 162 SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP 241 (308)
T ss_dssp ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence 11112223456799999999999999999999987654 45566666666543333 334455677899999998876
Q ss_pred ---CCcccccceeeecccce---eeeeeeeecccccCC
Q psy8823 354 ---TSWEPQRKQLNCSSLLY---QCVLPLVDRQDRLMH 385 (386)
Q Consensus 354 ---~~W~~~~~~l~~~~~~~---~~~i~~v~~~d~~~~ 385 (386)
+.|++++..+..+.... .+.|..|+.+|++.|
T Consensus 242 p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 279 (308)
T 4fom_A 242 PFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVY 279 (308)
T ss_dssp EEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEE
T ss_pred CcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEE
Confidence 57999999887654432 577899999999865
No 103
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.94 E-value=4e-25 Score=176.66 Aligned_cols=185 Identities=18% Similarity=0.313 Sum_probs=143.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.. .+.++.... ...+..+|.|.+
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-~~~~~~~L~i~~ 68 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-------------DGLKYRIQE-FKGGYHQLIIAS 68 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCC-------------CSSSEEEEE-ETTTEEEEEECS
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECcc-------------CCCcEEEEE-cCCCEEEEEECc
Confidence 578898888889999999999999999888889999998765421 112222211 123456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC----CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN----STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+ ..+..+.|.|..+|..... .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 ~~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (197)
T 2j8h_A 69 VTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (197)
T ss_dssp CCGGGCSEEEEEEEETTE-EEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred CCHHhCEEEEEEEEECCC-ceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence 999999999999997644 3467778888776654322 12456788999999999999999999999999988865
Q ss_pred CCceEE----eeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 179 TGGSIY----RGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~----~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
...... ....|.|.+ +..+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 148 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 196 (197)
T 2j8h_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA 196 (197)
T ss_dssp SSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence 544332 246899999 9999999999999999887 5667777664
No 104
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.94 E-value=5e-25 Score=173.78 Aligned_cols=165 Identities=25% Similarity=0.453 Sum_probs=138.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.+..+...+
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 88 (182)
T 1rhf_A 9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS 88 (182)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence 45677899999999999999889999999999887655433221 368999999999999999999998776566
Q ss_pred eeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEee
Q psy8823 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294 (386)
Q Consensus 216 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 294 (386)
..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.| .+.|++++.. +..... ....|.|.+
T Consensus 89 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~--~~~~~~------------~~~~L~i~~ 154 (182)
T 1rhf_A 89 QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK--IGGPAP------------SPSVLNVTG 154 (182)
T ss_dssp CCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEE--CSCSEE------------SSEEEEECC
T ss_pred EEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeE--CCCCCC------------CceEEEEec
Confidence 7889999999998887777888999999999999999999 9999999987 332211 467789988
Q ss_pred cccCCCeEEEEEEEcCCCceee-EEEEEE
Q psy8823 295 IEKRQYGSYICRAANKLGTSEK-TVELFE 322 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 322 (386)
+ +|+|.|+|.|.|..|.... ++.|.|
T Consensus 155 ~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 155 V--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp C--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred c--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 8 5899999999999998864 777766
No 105
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.94 E-value=2.4e-25 Score=177.17 Aligned_cols=182 Identities=24% Similarity=0.412 Sum_probs=140.5
Q ss_pred CCeeecC-CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 134 PPVISDN-STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 134 ~p~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+|.+... .+....+.+|+.++|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.+..
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 81 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEccc
Confidence 3444433 23356778899999999999999999999999988876544433 24579999999999999999999987
Q ss_pred CCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-----ceeEEeeeeecCce
Q psy8823 211 GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-----QHYSISHFATADEF 285 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 285 (386)
+. ....+.|.|..+|.+.... ...+..|+.+.|.|.+.|+|.+.+.|++++....+... .++.... ..
T Consensus 82 ~~-~~~~~~l~V~~~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 154 (192)
T 2va4_A 82 GE-DEKQAFLQVFVQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG-----QH 154 (192)
T ss_dssp EE-EEEEEEEEEEEEEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEE-----ET
T ss_pred cc-cceEEEEEEEccCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEee-----cc
Confidence 76 4567788888888776543 34556799999999999999999999998433224332 1222111 11
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 155 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 3578999999999999999999999999999998877
No 106
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.94 E-value=5.1e-25 Score=174.82 Aligned_cols=172 Identities=19% Similarity=0.376 Sum_probs=136.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEE-cCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRR-ENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+....+.+|+.++|.|.+.+.|. .+.|++ ++..+......... ...|.|.+++.+|+|.|+|.+.+..+...+.
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 87 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 87 (189)
T ss_dssp CSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE
T ss_pred CCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCCcEEE
Confidence 45567889999999999988877 999999 66665544433322 2489999999999999999999988875677
Q ss_pred eEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 217 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+......++... ..+.|.|.++.
T Consensus 88 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~ 159 (189)
T 2v44_A 88 TVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--------ANNNLQILNIN 159 (189)
T ss_dssp EEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEEC--------TTSCEEETTCC
T ss_pred EEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEe--------cCCcEEEEEcC
Confidence 8899999999887766667788999999999999999999999999987443333343322 24589999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.+|+|.|+|.|.|..|.......+.|
T Consensus 160 ~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 160 KSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp GGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred cccCeEEEEEEEccccCceeeeeEEE
Confidence 99999999999999987765544444
No 107
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.94 E-value=1.7e-25 Score=176.41 Aligned_cols=179 Identities=26% Similarity=0.370 Sum_probs=136.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+... .+.....+......+|.|.++
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~--------------~~~~~~~~~~~~~~~L~i~~~ 67 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL--------------DQLYIPVSEQHWIGFLSLKSV 67 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS--------------EEEEEEEETTEEEEEEEESSC
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC--------------CceEEEecCCCceEEEEEeec
Confidence 456777788888999999999999998888899999987654211 112222222233568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCce
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGS 182 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~ 182 (386)
+.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.....
T Consensus 68 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~- 145 (182)
T 1rhf_A 68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP- 145 (182)
T ss_dssp CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-
T ss_pred CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-
Confidence 9999999999998765555677889999988877654 344678899999999999999998 9999999988754322
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....|.|.++ +|+|.|+|.+.|..|...+..+.|.|
T Consensus 146 --~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 146 --SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp --SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred --CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 5667999988 58999999999998875455677665
No 108
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.94 E-value=2.6e-27 Score=203.89 Aligned_cols=232 Identities=18% Similarity=0.240 Sum_probs=166.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCC----CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILP----TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
..+.+.+|+.+.|.|.+.+.+ .+.+.|++++..... .......+..|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCC-CCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceE-EEEE
Confidence 356788999999999998877 789999999865321 2233344668999999999999999999998765 3333
Q ss_pred EEEEEE-ecceEeeCC---CcccccCCCcEEEEEEE------EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceee
Q psy8823 218 IAVEVE-FAPVITVPK---PRLGQALQYDMDLECHV------EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287 (386)
Q Consensus 218 ~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (386)
+.+.+. .+|.+...+ ....+..|+.+.|.|.+ .|.|.+.+.|++++..+... ..++. ...
T Consensus 92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~-~~~~~---------~~~ 161 (315)
T 1itb_B 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFS---------GVK 161 (315)
T ss_dssp CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC-SSSEE---------EET
T ss_pred EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc-cceEe---------ecC
Confidence 333332 233332211 12356789999999998 88999999999999883221 11111 135
Q ss_pred eEEEEeecccCCCeEEEEEEE-cCCCce---eeEEEEEEEecC-CCCCC---CCC--ceeecCcceeeeEEecCCC---C
Q psy8823 288 TTIRVITIEKRQYGSYICRAA-NKLGTS---EKTVELFESIIP-VCPPQ---TQP--SELLPLRNVNMAVIFAEQP---T 354 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~p-~~~~~---~~~--~~~~~~~~~~~~c~~~~~p---~ 354 (386)
..|.|.++..+|+|.|+|.|. |..|.. ...+.+.+.... ..+|. ... ..+..|+.++|.|.+.|.| +
T Consensus 162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 589999999999999999999 788877 344444443211 11121 111 3577899999999999887 6
Q ss_pred Ccccccceeeeccc--------------------ceeeeeeeeeccc-ccCC
Q psy8823 355 SWEPQRKQLNCSSL--------------------LYQCVLPLVDRQD-RLMH 385 (386)
Q Consensus 355 ~W~~~~~~l~~~~~--------------------~~~~~i~~v~~~d-~~~~ 385 (386)
.|++||..+..+.. ...|.|..|+.+| ++.|
T Consensus 242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y 293 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF 293 (315)
T ss_dssp EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCE
T ss_pred EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCce
Confidence 99999999887542 1269999999999 8765
No 109
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.94 E-value=4.3e-26 Score=184.52 Aligned_cols=203 Identities=21% Similarity=0.323 Sum_probs=143.6
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+....... ..... ...+.......|.
T Consensus 5 ~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~l~ 75 (212)
T 2v9r_A 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSHRM--------LLPSGSLFFLRIV 75 (212)
T ss_dssp -CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCT-TCSEE--------ECTTSCEEESSCC
T ss_pred cccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccccc-ccceE--------EecCCcEEEEEEE
Confidence 34567889988889899999999999999988888999999886553211000 00000 0011111111456
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP 178 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~ 178 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|...+......+....+.+|+.++|.|.+ .+.|.+.+.|++++..+..
T Consensus 76 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~ 155 (212)
T 2v9r_A 76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD 155 (212)
T ss_dssp CCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred ecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence 677899999999999998765544556677776543323333455678899999999998 8999999999999998875
Q ss_pred CCc-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeC
Q psy8823 179 TGG-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231 (386)
Q Consensus 179 ~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~ 231 (386)
... ....+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...
T Consensus 156 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~ 209 (212)
T 2v9r_A 156 KDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209 (212)
T ss_dssp TSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred CcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence 443 33456789999999999999999999998875555689999988876643
No 110
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.94 E-value=1.2e-25 Score=178.88 Aligned_cols=187 Identities=24% Similarity=0.430 Sum_probs=146.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. .+.++....+ ...|.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~-------------~~~~~~~~~~----~~~L~i~ 67 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL-------------FDTRYSIREN----GQLLTIL 67 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCT-------------TCTTEEEEGG----GTEEEES
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccc-------------cCccEEEcCC----ccEEEEc
Confidence 4567787777778899999999999999888889999998765421 1223333221 1279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (192)
T 2iep_A 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146 (192)
T ss_dssp SCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC-CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS
T ss_pred CCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC-CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc
Confidence 999999999999999876665566777888877776654 3456788999999999999999999999999988765544
Q ss_pred eEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 182 SIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
... ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.++|
T Consensus 147 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 322 355799999999999999999999988765677888888765
No 111
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.94 E-value=5.5e-26 Score=181.30 Aligned_cols=167 Identities=15% Similarity=0.192 Sum_probs=123.5
Q ss_pred EEEeCCccEEEEEE---eeeeCCCeEEEEEcCeeeCCC-----------------Cce----EEeeeEEEECCCCCCCCe
Q psy8823 145 LVVSEGQPVQLECF---AGGHPTPRISWRRENNAILPT-----------------GGS----IYRGSILKIPQITKEDRG 200 (386)
Q Consensus 145 ~~~~~g~~v~l~C~---~~~~~~~~v~W~~~~~~~~~~-----------------~~~----~~~~~~l~i~~~~~~d~g 200 (386)
+++..|+.++|.|. +.+.|.+.++|+|++...... ... ......|.|.+++.+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 56889999999995 567788999999987432110 000 012457999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec--CceeEEee
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN--NQHYSISH 278 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~~~~~~~~ 278 (386)
.|+|.+.|..+. ....+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++....... ..++...
T Consensus 83 ~Y~C~a~n~~g~-~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~- 160 (203)
T 4fa8_A 83 NYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE- 160 (203)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC-
T ss_pred EEEEEEEcCCCc-EEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe-
Confidence 999999998876 567788999888888877777888999999999999999999999998776522211 2222211
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
.......|.+.++..+|+|.|+|.|.|..|+++..
T Consensus 161 ----~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 161 ----KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp ----TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred ----CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 11123455677999999999999999999998763
No 112
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.94 E-value=5.1e-25 Score=175.13 Aligned_cols=173 Identities=18% Similarity=0.315 Sum_probs=138.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CCeEEEEE-cCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TPRISWRR-ENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+....... . ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 88 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence 3456788999999999998876 78999999 777776433221 1 24689999999999999999999987655
Q ss_pred eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 214 TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 214 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|++++..+......++... .++.|.|.
T Consensus 89 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~ 160 (191)
T 1epf_A 89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR 160 (191)
T ss_dssp EEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--------TTSCEEET
T ss_pred eEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--------cCCeEEEC
Confidence 6778889999999888877778889999999999999999999999999987333233333221 24479999
Q ss_pred ecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
++..+|+|.|+|.|.|..|.......+.|
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999999999976666555554
No 113
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.8e-25 Score=175.00 Aligned_cols=173 Identities=26% Similarity=0.477 Sum_probs=134.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~ 217 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+..... ....+..|.|.+++.+|+|.|+|.+.+..+. .....
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 88 (189)
T 2v5t_A 9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88 (189)
T ss_dssp CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence 3456789999999999999989999999999887653221 1123567999999999999999999987643 23456
Q ss_pred EEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec
Q psy8823 218 IAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 295 (386)
+.+.+..+|.+..... ...+..|+.+.|.|.+.|.|.+.+.|++++.. +.....+... .....|.|.++
T Consensus 89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~i~~~ 159 (189)
T 2v5t_A 89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL--IEENEKYILK-------GSNTELTVRNI 159 (189)
T ss_dssp EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEE--CCCSSSEEEE-------TTTTEEEECSC
T ss_pred EEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEE--CcCCCcEEEe-------cCCCEEEEcCC
Confidence 7788888887766544 35677899999999999999999999999987 5444444322 12467999999
Q ss_pred ccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 296 EKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 296 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
..+|+|.|+|.|.|..|....++.|.|.
T Consensus 160 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 160 INSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 9999999999999999999999988875
No 114
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.94 E-value=6.9e-25 Score=174.85 Aligned_cols=184 Identities=22% Similarity=0.312 Sum_probs=139.6
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++..+.... ..++.... ..+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~------------~~~~~~~~--~~~~~~L~i~ 68 (194)
T 2a38_A 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST------------LPGVQISF--SDGRAKLTIP 68 (194)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTT------------STTCEEEE--ETTEEEEEES
T ss_pred CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEccccc------------CCceEEEe--CCCEEEEEEC
Confidence 346888888888899999999999999988888999999887652211 01111111 1345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|.. +|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 ~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~ 146 (194)
T 2a38_A 69 AVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQR-LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146 (194)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEEEEEC-CCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred CCCcccCEEEEEEEEcCCce-EeEEEEEEEccCCCCCEEEeC-CccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCC
Confidence 99999999999999876443 45566777763 4444433 3456788999999999999999999999999998865
Q ss_pred CCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 179 TGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 179 ~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....... ...|.|.++..+|+|.|+|.+.|..+. ....+.|.|
T Consensus 147 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V 193 (194)
T 2a38_A 147 SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193 (194)
T ss_dssp SSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred CCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEE
Confidence 5443322 237999999999999999999999887 555666655
No 115
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=171.36 Aligned_cols=186 Identities=16% Similarity=0.314 Sum_probs=143.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+. ...++.... .....+|.|
T Consensus 4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~--~~~~~~L~i 67 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI--------------QSRKYKMSS--DGRTHTLTV 67 (197)
T ss_dssp CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEEC--------------CCSSEEEEE--SSSEEEEEE
T ss_pred cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECC--------------CCccEEEEe--CCCEEEEEE
Confidence 3457888888888999999999999999888888999999875431 122232222 223558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC--CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN--STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+ .....+.|.|..+|..... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 68 ~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~ 146 (197)
T 3lcy_A 68 MTEEQEDEGVYTCIATNEVG-EVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN 146 (197)
T ss_dssp ECCSGGGCEEEEEEEECSSC-EEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred ecCCccCCEEEEEEEECCCC-ceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCC
Confidence 99999999999999986543 3456677777766655432 23556788999999999999999999999999988866
Q ss_pred CCceEEe----eeEEEECCCCC-CCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 179 TGGSIYR----GSILKIPQITK-EDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 179 ~~~~~~~----~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
....... ...|.|.++.. +|+|.|+|.+.|..+. ....+.|.|..
T Consensus 147 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 196 (197)
T 3lcy_A 147 SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEIQD 196 (197)
T ss_dssp CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCE-EEEEEEEEEEC
T ss_pred CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCc-eEEEEEEEEec
Confidence 5544332 26799999995 8999999999999887 56677777653
No 116
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.93 E-value=1.1e-23 Score=167.34 Aligned_cols=175 Identities=24% Similarity=0.351 Sum_probs=132.9
Q ss_pred cCCeeeeeccceeeec-CCcEEEEEEEeeCCC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIKDI-GGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~-G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+|.|... ....+.+ |+++.|.|.+.+.+. +.+.|++++..+... +.. ..+..|.
T Consensus 2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~---------------~~~------~~~~~L~ 59 (190)
T 2wv3_A 2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---------------RKN------ASNMEYR 59 (190)
T ss_dssp -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTC---------------CBC------CSEEEEE
T ss_pred CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECccc---------------ceE------eccEEEE
Confidence 46777764 4455556 999999999998776 789999987654211 100 1345899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE--cCeeeC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR--ENNAIL 177 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~ 177 (386)
|.+++.+|+|.|+|.+.+. +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.
T Consensus 60 i~~~~~~d~G~Y~C~~~n~--~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~ 136 (190)
T 2wv3_A 60 INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE 136 (190)
T ss_dssp ESSCCGGGCEEEEEEEEET--TEEEEEEEEEEECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred EecCCcccCEEEEEEEEeC--CcccccEEEEEecCCccccc-CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence 9999999999999999987 55677888999988877654 345678899999999999999999999999 665543
Q ss_pred C---CCceEEe----eeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 178 P---TGGSIYR----GSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 178 ~---~~~~~~~----~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
. ....... ...|.|.++. .+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 189 (190)
T 2wv3_A 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVLRVR 189 (190)
T ss_dssp CCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred eecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence 1 2222221 2479999999 79999999999999887 5566666664
No 117
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.93 E-value=9.4e-25 Score=179.09 Aligned_cols=187 Identities=19% Similarity=0.370 Sum_probs=139.5
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~ 105 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT 105 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCc-cccc
Confidence 5667899999999999999999999999999887544321 122457999999999999999999998776 4567
Q ss_pred EEEEEEecc----eEee-CCCcccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCceeEEeeeeecCceeee
Q psy8823 218 IAVEVEFAP----VITV-PKPRLGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 218 ~~l~v~~~p----~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
+.+.|...+ .+.. .+....+..|+.+.|.|.+.++|.+.+.|++ ++..+.....................+
T Consensus 106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
T 3ojm_B 106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185 (231)
T ss_dssp EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence 777776532 2222 2345667889999999999999999999999 666522122112222111122223456
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|.+|.
T Consensus 186 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~ 227 (231)
T 3ojm_B 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG 227 (231)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred EEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence 799999999999999999999999999999999998887554
No 118
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.93 E-value=1.5e-24 Score=172.49 Aligned_cols=174 Identities=18% Similarity=0.342 Sum_probs=135.4
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
++.+.+.|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ...++..... .....+|.|.
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i~ 67 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------------NQQRISVVWN-DDDSSTLTIY 67 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-------------BSSSEEEEEE-ETTEEEEEEC
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-------------CCCeEEEEEC-CCCceEEEEc
Confidence 56788889999999999999999998765 78899999 5543311 1222222211 1345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (191)
T 1epf_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (191)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred cCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCC-CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC
Confidence 9999999999999998766667788889998888776543 445788999999999999999999999999988754322
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (191)
T 1epf_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180 (191)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred ceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence 1123457999999999999999999997743
No 119
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=171.36 Aligned_cols=182 Identities=26% Similarity=0.434 Sum_probs=136.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+.+..+.+|++++|.|.+.+.+.+.+.|++++..+.. ..+.++....+ .+|.|.++
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~~ 64 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNI 64 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CB------------CCCTTEEECTT-----SCEEETTC
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcccee------------ccCCeEEEecC-----CCEEEeeC
Confidence 57788888889999999999999999888889999998865421 11233333222 26999999
Q ss_pred CCCCCeEEEEEeEEcccc-eeeeEEEEEEecCCeeecCCCc-eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 104 QETDAGYYRCQVIIGINN-KISAEVDLQVRRPPVISDNSTR-SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+.+|+|.|+|.+.+.... .....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 65 ~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~ 144 (189)
T 2v5t_A 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 144 (189)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSS
T ss_pred CHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCc
Confidence 999999999999987543 3345677777777766544332 45667899999999999999999999999988765544
Q ss_pred eEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 182 SIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 182 ~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
... .+..|.|.++..+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 145 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 187 (189)
T 2v5t_A 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 187 (189)
T ss_dssp EEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred EEEecCCCEEEEcCCChhhCeeEEEEEEeCCCc-eeEEEEEEEE
Confidence 333 2467999999999999999999999887 4556666653
No 120
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.93 E-value=4.8e-25 Score=183.59 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=120.9
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--ee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NA 175 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~ 175 (386)
++.+|+|.|+|.+. +.....+.+.+..++.+.. .+..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..
T Consensus 11 v~~~dsg~Y~C~a~----g~~~~~~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~ 85 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS----GYSFTNYWMNWLRELVMTQ-SPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS 85 (254)
T ss_dssp -------------------------------CCCEEE-ECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred ecCCccEEEEEcCc----hhhhhhhhhheeeceeEEe-CCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence 68899999999987 2222233333333444433 24567899999999999998877 3789999854 21
Q ss_pred e----------CC--CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCccc
Q psy8823 176 I----------LP--TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLG 236 (386)
Q Consensus 176 ~----------~~--~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~ 236 (386)
+ .. ..+... ....|.|.+++.+|+|.|+|.+.|..+........+.|.. +|.+........
T Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~ 165 (254)
T 2c1o_A 86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE 165 (254)
T ss_dssp CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence 1 00 011111 2347999999999999999999987654333334566643 566665444444
Q ss_pred ccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCce--eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH--YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...|+.++|.|.+.|. |+ +.+.|++++.. +..... .......+......+.|.|.++..+|+|.|+|.|.|...
T Consensus 166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEESSSE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred hccCCcEEEEEEEecccCCCcEEEEEECCCc--ccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 4567899999999884 44 36999999987 444311 111111111122467899999999999999999999987
Q ss_pred ceee
Q psy8823 313 TSEK 316 (386)
Q Consensus 313 ~~~~ 316 (386)
....
T Consensus 244 ~~~~ 247 (254)
T 2c1o_A 244 TSPI 247 (254)
T ss_dssp SSCE
T ss_pred CCcc
Confidence 6533
No 121
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.93 E-value=3.6e-24 Score=169.90 Aligned_cols=179 Identities=19% Similarity=0.336 Sum_probs=134.0
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.+...+.+..+.+|++++|.|.+.+.|. .+.|++ ++..+. ...++....+ ....+|.|.+++
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~--------------~~~~~~~~~~--~~~~~L~i~~~~ 66 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKII--------------STQRVVVQKE--GVRSRLTIYNAN 66 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCC--------------CCSSEEEEEE--TTEEEEEECSCC
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccC--------------CCceEEEECC--CCeEEEEEccCC
Confidence 4667778888999999999999998776 899999 443321 1222222221 234589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC--CCce
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--TGGS 182 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~ 182 (386)
.+|+|.|+|.+.+..+...+..+.|.|..+|.+.... ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ....
T Consensus 67 ~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~ 145 (189)
T 2v44_A 67 IEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF 145 (189)
T ss_dssp GGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESCC-CSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTE
T ss_pred cccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeecC-CcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCE
Confidence 9999999999998766656778889998888776543 346788999999999999999999999999987642 1121
Q ss_pred -EEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEE
Q psy8823 183 -IYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEV 222 (386)
Q Consensus 183 -~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v 222 (386)
...+..|.|.+++.+|+|.|+|.+.|..+.. ....+.+.|
T Consensus 146 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~V 187 (189)
T 2v44_A 146 AMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187 (189)
T ss_dssp EECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEE
Confidence 2235589999999999999999999987552 334444444
No 122
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=173.21 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=127.2
Q ss_pred eEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 144 SLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
...+.+|+.+.|.|.+. +.|.+.++|++++..+......... ...|.|.+++.+|+|.|+|.+.| +. ...
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~-a~~ 87 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GK-ATN 87 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TT-EEE
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CC-eEE
Confidence 46788999999999995 4799999999999998765543321 23699999999999999999999 33 222
Q ss_pred eEEEEEE---------------------ecceEeeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCcee
Q psy8823 217 NIAVEVE---------------------FAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 217 ~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
...+.+. .+|.+.... ...+.+|+.+.|.|.+.|. |.|.+.|++++.. +....++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~--l~~~~~~ 164 (207)
T 3rbs_A 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE--ISVDEKH 164 (207)
T ss_dssp EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE--ECCCCCC
T ss_pred EEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE--CCCCCce
Confidence 2232211 145554433 3567889999999999999 8999999999988 5443332
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
. .......|.|.++..+|+|.|+|.|.|..|..+.++.|..
T Consensus 165 ~-------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 165 D-------FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp C-------CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred E-------cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 1 1123567999999999999999999999999999988754
No 123
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.6e-24 Score=176.85 Aligned_cols=187 Identities=25% Similarity=0.447 Sum_probs=137.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.+..+. ...
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~ 100 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQ 100 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEE
T ss_pred CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc-eEE
Confidence 45678999999999999999999999999999887543321 123458999999999999999999998775 456
Q ss_pred eEEEEEEec----ceEe-eCCCcccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCce--eEEe-eeeecCc
Q psy8823 217 NIAVEVEFA----PVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQH--YSIS-HFATADE 284 (386)
Q Consensus 217 ~~~l~v~~~----p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~--~~~~-~~~~~~~ 284 (386)
.+.+.|... |.+. ..+....+..|+.+.|.|.+.|.|.+.+.|++ ++.. +..... .... .......
T Consensus 101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 178 (241)
T 3grw_A 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK--VGPDGTPYVTVLKSWISESV 178 (241)
T ss_dssp EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCS--SCTTTCCCEEEEEEEECSBS
T ss_pred EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcc--cCCCCceeeeeeeEeeeeec
Confidence 677777652 3332 23455668889999999999999999999999 6665 322221 1111 1112222
Q ss_pred eeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC
Q psy8823 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331 (386)
Q Consensus 285 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~ 331 (386)
.....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.++..
T Consensus 179 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~ 225 (241)
T 3grw_A 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225 (241)
T ss_dssp EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred CCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence 35678999999999999999999999999999999999887765543
No 124
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.93 E-value=5.4e-23 Score=188.18 Aligned_cols=269 Identities=15% Similarity=0.176 Sum_probs=163.9
Q ss_pred cCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 38 IGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 38 ~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
.|+.++|.|.+.+. |.+ .|+|++++.... ..........++.+.. ...|.|.....+ .|.|+|.+
T Consensus 149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~-----~~~~~~~~~~~g~~~~-------~s~L~i~~~~~~-~g~ytC~v 215 (512)
T 1zvo_C 149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQP-----QRTFPEIQRRDSYYMT-------SSQLSTPLQQWR-QGEYKCVV 215 (512)
T ss_pred CCCeEEEEEEEEeeecCceEEEEEcCcccCc-----eEecCceecCCCCEEE-------EEEEEEcHHHcC-CceEEEEE
Confidence 57899999999876 544 799999653210 0000001111222222 236889888877 99999999
Q ss_pred EEcccceeee----------EEEEEEecCC--------------------------------------------------
Q psy8823 116 IIGINNKISA----------EVDLQVRRPP-------------------------------------------------- 135 (386)
Q Consensus 116 ~~~~~~~~~~----------~~~l~v~~~p-------------------------------------------------- 135 (386)
.|..+..... ...+.+..+|
T Consensus 216 ~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 295 (512)
T 1zvo_C 216 QHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQ 295 (512)
T ss_pred EeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCC
Confidence 9865432211 1123333222
Q ss_pred --eeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeE
Q psy8823 136 --VISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 136 --~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~ 201 (386)
.+....+....+.+|+.++|.|.+.+.++ ..++|++++..+... ++.....+.|.|.....+|.|.
T Consensus 296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~ 375 (512)
T 1zvo_C 296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS 375 (512)
T ss_pred CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence 22222222223557999999999988644 389999999875411 1111224569999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEE----EecceEeeCCCcccccCCCcEE-EEEEEEecCCC--eeEEEeCCeeeeeecCcee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRLGQALQYDMD-LECHVEAYPPP--AIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~ 274 (386)
|+|.+.|..+....+.+.... ..+|.+...++.. .|+.+. |.|.+.|++++ .+.|+++|.. +......
T Consensus 376 y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~--~~~~~~~ 450 (512)
T 1zvo_C 376 VTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQRE--VNTSGFA 450 (512)
T ss_pred EEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeE--CcCcccc
Confidence 999999977642222222211 2456655443322 788999 99999986544 6899999987 4332111
Q ss_pred --EEeeeeecC-ceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEEe
Q psy8823 275 --SISHFATAD-EFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFESI 324 (386)
Q Consensus 275 --~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~ 324 (386)
......... ....+.|.+.....+|+|.|+|.|.|...... ....+.|..
T Consensus 451 ~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~ 505 (512)
T 1zvo_C 451 PARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY 505 (512)
T ss_pred ccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence 011111111 22345678888888889999999999976543 445555543
No 125
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.93 E-value=2.9e-25 Score=186.11 Aligned_cols=213 Identities=13% Similarity=0.075 Sum_probs=156.9
Q ss_pred EEeCCccEEEEEEeee-eCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCC---CCCCCe--EEEEEEecCCCCceeee
Q psy8823 146 VVSEGQPVQLECFAGG-HPTP--RISWRRENNAILPTGGSIYRGSILKIPQI---TKEDRG--TYYCVAENGVGKGTRRN 217 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g--~y~C~~~~~~~~~~~~~ 217 (386)
.+.+|+.++|.|.+.+ .|.+ .++|++++..+.. .....+..+.+..+ +..|+| .|+|.+.|..+. ....
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~ 90 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETL 90 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEE
Confidence 5789999999999988 6666 9999999988754 22233445555555 777887 499999998776 5677
Q ss_pred EEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
+.|.|...|..........+.+|+.+.|.|.+. |.+.+.| ++.. +... .....|.|..+..
T Consensus 91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~--~~~~-------------~~~~~l~i~~~~~ 151 (265)
T 2oz4_A 91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVP--AQPL-------------GPRAQLLLKATPE 151 (265)
T ss_dssp EEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCS--SSCC-------------SSEECCEEECCGG
T ss_pred EEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEE--ccCC-------------CCcEEEEEccccc
Confidence 888887643322223345577899999999997 8889999 6665 2111 1246688999999
Q ss_pred CCCeEEEEEEEcCC-Ccee---eEEEEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeeccc
Q psy8823 298 RQYGSYICRAANKL-GTSE---KTVELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSL 368 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~ 368 (386)
+|+|.|+|.|.|.. |... .++.|.|...|...... ....+..|+.++|.|.+.|.| ++|++++..+.....
T Consensus 152 ~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~ 231 (265)
T 2oz4_A 152 DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE 231 (265)
T ss_dssp GTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS
T ss_pred cCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc
Confidence 99999999998654 7665 67888888877654432 234678899999999998888 689999995444332
Q ss_pred ceeeeeeeeecccccCC
Q psy8823 369 LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ~~~~~i~~v~~~d~~~~ 385 (386)
|..|+++|++.|
T Consensus 232 -----~~~v~~~d~G~Y 243 (265)
T 2oz4_A 232 -----SVTVTRDLEGTY 243 (265)
T ss_dssp -----CEECCGGGCEEE
T ss_pred -----EEEeehhhCeEE
Confidence 234888888765
No 126
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=5.8e-25 Score=177.84 Aligned_cols=182 Identities=18% Similarity=0.338 Sum_probs=135.6
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC------------CCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------------PTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...........|.|.+++.+|+|.|+|.+.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 86 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence 3556778999999999999988899999999876531 1223333457899999999999999999999
Q ss_pred CCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEE-EEecCCCeeEEEeCCe-eeeeecCceeEE--eeeeecC
Q psy8823 209 GVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH-VEAYPPPAIVWIKEDT-QQVLTNNQHYSI--SHFATAD 283 (386)
Q Consensus 209 ~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~~~-~~~~~~~~~~~~--~~~~~~~ 283 (386)
..+. .....+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. . +........ .......
T Consensus 87 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~--l~~~~~~~~~~~~~~~~~ 164 (212)
T 1f97_A 87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM--LTADAKKTRAFMNSSFTI 164 (212)
T ss_dssp TTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEES--BC-----CBSCSSSCEEE
T ss_pred cCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccc--ccccccccccccCceeEe
Confidence 7663 246678888988887655444566788999999999 7899999999999998 6 322211100 0000000
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCce--eeEEEEEEEe
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTS--EKTVELFESI 324 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~ 324 (386)
......|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 165 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1135689999999999999999999999988 4566666653
No 127
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.93 E-value=1e-24 Score=177.08 Aligned_cols=190 Identities=20% Similarity=0.345 Sum_probs=137.4
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ................|.
T Consensus 5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~------------~~~~~~~~~~~~~~~~l~ 72 (217)
T 2vr9_A 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE------------KKSHRVQFKDGALFFYRT 72 (217)
T ss_dssp -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSS------------SSSSEEECTTSCEEESSC
T ss_pred cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCC------------ccceeEEecCCceEEEEE
Confidence 45678899999989999999999999999988888999999886542210 001111112222222457
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEec-CCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|.. +|.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV-EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151 (217)
T ss_dssp CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSB-CCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEE-CCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence 8899999999999999987655545556666654 333322 3445678899999999999 899999999999998876
Q ss_pred CCC--------c-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 178 PTG--------G-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 178 ~~~--------~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
... . .......|.|.+++.+|+|.|+|.+.|..|...+....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp CCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 321 1 11234689999999999999999999998875444444443
No 128
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.93 E-value=4.3e-25 Score=179.32 Aligned_cols=190 Identities=23% Similarity=0.452 Sum_probs=137.8
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc----eEEeeeE----EEECCCCCCCCeEEEE
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSI----LKIPQITKEDRGTYYC 204 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~----l~i~~~~~~d~g~y~C 204 (386)
.+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....... |.|.+++.+|+|.|+|
T Consensus 8 ~~P~i~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 8 QSPRIIEH-PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCEEEEC-CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred CCCEEecC-CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 34555543 4557889999999999999989999999999988765421 1111222 3688899999999999
Q ss_pred EEecCCCCceeeeEEEEEEe-cceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 205 VAENGVGKGTRRNIAVEVEF-APVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
.+.|..+...+..+.+.|.. +|.+...+....+..|+.+.|.|.+ .|.|.+.+.|++++.. +..............
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~--~~~~~~~~~~~~~~~ 164 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVP--LDDLKAMSFGASSRV 164 (217)
T ss_dssp EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEE--ECCCCCC---CCCSE
T ss_pred EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcC--CCcccccccccCCcE
Confidence 99998776445566777765 4445555566678899999999998 8999999999999987 432221111100000
Q ss_pred CceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 283 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.....+.|.|.++..+|+|.|+|.|.|..|....+..+.+...
T Consensus 165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~ 207 (217)
T 2vr9_A 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207 (217)
T ss_dssp EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence 0113457999999999999999999999999988766666543
No 129
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.93 E-value=7.4e-25 Score=177.26 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=133.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc------eEEeee-----EEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG------SIYRGS-----ILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~~-----~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+..... ....+. .|.|.+++.+|+|.|+|.+.|..
T Consensus 16 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~ 95 (212)
T 2v9r_A 16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95 (212)
T ss_dssp CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETT
T ss_pred CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCC
Confidence 4566789999999999999999999999999988754321 111122 34556779999999999999987
Q ss_pred CCceeeeEEEEEEecc-eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceee
Q psy8823 211 GKGTRRNIAVEVEFAP-VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTD 287 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 287 (386)
+...+..+.+.|...| .+...+....+..|+.+.|.|.+ .+.|.+.+.|++++.. +.... ++.. .+
T Consensus 96 g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~--l~~~~~~~~~---------~~ 164 (212)
T 2v9r_A 96 GEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITI---------RG 164 (212)
T ss_dssp EEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEE--ECTTSTTEEE---------ET
T ss_pred CceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCcc--CCCCcceEEc---------cC
Confidence 7644566777776643 34444556678899999999998 8999999999999987 44322 2211 34
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCCCC
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPVCP 329 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~ 329 (386)
+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|...|...
T Consensus 165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207 (212)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence 58999999999999999999999998765 4899998777644
No 130
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.3e-24 Score=174.11 Aligned_cols=164 Identities=25% Similarity=0.328 Sum_probs=136.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+..+...+..+.+.
T Consensus 25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 99 (218)
T 3k0w_A 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99 (218)
T ss_dssp CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence 45567889999999999999999999999999887543 2467999999999999999999998776556678888
Q ss_pred EEec---------------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 222 VEFA---------------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 222 v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +... .
T Consensus 100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~--~~~~--------------~ 163 (218)
T 3k0w_A 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--LTHE--------------T 163 (218)
T ss_dssp EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEE--CTTC--------------C
T ss_pred EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEE--CCCC--------------C
Confidence 8765 5666666777888999999999999999999999999887 3322 2
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCc-eeeEEEEEEEecC
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGT-SEKTVELFESIIP 326 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p 326 (386)
...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 457999999999999999999999887 5567888776543
No 131
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.92 E-value=1e-24 Score=179.64 Aligned_cols=209 Identities=16% Similarity=0.234 Sum_probs=126.0
Q ss_pred CCcccchhHHHHHHHhhhcccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE
Q psy8823 1 MESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80 (386)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 80 (386)
|+....++++++++++........+.+...+....+.+|++|+|.|.+.+.+.+.+.|+|+........+....+.....
T Consensus 1 M~~~~~~ll~~~~l~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 80 (237)
T 3sob_L 1 MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSG 80 (237)
T ss_dssp -----------------------CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTT
T ss_pred CCcchhHHHHHHHHHHhhcccCccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCC
Confidence 55543333333333333333444566777778888999999999999998888889999965332211111111111111
Q ss_pred eccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEE
Q psy8823 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLEC 157 (386)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C 157 (386)
.++++... ...++++|.|.+++.+|+|.|+|.+.+..+........|.|.. +|.+....+.. .+.+|+.++|.|
T Consensus 81 ~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C 157 (237)
T 3sob_L 81 VPSRFSGS--GSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSD-EQLKSGTASVVC 157 (237)
T ss_dssp CCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCH-HHHHHTEEEEEE
T ss_pred CCCcEEEE--cCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCCh-hhccCCceEEEE
Confidence 23455544 2346779999999999999999999765443334445666643 34333222111 123578899999
Q ss_pred Eeeee-C-CCeEEEEEcCeeeCCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 158 FAGGH-P-TPRISWRRENNAILPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 158 ~~~~~-~-~~~v~W~~~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+.+. | .+.++|++++..+... .+.......|.|.+...+|+|.|+|.+.|....
T Consensus 158 ~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 158 LLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp EEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred EEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 99874 4 4799999999877542 112223467899999999999999999997654
No 132
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.92 E-value=6.4e-26 Score=192.99 Aligned_cols=236 Identities=19% Similarity=0.164 Sum_probs=165.6
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+|.+... +....+.+|++++|.|.+.+. +.|++++..... .........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 ~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPS-VPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWT-LYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESC-CSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCE-ECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCC-CCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceE-EeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 34555544 345678999999999999773 999975532110 001112458999999999999999999997765
Q ss_pred ceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 213 GTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
.+..+.|.|..+|. +...+....+.+|+.+.|.|.+.+ |. +.+.|++++... +....++... ....
T Consensus 77 -~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~-~~~~~~~~~~--------~~~~ 145 (292)
T 4dkd_C 77 -GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRP-LMRHTNYSFS--------PWHG 145 (292)
T ss_dssp -CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCC-CCSSCCEECC--------SSSC
T ss_pred -cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCc-cccCCccccc--------CCce
Confidence 36778888887775 344556677889999999999987 44 689999984331 3333332211 2334
Q ss_pred EEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecCCC----CCccccc
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSE-KTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAEQP----TSWEPQR 360 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~ 360 (386)
|.|.++..+|+|.|+|.|.|..|... ..+.|.|...+..+| .+....+..|+.++|.|.+.+.| +.|.+++
T Consensus 146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~ 225 (292)
T 4dkd_C 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN 225 (292)
T ss_dssp CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSS
T ss_pred EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCC
Confidence 99999999999999999999988664 478888886332222 23344456899999999997765 4788998
Q ss_pred ceeeeccc-------c---eeeeeeeeecccccCC
Q psy8823 361 KQLNCSSL-------L---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 361 ~~l~~~~~-------~---~~~~i~~v~~~d~~~~ 385 (386)
..+..... + ..|.|.+|+.+|+..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 260 (292)
T 4dkd_C 226 TKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260 (292)
T ss_dssp CCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEE
T ss_pred cccccCccceeccceeeeEEEEEECccChhcCeEE
Confidence 87653322 1 2699999999998765
No 133
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.92 E-value=2.9e-24 Score=171.87 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=127.1
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.+.+.+|+.++|.|.+.|.|.+.+.|+++.......... ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V 88 (202)
T 1vca_A 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEI 88 (202)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEE
T ss_pred cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEE
Confidence 345669999999999999999999999843221111111 112456999999999999999999998765 567888999
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
..+|..........+.+|+.++|.|.+.|.++ +++.|++++.. +.... ................|.|..+..+|
T Consensus 89 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~--l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~d~ 165 (202)
T 1vca_A 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL--MKSQE-FLEDADRKSLETKSLEVTFTPVIEDI 165 (202)
T ss_dssp EBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEE--EEEEE-CCSCCSSCCCEEEEEEEEECCCGGGT
T ss_pred EeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeE--Ccccc-cccccCcCcceEEEEEEEEEeeeccC
Confidence 88775322112256789999999999998644 37999999987 32211 00000000012235667888899999
Q ss_pred CeEEEEEEEcCCCc-------eeeEEEEEEEecCC
Q psy8823 300 YGSYICRAANKLGT-------SEKTVELFESIIPV 327 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~-------~~~~~~l~v~~~p~ 327 (386)
+|.|+|.|.|..|. .+.++.|.|.++|.
T Consensus 166 ~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 166 GKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp TCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred CCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 99999999999876 45678888887775
No 134
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.92 E-value=5e-24 Score=173.06 Aligned_cols=176 Identities=20% Similarity=0.350 Sum_probs=138.8
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.....+.|...|....+.+|+++.|.|.+.+.+.+.+.|++++..+.. ....+|.
T Consensus 14 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~-------------------------~~~~~L~ 68 (218)
T 3k0w_A 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN-------------------------GNTSELI 68 (218)
T ss_dssp -----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTT-------------------------CCSSEEE
T ss_pred ccCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCC-------------------------CCCCEEE
Confidence 345667899999999999999999999999888889999998764411 0123899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---------------CeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---------------PVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|... |.+.. .+....+.+|+.+.|.|.+.+.|.
T Consensus 69 i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~G~~v~L~C~~~g~p~ 147 (218)
T 3k0w_A 69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPI 147 (218)
T ss_dssp ETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEE-CCCCEEECTTCCEEEECEEEBSSC
T ss_pred EccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEE-CCCceeecCCCcEEEEEEecccCC
Confidence 99999999999999999876655566778888765 23332 234567889999999999999999
Q ss_pred CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 165 PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
+.+.|++++..+.... ...|.|.+++.+|+|.|+|.+.|..+...+..+.|.|...+
T Consensus 148 ~~v~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 148 PHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp CEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CeEEEEECCEECCCCC-----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 9999999998875543 35799999999999999999999888767778888886543
No 135
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.92 E-value=2.6e-24 Score=172.44 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=126.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
..+.+|+.++|.|.+.+.|.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.+.|.. .+..+.|.|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~ 87 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------SSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVH 87 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------SEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------cEEEEecccccCCEEEEEEeCCCc---ccccEEEEEe
Confidence 5688999999999999887765 99999998875443 679999999999999999998742 3467788888
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
++|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|++++..+... .....|.|.++..+|+|.
T Consensus 88 ~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~---------------~~~~~L~i~~v~~~D~G~ 151 (204)
T 3sgj_C 88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF---------------HHNSDFYIPKATLKDSGS 151 (204)
T ss_dssp CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------------EECCCEEESSCCGGGCEE
T ss_pred cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc---------------cCCceEEECcCCcccCEE
Confidence 8887655444 667789999999999776 45689999999872211 135679999999999999
Q ss_pred EEEEEEc-CCCceeeEEEEEEEecCCCC
Q psy8823 303 YICRAAN-KLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 303 Y~C~a~n-~~g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|.| ..+..+..+.|.|...|..|
T Consensus 152 Y~C~a~n~~~~~~s~~~~l~V~~~~~~P 179 (204)
T 3sgj_C 152 YFCRGLVGSKNVSSETVQITITQGLAVS 179 (204)
T ss_dssp EEEEEEETTEEEECCCEEEEEEC-----
T ss_pred EEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence 9999999 45566678888888766544
No 136
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.92 E-value=2.5e-24 Score=173.62 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=137.2
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEec----cceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
+.+.+.+..+.+|++++|.|...+.+...+.|++++.......+. +.........+ +++... .+++|.|.
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~ 76 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQ 76 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TTSCEEEC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cCCeEEEc
Confidence 455566677999999999999877778889999876533221111 11111111111 222222 22379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+++.+|+|.|+|.+.+......+..+.|.|..+ |.+..... . +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~ 152 (208)
T 3r4d_A 77 MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT-T--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL 152 (208)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS-S--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred cccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCc-e--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence 999999999999999875566677788888765 33333222 2 77899999999998865 79999999988765
Q ss_pred CCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 179 TGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 179 ~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
...... .+..|.|.++..+|+|.|+|.+.|..+...+..+.|.|..+|..
T Consensus 153 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 153 TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204 (208)
T ss_dssp CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence 544333 24789999999999999999999999998888999998887754
No 137
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.92 E-value=7.1e-25 Score=174.88 Aligned_cols=179 Identities=17% Similarity=0.275 Sum_probs=119.7
Q ss_pred ceeeecCCcEEEEEE---EeeCCCCcEEEEecCCccccccccccCCceeEEecc-ceeeecCCCcceEEEEEcccCCCCC
Q psy8823 33 EQIKDIGGTVELKCS---VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS-RFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
...+.+|++++|.|. +.+.|.+.|.|+|++..................... +.........+.++|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 356889999999996 446688899999988654322111111111111111 1111112234567999999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC----Cce-E
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT----GGS-I 183 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~----~~~-~ 183 (386)
|.|+|.+.|.. +..+..+.|.|..||.+... +....+.+|+.++|.|.+.|.|.|.++|+++++.+... ... .
T Consensus 82 G~Y~C~a~n~~-g~~~~~~~l~V~~p~~~~~~-~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 82 GNYLCRMKLGE-TEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp EEEEEEEEETT-EEEEEEEEEEEEEEEEEEEE-EEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred eEEEEEEEcCC-CcEEEEEEEEecCCceeeec-ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 99999998764 44567788888877766543 34455778999999999999999999999876554321 111 1
Q ss_pred Eeee---EEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 184 YRGS---ILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 184 ~~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..++ .+.+.+++.+|+|.|+|.|.|..|..
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a 192 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 192 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 1222 34557899999999999999999973
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.92 E-value=4e-26 Score=198.88 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=151.9
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIY 184 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~ 184 (386)
|.|.|+|...+. ...+.+.+..+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+..... ...
T Consensus 136 ~~~~~~C~~~~~-----l~~l~~~~c~~P~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~ 209 (347)
T 2ifg_A 136 PEQKLQCHGQGP-----LAHMPNASCGVPTLKVQ-VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL 209 (347)
T ss_dssp GGGCCCCSSSSC-----SSCCCCTTCCCCEEEEE-CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCS
T ss_pred cccCCCCCCChH-----HhcCCcccCCCCceecc-CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceec
Confidence 568999976431 11122222235554433 2345688999999999999999999999999876432211 122
Q ss_pred eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC
Q psy8823 185 RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED 263 (386)
Q Consensus 185 ~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 263 (386)
....|.|.+++.+|+| .|+|.+.|..+. .+..+.+.|.++|.+ .......|+.++|.|.+.|.|.|.+.|++++
T Consensus 210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g 284 (347)
T 2ifg_A 210 PSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG 284 (347)
T ss_dssp SEEEEEEESCCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred ccceEEEeeCChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence 4668999999999999 999999998776 466788888888876 1223457899999999999999999999999
Q ss_pred eeeeeecCceeEEeeee--ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 264 TQQVLTNNQHYSISHFA--TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.. +............ .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 285 ~~--l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 285 SV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EE--CCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EE--CCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 88 4433332221111 1222347789999999999999999999999999999999886544
No 139
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.92 E-value=5.7e-24 Score=170.58 Aligned_cols=170 Identities=16% Similarity=0.268 Sum_probs=124.8
Q ss_pred cceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+.+.|.|.+.. .|.+.|+|++++..+. .+.++.+..+...+..+|.|.+++.+|+|.
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~--------------~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~ 75 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF--------------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC--------------SSSSCEEEECTTTCEEEEEESCCCGGGCEE
T ss_pred CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc--------------cCCCEEEEEeCCCCEEEEEECCCChhhCEE
Confidence 3456889999999999864 6889999999987542 233444444444566789999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEe---------------------cCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQVR---------------------RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRIS 168 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~ 168 (386)
|+|.+.|. .......+.+. .+|.+.... ...+.+|+.+.|.|.+.|. |.+.++
T Consensus 76 Y~C~a~Ng---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p~i~ 150 (207)
T 3rbs_A 76 YTFQLQDG---KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIV 150 (207)
T ss_dssp EEEEEEET---TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEE
T ss_pred EEEEEECC---CeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcEEEEEEEeCCCCCCEEE
Confidence 99999872 22222232211 145443322 3578899999999999998 899999
Q ss_pred EEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 169 WRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 169 W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+|++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 151 W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~ 204 (207)
T 3rbs_A 151 WYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLV 204 (207)
T ss_dssp EEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEC
T ss_pred EEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE-EEEEEEEe
Confidence 9999998866443222 2457999999999999999999999887 44444443
No 140
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=170.49 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=131.4
Q ss_pred EeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 147 VSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
...++.+.|.|.+.+. |.+.++|++++..+......... ...|.|.+++.+|+|.|+|.+.|..+. ....+.+.
T Consensus 14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~ 92 (212)
T 2r15_A 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLS 92 (212)
T ss_dssp EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEC
T ss_pred EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEE
Confidence 3367788899988774 57899999999988765544322 245999999999999999999997765 34555555
Q ss_pred EEe--------------------cce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeee
Q psy8823 222 VEF--------------------APV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280 (386)
Q Consensus 222 v~~--------------------~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 280 (386)
|.. .|. +...+....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++......
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~~ 170 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHCNLKFEA 170 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE--ECCCSSEEEEEET
T ss_pred EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE--CccCCCEEEEEcC
Confidence 432 233 33344556788999999999999999999999999988 5555554433211
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 171 ----~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 171 ----GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp ----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 124689999999999999999999999999999998886
No 141
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.92 E-value=6.4e-24 Score=170.20 Aligned_cols=174 Identities=19% Similarity=0.317 Sum_probs=135.1
Q ss_pred cCCCceEEEeCCccEEEEEE-eeeeCC-CeEEEEEcCeeeCCC--CceE--EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 139 DNSTRSLVVSEGQPVQLECF-AGGHPT-PRISWRRENNAILPT--GGSI--YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 139 ~~~~~~~~~~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
...+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+... .... ..+..|.|.+++.+|+|.|+|.+.+..+.
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 91 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT 91 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence 34456678999999999999 888888 999999998776422 1111 13567999999999999999999986644
Q ss_pred cee--eeEEEEEE-------ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 213 GTR--RNIAVEVE-------FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 213 ~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
... ..+.+.+. .+|.+........+..|+.+.|.|.+.|.|.+.+.|++++.. +.......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~-------- 161 (201)
T 3s97_C 92 KSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP--MPSTAEIS-------- 161 (201)
T ss_dssp EEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBC--CCTTCEEE--------
T ss_pred cchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCc--CCCceeec--------
Confidence 222 23343332 455566555577788999999999999999999999999986 44332221
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 162 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 162 -TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp -TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 135689999999999999999999999999999998875
No 142
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.92 E-value=9.3e-24 Score=165.22 Aligned_cols=168 Identities=19% Similarity=0.326 Sum_probs=131.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.+....+.+|++++|.|.+.+.+.+. +.|++++..+. ..+.+|.|
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~--------------------------~~~~~L~i 58 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------------------------SQASSYFI 58 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------------------------SSCSEEEE
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc--------------------------CCceEEEE
Confidence 4578888888888899999999999998776655 89999875431 01238999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+. ..+..+.|.|..++...... ...+.+|+.++|.|.+.+.+++ .+.|++++..+..
T Consensus 59 ~~~~~~d~G~Y~C~~~n~---~~s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~- 132 (175)
T 1fnl_A 59 DAATVNDSGEYRCQTNLS---TLSDPVQLEVHIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY- 132 (175)
T ss_dssp SSCCGGGCEEEEEECSSS---CCCCCEEEEEECSSEEEECS--CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-
T ss_pred eCCCcccCEEEEEEeeCC---cccccEEEEEeCCCceeeCC--CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-
Confidence 999999999999998752 23566778887665544332 2458899999999999876654 9999999987632
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
......|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..
T Consensus 133 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 133 ---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ---CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 234678999999999999999999997665566677777754
No 143
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.92 E-value=2.9e-23 Score=166.01 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=128.1
Q ss_pred eeeeccceee-ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIK-DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v-~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+.+.|....+ .+|++++|.|.+.|.|.+.+.|++...... .. +... ...+..|.|.+++.
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--------~~-------~~~~----~~~~~~L~I~~v~~ 63 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--------NG-------KVTN----EGTTSTLTMNPVSF 63 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--------SS-------EEEE----ETTEEEEEESSCCG
T ss_pred EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--------cc-------eEEE----cCCccEEEECcCCH
Confidence 5566666554 599999999999988888899998432110 00 0000 11244799999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEEcCeeeCCCCc-
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRRENNAILPTGG- 181 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~- 181 (386)
+|+|.|+|.+.|..+ ..+..+.|.|..+|......+. ..+.+|+.++|.|.+.+.++ +.++|++++..+.....
T Consensus 64 ~D~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~ 141 (202)
T 1vca_A 64 GNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141 (202)
T ss_dssp GGCSEEEEEEEETTE-EEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEEEEECCc-eEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence 999999999998753 4577888999877643322122 35789999999999987644 37999999987642211
Q ss_pred -------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc------eeeeEEEEEEecce
Q psy8823 182 -------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG------TRRNIAVEVEFAPV 227 (386)
Q Consensus 182 -------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~------~~~~~~l~v~~~p~ 227 (386)
.......|.|.....+|.|.|+|+|.|..+.. ....+.|.|+++|.
T Consensus 142 ~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 142 EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp SCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 12234557888888889999999999976642 45678899999885
No 144
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.92 E-value=1.1e-23 Score=168.66 Aligned_cols=170 Identities=18% Similarity=0.315 Sum_probs=132.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.|....+.+|++++|.|.+.+.+.+. +.|++++..+.. . ..+|.|
T Consensus 5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~---------------~-----------~~~L~i 58 (204)
T 3sgj_C 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS---------------Q-----------ASSYFI 58 (204)
T ss_dssp -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC---------------C-----------SSEEEE
T ss_pred CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc---------------C-----------ccEEEE
Confidence 3567888888888899999999999999876655 999998754311 0 138999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+ ...+..+.|.|..+|.+..... ..+.+|+.++|.|.+.+. |.+.+.|++++..+..
T Consensus 59 ~~v~~~D~G~Y~C~a~n---~~~s~~~~l~V~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~- 132 (204)
T 3sgj_C 59 DAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY- 132 (204)
T ss_dssp SSCCGGGCEEEEEEETT---SBCCCCEEEEEECSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred ecccccCCEEEEEEeCC---CcccccEEEEEecCceEecCCc--eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-
Confidence 99999999999999864 3445677888887776554433 468899999999999655 5678999999987632
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
......|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|
T Consensus 133 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 133 ---FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176 (204)
T ss_dssp ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ---ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence 23456899999999999999999999655446677888887655
No 145
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.92 E-value=3.6e-24 Score=178.87 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=114.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|+...|.+|+++.|.|.+....+..+.|.-.-... .. ...+.....|.|.+++.+
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~------------------~~---~~~g~~~~~~~l~~v~~~ 60 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK------------------EL---LLPGNNRKVYELSNVQED 60 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC------------------CC---CCSCSSEEEEEEESCCSC
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc------------------cc---ccCCCceEEEEEEecccC
Confidence 456677888999999999999974444448885421110 00 000112225788888753
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC--eEEEEEcCeeeCCCCce-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP--RISWRRENNAILPTGGS- 182 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~- 182 (386)
|.|+|++.. .+...++.+.|.|+.+|...........+.+|+.++|.|.+.+. |.. .|+|+|++..+......
T Consensus 61 --~~y~C~~~~-~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~ 137 (291)
T 1mq8_A 61 --SQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137 (291)
T ss_dssp --CCCEEEEEC-SSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB
T ss_pred --CeEEEEEEc-CCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC
Confidence 469999864 34566788899999888655444433347789999999999665 443 58999999776422210
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCC-------ceeeeEEEEEEecceEeeC-CCcccccCCCcEEEEEEEEecCC
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGK-------GTRRNIAVEVEFAPVITVP-KPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-------~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
......|.+...+.+|.+.|+|+|.+..+. ..+....|.|+++|..... .....+.+|+.++|.|.+.|+|+
T Consensus 138 ~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P 217 (291)
T 1mq8_A 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217 (291)
T ss_dssp TTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------
T ss_pred CCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCC
Confidence 112346777777777777999999986442 2356678889888643211 11225678999999999999866
Q ss_pred C---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec---cc--CCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 255 P---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI---EK--RQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 255 ~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
+ .+.|++++.. +...... .+..+.+... .. ++.+.|+|.|.|.....++...|.|...|
T Consensus 218 ~~~~~v~w~~~g~~--l~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 218 VSEAQVHLALGDQR--LNPTVTY-----------GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccEEEEEECCEe--cCceeee-----------cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 5 5899999887 3321111 1112222222 23 44667889998866667778888877655
Q ss_pred C
Q psy8823 327 V 327 (386)
Q Consensus 327 ~ 327 (386)
.
T Consensus 285 ~ 285 (291)
T 1mq8_A 285 A 285 (291)
T ss_dssp -
T ss_pred C
Confidence 4
No 146
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=2.1e-23 Score=164.68 Aligned_cols=167 Identities=15% Similarity=0.277 Sum_probs=129.5
Q ss_pred EEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
..+.+|+.++|.|.+.+.+.+ .+.|++++..+...... .....|.|. +.+|+|.|+|.+.|. ....+.|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V 80 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQL 80 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEE
Confidence 357889999999999887766 89999999887554322 223456666 689999999999982 235678888
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEe---CCeeeeee-cCceeEEeeeeecCceeeeEEEEeecc-
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIK---EDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIE- 296 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~- 296 (386)
.++|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++...... ...++.+... .....|.|.++.
T Consensus 81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-----QGRSELHIENLNM 155 (184)
T ss_dssp CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-----TTEEEEEECSCCT
T ss_pred ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec-----CCeeEEEEeeccc
Confidence 9999888777777788999999999999999 78999999 44442211 1233333211 134689999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.+|+|.|+|.|.|..|....++.|.|.
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEe
Confidence 999999999999999999999888875
No 147
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.91 E-value=1.3e-25 Score=193.73 Aligned_cols=232 Identities=14% Similarity=0.156 Sum_probs=146.4
Q ss_pred ccEEEEEEeeee-C-CCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 151 QPVQLECFAGGH-P-TPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 151 ~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
+.+.|.|.+.+. | .+.++|+++|..+..... .....+.|.|.+...+|+|.|+|.+.|..+. ....+.
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTK 103 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEEC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeee
Confidence 699999999886 3 368999999988754321 1112346788888888999999999997654 222222
Q ss_pred EE---EEecceE-eeCCCcccccCCCcEEEEEEEEec-CCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 220 VE---VEFAPVI-TVPKPRLGQALQYDMDLECHVEAY-PPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 220 l~---v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~-p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
+. +...|.+ ...+....+.+|+.+.|.|.+.|. |.+ .+.|++++... +........ ..........+.|.
T Consensus 104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~-~~~~~~~~~-~~~~g~~~~~~~L~ 181 (323)
T 2wqr_A 104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKP-VNHSTRKEE-KQRNGTLTVTSTLP 181 (323)
T ss_dssp CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCC-CCCCCCEEE-ECTTSCEEEEEEEE
T ss_pred cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcc-cccccCCCc-cCCCCCEEEEEEEE
Confidence 10 1123433 333444567789999999999886 455 89999976331 221111110 00111112456899
Q ss_pred EeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC----CCCceeecCcceeeeEEecC-CC----CCcccccce
Q psy8823 292 VITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ----TQPSELLPLRNVNMAVIFAE-QP----TSWEPQRKQ 362 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~----~~~~~~~~~~~~~~~c~~~~-~p----~~W~~~~~~ 362 (386)
|.++..+|+|.|+|.|.|..+.......+.+......+|. ........|+.++|.|.+.+ .| ++|++||+.
T Consensus 182 I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 261 (323)
T 2wqr_A 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQ 261 (323)
T ss_dssp CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEE
Confidence 9999999999999999998754433333322100111111 11112223889999999966 33 689999998
Q ss_pred eeeccc------------c---eeeeeeeeecccccCC
Q psy8823 363 LNCSSL------------L---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 363 l~~~~~------------~---~~~~i~~v~~~d~~~~ 385 (386)
|..+.. + ..|.|..+..+|+..|
T Consensus 262 l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y 299 (323)
T 2wqr_A 262 LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEF 299 (323)
T ss_dssp CCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCE
T ss_pred CCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEE
Confidence 865421 1 1589999999888754
No 148
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.91 E-value=1.9e-23 Score=168.87 Aligned_cols=183 Identities=12% Similarity=0.107 Sum_probs=126.6
Q ss_pred CceEEEeCC--ccEEEEEEeeeeCCCeEEEEEc---CeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEG--QPVQLECFAGGHPTPRISWRRE---NNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+..+.+.+| ++++|.|.+.+ |.+.++|+++ +..+....... .....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s 92 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 92 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence 456788899 99999999976 7789999985 44333222222 23457999999999999999999986554344
Q ss_pred eeEEEEEEe--cceEeeCCC-cccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCce-eEEeeeeec--Cceee
Q psy8823 216 RNIAVEVEF--APVITVPKP-RLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQH-YSISHFATA--DEFTD 287 (386)
Q Consensus 216 ~~~~l~v~~--~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 287 (386)
..+.|.|.. +|.+...+. ...+.+|+.++|.|.+.|.|. +.+.|++++.. +..... ......... .....
T Consensus 93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK--HQHKKLVNRDLKTQSGSEMKKFL 170 (213)
T ss_dssp CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS--CCSEEEEEEEECCCSSCSCEEEE
T ss_pred EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc--cceEEEeccccccccCccceeee
Confidence 446777743 344444333 347889999999999998654 47999999876 211111 000000000 02235
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 6899999999999999999999999999999999987664
No 149
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.91 E-value=3.6e-24 Score=186.40 Aligned_cols=219 Identities=17% Similarity=0.268 Sum_probs=141.7
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--CeeeC-----------------CCCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAIL-----------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ...+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (344)
T 1za6_B 8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR 87 (344)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence 345788999999999998763 578999997 33220 0111111 12479999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeee
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLT 269 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~ 269 (386)
.+|+|.|+|.+.|..+. ......|.|. .+|.+....+...+.+|+.++|.|.+.|. |. +.+.|++++......
T Consensus 88 ~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~ 166 (344)
T 1za6_B 88 SEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 166 (344)
T ss_dssp GGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEE
T ss_pred cccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCcee
Confidence 99999999999985432 3344567776 34555544444556789999999999987 64 699999998752111
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE--------------------ecCCCC
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES--------------------IIPVCP 329 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~--------------------~~p~~~ 329 (386)
..... ..........+.|.|.++..+| |.|+|.|.|..+.......+.+. .....+
T Consensus 167 ~~~~~---~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (344)
T 1za6_B 167 TFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE 242 (344)
T ss_dssp ECCCE---ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred ECCCe---ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence 00000 0011112235689999998888 99999999999875443332210 001111
Q ss_pred CC----CCCceeecCcceeeeEEecCC-C----CCcccccceeeec
Q psy8823 330 PQ----TQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS 366 (386)
Q Consensus 330 ~~----~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~ 366 (386)
|. .+......++.++|.|.+.|. | ++|.+||+.+..+
T Consensus 243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~ 288 (344)
T 1za6_B 243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY 288 (344)
T ss_dssp CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSE
T ss_pred CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCc
Confidence 11 112223456779999999773 3 5899999987643
No 150
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.91 E-value=2.2e-23 Score=170.85 Aligned_cols=194 Identities=18% Similarity=0.334 Sum_probs=139.2
Q ss_pred hcccccCCeeeeec----cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCc
Q psy8823 18 LTTAQRTPTISYIS----QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93 (386)
Q Consensus 18 ~~~~~~~p~i~~~~----~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (386)
......+|.+...+ ....+.+|+++.|.|.+.+.+.+.+.|++++..+...... ..... ..
T Consensus 9 ~~~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~~----~~ 73 (231)
T 3ojm_B 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI-----------GGYKV----RN 73 (231)
T ss_dssp ----CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGST-----------TCCEE----EG
T ss_pred ccCCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccc-----------cceee----ec
Confidence 33445567776655 6677999999999999998888899999988654211000 00011 11
Q ss_pred ceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEE
Q psy8823 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISW 169 (386)
Q Consensus 94 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W 169 (386)
.+.+|.|.+++.+|+|.|+|.+.+..+ .....+.|.|... |......+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus 74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W 152 (231)
T 3ojm_B 74 QHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152 (231)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEE
T ss_pred CcceEEEecCCcccCEEEEEEEecccC-cccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEE
Confidence 234899999999999999999987644 3456677777653 33333345667889999999999999999999999
Q ss_pred EE----cCeeeCCCCceEE-----------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 170 RR----ENNAILPTGGSIY-----------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 170 ~~----~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
++ ++..+........ ....|.|.++..+|+|.|+|.+.|..+. ....+.|.|..+|..
T Consensus 153 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC--
T ss_pred EECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccce-EeeEEEEEEecCCCC
Confidence 99 6665543332111 1346999999999999999999999887 577888888877653
No 151
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.91 E-value=4.6e-24 Score=172.77 Aligned_cols=172 Identities=20% Similarity=0.316 Sum_probs=131.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC----CCeEEEEEc----------------CeeeCC-----CCceEE-------eeeEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP----TPRISWRRE----------------NNAILP-----TGGSIY-------RGSIL 189 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~----------------~~~~~~-----~~~~~~-------~~~~l 189 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++ +..... ..+... ....|
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 3456788999999999998776 468999984 322221 111111 24579
Q ss_pred EECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeee
Q psy8823 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVL 268 (386)
Q Consensus 190 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~ 268 (386)
.|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+........+..|+.+.|.|.+ .|.|.+.+.|++++....+
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred EEccCChhhCeEEEEEEEeCCCc-cccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 99999999999999999998775 567888999888875544444457889999999999 8999999999996543223
Q ss_pred ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
...... ......|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 166 ~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 166 PTPWLA---------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp CGGGGG---------GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred Ccccee---------ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 222111 1135589999999999999999999999999999998886
No 152
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.91 E-value=4.6e-23 Score=163.94 Aligned_cols=177 Identities=23% Similarity=0.407 Sum_probs=132.0
Q ss_pred CCeeeeecc--ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQ--EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~--~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+. ...+.+|++++|.|.+.+.+.+.+.|++++..+.. ..++.... .+.+|.|.
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~----~~~~L~i~ 63 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--------------NEKYILKG----SNTELTVR 63 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCC--------------SSSEEEET----TTTEEEEC
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCC--------------CccEEEeC----CeeEEEEe
Confidence 567776544 45688999999999999888889999998865421 12222221 12379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc--CeeeCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE--NNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~ 179 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+.... ...+.+|+.+.|.|.+.+.|.+.+.|+++ +..+...
T Consensus 64 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~ 140 (192)
T 2va4_A 64 NIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHIIQLK--NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG 140 (192)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEEEC--CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTT
T ss_pred cCChhcCcEEEEEEEccccc-cceEEEEEEEccCcccccC--cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeecc
Confidence 99999999999999876443 3466778887777665432 34577899999999999999999999998 4444321
Q ss_pred -----CceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 180 -----GGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 180 -----~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
..... ....|.|.+++.+|+|.|+|.+.|..+. ....+.|.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V 191 (192)
T 2va4_A 141 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI 191 (192)
T ss_dssp CBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred ccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCc-eEEEEEEEe
Confidence 11111 1367999999999999999999999887 566677665
No 153
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.91 E-value=5.9e-23 Score=163.81 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=128.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+... ...........+|.|.+
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----------------~~~~~~~~~~~~L~i~~ 64 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-----------------RQNPLEPKNKARFSIPS 64 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-----------------EECCCSSSSEEEEEESS
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-----------------ccccccCCceEEEEecc
Confidence 46788888777 7899999999999986 66789999988654210 00001112345899999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.|..+ ...+..+.|.|.. +|.+..... ..+.+|+.++|.|.+.+. ++.+.|+|++..+..
T Consensus 65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~ 141 (196)
T 3p2t_A 65 MTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS--PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPL 141 (196)
T ss_dssp CCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESC--SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGG
T ss_pred CCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCc--ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccc
Confidence 999999999999998765 3456677788764 344433222 257899999999999774 458999999886643
Q ss_pred CCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEE
Q psy8823 179 TGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEV 222 (386)
Q Consensus 179 ~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v 222 (386)
.... ......|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.|
T Consensus 142 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 142 LCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp GSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred eeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 3221 12456899999999999999999999765 22344555554
No 154
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.91 E-value=9.4e-25 Score=176.21 Aligned_cols=180 Identities=19% Similarity=0.356 Sum_probs=133.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC------------CCCceEEeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------------PTGGSIYRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+.......|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 90 (209)
T 1nbq_A 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90 (209)
T ss_dssp CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence 455668899999999999988889999999876521 11223334578999999999999999999997
Q ss_pred CCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEee--eeecCce
Q psy8823 210 VGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISH--FATADEF 285 (386)
Q Consensus 210 ~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~ 285 (386)
.+. ..+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++.. +.......... .......
T Consensus 91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~~ 168 (209)
T 1nbq_A 91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV--MPTNPKSTRAFSNSSYVLNP 168 (209)
T ss_dssp TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC--CCSCSSSSSSCTTCCCCCCT
T ss_pred CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCee--CCCccccceeeeccceEEcC
Confidence 653 2456788888888876655555667889999999997 8999999999999987 33322110000 0000011
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEE
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFES 323 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~ 323 (386)
..+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp TTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 357899999999999999999999999884 44555543
No 155
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=165.41 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=113.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|.. .+.+|++|+|.|.+.+.+. .+.|+|++..+... . + .......+..|.|.+
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~------------~--~---~~~~~~~~~~L~i~~ 64 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD------------T--Q---NPLEPKNKARFSIPS 64 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE------------E--E---CCCSSTTEEEEEESS
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc------------c--c---cccCCccccEEEecc
Confidence 56888888764 7899999999999986655 89999988654210 0 0 001123456899999
Q ss_pred cCCCCCeEEEEEeEEcccc-eeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... + ...+.+|+.++|.|.+.+.| +.+.|+|++..+..
T Consensus 65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~-~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~ 141 (196)
T 2d3v_A 65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL-P-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLS 141 (196)
T ss_dssp CCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCE
T ss_pred CChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc-C-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccc
Confidence 9999999999999876442 335667788876 3444433 2 24678999999999998887 89999999987642
Q ss_pred CCce--E----EeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 179 TGGS--I----YRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 179 ~~~~--~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.... . .....|.|.+++.+|+|.|+|.+.|..+
T Consensus 142 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 142 WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred cccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 2111 0 1236899999999999999999998653
No 156
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.91 E-value=1.8e-23 Score=169.06 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=136.9
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ............++.... .+|.|.+++
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~------~~L~i~~v~ 73 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV--CYNSQITAPYADRVTFSS------SGITFSSVT 73 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEE--EETTEECGGGTTTEEEET------TEEEESCCC
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEE--ecCCcccccccCcEEeec------eeEEEcccC
Confidence 456677778889999999999999987888999999886531100 000000000122333221 489999999
Q ss_pred CCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEE-eeeeCCCeEEEEEcCe-eeCCCCc
Q psy8823 105 ETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENN-AILPTGG 181 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~-~~~~~~~ 181 (386)
.+|+|.|+|.+.+..+ ...+..+.|.|..+|....... ...+.+|+.++|.|. +.+.|.+.+.|++++. .+.....
T Consensus 74 ~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~ 152 (212)
T 1f97_A 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152 (212)
T ss_dssp GGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC-CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred cccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC-ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence 9999999999998654 2446778888888776543322 245889999999999 6899999999999998 6654322
Q ss_pred e---------E--EeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEe
Q psy8823 182 S---------I--YRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEF 224 (386)
Q Consensus 182 ~---------~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~ 224 (386)
. . .....|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1 1 125679999999999999999999998875 45667777653
No 157
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=171.27 Aligned_cols=181 Identities=19% Similarity=0.354 Sum_probs=129.9
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
....+.+|+++.|.|.+.+.+.+.+.|++++..+...... ..... .....+|.|.+++.+|+|.|
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~~----~~~~~~L~i~~v~~~d~G~Y 87 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----------GGIKL----RHQQWSLVMESVVPSDRGNY 87 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGST-----------TCCEE----EGGGTEEEECSCCGGGCEEE
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcc-----------cceee----eccceEEEEEeCCcccCEEE
Confidence 3566899999999999998888899999988654221000 00011 11233899999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE----cCeeeCCCCceE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR----ENNAILPTGGSI 183 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~----~~~~~~~~~~~~ 183 (386)
+|.+.+..+ .....+.|.|.. +|......+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.......
T Consensus 88 ~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~ 166 (241)
T 3grw_A 88 TCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166 (241)
T ss_dssp EEEEEETTE-EEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCC
T ss_pred EEEEeecCC-ceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCcee
Confidence 999987644 345667777765 23444444556678899999999999999999999999 676654443211
Q ss_pred ------------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEe
Q psy8823 184 ------------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229 (386)
Q Consensus 184 ------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 229 (386)
.....|.|.++..+|+|.|+|.+.|..+. .+..+.|.|..+|...
T Consensus 167 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAE 223 (241)
T ss_dssp EEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEC-------
T ss_pred eeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce-EEEEEEEEecCCCCCC
Confidence 13567999999999999999999999887 5678888888777543
No 158
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.91 E-value=3.5e-24 Score=173.49 Aligned_cols=194 Identities=18% Similarity=0.245 Sum_probs=132.4
Q ss_pred eeccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccc--cccc-ccCCceeE----Eeccceeeec-CCCcceE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVT--EPLP-ISTGSSLI----IRDSRFAIRY-DTASSTY 96 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~--~~~~-~~~~~~~~----~~~~~~~~~~-~~~~~~~ 96 (386)
..+....+.+|++++|.|.+.+.+ .+.+.|++++..... .... ...+.... ...+++.+.. +...+++
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 84 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA 84 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence 344566689999999999998765 358999996543210 0011 11111111 0123333322 2234566
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCee
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNA 175 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~ 175 (386)
+|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|...... ....+.+|+.++|.|.+ .+.|.+.+.|++++..
T Consensus 85 ~L~i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~ 162 (214)
T 3jz7_A 85 SINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCF-VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS 162 (214)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCBSCEEE-EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred cEEEccCChhhCeEEEEEEEeCCC-ccccEEEEEEEcCCCCceee-eecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence 899999999999999999987644 44777889998877654321 12236789999999999 8999999999996433
Q ss_pred --eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec
Q psy8823 176 --ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA 225 (386)
Q Consensus 176 --~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~ 225 (386)
+.........+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+
T Consensus 163 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P 213 (214)
T 3jz7_A 163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVVPP 213 (214)
T ss_dssp CCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEECCBCC
T ss_pred CccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCc-EEEEEEEEEeCC
Confidence 2222122223568999999999999999999999887 466777777543
No 159
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.91 E-value=8e-24 Score=171.31 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=125.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...+ ...+.+|++|+|.|.+.+.+.+.+.|+|.........+............+++.... ..++++|.|.+++.
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 79 (213)
T 3mj8_L 3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQA 79 (213)
T ss_dssp CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCCh
Confidence 344445 677999999999999998888899999954322111111111111111233444433 34677999999999
Q ss_pred CCCeEEEEEeEEccc--ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeC-C-CeEEEEEcCeeeC
Q psy8823 106 TDAGYYRCQVIIGIN--NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHP-T-PRISWRRENNAIL 177 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~-~~v~W~~~~~~~~ 177 (386)
+|+|.|+|.+.+..+ ......+.|.|. .+|.+....... .+.+|+.++|.|.+.+.+ + +.++|+++|..+.
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 158 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSS-EELKTNQATLVCMINGFYPADVAVTWEADGTPIT 158 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCc-ccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence 999999999998765 345666788887 455554332221 233799999999998863 3 4899999998875
Q ss_pred CC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 178 PT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 178 ~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.. .........|.|.++..+|+|.|+|.+.|..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 159 QGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp TTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred CCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 42 122233466999999999999999999997654
No 160
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.91 E-value=8.4e-24 Score=165.68 Aligned_cols=170 Identities=24% Similarity=0.306 Sum_probs=130.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+...+....+.+|++++|.|.+.+.+.+ .+.|++++..+.. .+.+|.|.
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------------------------~~~~L~i~ 56 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------------------------TNSSLNIV 56 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------------------------CSSEEEEC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------------------------CceEEEEe
Confidence 46788888888889999999999999877664 6999998754310 12389999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
+++.+|+|.|+|.+.+. ..+..+.|.|..++...... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 57 ~v~~~d~G~Y~C~~~~~---~~s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (176)
T 1f2q_A 57 NAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW- 130 (176)
T ss_dssp SCCGGGCEEEEEECTTS---SCCCCEEEEEECSSEEEEES--CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-
T ss_pred ccceecCEEEEEEcCCc---cccccEEEEEeCcceeecCC--cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-
Confidence 99999999999998643 23556777777555444332 2467899999999999 45666799999999877432
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
..+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 131 ---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred ---cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 23567999999999999999999997555466778899888774
No 161
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.91 E-value=1.3e-22 Score=162.65 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=123.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCC-----CeEEEEEcCeeeCC-CCceEE-------eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT-----PRISWRRENNAILP-TGGSIY-------RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~~-~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+..+.+.+|+++.|.|.+.+.|. +.+.|++++..... ..+... ....|.|.+++.+|+|.|+|.+.+
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 88 (202)
T 3bp6_B 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC 88 (202)
T ss_dssp CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence 34567889999999999988775 78999994433322 222211 236899999999999999999999
Q ss_pred CCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 209 GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 209 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
..+. ....+.|.|..++..... ....+..|+.+.|.|.+.|+|.|.+.|++++.. +.. .. .........
T Consensus 89 ~~~~-~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~--~~~--~~-----~~~~~~~~~ 157 (202)
T 3bp6_B 89 GAAW-DYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVP--ANT--SH-----IRTPEGLYQ 157 (202)
T ss_dssp TTEE-EEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSC--CEE--EE-----EECTTSCEE
T ss_pred CCCc-ceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCceEEEEeCCCC--ccC--ce-----eeCCCCCEE
Confidence 8775 467778888765321100 012346799999999999999999999998765 211 00 011111245
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.+.+.++..+|.|.|+|.|.|..|....++.|.|...
T Consensus 158 ~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~ 194 (202)
T 3bp6_B 158 VTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194 (202)
T ss_dssp EEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC---
T ss_pred EEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCc
Confidence 6778899999999999999999999999988877543
No 162
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.91 E-value=9.4e-23 Score=162.92 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=123.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|. ..+.+|++|+|.|.+.+.+. .+.|+|++..+... ...... ......|.|.+
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-------------~~~~~~----~~~~~~L~i~~ 64 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWI-------------TRIPQE----LVKKGQFPIPS 64 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHH-------------HTSCHH----HHTTTEEEESS
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccc-------------cccccc----CCcccEEEECC
Confidence 4688888776 47899999999999987665 69999988654210 000000 01123899999
Q ss_pred cCCCCCeEEEEEeEEcc-c-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGI-N-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~-~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
++.+|+|.|+|.+.+.. + ...+..+.|.|.. +|.+.... ...+.+|+.++|.|.+.+. .+.+.|+|++..+.
T Consensus 65 v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~ 141 (198)
T 1ugn_A 65 ITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEH 141 (198)
T ss_dssp CCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES--CSEEETTCCEEEEEECSSC-CSEEEEEEC-----
T ss_pred CCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC--ccccCCCCcEEEEEecCCC-CcEEEEEECCCccC
Confidence 99999999999998865 3 2345667788876 34443322 2468899999999999887 78999999998764
Q ss_pred CCCce---EE---eeeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEE
Q psy8823 178 PTGGS---IY---RGSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVE 223 (386)
Q Consensus 178 ~~~~~---~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~ 223 (386)
..... .. ....|.|.+++.+|+|.|+|.+.|..... .+..+.|.|.
T Consensus 142 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 142 PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp -CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 33221 11 24789999999999999999999976532 2456666653
No 163
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.91 E-value=1e-22 Score=164.58 Aligned_cols=170 Identities=21% Similarity=0.327 Sum_probs=126.3
Q ss_pred ecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 37 DIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
-.|+.+.|.|.+.+. +.+.+.|++++..+.. +.++..... ....+|.|.+++.+|+|.|+|.+
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~--------------~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~ 78 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--------------SDRVKTGVT--GEQIWLQINEPTPNDKGKYVMEL 78 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCC--------------CSSEEEEEE--TTEEEEEEESCCGGGCEEEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccC--------------CCeEEEEEe--CCEEEEEECCCCcccCEEEEEEE
Confidence 367888888888764 5788999998865421 122322221 23457999999999999999999
Q ss_pred EEcccceeeeEEEEEEec--------------------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 116 IIGINNKISAEVDLQVRR--------------------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
.+..+ .....+.|.|.. .|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus 79 ~n~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~ 157 (212)
T 2r15_A 79 FDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157 (212)
T ss_dssp ECSSC-EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred ecCCc-ceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE
Confidence 97543 334555555432 343444445667889999999999999999999999999998
Q ss_pred eCCCCceEEee-----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 176 ILPTGGSIYRG-----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 176 ~~~~~~~~~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
+.......... ..|.|.+++.+|.|.|+|.+.|..+. ....+.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~ 210 (212)
T 2r15_A 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFI 210 (212)
T ss_dssp ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEc
Confidence 87665544332 38999999999999999999999887 56677777753
No 164
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.90 E-value=7.7e-23 Score=169.15 Aligned_cols=221 Identities=17% Similarity=0.146 Sum_probs=128.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++|+|.|.+. .+...+.|+|++..+.... ... .......+..|.|.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~-~~~~~~~W~k~g~~~~~~~-----------~~~----~~~~~~~~~~L~I~ 67 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLH-----------LIG----EHHDGVSKANFSIG 67 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEES-SCCSEEEEEEESTTCEEEE-----------EEC----BCCTTCEEEEEEEC
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecC-CCCcEEEEEECCCCCCcce-----------eee----eccCCCceEEEEee
Confidence 35678877765 6688999999999987 4567799999886541100 000 01122345689999
Q ss_pred ccCCCCCeEEEEEeEEccc----ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGIN----NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+... ...+..+.|.|.. +|.+...+. ..+.+|++++|.|.+.+. ++.+.|+|+|.
T Consensus 68 ~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~--~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~ 144 (257)
T 1b6u_A 68 PMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG--PTVLAGESVTLSCSSRSS-YDMYHLSREGE 144 (257)
T ss_dssp SCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC--TTCBTTCEEEEEEECSSC-CSEEEEEETTS
T ss_pred cCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC--CccCCCCEEEEEEeCCCC-CcEEEEEECCc
Confidence 9999999999999975321 2346667788864 344443322 247899999999999765 46899999997
Q ss_pred eeCCCCceE-----EeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEEEecceEeeCCC-cccccCCCcEE
Q psy8823 175 AILPTGGSI-----YRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEVEFAPVITVPKP-RLGQALQYDMD 244 (386)
Q Consensus 175 ~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~ 244 (386)
.+....... .....|.|.+++ |+|.|+|.+.+... ...+..+.|.|..+|.+..+.+ ......|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~ 222 (257)
T 1b6u_A 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRH 222 (257)
T ss_dssp SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------
T ss_pred ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEE
Confidence 654322111 125679999998 99999999987532 2346778899998887653333 23455688899
Q ss_pred EEEEEEecCCCeeEEEeCCee
Q psy8823 245 LECHVEAYPPPAIVWIKEDTQ 265 (386)
Q Consensus 245 l~C~~~g~p~~~~~W~~~~~~ 265 (386)
|.|.+ |.+.+.+.|...+-.
T Consensus 223 l~~~~-~~~~~~~~~~~~~~~ 242 (257)
T 1b6u_A 223 LHAAA-EQKLISEEDLNLDLV 242 (257)
T ss_dssp ---------------------
T ss_pred EEEEE-cchHHHHHHhhhhhc
Confidence 99887 777788999765543
No 165
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.90 E-value=9.1e-23 Score=162.72 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=122.6
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCC-CceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +.+.+.|+|++..+....... .....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence 6889999999999988 678999999998764321111 2356899999999999999999999876 2345677777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+. ..+.+|+.++|.|.+.+. ++.+.|++++.. +......... ........|.|.+++.+
T Consensus 94 V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~--~~~~~~~~~~----~~~~~~~~L~i~~v~~~ 165 (196)
T 3p2t_A 94 MTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAA--HPLLCLRSEH----GAQQHQAEFPMSPVTSV 165 (196)
T ss_dssp EECSSCCCEEEEESC-SEECTTCCEEEEEEEEEE-EEEEEEEETTCC--CGGGSEEEEE----EEEEEEEEEEECSCCGG
T ss_pred ecCCCCCCEEEeCCc-ceecCCCeEEEEEecCCC-CCEEEEEeCCCc--ccceeecccc----cccCcceEEEeCCCccc
Confidence 764 345554433 367889999999999874 458999999876 3222111100 01124678999999999
Q ss_pred CCeEEEEEEEcCCC-----ceeeEEEEEE
Q psy8823 299 QYGSYICRAANKLG-----TSEKTVELFE 322 (386)
Q Consensus 299 d~G~Y~C~a~n~~g-----~~~~~~~l~v 322 (386)
|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 166 d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 166 HGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp GCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred CCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 99999999999986 2334556655
No 166
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.90 E-value=5.8e-23 Score=160.68 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=123.6
Q ss_pred eEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...+.+|+.++|.|.+.+.|.+. +.|++++..+.. ....|.|.+++.+|+|.|+|.+.|... +..+.+.|
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V 86 (175)
T 1fnl_A 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEV 86 (175)
T ss_dssp CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEE
T ss_pred ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEE
Confidence 34688999999999998888765 899999987653 345799999999999999999998544 45677788
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..++..... ....+.+|+.+.|.|.+.+.+++ .+.|++++.. +... .....|.|.++..+|+|
T Consensus 87 ~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~--~~~~-------------~~~~~L~i~~v~~~d~G 150 (175)
T 1fnl_A 87 HIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKD--RKYF-------------HHNSDFHIPKATLKDSG 150 (175)
T ss_dssp ECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEE--EEEE-------------EECCCEEESSCCGGGCE
T ss_pred eCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeE--ccCC-------------CCCCEEEEcccChhhCe
Confidence 766654443 44667789999999999988766 9999999987 3110 13577999999999999
Q ss_pred EEEEEEEcCCCc-eeeEEEEEEEe
Q psy8823 302 SYICRAANKLGT-SEKTVELFESI 324 (386)
Q Consensus 302 ~Y~C~a~n~~g~-~~~~~~l~v~~ 324 (386)
.|+|.|.|..|. .+..+.|.|.+
T Consensus 151 ~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 151 SYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEEEEcCCCCccCccEEEEEeC
Confidence 999999997664 45577777753
No 167
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.90 E-value=4.9e-23 Score=166.50 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=121.8
Q ss_pred ccceeeecC--CcEEEEEEEeeCCCCcEEEEec--CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 31 SQEQIKDIG--GTVELKCSVQYAQDYPVIWMKV--DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 31 ~~~~~v~~G--~~v~L~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+....+.+| ++++|.|.+.+ |.+.+.|+++ +.... . .+.++.... ...|.|.+++.+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~------~-------~~~~~~~~~-----~~~l~I~~v~~~ 74 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFV------P-------DGNRISWDS-----KKGFTIPSYMIS 74 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEEC------C-------CSSSCEEET-----TTEEEEEGGGTT
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccc------c-------CCCcccccC-----CccEEEccCChh
Confidence 456678899 99999999975 6688999985 22210 0 011111111 126999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCeeeCCCCc-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNAILPTGG- 181 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~- 181 (386)
|+|.|+|.+.+......+..+.|.|.. +|.+.......+.+.+|++++|.|.+.+.| .+.+.|++++..+.....
T Consensus 75 D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~ 154 (213)
T 2x1w_L 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 154 (213)
T ss_dssp TCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEE
T ss_pred cCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEe
Confidence 999999999875444444456777754 233333344455789999999999998855 357999998876432111
Q ss_pred --e---------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 182 --S---------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 182 --~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
. ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEC----
T ss_pred ccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCc-EEEEEEEEEeccccc
Confidence 0 223457999999999999999999999887 578889999887754
No 168
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.90 E-value=2.1e-23 Score=163.39 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=126.0
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|.+... +....+.+|++++|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 4 ~P~i~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~- 75 (176)
T 1f2q_A 4 KPKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE- 75 (176)
T ss_dssp CCCCEEE-SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC-
T ss_pred CCEEEcC-CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc-
Confidence 3444433 333568899999999999887765 6999999987653 256799999999999999999988554
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
+..+.+.|..++..... ....+.+|+.+.|.|.+. +.|.+.+.|++++.. +... .....|.
T Consensus 76 --s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~--~~~~-------------~~~~~L~ 137 (176)
T 1f2q_A 76 --SEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA--LKYW-------------YENHNIS 137 (176)
T ss_dssp --CCCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEE--CCSC-------------CCSSEEE
T ss_pred --cccEEEEEeCcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEE--Eeee-------------cCCCeEE
Confidence 34567777755544433 345677999999999995 556669999999987 3111 1356899
Q ss_pred EeecccCCCeEEEEEEEcCCC-ceeeEEEEEEEecCC
Q psy8823 292 VITIEKRQYGSYICRAANKLG-TSEKTVELFESIIPV 327 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~p~ 327 (386)
|.++..+|+|.|+|.|.|..+ ..+..+.|.|...|.
T Consensus 138 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred ECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999999999999999754 445668888887664
No 169
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=164.57 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=107.8
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+.+. .+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence 6889999999999987665 9999999986643211 11235689999999999999999999876532 34567788
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|++++.. +....... ...........|.|.+++.+
T Consensus 94 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~--~~~~~~~~---~~~~~~~~~~~L~I~~v~~~ 166 (196)
T 2d3v_A 94 VTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDH--KLSWTLDS---QLTPSGQFQALFPVGPVTPS 166 (196)
T ss_dssp EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC-----CCEEEEEC---EECTTSCEEEEEECCCCBTT
T ss_pred ecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCc--cccccccc---ccccCCCceeEEEeeecCcc
Confidence 876 45555443 35678999999999999988 89999999876 22111000 00111123578999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|+|.|.|..+
T Consensus 167 D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 167 HRWMLRCYGSRRHI 180 (196)
T ss_dssp BCEEEEEEEEETTE
T ss_pred cCeeEEEEEEccCC
Confidence 99999999999865
No 170
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=163.93 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=120.7
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+.. .+.+|++|+|.|.+.+ +.+.+.|+|++... . ..+..|.|
T Consensus 5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~---------------------~-----~~~~~L~i 56 (184)
T 2gi7_A 5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR---------------------Y-----QDQAVLFI 56 (184)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC---------------------E-----ESSSEEEE
T ss_pred CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc---------------------c-----CcccEEEE
Confidence 3457888888775 7899999999999876 67789999987530 0 11238999
Q ss_pred cccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeee
Q psy8823 101 KDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI 176 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~ 176 (386)
.+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.+ +.+.|+|++..+
T Consensus 57 ~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~ 133 (184)
T 2gi7_A 57 PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPA 133 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC--CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCT
T ss_pred CcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC--CceecCCCcEEEEEEcCCCC-cEEEEEECCCcC
Confidence 99999999999999988654 2345567777743 34443322 22467899999999987654 689999999876
Q ss_pred CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 177 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
............|.|.+++.+|+|.|+|.+.|...
T Consensus 134 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred cceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 55333334567899999999999999999999754
No 171
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.90 E-value=8.1e-23 Score=163.72 Aligned_cols=176 Identities=28% Similarity=0.377 Sum_probs=127.8
Q ss_pred eccceeeecCCcEEEEEE-EeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCS-VQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
.+....+.+|+.+.|.|. +.+.+. +.+.|++++..+.. . .+.+..... .+.+|.|.+++.+|
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~-----~-------~~~~~~~~~----~~~~L~i~~v~~~d 77 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI-----T-------MDKRRFVSQ----TNGNLYIANVEASD 77 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC-----C-------CSSSEEECT----TTCCEEESSCCGGG
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee-----e-------eCCCeEEEc----CCCeEEECcCCccc
Confidence 346677999999999999 777777 89999998865421 0 011111111 12379999999999
Q ss_pred CeEEEEEeEEcccceee--eEEEEEEe-------cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 108 AGYYRCQVIIGINNKIS--AEVDLQVR-------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+|.|+|.+.+..+.... ..+.+.+. .+|.+.... ....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 78 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~ 156 (201)
T 3s97_C 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF-KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS 156 (201)
T ss_dssp CEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEEC-CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT
T ss_pred CeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecC-CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC
Confidence 99999999986543322 33344432 123333322 256788999999999999999999999999987665
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.......+..|.|.++..+|+|.|+|.+.|..+. ....+.|.|+
T Consensus 157 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 200 (201)
T 3s97_C 157 TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK-DKHQARIYVQ 200 (201)
T ss_dssp TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred ceeecCCCCEEEEccCChhhCEEEEEEEEecCCc-eeeeEEEEEe
Confidence 4333345678999999999999999999998887 4566777664
No 172
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.90 E-value=8.7e-24 Score=179.51 Aligned_cols=223 Identities=15% Similarity=0.214 Sum_probs=144.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCcee--e
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTR--R 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~ 216 (386)
...+.+.+|++++|.|.+.+. ++|++++..+....... .....|.|.+++.+|+|.|+|.+.|..+.... .
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 82 (289)
T 3mjg_X 7 GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82 (289)
T ss_dssp CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCE
T ss_pred CCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEE
Confidence 345678899999999998764 99999998763111100 12468999999999999999999997765322 3
Q ss_pred eEEEEEEecceEeeCCC-c---ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 217 NIAVEVEFAPVITVPKP-R---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 217 ~~~l~v~~~p~~~~~~~-~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
.+.+.|..+........ . ..+.+|+.+.|.|.+. .|.+.+.|++++....+. ..+. . ....+
T Consensus 83 ~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~--~~~~------~---~~~~~-- 148 (289)
T 3mjg_X 83 RLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP--VPYD------H---QRGFS-- 148 (289)
T ss_dssp EEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC--CCEE------T---TTEEE--
T ss_pred eEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc--eeec------C---CcCee--
Confidence 34444432222221111 1 4578899999999997 778889998875331121 1100 0 01111
Q ss_pred eecccCCCeEEEEEEEcCCCceee-EEEEEEEec--CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeec
Q psy8823 293 ITIEKRQYGSYICRAANKLGTSEK-TVELFESII--PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~--p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~ 366 (386)
...|+|.|+|.|.|..+.... .+.|.|... |.....+....+..|+.++|.|.+.+.| ++|+++++.....
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~ 225 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCC
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCc
Confidence 357999999999988776543 455666542 2211122446688999999999998888 6999776643221
Q ss_pred -------------ccceeeeeeeeecccccCC
Q psy8823 367 -------------SLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 -------------~~~~~~~i~~v~~~d~~~~ 385 (386)
.....|.|..|+.+|++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 257 (289)
T 3mjg_X 226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257 (289)
T ss_dssp CCCEEEESCTTTTEEEEEEEESSCCSSCCEEE
T ss_pred ccccccccCCcceEEEEEEEEcccChhhCcEE
Confidence 1123799999999999865
No 173
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=167.57 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=129.9
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCcccccccccc-CCceeEEe---ccceeeec-CCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPIS-TGSSLIIR---DSRFAIRY-DTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-~~~~~~~~L~i~~ 102 (386)
|+...+.+|++++|.|.+.+.+.+ .|.|+|++........... ........ ..++.... .....+++|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 445668899999999999877654 3899998876543322211 11111111 12222211 2234566899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
++.+|+|.|+|.+.+...........+.+..++...........+..|+.+.+.|.+.+.|++.++|++++..+......
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~ 165 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF 165 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence 99999999999998766555555555666555443333344456677899999999999999999999998776433221
Q ss_pred -----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 183 -----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 183 -----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.|.|.++..+|+|.|+|.|.|..+.. ...+.+.|
T Consensus 166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v 209 (218)
T 4frw_A 166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL 209 (218)
T ss_dssp ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence 1234579999999999999999999988763 33344433
No 174
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.90 E-value=2.3e-23 Score=174.90 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=128.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEe---eCCCCcEEEEecCCccccccccccCCceeEEe----ccceeeecCCCcceEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQ---YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR----DSRFAIRYDTASSTYT 97 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 97 (386)
+.+.+.+....+.+|++++|.|.+. +.+.+.+.|++++................... ..++.+..+....+++
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4566777778899999999999987 55667799999765443221111111111111 1344443344456679
Q ss_pred EEEcccCCCCCeEEEEEeEEcccc-eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe---eeeCCCeEEEEEcC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA---GGHPTPRISWRREN 173 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~---~~~~~~~v~W~~~~ 173 (386)
|.|.+++.+|+|.|+|.+.+.... .....+.|.|.. ..+....+.+|+.++|.|.+ .+.|.+.+.|++++
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~ 159 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence 999999999999999999976433 345556666641 12346678999999999999 56688999999953
Q ss_pred eeeCCCC----------------------ce------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE-Ee
Q psy8823 174 NAILPTG----------------------GS------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EF 224 (386)
Q Consensus 174 ~~~~~~~----------------------~~------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v-~~ 224 (386)
....... .. ......|.|.+++.+|+|.|+|.+.|..+. ....+.|.| ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~ 238 (268)
T 3mj6_A 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQD 238 (268)
T ss_dssp TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce-EEEEEEEEEEcC
Confidence 3211000 00 123568999999999999999999997775 667778887 34
Q ss_pred cceEeeCCCcccccCCCc
Q psy8823 225 APVITVPKPRLGQALQYD 242 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~ 242 (386)
+|.+...+....+..|+.
T Consensus 239 ~p~~~~~p~~~~~~~~q~ 256 (268)
T 3mj6_A 239 EFQRTISPTPPTDKGQQG 256 (268)
T ss_dssp ------------------
T ss_pred CCeeeeCCCCCCCCccee
Confidence 555555555555544443
No 175
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.90 E-value=4.6e-23 Score=166.79 Aligned_cols=183 Identities=21% Similarity=0.310 Sum_probs=128.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE--EEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY--TLL 99 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~ 99 (386)
..+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+... ..... ...... +|.
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~-------------~~~~~----~~~~~~~~~L~ 67 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE-------------IGRRL----KFWNETDPEFV 67 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEE-------------CSEEC----C----CCCEEE
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccc-------------ccccC----CCCcceeeEEE
Confidence 45788888776 57899999999999875 56789999987654110 00000 011223 799
Q ss_pred EcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
|.+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|...+.+.+.+.|+|+|..
T Consensus 68 I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~ 145 (218)
T 1uct_A 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSSAHIPFDRFSLAKEGEL 145 (218)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS--CSEECTTCCCEEEEECSSSCCSEEEEEETTCS
T ss_pred EcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC--CCccCCCCCEEEEEeCCCCCCCEEEEEECCCc
Confidence 999999999999999998643 3345667777764 44444332 23678999999999766677789999999987
Q ss_pred eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEEEec
Q psy8823 176 ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEVEFA 225 (386)
Q Consensus 176 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~~ 225 (386)
+............|.|.+++.+|+|.|+|.+.|... ...+..+.|.|...
T Consensus 146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 146 SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp SCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred ccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 654211122356899999999999999999998532 22456677777543
No 176
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.90 E-value=1.1e-22 Score=164.01 Aligned_cols=171 Identities=19% Similarity=0.305 Sum_probs=126.8
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC-------------------Cc-eEEeeeEEEECCCCCCCCeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT-------------------GG-SIYRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-------------------~~-~~~~~~~l~i~~~~~~d~g~y~C 204 (386)
..+.+|++++|.|...+.+.+.+.|++++...... .. ....+..|.|.+++.+|+|.|+|
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C 88 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (208)
T ss_dssp SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence 35789999999999888888899999875422110 00 01123579999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee
Q psy8823 205 VAENGVGKGTRRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 281 (386)
.+.+..+......+.|.|..+ |.+...... +..|+.+.|.|.+.+.| |.+.|++++.. +....++....
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~--l~~~~~~~~~~--- 160 (208)
T 3r4d_A 89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQS--LQLTERMTLSQ--- 160 (208)
T ss_dssp EEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEE--CCCCSSEEEET---
T ss_pred EEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEe--CCCCCCeEEcC---
Confidence 999986554667778888765 444444333 88899999999998866 79999999988 54444443321
Q ss_pred cCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCC
Q psy8823 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPV 327 (386)
Q Consensus 282 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~ 327 (386)
.+..|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.
T Consensus 161 ----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 161 ----NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp ----TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred ----CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 2367999999999999999999999998764 67777765554
No 177
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.90 E-value=6e-23 Score=162.06 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=125.3
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC--------------CCceEE-------eeeEEEECCCCCCCCeE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--------------TGGSIY-------RGSILKIPQITKEDRGT 201 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~-------~~~~l~i~~~~~~d~g~ 201 (386)
..+.+.+|++++|.|.+.+.|.+.+.|++++..... ...... ....|.|.+++.+|+|.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 345788999999999999888899999998863211 011111 13459999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 281 (386)
|+|.+.+..+ .+.+.|... .. +....+.+|+.++|.|.+.+.|.+.+.|++++.. +.
T Consensus 83 Y~C~~~~~~~-----~~~l~V~~~---~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~--~~------------ 139 (184)
T 2ny1_B 83 YICEVEDQKE-----EVQLLVFGL---TA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK--NI------------ 139 (184)
T ss_dssp EEEEETTEEE-----EEEEEEEEE---EE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSC--EE------------
T ss_pred EEEEEEcCCC-----cEEEEEEEe---cC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCc--cc------------
Confidence 9999987532 455666542 22 3345678999999999999999999999999866 20
Q ss_pred cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 282 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.....|.|.++..+|+|.|+|.|.|..+..+.++.|.|...|.
T Consensus 140 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 140 ---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp ---EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred ---cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 1467899999999999999999999999999999999988775
No 178
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.90 E-value=3.5e-23 Score=172.02 Aligned_cols=188 Identities=15% Similarity=0.241 Sum_probs=122.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
...+.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+............+|+.... ..+++
T Consensus 32 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~ 109 (252)
T 3bkj_L 32 SSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDF 109 (252)
T ss_dssp --CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEE
T ss_pred ccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEE
Confidence 3455677767888899999999999998776 5789999976332111111111100000123444432 34567
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+|.|.+++.+|+|.|+|.+.+...........|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |++ .++|++
T Consensus 110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k 188 (252)
T 3bkj_L 110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKI 188 (252)
T ss_dssp EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence 9999999999999999999865433333345677754 34443322211 12368899999999885 443 799999
Q ss_pred cCeeeCCC-C----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT-G----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~-~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+... . ........|.|.++..+|+|.|+|.+.|....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 99876543 0 11122356999999999999999999997654
No 179
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.90 E-value=2.5e-24 Score=176.82 Aligned_cols=187 Identities=15% Similarity=0.238 Sum_probs=102.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
...+.+...|....+.+|++|+|.|.+.+.+.+.+.|+|++.......+.............++.... ..++++|.|.
T Consensus 21 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 98 (233)
T 3bqu_C 21 GAETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIE 98 (233)
T ss_dssp --CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC--
T ss_pred ccceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEEC
Confidence 34556666678888999999999999988777789999975432111111111000000122333221 3345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAI 176 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~ 176 (386)
+++.+|+|.|+|.+.+..+........|.|.. +|.+....+.. ...+|+.++|.|.+.+.+++ .++|+++|..+
T Consensus 99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 177 (233)
T ss_dssp ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence 99999999999999865433333334566654 44443322211 12368999999999886443 79999998876
Q ss_pred CCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 177 LPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 177 ~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
... +........|.|.+...+|+|.|+|.+.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 443 11112345789999999999999999998654
No 180
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.90 E-value=9.6e-23 Score=169.21 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=128.5
Q ss_pred eeeeccceeeecCCcEEEEEEEee---CCCCcEEEEecCCcccccccccc-----------CC-ceeE----Eeccceee
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPIS-----------TG-SSLI----IRDSRFAI 87 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~-----------~~-~~~~----~~~~~~~~ 87 (386)
+...+....+.+|++++|.|.+.+ .+.+.+.|++++.......+... .+ .... ...+|..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 334445677999999999999987 67778999998744210000000 00 0000 01122222
Q ss_pred ecCCCcceEEEEEcccCCCCCeEEEEEeEEcccce----eeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEee
Q psy8823 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAG 160 (386)
Q Consensus 88 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~ 160 (386)
.. .++.+|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+ |.+....+....+.+|+.+.|.|.+.
T Consensus 85 ~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~ 161 (250)
T 2fbo_J 85 AN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161 (250)
T ss_dssp SC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEE
T ss_pred cc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEec
Confidence 21 134589999999999999999999754422 255788888764 34444445566777899999999999
Q ss_pred eeCCCeEEEEEcCeeeCCCC-----------------------c-eEE-eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 161 GHPTPRISWRRENNAILPTG-----------------------G-SIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 161 ~~~~~~v~W~~~~~~~~~~~-----------------------~-~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+.|.+.++|++++..+.... . ... ....|.|.+++.+|+|.|+|.|.|..+....
T Consensus 162 g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~ 241 (250)
T 2fbo_J 162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241 (250)
T ss_dssp SCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGE
T ss_pred CCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCc
Confidence 99999999999987664321 1 111 2368999999999999999999997765433
Q ss_pred eeEE
Q psy8823 216 RNIA 219 (386)
Q Consensus 216 ~~~~ 219 (386)
....
T Consensus 242 ~~~~ 245 (250)
T 2fbo_J 242 DRSS 245 (250)
T ss_dssp EEEE
T ss_pred ccee
Confidence 3333
No 181
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.90 E-value=7.7e-23 Score=161.31 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=113.9
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~ 224 (386)
.+.+|++++|.|.+.+ +.+.+.|+|++.. .......|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG 90 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence 6889999999999987 7789999999875 2234568999999999999999999997653 234567777743
Q ss_pred ---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 ---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|++++.. +..... .......|.|.+++.+|+|
T Consensus 91 ~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~--~~~~~~---------~~~~~~~L~i~~v~~~D~G 157 (184)
T 2gi7_A 91 VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDP--APYKNP---------ERWYRASFPIITVTAAHSG 157 (184)
T ss_dssp SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCC--TTSCCC---------CEEEEESSSEEEETTCCSE
T ss_pred cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCc--Ccceec---------CCCceEEEEEccCCccCCe
Confidence 45555444 4567799999999998655 469999999876 322111 1124677999999999999
Q ss_pred EEEEEEEcCCC
Q psy8823 302 SYICRAANKLG 312 (386)
Q Consensus 302 ~Y~C~a~n~~g 312 (386)
.|+|.|.|..+
T Consensus 158 ~Y~C~a~n~~~ 168 (184)
T 2gi7_A 158 TYRCYSFSSRD 168 (184)
T ss_dssp EEEEEEECTTS
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 182
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.90 E-value=2e-23 Score=168.33 Aligned_cols=191 Identities=19% Similarity=0.244 Sum_probs=137.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+..+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ...+........++.... .+|.|.++
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~------~~L~i~~~ 75 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV--CYNNKITASYEDRVTFLP------TGITFKSV 75 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEES--EETTEECTTTTTTCEEET------TEEECSCC
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEE--EecCccCccccCceEeec------cEEEEeeC
Confidence 4567777778889999999999999988888999999876531100 000000000112222221 48999999
Q ss_pred CCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 104 QETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+.+|+|.|+|.+.+..+ ...+..+.|.|..+|....... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~ 154 (209)
T 1nbq_A 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154 (209)
T ss_dssp CTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC-BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred CHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc-ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence 99999999999998653 3446677888888886655433 3458899999999997 8999999999999987754332
Q ss_pred e-----------EEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEE
Q psy8823 182 S-----------IYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVE 223 (386)
Q Consensus 182 ~-----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~ 223 (386)
. ......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp SSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred cceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 1 1135689999999999999999999998874 3455555553
No 183
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.90 E-value=1.1e-22 Score=166.22 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=115.2
Q ss_pred ceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeC-----------CC------CceE-------EeeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAIL-----------PT------GGSI-------YRGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~-----------~~------~~~~-------~~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+.+ .+.|+|++.... .. .+.. .....|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 45678899999999999765543 699999764211 00 0000 124579999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCcee
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
.+|+|.|+|.+.|..+. .. ..+.+...+..........+..|+.+.|.|.+.| .|.|.++|++++.. .......
T Consensus 92 ~~D~G~Y~C~a~n~~~~-~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~--~~~~~~~ 166 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFY-EK--ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE--NIPTVEA 166 (226)
T ss_dssp GGGCEEEEEEEEETTEE-EE--EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC--BCCCEEC
T ss_pred hHHCeeEEEEEECCCcE-EE--EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce--EcCCCce
Confidence 99999999999997665 23 3444444444333344456678999999999988 59999999997654 2111111
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.... ........+.+.+++.+|+|.|+|.|.|..|..++++.|.|.+
T Consensus 167 ~~~~---~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 167 PVVA---DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp CCEE---CTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred EEEE---CCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 1111 1111123455667788999999999999999999999988754
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.90 E-value=8.7e-23 Score=177.79 Aligned_cols=179 Identities=17% Similarity=0.246 Sum_probs=139.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++...... ..+ .....+.+|.|.+
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~-------------~~~-----~~~~~~~~L~i~~ 218 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-------------VMK-----SGGLPSLGLTLAN 218 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-------------ECC-----CCCSSEEEEEEES
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecc-------------ccc-----ceecccceEEEee
Confidence 4788888888888999999999999998899999999988653110 000 1223456899999
Q ss_pred cCCCCCe-EEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+| .|+|.+.+..+. .+..+.|.|..+|.+.. ....+|+.++|.|.+.|.|.+.++|++++..+.....
T Consensus 219 v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~ 292 (347)
T 2ifg_A 219 VTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF 292 (347)
T ss_dssp CCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEEEE-----CCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSS
T ss_pred CChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCeeee-----ccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcc
Confidence 9999999 999999987543 36677788877776511 1235789999999999999999999999988765433
Q ss_pred eEE-----------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 182 SIY-----------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 182 ~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
... ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.+.|..+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P 347 (347)
T 2ifg_A 293 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347 (347)
T ss_dssp EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence 221 2567999999999999999999999887 5677777776554
No 185
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.90 E-value=8e-23 Score=163.93 Aligned_cols=180 Identities=19% Similarity=0.265 Sum_probs=122.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCC-----CcEEEEecCCccccccccccCCceeEEeccceeeecC-CCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQD-----YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i 100 (386)
+...+....+.+|+++.|.|.+.+.+. +.+.|++.+.... ...+++.+..+ ...++.+|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~-------------~~~~r~~~~~~~~~~~~~~L~I 71 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS-------------LQSERATLLEEQLPLGKALFHI 71 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CC-------------CBCSSCEECGGGGGGTEEEEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccc-------------ccCCceEEeeccccCCeeEEEE
Confidence 334445677999999999999987765 6799999443221 11222222211 1235679999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+++.+|+|.|+|.+.+..+. .+..+.|.|..++..+.. ....+.+|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus 72 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~p~~--~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~ 148 (202)
T 3bp6_B 72 PSVQVRDSGQYRCLVICGAAW-DYKYLTVKVKASYMRIDT--RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSH 148 (202)
T ss_dssp CSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCCCEEE--EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEE
T ss_pred CCCCHHHCcEEEEEEEeCCCc-ceEEEEEEecCCCCcccE--EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCce
Confidence 999999999999999876543 377788888776422211 11234679999999999999999999999876542111
Q ss_pred ceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 181 GSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 181 ~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.... ....+.+.++..+|.|.|+|.+.|..+. ....+.+.|.
T Consensus 149 ~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~v~ 192 (202)
T 3bp6_B 149 IRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMK-ELTSAIIDPL 192 (202)
T ss_dssp EECTTSCEEEEEEEEECCCTTCCEEEEEEETTTT-EEEEEEECC-
T ss_pred eeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcc-cccEEEEEec
Confidence 0000 1234667788899999999999999887 4555566553
No 186
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.90 E-value=8.9e-23 Score=165.13 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=122.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++++|.|.+.+.+.+.|.|+|++.......+.............++.... ...+++|.|.+++.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE 81 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChh
Confidence 445567778999999999999998887889999965432111111111000000123444432 335669999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCeeeCCC-C
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENNAILPT-G 180 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~-~ 180 (386)
|+|.|+|.+.+..+........|.|.. +|.+....+... ...|+.++|.|.+.+ .|.+ .++|+++|..+... .
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 999999999876544334445677764 454443222211 236889999999987 5554 89999999887654 1
Q ss_pred ----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
........|.|.++..+|+|.|+|.|.|....
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 11122458999999999999999999997654
No 187
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.89 E-value=1.1e-22 Score=164.56 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=125.6
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce---EEeee--EEEECCCCCCCCeEEEEEEec
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGS--ILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~--~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ..... .|.|.+++.+|+|.|+|.+.|
T Consensus 9 ~P~i~~~p~--~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 9 MPFISAKSS--PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCEEESSC--SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCEEEecCC--CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 444444332 36889999999999976 67899999998765322111 12234 899999999999999999999
Q ss_pred CCCC-ceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCc
Q psy8823 209 GVGK-GTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284 (386)
Q Consensus 209 ~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (386)
..+. ..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|++++.. +.... . ..
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~--~~~~~--~-------~~ 153 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGEL--SLPQH--Q-------SG 153 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCS--SCCSE--E-------EC
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCc--ccccc--c-------CC
Confidence 7652 234567777765 45555444 45678999999999766777889999999976 32211 0 01
Q ss_pred eeeeEEEEeecccCCCeEEEEEEEcCCC-----ceeeEEEEEEEecC
Q psy8823 285 FTDTTIRVITIEKRQYGSYICRAANKLG-----TSEKTVELFESIIP 326 (386)
Q Consensus 285 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p 326 (386)
.....|.|.+++.+|+|.|+|.|.|... ..+..+.|.|.+.+
T Consensus 154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 154 EHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp SSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred CccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 2467899999999999999999998642 33456777777644
No 188
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.89 E-value=2.8e-22 Score=158.62 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=125.8
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+.. .... ......+.+|.|.+
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~-------------~~~~----~~~~~~~~~L~I~~ 63 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAV-------------DRPK----PPERINKVKFYIPD 63 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEE-------------ECCS----SCTTCCEEEEEESS
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccc-------------cccc----cCCCcceeEEEeCc
Confidence 46888888776 7899999999999864 4567999998754310 0000 01223456899999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+ +++.+.|+|++..+..
T Consensus 64 v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~ 140 (188)
T 1oll_A 64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV 140 (188)
T ss_dssp CCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES--CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE
T ss_pred CCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC--CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc
Confidence 999999999999987533 2335667777764 45444322 235789999999999866 4568999999876543
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC--CceeeeEEEEEE
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG--KGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~ 223 (386)
..........|.|.+++.+|+|.|+|.+.|... ...+..+.|.|.
T Consensus 141 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 141 QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 111112356899999999999999999987542 224556666653
No 189
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.89 E-value=1.6e-22 Score=163.69 Aligned_cols=180 Identities=18% Similarity=0.279 Sum_probs=123.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.+...+....+.+|++|+|.|.+.+.+.+.+.|+|+........+...........++++... ...++++|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~ 79 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGS--GSGTDFTLTISDLE 79 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEECSCC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEe--cCCCEEEEEECCCC
Confidence 4566667778899999999999999888889999996532211111111111101113455444 23466799999999
Q ss_pred CCCCeEEEEEeEEcccc--eeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCC
Q psy8823 105 ETDAGYYRCQVIIGINN--KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILP 178 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~ 178 (386)
.+|+|.|+|.+.+..+. .......|.|.. +|.+....+ ...+.+|+.++|.|.+.+ .|.+.++|++++..+..
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~-~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 80 CADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPP-SADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTT 158 (213)
T ss_dssp GGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECC-CHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCS
T ss_pred hHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCC-chhhccCCcEeEEEEEecccCCcEEEEEeCCccCCC
Confidence 99999999999875543 344455666643 343332221 112446999999999988 88899999999987754
Q ss_pred CC-----------ceEEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 179 TG-----------GSIYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 179 ~~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
.. ......+.|.|.++..+|+|.|+|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 159 GIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 21 222334679999999999999999999
No 190
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.89 E-value=1.3e-22 Score=164.16 Aligned_cols=174 Identities=18% Similarity=0.298 Sum_probs=126.8
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------------CCCceE----EeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------------PTGGSI----YRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
.+.+.+|++++|.|.+.+.+.+.+.|++.. .... ...+.. .....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 678899999999999998889999999832 1110 001111 1245799999999999999999
Q ss_pred EecCCC--CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeEEe
Q psy8823 206 AENGVG--KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYSIS 277 (386)
Q Consensus 206 ~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~ 277 (386)
+.+..+ ........|.|. .+|.+...+.......|+.++|.|.+.|. |+ +.+.|++++.. +.........
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~ 166 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTP--ITQGVKTTQP 166 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEECCC
T ss_pred eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcc--cCCCcccCCc
Confidence 999877 234566788887 67777766666666689999999999986 44 39999999987 4332111111
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus 167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 167 SKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp EEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 111112223567999999999999999999999987776654
No 191
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.89 E-value=3.4e-22 Score=168.75 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=126.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~ 99 (386)
+...|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+. .. .+..... .+.|+....+...+.++|.
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 34567788899999999999998764 5779999976332111111 00 0110000 1345655544445678999
Q ss_pred EcccCCCCCeEEEEEeEEccc---c-eeeeEEEEEEecCCe--------------eecCCCceEEEeCCccEEEEEEeee
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN---N-KISAEVDLQVRRPPV--------------ISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~---~-~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
|.+++.+|+|.|+|.+.+..+ . .....+.|.|..+|. .....+....+.+|++++|.|.+.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999987643 1 122345677776431 1122244567889999999999988
Q ss_pred eCCCeEEEEE--cCeeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 162 HPTPRISWRR--ENNAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 162 ~~~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.+ +.+.|+| ++..+. ...+... ....|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus 189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 88 8999999 444321 0111111 245799999999999999999987543323334455553
No 192
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.89 E-value=2.5e-22 Score=160.41 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=118.9
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCC-CC-ceeeeEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGV-GK-GTRRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~-~~~~~~~l 220 (386)
.+.+|++++|.|.+.+.+. .+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l 93 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 93 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence 6889999999999988765 7999999876632111 11235679999999999999999999976 42 23566788
Q ss_pred EEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecc
Q psy8823 221 EVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 221 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++.. +.... .+.. .........|.|.++.
T Consensus 94 ~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~--~~~~~~~~~~----~~~~~~~~~L~i~~v~ 165 (198)
T 1ugn_A 94 VVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGED--EHPQCLNSQP----HARGSSRAIFSVGPVS 165 (198)
T ss_dssp EEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC--------CEEEC----------CCEEEEEECCCC
T ss_pred EEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCc--cCCccccccc----cCCCcceeEEEecccC
Confidence 8877 45554433 3567899999999999888 779999999887 32111 1000 0011135789999999
Q ss_pred cCCCeEEEEEEEcCCCce-----eeEEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGTS-----EKTVELFES 323 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~ 323 (386)
.+|+|.|+|.|.|..+.. +..+.|.|.
T Consensus 166 ~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 166 PSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp TTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred cccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999999999999987621 345666554
No 193
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.89 E-value=1.7e-22 Score=162.99 Aligned_cols=179 Identities=14% Similarity=0.229 Sum_probs=119.1
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|....+.+|++|+|.|.+.+.+.+.+.|+++........+.............++.... ..++++|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 84 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAI 84 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeE
Confidence 67777999999999999988877889999965322111111111000000123444332 3456699999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCCC-C----
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILPT-G---- 180 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~-~---- 180 (386)
|+|.+.+..+........|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |++ .++|+++|..+... .
T Consensus 85 Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 163 (210)
T 1lk3_L 85 YFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT 163 (210)
T ss_dssp EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred EEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence 99999876543333445677764 44444322221 12368999999999874 443 89999999877544 1
Q ss_pred ------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
......+.|.|.++..+|+|.|+|.+.|....
T Consensus 164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 11122347999999999999999999997654
No 194
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.89 E-value=5.3e-22 Score=161.63 Aligned_cols=180 Identities=19% Similarity=0.314 Sum_probs=120.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCC-----CeEEEEEcCeeeC---------CC------CceEE-------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT-----PRISWRRENNAIL---------PT------GGSIY-------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~---------~~------~~~~~-------~~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+.|. ..+.|++++..+. .. .+... ....|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 87 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV 87 (222)
T ss_dssp CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence 45567889999999999877663 3799999753221 00 11111 1347999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
+.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+..|+.+.|.|.+.|+|.|.+.|++++... +......
T Consensus 88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~-~~~~~~~ 164 (222)
T 3sbw_C 88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV-LSGKTTT 164 (222)
T ss_dssp CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE-ECCEEEE
T ss_pred ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce-ecCccce
Confidence 99999999999998 333 55677888876554222111124568999999999999999999999984431 2222221
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
........ ......+..+..+|.|.|+|.|.|..|....++.|.|...|.
T Consensus 165 ~~~~~~~~---~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 165 TNSKREEK---LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp EECC-------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred EEEcCCCC---CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 11111111 112222334567899999999999999999999998875553
No 195
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.89 E-value=2.4e-22 Score=156.47 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=126.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+.+.+....+.+|++++|.|.+.+.+ ...+.|++++..+... ...+.|.
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------------------------~~~~~~~ 56 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------------------------TQPSYRF 56 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------------------------CSSEEEE
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------------------------ccceEEE
Confidence 457788888877899999999999998775 5689999987654210 1146778
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
+++.+|+|.|+|.+.+ ...+..+.|.|..++...... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 57 ~~~~~d~G~Y~C~~~~---~~~s~~~~l~v~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (170)
T 3ry4_A 57 KANNNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS- 130 (170)
T ss_dssp ECCGGGCEEEEEEETT---SBCCCCEEEEEECCSEEEECS--CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-
T ss_pred ecccccCeEEEEEEeC---CCceEeEEEEEECCceEecCC--CceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-
Confidence 9999999999999874 334556788888776554432 3457899999999999 45566899999998876421
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 131 ---HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp ---SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ---CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 235679999999999999999999988765566666665
No 196
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.89 E-value=3.9e-22 Score=161.31 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=123.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e----------C-C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I----------L-P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----------~-~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.|.+.+.|++++.. . . . ...... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence 4556788999999999999988889999985421 1 0 0 011111 1348999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEe-
Q psy8823 204 CVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSIS- 277 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~- 277 (386)
|.+.+..+........+.|.. +|.+...........|+.++|.|.+.| .|++ .+.|++++.. +.........
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 165 (213)
T 3d9a_L 88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTD 165 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEEEECC
T ss_pred EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc--CcceeeecCCC
Confidence 999997765334445666654 666666555444557899999999988 6665 8999999987 4443111111
Q ss_pred -eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 -HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 -~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..........
T Consensus 166 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3d9a_L 166 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS 208 (213)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEE
T ss_pred ccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEE
Confidence 111111223568999999999999999999999876544433
No 197
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=158.98 Aligned_cols=176 Identities=15% Similarity=0.276 Sum_probs=127.1
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCCCCc-------------------------eEEeeeEEEECC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILPTGG-------------------------SIYRGSILKIPQ 193 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~-------------------------~~~~~~~l~i~~ 193 (386)
+..+.+.+|++++|.|.+.+.+.+ .++|+|++........ ......+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 456788999999999999887765 4899998754321100 001134699999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
++.+|+|.|.|.+.+..+........+.+..++. .........+..|+.+.+.|.+.|.|+|.++|++++.. +....
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~--~~~~~ 163 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG--TTSSR 163 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC--EEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc--cccCc
Confidence 9999999999999886665444445555544443 33344556677889999999999999999999999877 33222
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
... ........+.|.|.++..+|+|.|+|.|.|+.|..+..+.+.|.
T Consensus 164 ~~~----~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 SFK----HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEE----CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred eEe----cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 211 11222346689999999999999999999999988776666553
No 198
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.89 E-value=1.9e-22 Score=167.38 Aligned_cols=180 Identities=14% Similarity=0.192 Sum_probs=123.5
Q ss_pred CceEEEeCCccEEEEEEeee---eCCCeEEEEEcCeeeC----C-------------------------CC-ceEEe---
Q psy8823 142 TRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAIL----P-------------------------TG-GSIYR--- 185 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~----~-------------------------~~-~~~~~--- 185 (386)
+..+.+.+|++++|.|.+.+ .+.+.+.|++++.... . .. +....
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 88 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA 88 (250)
T ss_dssp CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence 44667899999999999987 7788999999874320 0 00 00011
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEEec---ceEee-CCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVEFA---PVITV-PKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
...|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..+ |.+.. .+....+.+|+.+.|.|.+.|.|.|.+
T Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v 168 (250)
T 2fbo_J 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV 168 (250)
T ss_dssp SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence 2479999999999999999999876642 245777888764 33333 233456678999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEee-----------eeecCce---eeeEEEEeecccCCCeEEEEEEEcCC---CceeeEEEE
Q psy8823 258 VWIKEDTQQVLTNNQHYSISH-----------FATADEF---TDTTIRVITIEKRQYGSYICRAANKL---GTSEKTVEL 320 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l 320 (386)
.|++++..+............ ....... ....|.|.++..+|+|.|+|.|.|.. |....++.|
T Consensus 169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence 999998763221111110000 0000011 23689999999999999999999955 455556555
Q ss_pred E
Q psy8823 321 F 321 (386)
Q Consensus 321 ~ 321 (386)
.
T Consensus 249 ~ 249 (250)
T 2fbo_J 249 K 249 (250)
T ss_dssp E
T ss_pred e
Confidence 4
No 199
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.89 E-value=1.1e-21 Score=166.30 Aligned_cols=225 Identities=16% Similarity=0.235 Sum_probs=125.3
Q ss_pred CCcccchhHHHHHHHhhhcccccCCeeeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCc
Q psy8823 1 MESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGS 76 (386)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~ 76 (386)
|+...++++++++++.... ......+ ..+....+.+|++|+|.|.+.+.+ .+.+.|+|+........+. .. .+.
T Consensus 1 m~~~~~~~~ll~ll~~~~~-~~~~~~v-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~ 78 (291)
T 2gki_A 1 MKQSTIALALLPLLFTPVT-KAREVQL-QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYND 78 (291)
T ss_dssp -----------------------CCEE-EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTT
T ss_pred CceehhHHHHHHHHHhhcc-ccccEEE-EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCC
Confidence 5655444444433333222 2222333 346677899999999999998665 4679999975322111111 00 010
Q ss_pred eeEE---eccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccc----eeeeEEEEEEecC---------------
Q psy8823 77 SLII---RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRRP--------------- 134 (386)
Q Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~--------------- 134 (386)
.... ...|+....+...++++|.|.+++.+|+|.|+|.+.+...+ .....+.|.|..+
T Consensus 79 ~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~ 158 (291)
T 2gki_A 79 GTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGS 158 (291)
T ss_dssp EEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------
T ss_pred ccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCc
Confidence 0000 12455544433445779999999999999999999875311 1123456777651
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeeeCCC------eEEEEEcC--eee---CC---------CCceEE----eeeEEE
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP------RISWRREN--NAI---LP---------TGGSIY----RGSILK 190 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~------~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~ 190 (386)
+......+..+.+.+|++++|.|.+.+.+.+ .+.|+++. ... .. ..+... ....|.
T Consensus 159 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 238 (291)
T 2gki_A 159 DLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLT 238 (291)
T ss_dssp CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred cceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEE
Confidence 1222233456778999999999999887665 89999963 211 10 111111 134799
Q ss_pred ECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 191 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
|.+++.+|+|.|+|.+.+........-..|.|...+.
T Consensus 239 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~ 275 (291)
T 2gki_A 239 ISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHH 275 (291)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC--
T ss_pred ECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeEc
Confidence 9999999999999999985432222334555554443
No 200
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.89 E-value=5.9e-22 Score=166.80 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=120.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+.+...|....+.+|++|+|.|.+.+.+.+.+.|+|++.......+...........+.++.... ...+++|.|.+
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 88 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISS 88 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEcc
Confidence 3456777778888999999999999998888889999976432111111111100000133444432 34566899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe-------------eecCCCceEEEeCCccEEEEEEeeeeC--CCeE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV-------------ISDNSTRSLVVSEGQPVQLECFAGGHP--TPRI 167 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v 167 (386)
++.+|+|.|+|.+.+..+........|.|..+|. +....+....+.+|++++|.|.+.+.+ .+.+
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v 168 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWI 168 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEE
Confidence 9999999999999875433233345566655431 212223456788999999999998776 4789
Q ss_pred EEEEcC--eee---C--------------CCCceEEe------eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 168 SWRREN--NAI---L--------------PTGGSIYR------GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 168 ~W~~~~--~~~---~--------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.|++++ ... . ...+.... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 999964 111 0 01111111 237999999999999999999997
No 201
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.89 E-value=6.2e-22 Score=164.00 Aligned_cols=193 Identities=20% Similarity=0.270 Sum_probs=125.7
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCC--ceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTG--SSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+.+ .+.+.|+|+........+..... .... ....++.+..+...+.++|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 4567799999999999998776 56799999653221111110000 0000 012456555544556779999999
Q ss_pred CCCCCeEEEEEeEEccc-ceeeeEEEEEEecCC--------------eeecCCCceEEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 104 QETDAGYYRCQVIIGIN-NKISAEVDLQVRRPP--------------VISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
+.+|+|.|+|.+.+... ........|.|..++ ......+..+.+.+|++++|.|.+.+.+.+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 99999999999987621 122344567776542 111122445678899999999999998888999
Q ss_pred EEE--cCeeeC-----------C-CCceE----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 169 WRR--ENNAIL-----------P-TGGSI----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 169 W~~--~~~~~~-----------~-~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
|+| ++..+. . ..... .....|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999 444321 0 01111 1245799999999999999999998654433344455553
No 202
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.89 E-value=6.2e-22 Score=154.11 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=120.0
Q ss_pred eEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...+.+|+.+.|.|.+.+.| .+.+.|++++..+... ...+.+.+++.+|+|.|+|.+.+... +..+.|.|
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v 83 (170)
T 3ry4_A 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTV 83 (170)
T ss_dssp CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEE
T ss_pred CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCCc---eEeEEEEE
Confidence 34578999999999998876 5789999999887654 23467788999999999999997533 35678888
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..+|.+... +...+.+|+.+.|.|.+.+ .|.+.+.|++++..+.... ....|.|.++..+|+|
T Consensus 84 ~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---------------~~~~L~i~~v~~~d~G 147 (170)
T 3ry4_A 84 LFEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------------LDPTFSIPQANHSHSG 147 (170)
T ss_dssp ECCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES---------------SCCEEEESSCCGGGCE
T ss_pred ECCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC---------------CCCeEEEEeccccCCE
Confidence 877755443 3456778999999999954 5567999999988732111 2567999999999999
Q ss_pred EEEEEEEcCCCc-eeeEEEEEE
Q psy8823 302 SYICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 302 ~Y~C~a~n~~g~-~~~~~~l~v 322 (386)
.|+|.|.|..|. .+..+.|.|
T Consensus 148 ~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 148 DYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEEeCcCccccccEEEEE
Confidence 999999999997 445666655
No 203
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.89 E-value=3e-22 Score=162.14 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=123.4
Q ss_pred ccceeeecCCcEEEEEEEeeC-------CCCcEEEEecCCccccccccccCCc---eeEEeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-------QDYPVIWMKVDRNKVTEPLPISTGS---SLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
|....+.+|++|+|.|.+.+. +...+.|+|++.......+....+. ......+|+.+..+...++++|.|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 86 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI 86 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence 556678999999999998854 4567999998764321111111110 001123455555544456778999
Q ss_pred cccCCCCCeEEEEEeEEccccee---eeEEEEEEecCC---eeecCCCceEEEeCCccEEEEEEeeee----CCCeEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPP---VISDNSTRSLVVSEGQPVQLECFAGGH----PTPRISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~p---~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+... +..+.|.|..++ .+.. +. .+.+|+.++|.|.+.+. |.+.++|+
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~ 162 (214)
T 2zg1_A 87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF--LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT 162 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec--Cc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence 99999999999999987643222 246778887643 3322 12 25689999999999763 78899999
Q ss_pred EcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 171 RENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
+++...... .....+.|.|..+..+|+|.|+|.+.|..+. ..+..+.|.
T Consensus 163 ~~~~~~~~~--~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 163 GNALSPLDP--ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp SSTTSSSCS--SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCCCccCCC--CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 998654322 1235678999999999999999999997533 234444443
No 204
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.89 E-value=4.6e-23 Score=169.36 Aligned_cols=185 Identities=13% Similarity=0.174 Sum_probs=118.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCC-C-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQD-Y-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+.+.. |....+.+|++|+|.|.+.+.+. . .+.|+|++.......+.............++.... ..++++|.|.
T Consensus 20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 96 (234)
T 2j6e_L 20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAIS 96 (234)
T ss_dssp CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEE
T ss_pred ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEEC
Confidence 344544 77778999999999999986443 3 69999975322111111111110001123444332 3456799999
Q ss_pred ccCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 102 DIQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+.. ...+|+.++|.|.+.+.++ +.++|+++|
T Consensus 97 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 175 (234)
T 2j6e_L 97 GLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAVTVAWKADG 175 (234)
T ss_dssp SCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCCEEEEEETT
T ss_pred CCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCceEEEEEECC
Confidence 99999999999999986552 223345566632 33332211111 1235889999999987544 389999999
Q ss_pred eeeCCCCc----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.|.++..+|+|.|+|.|.|....
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 224 (234)
T 2j6e_L 176 APVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 224 (234)
T ss_dssp EECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred EECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence 87754311 1112356899999999999999999997654
No 205
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=6.4e-22 Score=156.60 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=118.7
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +++.+.|+|++..+.... .....+..|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~ 92 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence 5889999999999865 356899999998764211 11224567999999999999999999886432 235567777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|++++..... . .. .......|.|.+++.+
T Consensus 93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~--~--~~-------~~~~~~~L~I~~v~~~ 159 (188)
T 1oll_A 93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--Q--RG-------YGKVQAEFPLGPVTTA 159 (188)
T ss_dssp EESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--E--EE-------ECSSEEEEEEEECCGG
T ss_pred ecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc--c--cc-------CCCceeEEEECCCCcC
Confidence 764 55565443 455789999999999865 4568999999876322 1 00 0124678999999999
Q ss_pred CCeEEEEEEEcCCC---ceeeEEEEEEE
Q psy8823 299 QYGSYICRAANKLG---TSEKTVELFES 323 (386)
Q Consensus 299 d~G~Y~C~a~n~~g---~~~~~~~l~v~ 323 (386)
|+|.|+|.|.|... ..+..+.|.|.
T Consensus 160 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 160 HRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp GCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 99999999998752 23345666654
No 206
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.88 E-value=1.2e-21 Score=158.02 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=120.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee----------C-C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI----------L-P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~----------~-~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++. ..+ . . ...... ....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 45677899999999999998888899999853 211 0 0 111111 1348999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCcee--EE
Q psy8823 204 CVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHY--SI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~--~~ 276 (386)
|.+.+..+........+.|.. +|.+...++......|+.++|.|.+.| .|++ .+.|++++.. +...... ..
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 164 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTE--RRDGVLDSVTD 164 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCTTEEEEECC
T ss_pred EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCcc--CCCCceEccCC
Confidence 999987664333344666654 566665444444557999999999987 4554 8999999987 4333111 11
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
...........+.|.|.++..+|+|.|+|.|.|.......
T Consensus 165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence 1111112224568999999999999999999998775443
No 207
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.88 E-value=5.3e-22 Score=160.52 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=124.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.+...+....+.+|++|+|.|.+.+.+.+.+.|+|..............+........++... ...++++|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--GSGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--ccCCEEEEEECCCC
Confidence 4566667778899999999999999888889999996533211111111111111123455444 23467799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPT 179 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~ 179 (386)
.+|+|.|+|.+.+..+........|.| ..+|.+...... ..+..|+.++|.|.+.+.++ +.++|++++..+...
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 158 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPS-SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG 158 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCC-ceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence 999999999998654444455566777 344544432222 12346778999999988654 389999999887543
Q ss_pred C-----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 180 G-----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. ........|.|.....+|+|.|+|.+.|....
T Consensus 159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 1 11222456888888889999999999997644
No 208
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.88 E-value=2.6e-22 Score=158.38 Aligned_cols=173 Identities=23% Similarity=0.312 Sum_probs=122.2
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe----ccceeeecC-CCcceEEEEEcccCCCC
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR----DSRFAIRYD-TASSTYTLLVKDIQETD 107 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~L~i~~~~~~d 107 (386)
...+.+|++++|.|.+.+.+.+.+.|++++...... . ........ ..++..... ...++.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~---~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D 79 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILG---N-QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIED 79 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEE---E-ETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGG
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEE---e-cCceEecCChhhCCccccccccccCCeEEEEEecCCHHH
Confidence 345889999999999988888899999987532100 0 00000011 122322211 12345579999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeee
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS 187 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 187 (386)
+|.|+|.+.+.. ..+.|.|...+ . +....+.+|+.++|.|.+.+.|.+.+.|++++..+ .....
T Consensus 80 ~G~Y~C~~~~~~-----~~~~l~V~~~~---~--~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~ 143 (184)
T 2ny1_B 80 SDTYICEVEDQK-----EEVQLLVFGLT---A--NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGK 143 (184)
T ss_dssp CEEEEEEETTEE-----EEEEEEEEEEE---E--SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESS
T ss_pred CEEEEEEEEcCC-----CcEEEEEEEec---C--CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCce
Confidence 999999986432 24556665321 1 12236789999999999988899999999987654 33567
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
.|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|...|
T Consensus 144 ~L~i~~v~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~p 181 (184)
T 2ny1_B 144 TLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ 181 (184)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC
T ss_pred EEEEecCCcCCCeEEEEEEEECCce-EEEEEEEEEEecC
Confidence 8999999999999999999987665 5667778777655
No 209
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.88 E-value=7.1e-22 Score=164.21 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=130.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-c-CCceeE---EeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-S-TGSSLI---IRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~~L~ 99 (386)
+...+....+.+|++|+|.|.+.+.+ .+.+.|+|.........+.. . .+.... ...+++....+.....++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 44566778899999999999988643 56799999443221111100 0 000000 11346666665666778899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---------------CeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---------------PVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
|.+++.+|+|.|+|.+.+...........|.|... +.+. ..+....+.+|++++|.|.+.+.+.
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~ 162 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT-QTPASLAVSLGQRATISCRASENVD 162 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE-EECSEEEECTTSCEEEEEEESSCCE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE-CcCCeEEEeCCCCEEEEEEecCccc
Confidence 99999999999999998744433345566777642 2222 2345577899999999999988776
Q ss_pred C----eEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 165 P----RISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 165 ~----~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+ .+.|++++ .... . ..+... ....|.|.+++.+|+|.|+|.+.|...........|.|
T Consensus 163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v 242 (253)
T 3uzq_A 163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI 242 (253)
T ss_dssp ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence 6 89999853 2111 0 011111 13469999999999999999999865544445556666
Q ss_pred Eecce
Q psy8823 223 EFAPV 227 (386)
Q Consensus 223 ~~~p~ 227 (386)
...+.
T Consensus 243 ~~~~~ 247 (253)
T 3uzq_A 243 KRPLE 247 (253)
T ss_dssp CCC--
T ss_pred cCCCC
Confidence 55443
No 210
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.88 E-value=2.8e-22 Score=161.96 Aligned_cols=175 Identities=15% Similarity=0.243 Sum_probs=119.3
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|++|+|.|.+. +.+.+.|+|+......................++.... ...+++|.|.+++.+|+|.|+
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~ 84 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYY 84 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEE
Confidence 66789999999999998 77889999964322111111111111001223444433 345679999999999999999
Q ss_pred EEeEEccc-ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCeeeCCC------
Q psy8823 113 CQVIIGIN-NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNAILPT------ 179 (386)
Q Consensus 113 C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~------ 179 (386)
|.+.+..+ ......+.|.|. .+|.+....... .+.+|+.++|.|.+.+.+ .+.+.|+++|..+...
T Consensus 85 C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~ 163 (211)
T 3tv3_L 85 CGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTP 163 (211)
T ss_dssp EEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCH-HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC
T ss_pred EEEecCCCceeECCCceEEEeCCCCcCCeeEecCCch-hhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCc
Confidence 99998655 345566778887 455444332221 223699999999998863 4789999999887542
Q ss_pred ----CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 180 ----GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.........|.|.++..+|+|.|+|.+.|..+.
T Consensus 164 ~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~ 200 (211)
T 3tv3_L 164 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 200 (211)
T ss_dssp EECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred eECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 112223457999999999999999999997654
No 211
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=170.33 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=123.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L 98 (386)
..+.+...+....+.+|++|+|.|.+. .+...+.|+|.........+....+....... +|+....+ ..++++|
T Consensus 25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL 102 (268)
T 3pl6_D 25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL 102 (268)
T ss_dssp --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence 345566667777899999999999986 56678999995432211111111111111111 56655543 3567899
Q ss_pred EEcccCCCCCeEEEEEeEEc-ccceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIG-INNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISW 169 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W 169 (386)
.|.+++.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+.+|+.++|.|.+.+.+++ .++|
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 182 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 182 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence 99999999999999999863 223334455677765 44433322333334568999999999886654 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| +|.|+|.+.|....
T Consensus 183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 9999887542 1222234567888887777 99999999986543
No 212
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.88 E-value=4.1e-21 Score=153.72 Aligned_cols=166 Identities=18% Similarity=0.164 Sum_probs=116.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++|+|.|.+. .+.+.+.|+|++..+.... ...+ ......+..|.|.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~-----------~~~~----~~~~~~~~~l~I~ 68 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLR-----------LIGE----HHDGVSKANFSIS 68 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEE-----------EECE----EETTEEEEEEEES
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcce-----------eeee----cCCCCceEEEEec
Confidence 45678887776 6688999999999987 4667899999886542100 0000 0112245589999
Q ss_pred ccCCCCCeEEEEEeEEccc----ceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGIN----NKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+... ...+..+.|.|... |.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++.
T Consensus 69 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~ 145 (201)
T 1nkr_A 69 RMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG--PTVLAGENVTLSCSSRS-SYDMYHLSREGE 145 (201)
T ss_dssp SCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC--SEECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred cCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC--CccCCCCeEEEEEeCCC-CCceEEEEECCc
Confidence 9999999999999976421 23456677777643 44433222 35789999999999876 567899999987
Q ss_pred eeCCCCce-E----EeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 175 AILPTGGS-I----YRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 175 ~~~~~~~~-~----~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+...... . .....|.|.+++ |+|.|+|.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 65432111 1 125679999998 999999999865
No 213
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.88 E-value=1e-21 Score=160.90 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=126.7
Q ss_pred CCceEEEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeC---------C----CCce-----------EEeeeEEEECCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPT-PRISWRRENNAIL---------P----TGGS-----------IYRGSILKIPQIT 195 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~---------~----~~~~-----------~~~~~~l~i~~~~ 195 (386)
.+..+.+.+|+.+.|.|.+.+.+. +.+.|++++.... . .... ......|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 355678899999999999988885 8999998764421 0 0011 1122459999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEecc---eEeeCCCcccccCCCcE-EEEEEE-EecCCCeeEEEeCCeeeeeec
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDM-DLECHV-EAYPPPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~~~~~W~~~~~~~~~~~ 270 (386)
.+|+|.|+|.+.+.........+.|.|..+| .+...+....+..|+.+ .|.|.+ .|.|.|.+.|++++.. +..
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~--~~~ 163 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQR--LEV 163 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEE--CCC
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCcc--Ccc
Confidence 9999999999998763336678888888774 44555556667788887 999999 8999999999999987 333
Q ss_pred Cc----eeEEeeee----ecCceeeeEEEEeecccCCCeEEEEEEEcC-----CCc-eeeEEEEEE
Q psy8823 271 NQ----HYSISHFA----TADEFTDTTIRVITIEKRQYGSYICRAANK-----LGT-SEKTVELFE 322 (386)
Q Consensus 271 ~~----~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-----~g~-~~~~~~l~v 322 (386)
.. ++.+.... .......+.|.|.....+|.|.|+|.|.|. .|. .+..+.|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 32 22222111 111122367888866777799999999994 444 444555544
No 214
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.88 E-value=4.5e-21 Score=156.52 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=114.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeE-----Eeccceee-ecCCCcceEEEEEcc
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLI-----IRDSRFAI-RYDTASSTYTLLVKD 102 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~L~i~~ 102 (386)
.+..+.+|++|+|.|.+.+.+.+ .|.|+|++....- .....+.... ....|... ......++++|.|.+
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v--~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVV--NVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEE--EEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceE--EEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 45668999999999999865443 5999998754310 0011111000 00112221 223345678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.|..+ .....+.+.+..++.. ......+.+|+.+.|.|.+.+ .|.|.++|+++++.+.....
T Consensus 90 v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~~~~~~---~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~ 165 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDF-YEKALVELKVAALGSD---LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE 165 (226)
T ss_dssp CCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCC---CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred CchHHCeeEEEEEECCCc-EEEEEEEEeeccceec---ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence 999999999999987543 2344444444333221 233456778999999999987 58999999997665543322
Q ss_pred eE-E-e-e---eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 182 SI-Y-R-G---SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 182 ~~-~-~-~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.. . . . ..+.+.+++.+|+|.|+|.|.|..+. ..+...|.|.
T Consensus 166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~ 212 (226)
T 4f80_A 166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIA 212 (226)
T ss_dssp CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCC
T ss_pred eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEEC
Confidence 11 1 1 1 12344467789999999999999887 5566666654
No 215
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.88 E-value=1.2e-21 Score=163.12 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=127.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccccc--CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPIS--TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ .+.+.|+|.........+... .+.... ...+|+....+.....++|.|.+
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (256)
T 3umt_A 8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS 87 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence 34556689999999999998755 577999985533211111100 000000 12356666655556678899999
Q ss_pred cCCCCCeEEEEEeEEcc---cceeeeEEEEEEec----------------CCeeecCCCceEEEeCCccEEEEEEeeeeC
Q psy8823 103 IQETDAGYYRCQVIIGI---NNKISAEVDLQVRR----------------PPVISDNSTRSLVVSEGQPVQLECFAGGHP 163 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~ 163 (386)
++.+|+|.|+|.+.+.. .......+.|.|.. ++.+.. .+....+.+|++++|.|.+.+.+
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~~~~ 166 (256)
T 3umt_A 88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQ-SPSSLSASLGERVSITCRASQDI 166 (256)
T ss_dssp CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEE-ECSEEEECTTCCEEEEEEESSCC
T ss_pred CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEc-CCCeEEEECCCCEEEEEEEecCC
Confidence 99999999999998651 22234456677764 333332 24557789999999999999888
Q ss_pred CCeEEEEEcC--eeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec
Q psy8823 164 TPRISWRREN--NAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA 225 (386)
Q Consensus 164 ~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~ 225 (386)
.+.+.|+++. .... ...+... ....|.|.+++.+|+|.|+|.+.+...........|.|..+
T Consensus 167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence 8899999852 2111 0011111 13469999999999999999999865544445566777654
Q ss_pred c
Q psy8823 226 P 226 (386)
Q Consensus 226 p 226 (386)
+
T Consensus 247 ~ 247 (256)
T 3umt_A 247 A 247 (256)
T ss_dssp -
T ss_pred C
Confidence 4
No 216
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.88 E-value=3e-22 Score=158.04 Aligned_cols=144 Identities=19% Similarity=0.309 Sum_probs=107.1
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
...+|++++|.|.+.+ ++ .++|+|++..+... .+..|.|.+ ++.+|+|.|+|.+.|..+. ....+.+.|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~ 81 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGS 81 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCS
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEec
Confidence 3467999999999987 43 49999999988654 234799999 9999999999999998776 33344443322
Q ss_pred --cceEee----------------CC----C---cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 225 --APVITV----------------PK----P---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 225 --~p~~~~----------------~~----~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
++.... .. . ...+.+|+.+.|.|.+ |.|.+.|++++.. +.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~--i~~~~~------ 150 (186)
T 1jbj_A 82 ADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSI--ISPLNA------ 150 (186)
T ss_dssp CCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEE--CCCSSC------
T ss_pred ccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEE--CcccCC------
Confidence 111000 00 0 0233489999999998 8889999999988 332111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 ------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 36679999999999999999999999876
No 217
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.87 E-value=3.6e-22 Score=155.95 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=113.9
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCeeeC----------CCCceE-EeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENNAIL----------PTGGSI-YRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~----------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.+.+|++++|.|...+ .+.+.+.|+|++..+. ...+.. ..++.|.|.+++.+|+|.|+|.+.|..
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~ 84 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 84 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence 456789999999995422 4556899999986542 111111 124569999999999999999999988
Q ss_pred CCc-eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 211 GKG-TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 211 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
+.. .+..+.|.|..++. .+.. ...+..+.|.|.+.|.|+|.+.|++++.. +.... .
T Consensus 85 g~~~~~~~~~l~V~~~~~----~p~i-~~~~~~v~L~C~~~g~p~p~i~W~~~g~~--l~~~~----------------~ 141 (176)
T 1hng_A 85 GTRILNKALDLRILEMVS----KPMI-YWECSNATLTCEVLEGTDVELKLYQGKEH--LRSLR----------------Q 141 (176)
T ss_dssp CCEEEEEEEEEEEECCCC----CCEE-EEETTTTEEEEECSSCSSCEEEEEETTEE--EEEES----------------S
T ss_pred CCEEEEEEEEEEEeCCCC----CCEE-EecCCcEEEEEEecCCCCcEEEEEECCEE--CCCCC----------------c
Confidence 874 35667777766431 0111 12244699999999999999999999987 32211 1
Q ss_pred EEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.++..+|+|.|+|.|.|..|..+.+..|.+
T Consensus 142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 345578899999999999999999988877654
No 218
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.87 E-value=5.1e-21 Score=158.55 Aligned_cols=180 Identities=14% Similarity=0.181 Sum_probs=118.9
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCe-----EEEEEcCeeeCCC---------------Cce-------EEeeeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPR-----ISWRRENNAILPT---------------GGS-------IYRGSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~---------------~~~-------~~~~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+.|.+. +.|++++...... ... ......|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 34556788999999999998887765 9999974322100 000 00134599999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeee----
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQV---- 267 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~---- 267 (386)
++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+. .....|+.+.|.|.+.| +|.+ .+.|++++..+.
T Consensus 89 v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999999997765 56678889988888776544 33456778889999998 8988 999999986411
Q ss_pred eecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce--eeEEEEEE
Q psy8823 268 LTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS--EKTVELFE 322 (386)
Q Consensus 268 ~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v 322 (386)
+..... ..............+.|.|.....+|+|.|+|.|.|..+.. ..++.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 111110 01111112222345678999999999999999999999874 44566666
No 219
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.87 E-value=1.7e-21 Score=161.90 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=128.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccC--CceeE---EeccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPIST--GSSLI---IRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+.... +.... ..++|+.+..+...+.++|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 345667799999999999998764 5679999964321111111000 00000 0134565554444567899999
Q ss_pred ccCCCCCeEEEEEeEEcccc----eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-----eEEEEE-
Q psy8823 102 DIQETDAGYYRCQVIIGINN----KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-----RISWRR- 171 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-----~v~W~~- 171 (386)
+++.+|+|.|+|.+.+..+. .....+.|.|..++.+... +....+.+|++++|.|.+.+.+.+ .+.|+|
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQT-PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEec-CcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 99999999999999876331 2234567778766654432 455678999999999999887764 899999
Q ss_pred -cCeeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 172 -ENNAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 172 -~~~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
++..+. . ...... ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 454331 0 111111 2357999999999999999999985443333445566643
No 220
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=9.7e-22 Score=163.69 Aligned_cols=181 Identities=21% Similarity=0.245 Sum_probs=119.9
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.+....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+. ......... ...|+.+..+...+.++|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (257)
T 1f3r_B 6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL 85 (257)
T ss_dssp EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence 34556789999999999998764 6789999974221111111 010110000 13466655544456789999999
Q ss_pred CCCCCeEEEEEeEEccc--------ceeeeEEEEEEecCC--------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 104 QETDAGYYRCQVIIGIN--------NKISAEVDLQVRRPP--------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
+.+|+|.|+|.+.+..+ ......+.|.|..++ ......+..+.+.+|++++|.|.+.+
T Consensus 86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 165 (257)
T 1f3r_B 86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ 165 (257)
T ss_dssp CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence 99999999999987532 112244577777653 11112234556889999999999988
Q ss_pred eCCCeEEEEE--cCeeeCC------------CCceE----EeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 162 HPTPRISWRR--ENNAILP------------TGGSI----YRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 162 ~~~~~v~W~~--~~~~~~~------------~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.+.+.|++ ++..+.. ..... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 8888999999 4443210 11111 123579999999999999999999864
No 221
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.87 E-value=4.9e-21 Score=157.63 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=118.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|. .+.+.+.+.|+|+........+.. ....... ....++.... .....++|.|.++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v 80 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELA 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecC
Confidence 455567778999999999999 667788899999643211111111 1110000 0123454443 2334568999999
Q ss_pred CCCCCeEEEEEeEEcccc----eeeeEEEEEEecCCe-----------eecCCCceEEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 104 QETDAGYYRCQVIIGINN----KISAEVDLQVRRPPV-----------ISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~-----------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
+.+|+|.|+|.+.+..+. .......|.|...+. .....+....+.+|++++|.|.+.+.|.+.+.
T Consensus 81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~ 160 (238)
T 2p1y_A 81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP 160 (238)
T ss_dssp CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence 999999999999865321 122345677765442 12222455678999999999999998889999
Q ss_pred EEEcCee-----eC---------CCCceEEe------eeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 169 WRRENNA-----IL---------PTGGSIYR------GSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 169 W~~~~~~-----~~---------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|++++.. +. ........ ...|.|.+++.+|+|.|+|.+.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9997421 10 01111111 3579999999999999999999874
No 222
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.87 E-value=4.1e-21 Score=159.13 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=121.7
Q ss_pred Ceeeee-ccceeeecCCcEEEEEEEeeCCCCc-----EEEEecCCccccccccc-cCCceeEEeccceeee-cCCCcceE
Q psy8823 25 PTISYI-SQEQIKDIGGTVELKCSVQYAQDYP-----VIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIR-YDTASSTY 96 (386)
Q Consensus 25 p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (386)
+.+.+. +....+.+|++|+|.|.+.+.+.+. +.|++++.........+ ..+........+..+. .....+++
T Consensus 3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
T 3pv7_A 3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA 82 (248)
T ss_dssp EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence 344433 3445688999999999998776654 99999765432111111 0111111111111111 11223566
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENN 174 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~ 174 (386)
+|.|.+++.+|+|.|+|.+.+..+ .....+.|.|..+|.+..... .....|+.+.|.|.+.+ .|.+ .++|++++.
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~ 159 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPL-KAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQ 159 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCc-cceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence 899999999999999999987643 456678889988887665433 23446778889999988 7888 999999986
Q ss_pred eeCC----------------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEE
Q psy8823 175 AILP----------------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEV 222 (386)
Q Consensus 175 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v 222 (386)
.+.. ..........|.+.....+|.|.|+|.+.|..+. .....+.|.|
T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 4321 1122233567899999999999999999997765 3455667777
No 223
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.87 E-value=3.1e-21 Score=157.05 Aligned_cols=190 Identities=16% Similarity=0.277 Sum_probs=120.6
Q ss_pred eccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCcee-----EEeccceeeecC-CCcceEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSL-----IIRDSRFAIRYD-TASSTYTL 98 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~L 98 (386)
.+....+.+|++++|.|.+.+.+ ...+.|++++..+ .....+... ....++..+..+ ...++.+|
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v----~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 82 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNI----IQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL 82 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEE----EEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEE
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEE----EEEeCCccccccccccccCceEEccccccCCEEEE
Confidence 34455688999999999987554 3469999976221 111111000 001122222211 13456799
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAIL 177 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~ 177 (386)
.|.+++.+|+|.|+|.+.+ .+.....+.|.|..++...... ....+.+|+.++|.|.+.|.|.+.+.|+++ +..+.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~~-~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~ 159 (222)
T 3sbw_C 83 QITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQR-ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159 (222)
T ss_dssp EESSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEEE-EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred EEcCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCce-eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence 9999999999999999987 3445667888888766433211 112567899999999999999999999998 44433
Q ss_pred CCCceEE---eee---EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 178 PTGGSIY---RGS---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 178 ~~~~~~~---~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
....... ... ...+..+..+|.|.|+|.+.|..+. ....+.|.|..+|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE-ENHTAELVIPELPL 214 (222)
T ss_dssp CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCCC--
T ss_pred CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccc-eeeEEEEEecCCcc
Confidence 2211100 111 1122234568999999999999887 56777777766554
No 224
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=2.8e-21 Score=158.64 Aligned_cols=182 Identities=17% Similarity=0.148 Sum_probs=128.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+.. ...+ ......+..|.|.
T Consensus 5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~-------------~~~~----~~~~~~~~~L~I~ 65 (242)
T 1p6f_A 5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAV-------------DRPK----PPERINKVKFYIP 65 (242)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEE-------------ECCS----SCTTCCEEEEEEC
T ss_pred CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccc-------------cccc----ccCCcceeEEEec
Confidence 457888888877 7899999999999863 4567999998754310 0000 0112345689999
Q ss_pred ccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 102 DIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.
T Consensus 66 ~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p--~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~ 142 (242)
T 1p6f_A 66 DMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSH 142 (242)
T ss_dssp SCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES--CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCE
T ss_pred CCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC--CCccCCCCcEEEEEecCCC-CCEEEEEECCCccC
Confidence 9999999999999976432 2345667787764 45444322 2357899999999998754 46899999987653
Q ss_pred CCCceEEeeeEEEECCCCCCCCeEEEEEEecCC--CCceeeeEEEEEEec
Q psy8823 178 PTGGSIYRGSILKIPQITKEDRGTYYCVAENGV--GKGTRRNIAVEVEFA 225 (386)
Q Consensus 178 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~--~~~~~~~~~l~v~~~ 225 (386)
...........|.|.+++.+|+|.|+|.+.|.. ....+..+.|.|...
T Consensus 143 ~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 143 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred ccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 211111235689999999999999999998864 223466788888763
No 225
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.87 E-value=4.3e-21 Score=159.76 Aligned_cols=200 Identities=16% Similarity=0.229 Sum_probs=130.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-c-CCceeEE---eccceeeecCCCcce
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-S-TGSSLII---RDSRFAIRYDTASST 95 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~~ 95 (386)
.++.+...+....+.+|++|+|.|.+.+. +.+.+.|+|.........+.. . .+..... ..+|+....+...+.
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 45666777788889999999999999873 566799998653321111111 1 1111010 124666665556677
Q ss_pred EEEEEcccCCCCCeEEEEEeEEc-----------ccceeeeEEEEEEecCCe--------------eecCCCceEEEeCC
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIG-----------INNKISAEVDLQVRRPPV--------------ISDNSTRSLVVSEG 150 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~~g 150 (386)
++|.|.+++.+|+|.|+|.+.+. ..........|.|..++. .....+....+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 89999999999999999999865 122334456677776422 12233456788999
Q ss_pred ccEEEEEEeeeeCC-CeEEEEEcC--eeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 151 QPVQLECFAGGHPT-PRISWRREN--NAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 151 ~~v~l~C~~~~~~~-~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
++++|.|.+.+.+. +.+.|++.. .... ...+... ....|.|.+++.+|+|.|+|.+.|...
T Consensus 165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 99999999988776 899999842 2111 0111111 134699999999999999999998654
Q ss_pred CceeeeEEEEE
Q psy8823 212 KGTRRNIAVEV 222 (386)
Q Consensus 212 ~~~~~~~~l~v 222 (386)
........|.|
T Consensus 245 ~~~g~gt~l~V 255 (256)
T 3juy_B 245 YTFGQGTKLER 255 (256)
T ss_dssp CEECCCEEEEE
T ss_pred ceEcCCEEEEE
Confidence 43333344443
No 226
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.87 E-value=1.6e-21 Score=161.89 Aligned_cols=182 Identities=16% Similarity=0.308 Sum_probs=119.3
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+...|....+.+|++|+|.|.+.+.+.+.+.|+|+........+............+++... ....+++|.|.+++
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~ 82 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS--GSGTDYSLTISNLE 82 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCC
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe--CCCCEEEEEEccCC
Confidence 3455556677799999999999999888889999997543221111111111111113344332 23456789999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCC------------------eeecCCCceEEEeCCccEEEEEEeeeeC--C
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPP------------------VISDNSTRSLVVSEGQPVQLECFAGGHP--T 164 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~ 164 (386)
.+|+|.|+|.+.+...........|.|..++ ......+....+.+|++++|.|.+.+.+ .
T Consensus 83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~ 162 (250)
T 3esu_F 83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSS 162 (250)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGG
T ss_pred hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccC
Confidence 9999999999987544434444567776531 1112223456788999999999998766 6
Q ss_pred CeEEEEEc--CeeeCCC-----------------CceEE------eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 165 PRISWRRE--NNAILPT-----------------GGSIY------RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 165 ~~v~W~~~--~~~~~~~-----------------~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+.+.|+++ +..+... .+... ...+|.|.+++.+|+|.|+|.+.+
T Consensus 163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 78999997 3322100 11111 123699999999999999999997
No 227
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.87 E-value=1.6e-21 Score=162.28 Aligned_cols=186 Identities=15% Similarity=0.217 Sum_probs=123.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
++.+...+....+.+|++++|.|.+.+.+ .+.+.|+|++.......+.............++.... ...+++|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 115 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTL 115 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEE
Confidence 56677777888899999999999998776 3789999865322111111111000000123444432 3456689
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
.|.+++.+|+|.|+|.+.+...........+.|.. +|.+....+... ...|+.++|.|.+.+.++ +.++|++++
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g 194 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDG 194 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESS
T ss_pred EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECC
Confidence 99999999999999999875443333344566653 444443222211 225779999999988543 469999999
Q ss_pred eeeCCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+... +........|.|.++..+|+|.|+|.|.|....
T Consensus 195 ~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 195 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp SEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 887654 111223567999999999999999999997654
No 228
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.87 E-value=1.1e-21 Score=159.34 Aligned_cols=183 Identities=16% Similarity=0.259 Sum_probs=119.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCC-ceeEE---eccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTG-SSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
.+...+ ...+.+|++|+|.|.+.+. +.+.+.|+|.........+..... ..... ..+|+.... ..++++|.|
T Consensus 3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 79 (218)
T 3s96_B 3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSI 79 (218)
T ss_dssp SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEE
T ss_pred eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEE
Confidence 444445 6779999999999999988 888999999543221111111111 00011 113444433 456779999
Q ss_pred cccCCCCCeEEEEEeEEccc----ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGIN----NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+ ......+.|.|. .+|.+....+.. ....|+.++|.|.+.+ .|.+ .++|+
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~-~~~~~~~v~L~C~~~g~~p~~~~v~W~ 158 (218)
T 3s96_B 80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSS-EELKENKATLVCLISNFSPSGVTVAWK 158 (218)
T ss_dssp SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCc-ccccCCcEEEEEEECcccCCCeEEEEE
Confidence 99999999999999987653 233445677777 344443322211 2335788999999987 4666 89999
Q ss_pred EcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+++..+.... ........|.|.....+|+|.|+|.+.|..+.
T Consensus 159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 209 (218)
T 3s96_B 159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT 209 (218)
T ss_dssp ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence 9998875421 11122345888888888999999999997654
No 229
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.87 E-value=3.7e-21 Score=158.64 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=117.1
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...|....+.+|++|+|.|.+.+.+.+.+.|+|+........+...........+.|+.... ....++|.|.+++.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET 80 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCCh
Confidence 4666677788999999999999988888889999965322111111111000000123444432 23567899999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCe------------eecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEE
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPV------------ISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRR 171 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------------~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~ 171 (386)
+|+|.|+|.+.+.........+.|.|..+|. .....+....+.+|++++|.|.+.+.+ .+.+.|++
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 9999999999865433333455677776542 111112223588999999999998765 47899999
Q ss_pred cC--eeeC------C----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 172 EN--NAIL------P----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 172 ~~--~~~~------~----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
++ ..+. . ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 53 2210 0 111111 1248999999999999999999874
No 230
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.87 E-value=7.7e-21 Score=153.56 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=120.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC---CCeEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP---TPRISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. . ..+... ....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 4556788999999999998876 3689999863 2210 0 111111 1347999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~ 274 (386)
.|+|.+.+..+........+.|. .+|.+...+.......|+.++|.|.+.|.+++ .+.|++++.. +......
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~ 164 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP--VTAGMET 164 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEE
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEe--CCCCeec
Confidence 99999998765433344556663 46666654444445578899999999986443 8999999987 4433211
Q ss_pred E-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 275 S-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 275 ~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
. ............+.|.|.++..+|+|.|+|.|.|.....+.++
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 165 TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 0 0111111222456799999999999999999999987655544
No 231
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.87 E-value=1.7e-21 Score=157.45 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=117.2
Q ss_pred ccceeeecCCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
|....+.+|++|+|.|.+.+.+ .+.+.|++++.......+.............++.... ..++++|.|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 84 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTED 84 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccC
Confidence 6777899999999999998766 3679999975321111111111000000123444332 3456699999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGG 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~ 181 (386)
+|.|+|.+.+..+........|.|. .+|.+....+.. .+..|+.++|.|.+.+.+++ .++|++++..+.....
T Consensus 85 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 163 (212)
T 1q0x_L 85 EAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME 163 (212)
T ss_dssp CEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred CEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee
Confidence 9999999987654333344566664 344443322211 13368899999999886543 8999999988754311
Q ss_pred ----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 182 ----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 182 ----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.......|.|.+...+|+|.|+|.|.|....
T Consensus 164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 164 TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 1122356899999999999999999996543
No 232
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=6.1e-21 Score=157.27 Aligned_cols=181 Identities=16% Similarity=0.288 Sum_probs=119.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+.............|+.... ....++|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID 80 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence 455667778899999999999998777 6789999975322111111110000000123454432 3456689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC-----eeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC-
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP-----VISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRREN- 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~- 173 (386)
+++.+|+|.|+|.+.+..+........|.|..++ ......+....+.+|++++|.|.+.+.| .+.+.|+++.
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~ 160 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRP 160 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred CCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECC
Confidence 9999999999999987644333455677777643 2222224456788999999999998876 3589999962
Q ss_pred -eeeC-----------------CCCceEEe------eeEEEECCCCCCCCeEEEEEEec
Q psy8823 174 -NAIL-----------------PTGGSIYR------GSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 174 -~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.... ...+.... ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 161 EQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp TSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 2110 00111111 24799999999999999999985
No 233
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=6e-21 Score=157.81 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=124.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC-----ceEEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-----GSIYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
.+|.+...+ . ..+.+|++++|.|.+.+ +.+.+.|+|++..+.... ........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P-~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 6 RKPSLLAHP-G-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCEECCBS-C-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCEEEEcC-C-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 345554332 2 46889999999999864 467899999987542111 011245679999999999999999997
Q ss_pred cCCC----CceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeee
Q psy8823 208 NGVG----KGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280 (386)
Q Consensus 208 ~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 280 (386)
+... ...+..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..... ..... .
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~--~~~~~----~ 154 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHER--RFSAG----P 154 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEE--CCBCB----C
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCc--ccccc----c
Confidence 6421 2245667777765 355554443 467899999999999775 468999999977322 11100 0
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCC-----ceeeEEEEEEEecCCCCC-CCCCceeecCcceeeeEEecCCC-
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLG-----TSEKTVELFESIIPVCPP-QTQPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c~~~~~p- 353 (386)
.........|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|.+.|.... .+.......|..+.|.|......
T Consensus 155 ~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~~~~~ 232 (257)
T 1b6u_A 155 KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLI 232 (257)
T ss_dssp CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------
T ss_pred ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEcchHH
Confidence 0011136789999998 99999999997632 334568888888766431 11122344577788888765444
Q ss_pred -CCccccc
Q psy8823 354 -TSWEPQR 360 (386)
Q Consensus 354 -~~W~~~~ 360 (386)
+.|+...
T Consensus 233 ~~~~~~~~ 240 (257)
T 1b6u_A 233 SEEDLNLD 240 (257)
T ss_dssp --------
T ss_pred HHHHhhhh
Confidence 5676443
No 234
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=1.6e-20 Score=148.16 Aligned_cols=161 Identities=20% Similarity=0.387 Sum_probs=118.3
Q ss_pred eeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..+.+|++++|.|.+.+.+.+ .+.|++++..+... .. ......|.|. +.+|+|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~--------------~~-------~~~~~~l~i~--~~~d~G~Y 64 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------------AL-------PGQKTEFKVD--SDDQWGEY 64 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECT--------------TC-------CCSEEEEEEC--GGGCCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecc--------------cc-------cCCcEEEEEe--chhhCeEE
Confidence 457899999999999876655 79999987543111 00 0113356666 68999999
Q ss_pred EEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-CCeEEEEE---cCeeeCCCC--c-eEE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRR---ENNAILPTG--G-SIY 184 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~---~~~~~~~~~--~-~~~ 184 (386)
+|.+.+. ....+.|.|..+|.+.... ....+.+|+.+.|.|.+.+.| .+.+.|++ ++....... . ...
T Consensus 65 ~C~~~n~----~~~~~~l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 139 (184)
T 3b5h_A 65 SCVFLPE----PMGTANIQLHGPPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139 (184)
T ss_dssp EEEEEST----TSCEEEEEECCSCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEE
T ss_pred EEEEECC----cCcEEEEEEecCCceeecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEE
Confidence 9999862 2356788888888776554 456788999999999999999 79999999 555443221 1 111
Q ss_pred ----eeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 185 ----RGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 185 ----~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
....|.|.+++ .+|.|.|+|.+.|..+. ....+.|.|.
T Consensus 140 ~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 182 (184)
T 3b5h_A 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRVR 182 (184)
T ss_dssp EEETTEEEEEECSCCTTTSSEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred EecCCeeEEEEeeccccccCceEEEEEEeCCCc-ceEEEEEEEe
Confidence 13489999999 99999999999999887 4455677664
No 235
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.87 E-value=5.7e-22 Score=154.81 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred eeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 34 QIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..+.+|++|+|.|.... .+.+.|.|+|++..+.. +..+......++++.+.. +++|.|.+++.+|+|.|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~----~~~~~~~~~~~~r~~~~~-----~gsL~I~~v~~~D~G~Y 76 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE----FKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGTY 76 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEE----EETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEEE
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEE----EcCCCeecCCCCeEEECC-----CCcEEEcccccccCEEE
Confidence 45789999999995332 44567999998753311 111111122345555532 22699999999999999
Q ss_pred EEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEE
Q psy8823 112 RCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190 (386)
Q Consensus 112 ~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~ 190 (386)
+|.+.+..+.. .+..+.|.|..++.. .. ....+..+.|.|.+.+.|.+.+.|++++..+.... .+.
T Consensus 77 ~C~~~n~~g~~~~~~~~~l~V~~~~~~-----p~-i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~ 143 (176)
T 1hng_A 77 NVTVYSTNGTRILNKALDLRILEMVSK-----PM-IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKT 143 (176)
T ss_dssp EEEEEETTCCEEEEEEEEEEEECCCCC-----CE-EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSE
T ss_pred EEEEEeCCCCEEEEEEEEEEEeCCCCC-----CE-EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEE
Confidence 99999876554 466778888764321 11 22335569999999999999999999998764332 245
Q ss_pred ECCCCCCCCeEEEEEEecCCCC
Q psy8823 191 IPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 191 i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.++..+|+|.|+|.|.|..+.
T Consensus 144 i~~~~~~d~G~Y~C~a~N~~g~ 165 (176)
T 1hng_A 144 MSYQWTNLRAPFKCKAVNRVSQ 165 (176)
T ss_dssp EEEECSCCSSCEEEEEEETTEE
T ss_pred EEEEEccCCeEEEEEEEecCCC
Confidence 5577899999999999999886
No 236
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.87 E-value=7.1e-21 Score=153.89 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=122.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|+.++|.|.+.+.+.+.+.|++.... +. . ..+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 3456788999999999999888889999984311 00 0 111111 2347999999999999999
Q ss_pred EEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc--eeEE
Q psy8823 204 CVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ--HYSI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~--~~~~ 276 (386)
|.+.+..+........+.| ..+|.+...+.......|+.++|.|.+.|.+++ .+.|++++.. +.... ....
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~ 165 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE--KRDGVLQSVTD 165 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE--ECTTEEEEECC
T ss_pred EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc--cCCceEeccCc
Confidence 9999876543445566777 567777766666666678889999999987653 8999999987 44321 1111
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
...........+.|.|.....+|+|.|+|.|.|........
T Consensus 166 ~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~ 206 (213)
T 3r06_A 166 QDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV 206 (213)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred eeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence 11111222345678899999999999999999987654433
No 237
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.87 E-value=3.7e-21 Score=160.06 Aligned_cols=185 Identities=16% Similarity=0.356 Sum_probs=126.2
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.+...|....+.+|++|+|.|.+.+.+.+.+.|+|.........+. ..........++++....+.....++|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 4555667778999999999999998888899999955332211111 112222233456777655566678899999999
Q ss_pred CCCCeEEEEEeEEcccc---eeeeEEEEEEec--------------------CCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 105 ETDAGYYRCQVIIGINN---KISAEVDLQVRR--------------------PPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
.+|+|.|+|.+.+..+. .....+.|.|.. +|.+. ..+....+.+|++++|.|.+.+
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEECS
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEcCC
Confidence 99999999999875431 223345667664 23333 3345667889999999999977
Q ss_pred eCCCeEEEEEcCee--e--CC-------------CCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 162 HPTPRISWRRENNA--I--LP-------------TGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 162 ~~~~~v~W~~~~~~--~--~~-------------~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. .+.+.|++.... . .. ..+. ......|.|.+++.+|+|.|+|.+.|..+.
T Consensus 164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 6 678999984311 1 00 0000 012347999999999999999999986553
No 238
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=165.58 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=122.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCC-ceeE---EeccceeeecCCCcceEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STG-SSLI---IRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~ 97 (386)
..+.+...+....+.+|++|+|.|.+.+.+...+.|+|++.......+.. ... .... ...+|+.+..+ ..++++
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s 101 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST 101 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence 45667777888889999999999999877777899999763221111110 000 0000 01345555443 256779
Q ss_pred EEEcccCCCCCeEEEEEeEEccc-----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCC--
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGIN-----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT-- 164 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-- 164 (386)
|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+....+....+.+|+.++|.|.+.+.++
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 99999999999999999987321 1122335677764 3433322111112336889999999988744
Q ss_pred CeEEEEEcCeeeCCCC---------------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 165 PRISWRRENNAILPTG---------------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+.++|++++..+.... ........|.|.+....| .|.|+|.+.|....
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 6899999998764321 112234468888888765 67899999996544
No 239
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.87 E-value=3.6e-21 Score=156.23 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=118.9
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCe--e-------------eCCC---CceE----EeeeEEEECCCCCCCCe
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENN--A-------------ILPT---GGSI----YRGSILKIPQITKEDRG 200 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~--~-------------~~~~---~~~~----~~~~~l~i~~~~~~d~g 200 (386)
.+.+.+|++++|.|.+.+. +.+.+.|++... . .... .+.. .....|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 6778999999999999888 888999998421 0 0000 0111 12356999999999999
Q ss_pred EEEEEEecCCC----CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeec
Q psy8823 201 TYYCVAENGVG----KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTN 270 (386)
Q Consensus 201 ~y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~ 270 (386)
.|+|.+.+..+ ........|.|. .+|.+...........|+.++|.|.+.| .|++ .+.|++++.. +..
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~ 166 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTP--ITQ 166 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--C--
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEE--CcC
Confidence 99999998765 123345677777 5566666555555566789999999998 5767 8999999987 332
Q ss_pred CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 271 NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
.................+.|.|.....+|+|.|+|.|.|..+..+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 167 GVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp ------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred ceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 111110000112222345688999999999999999999998776654
No 240
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=154.95 Aligned_cols=165 Identities=16% Similarity=0.260 Sum_probs=108.5
Q ss_pred ccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCc----eeEEec----cceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGS----SLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
|....+.+|++|+|.|.+.+ .+...|.|++++..+. .+..+. .....+ +|+.+. .+++|.|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~ 75 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLA----FIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLS 75 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEE----EEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEEC
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEE----EEecccCCCCceeecCccccccEEEC-----CCeEEEEC
Confidence 45667899999999999875 3446799999863221 011110 011112 233332 24589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCc-cEEEEEEeeee-CCCeEEEEEcCeeeCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ-PVQLECFAGGH-PTPRISWRRENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~~~-~~~~v~W~~~~~~~~~~ 179 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|..++..+...........|. .++|.|.+.+. |.+.++|++++..+..
T Consensus 76 ~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~- 153 (193)
T 2if7_A 76 NLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS- 153 (193)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-
T ss_pred CCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-
Confidence 99999999999999876543 34577888877653221111111233455 79999999885 5789999999876532
Q ss_pred CceEEeeeEEEECCCCCC-CCeEEEEEEecCCCC
Q psy8823 180 GGSIYRGSILKIPQITKE-DRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~ 212 (386)
+..|.|.....+ |+|.|+|.+.|..+.
T Consensus 154 ------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~ 181 (193)
T 2if7_A 154 ------QPNLTVSWDPRISSEQDYTCIAENAVSN 181 (193)
T ss_dssp ------SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred ------CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence 234666544454 899999999998876
No 241
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.86 E-value=3.2e-21 Score=157.98 Aligned_cols=174 Identities=22% Similarity=0.343 Sum_probs=118.5
Q ss_pred eccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecC----------CCcceEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD----------TASSTYTL 98 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~L 98 (386)
.|....+.+|+++.|.|.+.+.+. +.+.|++++.......+. ........+..+.. . ..++.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~L 79 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLA-----SAEMQGSELQVTMHDTRGRSPPYQL-DSQGRL 79 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEE-----EEEEETTEEEEEECCCSCCSSCCEE-CTTCCE
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEE-----eccccCCcccccccccccccccccc-CCCceE
Confidence 355667899999999999998775 789999977543211111 00011111111111 0 112249
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec--CCCceEEEeCCccE-EEEEEe-eeeCCCeEEEEEcCe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD--NSTRSLVVSEGQPV-QLECFA-GGHPTPRISWRRENN 174 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~~g~~v-~l~C~~-~~~~~~~v~W~~~~~ 174 (386)
.|.+++.+|+|.|+|.+.+......+..+.|.|..+|.... ..+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~ 159 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence 99999999999999999987645667888888887753221 12233345578887 999999 899999999999998
Q ss_pred eeCCCC----ceEEe-------------eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 175 AILPTG----GSIYR-------------GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 175 ~~~~~~----~~~~~-------------~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.... ..... ...|.|.....+|.|.|+|.|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 876554 11111 256888766666799999999995
No 242
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.86 E-value=7.9e-21 Score=153.59 Aligned_cols=165 Identities=18% Similarity=0.293 Sum_probs=116.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--ee---eCC---------CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NA---ILP---------TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~~~---------~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.|.+.+.|+|+. .. +.. ..+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3nl4_L 8 PASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECADAATYY 87 (213)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHHCEEEE
Confidence 34567899999999999998888999999853 11 000 111111 2347999999999999999
Q ss_pred EEEecCCCC--ceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEE-
Q psy8823 204 CVAENGVGK--GTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSI- 276 (386)
Q Consensus 204 C~~~~~~~~--~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~- 276 (386)
|.+.+..+. .......+.| ..+|.+........+..|+.++|.|.+.| .|.+.+.|++++.. +........
T Consensus 88 C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~--~~~~~~~~~~ 165 (213)
T 3nl4_L 88 CQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTT--QTTGIENSKT 165 (213)
T ss_dssp EEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEE--CCSSEEEEEC
T ss_pred EecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCcc--CCCCeecccC
Confidence 999987653 2334455555 44566665555556667999999999998 89889999999987 433210111
Q ss_pred -eeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 277 -SHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 277 -~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
...........+.|.|.++..+|+|.|+|.|.
T Consensus 166 ~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 166 PQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred cccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 01111222245789999999999999999999
No 243
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.86 E-value=5.2e-21 Score=155.04 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=114.9
Q ss_pred ccceeeecCCcEEEEEEEe-eCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQ-YAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~-~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
|....+.+|++|+|.|.+. +.+ .+.+.|+|++.......+.............++.... ..++++|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~ 84 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDE 84 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccC
Confidence 5667789999999999954 332 4679999965432111111111110000123444432 34567999999999999
Q ss_pred eEEEEEeEEccc-ceeeeEEEEEEe---cCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCCC-C-
Q psy8823 109 GYYRCQVIIGIN-NKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILPT-G- 180 (386)
Q Consensus 109 G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~-~- 180 (386)
|.|+|.+.+..+ ........|.|. .+|.+....+... ...|+.++|.|.+.+. |++ .++|+++|..+... .
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~ 163 (216)
T 2xzc_L 85 ADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 163 (216)
T ss_dssp EEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred EEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence 999999987654 222334566665 3444433222111 2258899999999884 443 89999999876543 0
Q ss_pred ---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
......+.|.|.++..+|+|.|+|.+.|....
T Consensus 164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 11122347999999999999999999997654
No 244
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=7.1e-21 Score=156.21 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=121.2
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +...+.|+|++..+.... ........|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~ 95 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 95 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence 6889999999999864 456899999997753110 11123567999999999999999999875432 235567777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..... ... .......|.|.+++.+
T Consensus 96 V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~-------~~~~~~~l~I~~v~~~ 162 (242)
T 1p6f_A 96 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRG-------YGKVQAEFPLGPVTTA 162 (242)
T ss_dssp EECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEE-------ECSSEEEEEEEECCGG
T ss_pred eecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----ccc-------CCCceEEEEeCCCccc
Confidence 764 56665443 3457899999999998654 459999999876322 110 0124678999999999
Q ss_pred CCeEEEEEEEcCC---CceeeEEEEEEEecCCCC
Q psy8823 299 QYGSYICRAANKL---GTSEKTVELFESIIPVCP 329 (386)
Q Consensus 299 d~G~Y~C~a~n~~---g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|+|.|.|.. ...+..+.|.|...+..|
T Consensus 163 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 163 HRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp GCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred cCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 9999999999874 234567888888755433
No 245
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=157.47 Aligned_cols=177 Identities=16% Similarity=0.273 Sum_probs=120.0
Q ss_pred EEEeCCccEEEEEEeeeeCC-----CeEEEEEcCeeeC-------------CCCceEE-------eeeEEEECCCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT-----PRISWRRENNAIL-------------PTGGSIY-------RGSILKIPQITKEDR 199 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~-------------~~~~~~~-------~~~~l~i~~~~~~d~ 199 (386)
+.+.+|++++|.|.+.+.+. +.+.|++++.... ...+... ....|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 45778999999999987654 6799999874320 0111111 156799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeE
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~ 275 (386)
|.|+|.+.+... .+..+.|.|..+ |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++++... +.......
T Consensus 85 G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~-~~~~~~~~ 160 (222)
T 4i0k_A 85 GSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVP-LTGNVTTS 160 (222)
T ss_dssp SCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCB-CCSEEEEE
T ss_pred EEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCcc-CCCCccee
Confidence 999999998532 234555666544 4444433 3456789999999999 88999999999854331 22211111
Q ss_pred EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 276 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
.. .........|.|.++..+|.|.|+|.|.|..|....++.|.|...|..
T Consensus 161 --~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 161 --QM-ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp --EE-ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred --EE-cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 11 111123456889999999999999999999999999999999877653
No 246
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.86 E-value=7e-21 Score=153.69 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=123.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------------CCCceE----EeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------------PTGGSI----YRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
.+.+.+|++++|.|.+. +.+.+.|+++. .... ...+.. .....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 67788999999999998 78899999952 2110 011111 1245799999999999999999
Q ss_pred EecCCC-CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeeeecCceeEE-e
Q psy8823 206 AENGVG-KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVLTNNQHYSI-S 277 (386)
Q Consensus 206 ~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~-~ 277 (386)
+.+..+ ........|.|. .+|.+...+.......|+.++|.|.+.|.+ .+.+.|++++.. +........ .
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~ 164 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSP--VKAGVETTTPS 164 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEECCCE
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCee--cCCCcccCCce
Confidence 999876 234556677777 577777666555555799999999999864 468999999987 433211110 1
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..+..++++.
T Consensus 165 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 165 KQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp ECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred ECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 111122234567999999999999999999999987776654
No 247
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.86 E-value=2e-20 Score=155.88 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=125.3
Q ss_pred eeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccc-cccCCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPL-PISTGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+....+.+|++|+|.|.+.+. +...+.|+|.........+ ......... ....|+....+.....++|.|.+
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 92 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS 92 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence 34566779999999999999874 4677999996432211111 011111110 01245666555556677999999
Q ss_pred cCCCCCeEEEEEeEEcc---cceeeeEEEEEEecC-------------CeeecCCCceEEEeCCccEEEEEEeeeeCCC-
Q psy8823 103 IQETDAGYYRCQVIIGI---NNKISAEVDLQVRRP-------------PVISDNSTRSLVVSEGQPVQLECFAGGHPTP- 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~~-------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~- 165 (386)
++.+|+|.|+|.+.+.. .......+.|.|..+ +......+....+.+|++++|.|.+.+.+.+
T Consensus 93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 172 (257)
T 3gkz_A 93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS 172 (257)
T ss_dssp CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG
T ss_pred CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce
Confidence 99999999999998752 122334566777654 1222333556789999999999999887777
Q ss_pred eEEEEEcC--eeeC---C---------CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 166 RISWRREN--NAIL---P---------TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 166 ~v~W~~~~--~~~~---~---------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
.+.|++.. .... . ..+... ....|.|.+++.+|+|.|+|.+.+........-..|.|..
T Consensus 173 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 173 HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 89999842 2111 0 011111 2346999999999999999999875443333334555543
No 248
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.86 E-value=8.4e-21 Score=154.83 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=120.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|+|++.......+ .... +..... ..+|+.+..+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 35566789999999999998765 577999997632211111 1111 111111 1346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~ 176 (386)
++.+|+|.|+|.+.+.........+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|++++..+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 164 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS 164 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence 9999999999999875322223345677764 2433322222 235679999999999886 666 89999998753
Q ss_pred CC--CC-----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 177 LP--TG-----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 177 ~~--~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
.. .. +.....+.|.|.++..+| |.|+|.+.|.... ......+.+..+|
T Consensus 165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~-~~~~~~~~~~~~p 219 (227)
T 1mju_H 165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPT 219 (227)
T ss_dssp TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT-EEEEEECCCCCC-
T ss_pred CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC-cceEEEeCCCCCC
Confidence 11 00 122235679999999888 9999999996554 3344444444444
No 249
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.86 E-value=3.8e-21 Score=159.20 Aligned_cols=181 Identities=15% Similarity=0.297 Sum_probs=116.5
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+.............|+.... ....++|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 80 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI 80 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence 355567778899999999999998776 5789999965322111111110000000134454432 345678999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC-------------eeecCCCceEEEeCCccEEEEEEeeeeC--CC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP-------------VISDNSTRSLVVSEGQPVQLECFAGGHP--TP 165 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~ 165 (386)
.+++.+|+|.|+|.+.+.........+.|.|..++ ..... +....+.+|++++|.|.+.+.+ .+
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~ 159 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKATNYAFTDY 159 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEcCcccCCc
Confidence 99999999999999986543323344567776542 12222 2234588999999999998764 56
Q ss_pred eEEEEEcC--eee------CC-----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 166 RISWRREN--NAI------LP-----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 166 ~v~W~~~~--~~~------~~-----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.|++++ ... .. ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 160 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 160 SMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp CEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 89999964 111 00 111111 1348999999999999999999984
No 250
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.86 E-value=1.6e-20 Score=154.49 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=121.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----e--------CC-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----I--------LP-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~--------~~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++... + .. ..+... ....|.|.+++.+|+|.|+
T Consensus 31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 110 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 110 (237)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence 3456788999999999998888889999984311 0 00 111111 2457999999999999999
Q ss_pred EEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEec-C-CCeeEEEeCCeeeeeecCc--eeEE
Q psy8823 204 CVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAY-P-PPAIVWIKEDTQQVLTNNQ--HYSI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~--~~~~ 276 (386)
|.+.+..+........+.| ..+|.+...........|+.++|.|.+.+. | .+.+.|++++.. +.... ....
T Consensus 111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 188 (237)
T 3sob_L 111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL--QSGNSQESVTE 188 (237)
T ss_dssp EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEEEECC
T ss_pred EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC--CCCceeecccc
Confidence 9998876543334445665 445666655555555568899999999884 4 479999999987 43321 1111
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
...........+.|.|..+..+|+|.|+|.|.|..........+
T Consensus 189 ~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 232 (237)
T 3sob_L 189 QDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232 (237)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred cccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence 11111122335679999999999999999999998765544443
No 251
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.86 E-value=5.2e-21 Score=158.31 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=123.2
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccC--CceeEEe---ccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST--GSSLIIR---DSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~L~i 100 (386)
.+...+....+.+|++|+|.|.+.+.+.+.+.|+|.........+.... +...... .+|+....+ ..++++|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEE
Confidence 3566677788999999999999998888899999954322211111111 1111111 145554432 245779999
Q ss_pred cccCCCCCeEEEEEeEEccc---ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGIN---NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISW 169 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W 169 (386)
.+++.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.++|.|.+.+.+++ .++|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999976432 1233445677763 34433322333334568999999999887665 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| .|.|+|.+.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 9999887542 1222223458888888888 99999999986544
No 252
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.86 E-value=2.7e-20 Score=151.64 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=123.1
Q ss_pred eEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCCC----------------C-----------ceEEeeeEEEECC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILPT----------------G-----------GSIYRGSILKIPQ 193 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~----------------~-----------~~~~~~~~l~i~~ 193 (386)
.+.+..|++++|.|.+.+.+.+ .++|+|++..+... . .......+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 4567899999999999877665 48999987543210 0 0011245799999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCc
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|++.+.|++++.... ...
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~--~~~ 167 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA--KDT 167 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE--EEE
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcccc--CCc
Confidence 99999999999999877765556666777777766655555566677777777775 467778999999887622 111
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
... ..........+.|.|.++..+|+|.|+|.|.|+.|....+..+.+
T Consensus 168 ~~~--~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 168 QEP--GIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ceE--EecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 111 111122223567999999999999999999999987765554443
No 253
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.86 E-value=4e-20 Score=147.90 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-----eEEeeeEEEECCCCCCCCeEEEEEEecCC----CCcee
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGV----GKGTR 215 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~----~~~~~ 215 (386)
..+.+|++++|.|.+.+ +.+.+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.+.. ....+
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 45789999999999964 6779999999876532111 01245679999999999999999997642 12234
Q ss_pred eeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 216 RNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 216 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|++++.. +........ .........|.|
T Consensus 96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~--~~~~~~~~~----~~~~~~~~~L~i 167 (201)
T 1nkr_A 96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEA--HERRLPAGP----KVNGTFQADFPL 167 (201)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCS--SCEEEECEE----EETTEEEEEEEE
T ss_pred CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcc--cCccccccc----ccCCceEEEEEe
Confidence 566777765 355554443 46789999999999875 5679999999876 221111100 011113678999
Q ss_pred eecccCCCeEEEEEEEcCC
Q psy8823 293 ITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~ 311 (386)
.+++ |+|.|+|.|.+..
T Consensus 168 ~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 168 GPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EECC--SCEEEEEEEEETT
T ss_pred CCcC--CCeeEEEEEEcCC
Confidence 9998 9999999999763
No 254
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.86 E-value=9.8e-21 Score=154.24 Aligned_cols=191 Identities=19% Similarity=0.271 Sum_probs=125.2
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeE-----Eeccc-----eeeecCCCcceEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLI-----IRDSR-----FAIRYDTASSTYT 97 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~ 97 (386)
|+...+.+|++|+|.|.+.+.+.+ .|.|+|++........ ...... ....+ .........++++
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFH---PSFGVDFPNSQFSKDRLSFVRARPETNADLRDAT 84 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEE---TTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEe---cccceeeccccccccceeeeccccccccccCcEE
Confidence 345568899999999999876654 3899998765421100 000000 00111 1112233445678
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeee
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAI 176 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~ 176 (386)
|.|.+++.+|+|.|+|.+.+..+........+.+..+|....... ......++.+.+.|.+ .+.|++.+.|++++...
T Consensus 85 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~ 163 (225)
T 4fmk_A 85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQ-EVTIGPQSVAVARCVSTGGRPPARITWISSLGGE 163 (225)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEEC-CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred EEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeeccc-ceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence 999999999999999999887666666666677766665443222 2234556777777766 56788899999987654
Q ss_pred CCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEec
Q psy8823 177 LPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFA 225 (386)
Q Consensus 177 ~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~ 225 (386)
... .+.....+.|.|.++..+|+|.|+|.|.|..+.. ....+.|.|+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH 220 (225)
T ss_dssp EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence 322 1222234579999999999999999999976653 455677777653
No 255
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.85 E-value=2.3e-20 Score=155.87 Aligned_cols=185 Identities=18% Similarity=0.310 Sum_probs=120.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC------CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ------DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
..+.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+...........+.|+.... ....+
T Consensus 4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~ 81 (264)
T 2gjj_A 4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDF 81 (264)
T ss_dssp CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEE
T ss_pred cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEE
Confidence 446677778888899999999999998766 5679999964321111111111000000134554432 24567
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC------------------eeecCCCceEEEeCCccEEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP------------------VISDNSTRSLVVSEGQPVQLECF 158 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~v~l~C~ 158 (386)
+|.|.+++.+|+|.|+|.+.+.........+.|.|..+| .+....+....+.+|++++|.|.
T Consensus 82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~ 161 (264)
T 2gjj_A 82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCK 161 (264)
T ss_dssp EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEE
Confidence 999999999999999999986533223344567777653 11111122346889999999999
Q ss_pred eeeeCC--CeEEEEEcC--ee---eC---C-----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 159 AGGHPT--PRISWRREN--NA---IL---P-----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 159 ~~~~~~--~~v~W~~~~--~~---~~---~-----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+.+.+. +.+.|+++. .. +. . ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 987764 789999974 21 11 0 111111 1458999999999999999999985
No 256
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.85 E-value=5.3e-20 Score=149.34 Aligned_cols=182 Identities=18% Similarity=0.316 Sum_probs=121.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-ceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|+|.........+. .... ..... ..+|+.+..+...++++|.|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 34567799999999999998654 5679999975332111111 1110 10111 1356666655456778999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC--CeEEEEEcC
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT--PRISWRREN 173 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~--~~v~W~~~~ 173 (386)
++.+|+|.|.|.+.+.... .....+.|.|.. +|.+..... ..+.+|+.++|.|.+.+. |. +.++|++++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~ 163 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTL--PPALSSDPVIIGCLIHDYFPSGTMNVTWGKSG 163 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECC--CSSSCCSSEEEEEEEEEEBSCCCEEEEESCCC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeec--ccccCCCcEEEEEEEEeEECCCcEEEEEecCC
Confidence 9999999999999875432 123345777764 233332211 124679999999999887 65 689999998
Q ss_pred eeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 174 NAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 174 ~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..+.. .+......+.|.|.+...+|.|.|+|.+.|..+..
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 164 KDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred EecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 65410 11122234469999999999999999999988763
No 257
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.85 E-value=1.4e-20 Score=157.77 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=122.6
Q ss_pred CceEEEeCCccEEEEEEee---eeCCCeEEEEEcCeeeCCC------------------CceEE------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAG---GHPTPRISWRRENNAILPT------------------GGSIY------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~------------------~~~~~------~~~~l~i~~~ 194 (386)
+..+.+.+|+.++|.|.+. +.+.+.+.|++++...... ..... .+..|.|.++
T Consensus 12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 91 (268)
T 3mj6_A 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91 (268)
T ss_dssp CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence 3456789999999999987 6667789999976432111 11111 1267999999
Q ss_pred CCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE---EecCCCeeEEEeCCeeeeeec
Q psy8823 195 TKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV---EAYPPPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~~~~~~ 270 (386)
+.+|+|.|+|.+.+..+.. ....+.|.|. | ..+....+.+|+.++|.|.+ .+.|.+.+.|++++... ...
T Consensus 92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~-~~~ 165 (268)
T 3mj6_A 92 QKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH-TEE 165 (268)
T ss_dssp CGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC-SSC
T ss_pred CHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC-Ccc
Confidence 9999999999999865442 3445555553 1 13345667889999999999 56788899999953320 000
Q ss_pred CceeEE--------ee----------eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 271 NQHYSI--------SH----------FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 271 ~~~~~~--------~~----------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
...... .. ...........|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 239 (268)
T 3mj6_A 166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239 (268)
T ss_dssp EEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred eeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence 000000 00 000001246789999999999999999999999999999999886544
No 258
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.85 E-value=7.3e-21 Score=152.92 Aligned_cols=166 Identities=12% Similarity=0.173 Sum_probs=114.6
Q ss_pred EeCCccEEEEEEeeeeC----CCeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGHP----TPRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|++++|.|.+.+.+ ...+.|++++..+.... ........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999998874 24899999997664321 112234579999999999999999999987652
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.+.|.|.+.|. |++ .+.|+++|.. +............+......+
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s 172 (207)
T 2vol_A 95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQP--AENYKNTQPIMDTDGSYFVYS 172 (207)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSCEEECCCEECTTSCEEEEE
T ss_pred ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEe--ccCcccCCceECCCCCEEEEE
Confidence 2233333 45667877655444444468999999999985 553 8999999987 332211111111112223345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.|.|.....+|.|.|+|.|.|.....
T Consensus 173 ~l~i~~~~~~~~g~ytC~a~n~~l~~ 198 (207)
T 2vol_A 173 KLNVQKSNWEAGNTFTCSVLHEGLHN 198 (207)
T ss_dssp EEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred EEEECHHHcCCCCEEEEEEECCCCCC
Confidence 67787777889999999999997543
No 259
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.85 E-value=3.5e-20 Score=148.33 Aligned_cols=168 Identities=16% Similarity=0.271 Sum_probs=115.4
Q ss_pred eEEEeCCccEEEEEEee----eeCCCeEEEEEcCeeeCCC------------CceE---EeeeEEEECCCCCCCCeEEEE
Q psy8823 144 SLVVSEGQPVQLECFAG----GHPTPRISWRRENNAILPT------------GGSI---YRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~----~~~~~~v~W~~~~~~~~~~------------~~~~---~~~~~l~i~~~~~~d~g~y~C 204 (386)
.+.+.+|++++|.|.+. +.+.+.+.|++++..+... .+.. .....|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45788999999999985 3466789999998775210 0111 124589999999999999999
Q ss_pred EEecCCCCce----eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEE
Q psy8823 205 VAENGVGKGT----RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI 276 (386)
Q Consensus 205 ~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~ 276 (386)
.+.+..+... ...+.|.|..+ |.+... ....|+.+.|.|.+. |+|.|.+.|++++.. +...... .
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~--l~~~~~~-~ 155 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEE--LNAINTT-V 155 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCE--ECCSEEE-E
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEE--Cccccce-E
Confidence 9999765432 35667777665 333321 124588999999995 999999999999877 4432211 1
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.. ...........+..+..+|.|.|+|.|.|..|..++.+.+
T Consensus 156 ~~--~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 156 SQ--DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EE--CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred Ee--cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 11 1110111222344556789999999999999998887765
No 260
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.85 E-value=2.8e-21 Score=157.36 Aligned_cols=195 Identities=21% Similarity=0.323 Sum_probs=122.5
Q ss_pred cceeeecCCcEEEEEEEeeCCC-----CcEEEEecCCccccccccccCCcee-EEeccceeeec-CCCcceEEEEEcccC
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQD-----YPVIWMKVDRNKVTEPLPISTGSSL-IIRDSRFAIRY-DTASSTYTLLVKDIQ 104 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~L~i~~~~ 104 (386)
++..+.+|++++|.|.+.+.+. ..+.|++++.... ......+... ....+++.+.. +...++++|.|.+++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~--i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 80 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQL--VHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR 80 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCE--EEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCC
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccE--EEEEcCCcccccceeCcEEEecccccCCeEEEEECCcc
Confidence 3456889999999999886643 5699999875431 1111111111 11123333322 123346689999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+|+|.|+|.+.+.. ..+..+.|.|..+ |.+.... ...+.+|+.++|.|.+ .+.|.+.+.|++++.......
T Consensus 81 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~ 156 (222)
T 4i0k_A 81 VTDEGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTLEP--NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN 156 (222)
T ss_dssp GGGCSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred cccCEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEeCC--CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence 999999999998753 2345556666654 3443322 2357789999999999 888999999999544333222
Q ss_pred ceE-E---e---eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCC
Q psy8823 181 GSI-Y---R---GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233 (386)
Q Consensus 181 ~~~-~---~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~ 233 (386)
... . . ...|.|.+++.+|.|.|+|.+.|..+. ....+.|.|..+|....+..
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~ 215 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ-QDAHGSVTITGQPLTFPPET 215 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCC---------
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC-CceEEEEEEeCCccccCCcc
Confidence 111 1 1 124789999999999999999999887 67788888888776544433
No 261
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.85 E-value=4.1e-20 Score=149.72 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=116.8
Q ss_pred CceEEEeCCccEEEEEEe-eeeC-CCeEEEEEcCe--eeC-----------C-CCceEE----eeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHP-TPRISWRRENN--AIL-----------P-TGGSIY----RGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~-~~~v~W~~~~~--~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+ .+.+ .+.+.|++++. ... . ..+... ....|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 456778999999999995 4443 57899999642 110 0 111111 13479999999999999
Q ss_pred EEEEEecCCC-CceeeeEEEEEE---ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeE
Q psy8823 202 YYCVAENGVG-KGTRRNIAVEVE---FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 202 y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~ 275 (386)
|+|.+.|..+ ........|.|. .+|.+....+......|+.++|.|.+.| .|++ .+.|++++.. +.......
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~ 164 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL--QSGNSQES 164 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEEE
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCee--cCCCeeEe
Confidence 9999999765 222234456664 4566665444333446889999999998 5554 8999999987 43331111
Q ss_pred E--eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 276 I--SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 276 ~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
. ...........+.|.|..+..+|+|.|+|.|.|..........
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 210 (216)
T 2xzc_L 165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS 210 (216)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEe
Confidence 1 1111111223558999999999999999999999866543333
No 262
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.85 E-value=2e-21 Score=156.97 Aligned_cols=173 Identities=19% Similarity=0.304 Sum_probs=118.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++. ..+. . ..+... ....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 45667899999999999988877789999853 2220 0 111111 2347999999999999999
Q ss_pred EEEecCCCC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeE
Q psy8823 204 CVAENGVGK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 204 C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~ 275 (386)
|.+.|.... .......+.|. .+|.+...........|+.++|.|.+.|. |+ +.+.|++++.. +.......
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~ 163 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGAT--INDGVKTT 163 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEE--ECSSCBCC
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeE--cCCCeecC
Confidence 999973221 11233455553 45666655555555679999999999987 54 69999999987 43322110
Q ss_pred -EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 276 -ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 276 -~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
....... ....+.|.|.++..+|+|.|+|.|.|..+..+.+
T Consensus 164 ~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (212)
T 1nfd_E 164 KPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS 205 (212)
T ss_dssp CCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred CceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence 0001111 2235679999999999999999999998765443
No 263
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.85 E-value=9.8e-21 Score=156.53 Aligned_cols=185 Identities=17% Similarity=0.288 Sum_probs=120.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCC-cee-EEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG-SSL-IIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+...+....+.+|++|+|.|.+.+.+.+.+.|+|.........+....+ ... ....+|+.+..+ ..++++|.|.+++
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~ 82 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKKLL 82 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESSCC
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECCCC
Confidence 5556677889999999999999987888999999543221111111110 000 111245544433 2467799999999
Q ss_pred CCCCeEEEEEeEEc-----ccceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 105 ETDAGYYRCQVIIG-----INNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~-----~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+.+|+.++|.|.+.+. |++ .++|++
T Consensus 83 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k 162 (245)
T 3nfj_J 83 LSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWV 162 (245)
T ss_dssp GGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEE
Confidence 99999999999872 222333445677765 34333222222223458999999999885 434 689999
Q ss_pred cCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 172 ENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+|..+... +........|.|.....+| .|.|+|.+.|....
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~ 219 (245)
T 3nfj_J 163 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp TTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCC
Confidence 99887542 2222234578888888888 66999999986543
No 264
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.85 E-value=3.7e-21 Score=155.91 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=114.5
Q ss_pred EeCCccEEEEEEeeee---CC-CeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PT-PRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|++++|.|.+.+. |+ +.++|+|++..+.... ........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 5689999999999887 33 6899999997764321 112234579999999999999999999976642
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.++|.|.+.| +|++ .+.|++++.. +............+......+
T Consensus 103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~gt~~~~s 180 (218)
T 2rgs_A 103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHT--EENYKDTAPVLDSDGSYFIYS 180 (218)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEE
T ss_pred cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEe--ccCceecccEECCCCCEEEEE
Confidence 2233322 4556777765444433346999999999998 5766 8999999987 332211111111112222345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.|.|.....+|.|.|+|.|.|......
T Consensus 181 ~l~v~~~~~~d~g~YtC~a~n~~l~~~ 207 (218)
T 2rgs_A 181 KLNMKTSKWEKTDSFSCNVRHEGLKNY 207 (218)
T ss_dssp EEEEEHHHHHHCSCEEEEEECTTSGGG
T ss_pred EEEECHHHcCCCCeEEEEEEcCCCCCc
Confidence 577777777789999999999876543
No 265
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.85 E-value=1.4e-21 Score=157.98 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=117.5
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|....+.+|++|+|.|.+.+.+.+.+.|+|+........+.............++.... ...+.+|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 83 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA 83 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEE
Confidence 66677999999999999877766779999965322111111111000000123444332 3356689999999999999
Q ss_pred EEEEeEEcccc--eeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCeeeCCCCce
Q psy8823 111 YRCQVIIGINN--KISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENNAILPTGGS 182 (386)
Q Consensus 111 Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~ 182 (386)
|+|.+.+.... .......|.|. .+|.+....+.. .+.+|+.++|.|.+.+. |+ +.++|++++..+......
T Consensus 84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 162 (212)
T 1nfd_E 84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSP-EELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT 162 (212)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCH-HHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCch-HhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence 99999862221 22334456663 345444332221 23468999999999887 44 699999999887543210
Q ss_pred ---------EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 183 ---------IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 183 ---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+.|.|.++..+|+|.|+|.|.|....
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 222456899999999999999999997654
No 266
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.85 E-value=2.7e-20 Score=151.14 Aligned_cols=173 Identities=17% Similarity=0.326 Sum_probs=116.6
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC------C-----------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL------P-----------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-----------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. . ..+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (219)
T 1c1e_H 8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK 87 (219)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence 345688999999999998764 6789999973 3221 0 011111 13589999999
Q ss_pred CCCCeEEEEEEecCCCC---ceeeeEEEEEEec----ceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeee
Q psy8823 196 KEDRGTYYCVAENGVGK---GTRRNIAVEVEFA----PVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQ 266 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~ 266 (386)
.+|+|.|+|.+.+..+. .......|.|... |.+....+...+.+|+.++|.|.+.| +|.| .+.|++++..+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 167 (219)
T 1c1e_H 88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 167 (219)
T ss_dssp GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred cccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence 99999999999987632 1223456666553 55554444445678999999999998 8998 99999998752
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
........ . ........+.|.|..... |.|.|+|.|.|..|.......|
T Consensus 168 ~~~~~~~~--~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 168 GVHTFPAV--L--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp TEEECCCE--E--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred ceEecCCc--c--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence 11111100 0 011222356788854444 5599999999999887665554
No 267
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.85 E-value=8.9e-21 Score=159.15 Aligned_cols=188 Identities=16% Similarity=0.257 Sum_probs=121.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L 98 (386)
....+...+....+.+|++|+|.|.+.+ +...+.|+|.........+............ +|+.... ...++++|
T Consensus 26 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL 103 (270)
T 3qib_D 26 GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC-PSNSPCSL 103 (270)
T ss_dssp --CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC-CTTSCEEE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe-CCCcEEEE
Confidence 3456667777788999999999999864 6678999995433211111111111111111 1555544 23567899
Q ss_pred EEcccCCCCCeEEEEEeEEcc---cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGI---NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RI 167 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v 167 (386)
.|.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+....+....+..|+.++|.|.+.+ .|.+ .+
T Consensus 104 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 183 (270)
T 3qib_D 104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 183 (270)
T ss_dssp EESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred EECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEE
Confidence 999999999999999998532 12233445677765 3433322222222345899999999988 5555 79
Q ss_pred EEEEcCeeeCCCC---------------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 168 SWRRENNAILPTG---------------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 168 ~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+|+++|..+.... ........|.|.+...+| +|.|+|.+.|....
T Consensus 184 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 184 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp EEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 9999998875421 222234567888887777 99999999986543
No 268
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.85 E-value=4.6e-20 Score=154.53 Aligned_cols=185 Identities=16% Similarity=0.308 Sum_probs=116.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
..+.+...|....+.+|++|+|.|.+.+.+ ...+.|+++........+...........+.|+.... ...+++
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~ 91 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFT 91 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEE
Confidence 345677777788899999999999998765 4779999975322111111111000000134554432 235679
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe----------------------eecCCCceEEEeCCccEEE
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV----------------------ISDNSTRSLVVSEGQPVQL 155 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~----------------------~~~~~~~~~~~~~g~~v~l 155 (386)
|.|.+++.+|+|.|+|.+.+...........|.|..++. +....+....+.+|++++|
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 999999999999999999865332223344566654321 0111123457889999999
Q ss_pred EEEeeeeCC--CeEEEEEcC--eeeC-------------------CCCceEEe------eeEEEECCCCCCCCeEEEEEE
Q psy8823 156 ECFAGGHPT--PRISWRREN--NAIL-------------------PTGGSIYR------GSILKIPQITKEDRGTYYCVA 206 (386)
Q Consensus 156 ~C~~~~~~~--~~v~W~~~~--~~~~-------------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~ 206 (386)
.|.+.+.++ +.+.|+++. .... ........ ...|.|.+++.+|+|.|+|.+
T Consensus 172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 251 (268)
T 1x9q_A 172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251 (268)
T ss_dssp EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence 999987653 789999853 2210 01111111 257999999999999999999
Q ss_pred ecC
Q psy8823 207 ENG 209 (386)
Q Consensus 207 ~~~ 209 (386)
.+.
T Consensus 252 ~~~ 254 (268)
T 1x9q_A 252 ASY 254 (268)
T ss_dssp EET
T ss_pred ccC
Confidence 874
No 269
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.85 E-value=2.4e-21 Score=155.04 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=107.6
Q ss_pred EeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--
Q psy8823 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF-- 224 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-- 224 (386)
+.+|++++|.|.+ |.+.++|+|+|..+... ...+..|.|.+++.+|+|.|+|.+.+... ..+.+.+..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s----~~~~v~v~~~~ 84 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNKS----KPLQVYYRMGS 84 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSCC----CCEEEEEEC--
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCCC----eeEEEEEEEec
Confidence 3579999999998 77899999999877432 11346799999999999999999765322 234444430
Q ss_pred -----------------------------cceEeeCCCccccc-CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 225 -----------------------------APVITVPKPRLGQA-LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 225 -----------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
++.+.. .+ ..+. +|++++|.|. |.|.|.+.|++++..+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~ 160 (204)
T 1sy6_A 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ-TP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN 160 (204)
T ss_dssp ----------------------------------C-CC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTT
T ss_pred cccccccccccccccccccccccccccccccceec-CC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCce
Confidence 111111 11 2233 8999999999 888899999999987322111111
Q ss_pred EEeeeeecCceeeeEEEEeec-ccCCCeEEEEEEEcCCCce-eeEEEEEE
Q psy8823 275 SISHFATADEFTDTTIRVITI-EKRQYGSYICRAANKLGTS-EKTVELFE 322 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 322 (386)
.. ...+.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 161 ~~--------~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 161 IG--------SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EE--------EETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred Ee--------cCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 10 13678999999 9999999999999999963 45555554
No 270
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.85 E-value=4.9e-20 Score=152.98 Aligned_cols=172 Identities=20% Similarity=0.306 Sum_probs=116.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcCe--ee---C--------C-CCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRRENN--AI---L--------P-TGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~~--~~---~--------~-~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++. .. . . ..+... ....|.|.+++.+|
T Consensus 41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 120 (252)
T 3bkj_L 41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED 120 (252)
T ss_dssp CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence 3456788999999999998877 57899999652 10 0 0 111111 12379999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCce
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~ 273 (386)
+|.|+|.+.+..+........+.|.. +|.+...+.......|+.++|.|.+.|. |++ .+.|++++.. +.....
T Consensus 121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~ 198 (252)
T 3bkj_L 121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVL 198 (252)
T ss_dssp CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE--ECSSEE
T ss_pred CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCee--cCCCee
Confidence 99999999987553233334566653 4666654444444578999999999984 544 7999999987 433311
Q ss_pred eEEee--eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 274 YSISH--FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 274 ~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..... .........+.|.|.++..+|+|.|+|.|.|......
T Consensus 199 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 199 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred eecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence 11111 1111122456799999999999999999999876543
No 271
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.85 E-value=3.5e-21 Score=151.93 Aligned_cols=145 Identities=21% Similarity=0.350 Sum_probs=103.3
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc-cCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD-IQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~ 112 (386)
.++.+|++++|.|.+.+ ...|.|+|++..+... .+.+|.|.+ ++.+|+|.|+
T Consensus 9 ~v~~~G~~v~L~C~~~~--~~~i~W~k~g~~l~~~-------------------------~~~~L~I~~~~~~~D~G~Y~ 61 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS--DENLKWEKNGQELPQK-------------------------HDKHLVLQDFSEVEDSGYYV 61 (186)
T ss_dssp EEEEETTEEEEECSSCC--CTTCEEEETTEEECSC-------------------------CCSEEEEESCCTTTSCEEEE
T ss_pred EEEeCCcEEEEEEeCCC--CCceEEEECCEECCCC-------------------------CCCEEEECCCCccccCEEEE
Confidence 34578999999999976 3359999988654110 112799999 9999999999
Q ss_pred EEeEEcccceeeeEEEEEEec--CCeee-------------------cCCCce---EEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 113 CQVIIGINNKISAEVDLQVRR--PPVIS-------------------DNSTRS---LVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~--~p~~~-------------------~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
|.+.|..+. .+..+.+.|.. ++... ...... ..+.+|+.+.|.|.+ |.+.++
T Consensus 62 C~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~ 137 (186)
T 1jbj_A 62 CYTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIK 137 (186)
T ss_dssp EECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEE
T ss_pred EEEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEE
Confidence 999876444 33333333322 22100 000001 123489999999988 788999
Q ss_pred EEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 169 WRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 169 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+|++..+..... ....|.|.++..+|+|.|+|.|.|..+.
T Consensus 138 W~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 138 WLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp EEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred EEECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 9999998764332 4667999999999999999999998765
No 272
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.85 E-value=4.7e-21 Score=155.84 Aligned_cols=190 Identities=17% Similarity=0.284 Sum_probs=125.7
Q ss_pred ccceeeecCCcEEEEEEEee-CCCC----cEEEEecCCccccccccccCCceeEEeccceeeecC---CCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQY-AQDY----PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD---TASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~-~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~ 102 (386)
+....+.+|++|+|.|.+.+ .+.+ .+.|++++....-.... ..........+|+.+..+ ...++++|.|.+
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH-QTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEE-ESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEE-CCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 34556889999999999854 3333 39999986432111100 111111111344444331 123567999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccE-EEEEEee-eeCCCeEEEEEcCeeeCCC-
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV-QLECFAG-GHPTPRISWRRENNAILPT- 179 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v-~l~C~~~-~~~~~~v~W~~~~~~~~~~- 179 (386)
++.+|+|.|+|.+.+......+..+.|.|..+|.+........ .+|+.+ .|.|.+. +.|.+.++|++++......
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~--~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~ 162 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ--LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTS 162 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC--CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCE
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc--cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccc
Confidence 9999999999999886544557778888888887654322221 568888 4999986 8899999999875443221
Q ss_pred ------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 180 ------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 180 ------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
.......+.|.|.++..+|.|.|+|.+.|.... ....+.|.+.|
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~---~~~~~~v~~~~ 212 (221)
T 3eow_R 163 QVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFE---KPQLLTVSLTV 212 (221)
T ss_dssp EECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSS---SCEEEEECCCC
T ss_pred eeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCC---CCeEEEEEEEE
Confidence 111223467999999999999999999997765 34555665554
No 273
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=155.13 Aligned_cols=184 Identities=16% Similarity=0.294 Sum_probs=109.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-c-CCceeEEe---ccceeeecCCCcceEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-S-TGSSLIIR---DSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~L~ 99 (386)
|.+...+....+.+|++|+|.|.+.+.+.+.+.|+|.........+.. . ........ ..++....+.....++|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 456666778889999999999999888878899999543221111111 1 01100011 112222233445566899
Q ss_pred EcccCCCCCeEEEEEeEEcccc--eeeeEEEEEEecCC----------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 100 VKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP----------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p----------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
|.+++.+|+|.|+|.+.+..+. .......|.|..++ ......+..+.+.+|++++|.|.+.+
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 162 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET 162 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence 9999999999999999875432 33445667776531 12233455678999999999998876
Q ss_pred e-CCCeEEEEEcCe--eeCC------------CCceEE------eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 162 H-PTPRISWRRENN--AILP------------TGGSIY------RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 162 ~-~~~~v~W~~~~~--~~~~------------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
. +.+.+.|++.+. .... ..+... ....|.|.+++.+|+|.|+|.+.+
T Consensus 163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 4 778999998542 1100 001111 134699999999999999999975
No 274
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.85 E-value=2.8e-20 Score=151.04 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=116.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ .+.+.|+|++.......+ .... +..... ..+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 45666789999999999998764 577999997522111101 1110 010100 1345555444345577999999
Q ss_pred cCCCCCeEEEEEeEEcccc---eeeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcC
Q psy8823 103 IQETDAGYYRCQVIIGINN---KISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRREN 173 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~ 173 (386)
++.+|+|.|+|.+.+..+. .....+.|.|... |.+....+. ..+.+|+.++|.|.+.+ .|.+ .++|++++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCC-SSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCc-cccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999976421 2234566777653 333322111 12457999999999988 7888 99999998
Q ss_pred eeeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+... .......+.|.|..... |+|.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~ 209 (219)
T 1c1e_H 165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASS 209 (219)
T ss_dssp BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGT
T ss_pred cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCC
Confidence 753110 01112345688855444 669999999997665
No 275
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.84 E-value=1.3e-19 Score=147.42 Aligned_cols=181 Identities=20% Similarity=0.318 Sum_probs=118.9
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-ceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+.+ ...+.|+|+........+. ...+ ..... .++|+.+..+...++++|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567799999999999998654 3679999975322111111 1111 10111 13566665554556789999999
Q ss_pred CCCCCeEEEEEeEEccc---c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE-
Q psy8823 104 QETDAGYYRCQVIIGIN---N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR- 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~- 171 (386)
+.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 99999999999986531 1 122345777763 33333211111 24579999999999887 666 899999
Q ss_pred cCeeeCCC--------CceEEeeeEEEECCCCC--CCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT--------GGSIYRGSILKIPQITK--EDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~ 212 (386)
+|..+... .......+.|.|..... +|.|.|+|.+.|..+.
T Consensus 166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~ 216 (223)
T 1dee_B 166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN 216 (223)
T ss_dssp TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence 88766430 11222345688888876 7899999999998876
No 276
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.84 E-value=1.6e-20 Score=152.82 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=118.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCc---eeEE---eccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGS---SLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~---~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++++|.|.+.+.+ ...+.|+|+........+. ..... .... ..+|+.+..+...++++|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 34566789999999999998754 5679999965332111110 10000 0000 13456555444456789999
Q ss_pred cccCCCCCeEEEEEeEEcccc----eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINN----KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+. .......|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|+
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~ 164 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWN 164 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEEccEECCCCEEEEe
Confidence 999999999999999865421 222345666654 33333221111 24579999999999886 777 99999
Q ss_pred EcCeeeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+++..+... .+.....+.|.|.++..+| |.|+|.+.|..+.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~ 212 (222)
T 1q9r_B 165 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 212 (222)
T ss_dssp GGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence 998654221 1112224578999999999 9999999998775
No 277
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=154.48 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=114.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+....+.+|++|+|.|.+.+. +.+.+.|+|+........+....+.......+++.... ....++|.|.+++.+|+
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDE 86 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhC
Confidence 445678999999999999876 67789999965332211111111111111234554432 23567899999999999
Q ss_pred eEEEEEeEEcccc--eeeeEEEEEEecCCee-------------------ecCCCceEEEeCCccEEEEEEeeeeC--CC
Q psy8823 109 GYYRCQVIIGINN--KISAEVDLQVRRPPVI-------------------SDNSTRSLVVSEGQPVQLECFAGGHP--TP 165 (386)
Q Consensus 109 G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~~-------------------~~~~~~~~~~~~g~~v~l~C~~~~~~--~~ 165 (386)
|.|+|.+.+..+. .....+.|.|..++.. ....+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 9999999875332 2334566777655411 11112334588999999999998766 67
Q ss_pred eEEEEEcC--eee------CCCC-----------ceEE------eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 166 RISWRREN--NAI------LPTG-----------GSIY------RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 166 ~v~W~~~~--~~~------~~~~-----------~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.|+++. ..+ .... +... ....|.|.+++.+|+|.|+|.+.|..
T Consensus 167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 89999873 221 0000 1111 13359999999999999999999864
No 278
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.84 E-value=3.6e-20 Score=152.66 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=119.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe---ccceeeecCCCcceEEEEEcc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+...+....+.+|++|+|.|.+.+ +...+.|+|.........+....+...... .+|+....+ ..++++|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~ 81 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA 81 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence 3556667778999999999999874 667899999543322111111111111111 245555443 35678999999
Q ss_pred cCCCCCeEEEEEeEE--cccceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEc
Q psy8823 103 IQETDAGYYRCQVII--GINNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRE 172 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~--~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~ 172 (386)
++.+|+|.|+|.+.+ ...........|.|.. +|.+....+....+.+|+.++|.|.+.+ .|.+ .+.|+++
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999973 2222334445666652 3433332222223446899999999988 4545 7999999
Q ss_pred CeeeCCCCce-----------EEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 173 NNAILPTGGS-----------IYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~~~~~~~~-----------~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
|..+...... ....+.|.|.+...+| .|.|+|.+.|....
T Consensus 162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 9887543211 1123458899988888 67999999986543
No 279
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=144.32 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=111.2
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeC---CCC---------------ce-EEeeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAIL---PTG---------------GS-IYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~---------------~~-~~~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+.+ .+.+.+.|++++..+. ... +. ...+..|.|.+++.+|+|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~ 84 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence 45667889999999999865 4456899999876442 100 00 1124679999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecce---EeeCCCcccccCCC-cEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEE
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPV---ITVPKPRLGQALQY-DMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSI 276 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~ 276 (386)
|+|.+.+..+. ....+.|.|..++. +.... .....|. .++|.|.+.|. |.|.+.|++++.. +..
T Consensus 85 Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~--l~~------ 153 (193)
T 2if7_A 85 YRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNT--LSS------ 153 (193)
T ss_dssp EEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEE--EES------
T ss_pred EEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEE--cCC------
Confidence 99999998775 34577888876542 33222 1223455 89999999985 4789999999875 321
Q ss_pred eeeeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCceeeEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
...|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus 154 ----------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 154 ----------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp ----------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred ----------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 234666554554 899999999999998866543
No 280
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.84 E-value=3.4e-20 Score=153.28 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=121.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i 100 (386)
+.+...+....+.+|++|+|.| ..+.+...+.|+|.........+....+......+ +|+....+ ..++++|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I 80 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKI 80 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEE
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEE
Confidence 3456667778899999999999 55567788999994332211111111111111111 56665543 356789999
Q ss_pred cccCCCCCeEEEEEeEEcc---cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCC-C-eEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGI---NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT-P-RISW 169 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~-~v~W 169 (386)
.+++.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 9999999999999998532 22334455677763 4443332222223456899999999988544 4 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| .|.|+|.+.|....
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 9999887542 1222234568888888888 89999999986543
No 281
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.84 E-value=3.3e-21 Score=158.13 Aligned_cols=169 Identities=18% Similarity=0.308 Sum_probs=96.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee-----------CC-CCc----eEEeeeEEEECCCCCCCCeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI-----------LP-TGG----SIYRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~-----------~~-~~~----~~~~~~~l~i~~~~~~d~g~y~C 204 (386)
..+.+.+|++++|.|.+.+.+.+.+.|++++. .. .. ..+ .......|.|.+++.+|+|.|.|
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 110 (233)
T 3bqu_C 31 ASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYC 110 (233)
T ss_dssp SBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEE
T ss_pred CeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEE
Confidence 34567899999999999888878899998642 11 00 001 11223479999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecC-CC-eeEEEeCCeeeeeecCceeEEe--
Q psy8823 205 VAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYP-PP-AIVWIKEDTQQVLTNNQHYSIS-- 277 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~-~~~W~~~~~~~~~~~~~~~~~~-- 277 (386)
.+.+..+........+.|.. +|.+...++......|+.++|.|.+.|.+ ++ .+.|++++.. +.........
T Consensus 111 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~~ 188 (233)
T 3bqu_C 111 LQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQ 188 (233)
T ss_dssp EECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-------CCEEEEECCC
T ss_pred EEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee--CCCCceEecCCc
Confidence 99886553222233455543 56666544444445799999999999854 44 7999999877 4332111110
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..........+.|.|..+..+|+|.|+|.|.|....
T Consensus 189 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 189 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp CTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 111111224567999999999999999999998654
No 282
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.84 E-value=8.7e-20 Score=148.32 Aligned_cols=181 Identities=18% Similarity=0.277 Sum_probs=119.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC---ceeE---EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG---SSLI---IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~---~~~~---~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|.........+. ...+ .... ...+|+.+..+...++++|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 34566789999999999998643 4679999865432211111 1110 1111 113566666555567889999
Q ss_pred cccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeee-eCC--CeEEEEEc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGG-HPT--PRISWRRE 172 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~--~~v~W~~~ 172 (386)
.+++.+|+|.|.|.+.+... ........|.|.. +|.+....+... .+|+.++|.|.+.+ .|. +.+.|+++
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~ 163 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES 163 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence 99999999999999986531 2233445666652 233321111111 57999999999987 565 38999998
Q ss_pred CeeeC---------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 173 NNAIL---------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~~~---------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..+. .........+.|.|.+...+|+|.|+|.+.|..+.
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 87652 12223333457999999999999999999997755
No 283
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.84 E-value=1.8e-19 Score=148.54 Aligned_cols=184 Identities=17% Similarity=0.264 Sum_probs=119.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCceeEE----eccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGSSLII----RDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~L~ 99 (386)
+...+....+.+|++|+|.|.+.+. +...+.|+|+........+.. ..+..... .++|+.+..+...++++|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4555667779999999999999865 567799999653221111111 11111111 2456665544444678999
Q ss_pred EcccCCCCCeEEEEEeEEccc------ceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeee-CC-
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN------NKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGH-PT- 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~- 164 (386)
|.+++.+|+|.|.|.+.+... ......+.|.|... |......+....+.+|+.++|.|.+.+. |.
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~ 163 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDV 163 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCC
T ss_pred ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCC
Confidence 999999999999999987531 11223467777653 3222222222234569999999999887 54
Q ss_pred CeEEEEEcCe-eeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 165 PRISWRRENN-AILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 165 ~~v~W~~~~~-~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.++|++++. .+.... +.......|.|.+... + |.|+|.+.|..+.
T Consensus 164 ~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~ 218 (242)
T 1hxm_B 164 IKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNK 218 (242)
T ss_dssp EEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSG
T ss_pred eEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCC
Confidence 6899999987 443221 1122345788888765 4 9999999998775
No 284
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.84 E-value=2.2e-20 Score=151.09 Aligned_cols=164 Identities=19% Similarity=0.294 Sum_probs=113.1
Q ss_pred CceEEEeCCccEEEEEEeeee-------CCCeEEEEEcCeee-----CC------------CCceEE------eeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-------PTPRISWRRENNAI-----LP------------TGGSIY------RGSILKI 191 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~-----~~------------~~~~~~------~~~~l~i 191 (386)
+..+.+.+|++++|.|.+.+. +.+.+.|++++... .. ..+... ...+|.|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 86 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI 86 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence 456778999999999998754 46789999986531 10 011111 1347999
Q ss_pred CCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEec----CCCeeEEEe
Q psy8823 192 PQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAY----PPPAIVWIK 261 (386)
Q Consensus 192 ~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~~ 261 (386)
.+++.+|+|.|.|.+.+..+... ...+.|.|... |.+..+ ..+.+|+.++|.|.+.+. |.|.+.|++
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~---~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~ 163 (214)
T 2zg1_A 87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL---EPLESGRPTRLSCSLPGSCEAGPPLTFSWTG 163 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEES
T ss_pred ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC---ccccCCCeEEEEEEeccCCCCCCCceEEEeC
Confidence 99999999999999998753211 24677777763 444332 136689999999999764 788999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELF 321 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~ 321 (386)
++.. .... .....+.|.|..+..+|+|.|+|.|.|..+... +++.|.
T Consensus 164 ~~~~--~~~~-----------~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 164 NALS--PLDP-----------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp STTS--SSCS-----------SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCCc--cCCC-----------CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 9865 2111 112467899999999999999999999875544 444443
No 285
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.84 E-value=2.6e-20 Score=151.91 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=116.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----C------------CCceEE------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----P------------TGGSIY------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~------------~~~~~~------~~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++ .... . ..+... ....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 3456788999999999998765 5789999864 2110 0 111111 1358999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeee
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVL 268 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~ 268 (386)
+.+|+|.|.|.+.+...........|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~ 166 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 166 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence 999999999999986322122344666654 3555443333345679999999999985 777 9999999875211
Q ss_pred ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
....... ........+.|.|.++..+| |.|+|.|.|..+.......+.+..+|
T Consensus 167 ~~~~~~~----~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 167 HTFPAVL----QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT 219 (227)
T ss_dssp EECCCEE----ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred EECCcee----cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence 1111110 01112245689999998888 99999999988877777766555444
No 286
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.84 E-value=4.7e-19 Score=139.80 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=119.0
Q ss_pred eEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
.+.+..|++++|.|.+ +.|.+ .|.|++.+..+ ...........|.|.+++.+|+|.|.|.+.|..+. ....+.|.
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~lt 92 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLL 92 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-CcEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEE
Confidence 3678899999999999 88777 99999865443 11111223568999999999999999999998765 66789999
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEec-CC----CeeEEEeCCeeeeeecCceeE--Ee-------eeeecCceee
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP----PAIVWIKEDTQQVLTNNQHYS--IS-------HFATADEFTD 287 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~----~~~~W~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~ 287 (386)
|+.+|......+. ....|+.+ |.|.+.+. |. +++.|++++.. +....... .. ..........
T Consensus 93 V~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~--L~~~~~~~~~~~~~~~~~~~~~~~~~~vt 168 (210)
T 1gsm_A 93 VYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQE--LEGAQALGPEVQEEEEEPQGDEDVLFRVT 168 (210)
T ss_dssp EEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEE--CTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred EEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEE--cccccccccceecccccccCCcceEEEEE
Confidence 9998864432222 56677888 99999985 64 48999999988 43322111 10 0111223345
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
++|.+.....+|.+.|+|.|.+..-.....
T Consensus 169 s~~~~~~~~~D~~~~~tC~a~~~L~~~~~~ 198 (210)
T 1gsm_A 169 ERWRLPPLGTPVPPALYCQATMRLPGLELS 198 (210)
T ss_dssp EEEECCCCCSSCCSEEEEEEEEEETTEEEE
T ss_pred EEEeecCCcccCCceEEEEEEeeCCCCccc
Confidence 667777778888899999999987444433
No 287
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.84 E-value=5.1e-20 Score=149.62 Aligned_cols=181 Identities=20% Similarity=0.341 Sum_probs=118.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC--Cc--eeE--EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST--GS--SLI--IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~--~~--~~~--~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|++.......+. ... +. ... ...+|+.+..+...++++|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35667799999999999998765 5779999975321111111 100 00 000 012455554444456779999
Q ss_pred cccCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEc
Q psy8823 101 KDIQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRE 172 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~ 172 (386)
.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|+++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 164 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVTVKWNYG 164 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence 999999999999999875422 112345677763 3433322211 124679999999999887 878 9999998
Q ss_pred Cee----eCCC---CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 173 NNA----ILPT---GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~----~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.. .... .......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 210 (220)
T 1pz5_B 165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK 210 (220)
T ss_dssp TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence 863 1111 0222345679999988866 9999999998775
No 288
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.83 E-value=8.3e-19 Score=143.43 Aligned_cols=182 Identities=20% Similarity=0.289 Sum_probs=115.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++....+.+|++|+|.|.+.+.+ ...+.|||.........+. ...+..... ..+|+....+...++++|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34566789999999999998654 5679999975332111111 111111111 13566665544556789999999
Q ss_pred CCCCCeEEEEEeEEccc--c---eeeeEEEEEEec----CCeeecCCCceEEEeCC-ccEEEEEEeeee-CCC-eEEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN--N---KISAEVDLQVRR----PPVISDNSTRSLVVSEG-QPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g-~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.. .+..| +.++|.|.+.+. |.+ .++|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~ 164 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKY 164 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence 99999999999973111 1 222345777765 23333211111 23467 899999999876 665 999999
Q ss_pred -cCeeeCCC--------CceEEeeeEEEECCCCC--CCCeEEEEEEecCCCC
Q psy8823 172 -ENNAILPT--------GGSIYRGSILKIPQITK--EDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 -~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~ 212 (386)
+|..+... .......+.|.|.+... +|.|.|+|.+.|..+.
T Consensus 165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~ 216 (232)
T 1dn0_B 165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 216 (232)
T ss_dssp TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence 88776430 11222345789998887 8899999999998776
No 289
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.83 E-value=9.7e-20 Score=153.40 Aligned_cols=181 Identities=15% Similarity=0.259 Sum_probs=119.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccC--CceeE---EeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIST--GSSLI---IRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~L~ 99 (386)
+.. |....+.+|++|+|.|.+.+. +...+.|+|.........+.... +.... ...+|+....+.....++|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 444 677789999999999999864 45779999865432222111111 11111 11346666655566778999
Q ss_pred EcccCCCCCeEEEEEeEEc--------ccceeeeEEEEEEec---------------CCeeecCCCceEEEeCCccEEEE
Q psy8823 100 VKDIQETDAGYYRCQVIIG--------INNKISAEVDLQVRR---------------PPVISDNSTRSLVVSEGQPVQLE 156 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~g~~v~l~ 156 (386)
|.+++.+|+|.|+|.+.+. ..........|.|.. ++.+. ..+. ..+.+|++++|.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~-~~p~-~~v~~G~~v~L~ 160 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLT-QPPS-VSKGLRQTATLT 160 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBB-CCSE-EEECTTCCEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEE-eCCc-EEEecCCCEEEE
Confidence 9999999999999999765 122233455677765 22232 3333 789999999999
Q ss_pred EEeee-eC-CCeEEEEEcC--eeeC---C---------CCceEE----eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 157 CFAGG-HP-TPRISWRREN--NAIL---P---------TGGSIY----RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 157 C~~~~-~~-~~~v~W~~~~--~~~~---~---------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|.+.+ .+ .+.+.|++.. .... . ..+... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 161 C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 161 CTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp EECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 99977 43 3789999843 1111 0 011111 13469999999999999999999865
No 290
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.83 E-value=6.3e-20 Score=149.04 Aligned_cols=173 Identities=20% Similarity=0.340 Sum_probs=117.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC---C-------------CCceEE------eeeEEEECC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL---P-------------TGGSIY------RGSILKIPQ 193 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~-------------~~~~~~------~~~~l~i~~ 193 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ .. +. . ..+... ....|.|.+
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (220)
T 1pz5_B 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence 345788999999999998765 6789999864 11 10 0 011111 123899999
Q ss_pred CCCCCCeEEEEEEecCCCCc--eeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCee
Q psy8823 194 ITKEDRGTYYCVAENGVGKG--TRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQ 265 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~ 265 (386)
++.+|+|.|+|.+.+..+.. ......|.|. .+|.+...++...+.+|+.++|.|.+.|. |.| .+.|++++..
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 167 (220)
T 1pz5_B 88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS 167 (220)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence 99999999999999875321 1134566665 34555544444456789999999999987 888 9999998864
Q ss_pred eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 266 QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.......... ........+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus 168 ~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 168 SGVRTVSSVL----QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp TTEEECCCEE----ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cceEEcCCcc----cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence 1101000000 00112246789999998877 99999999999987776553
No 291
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.83 E-value=1.1e-19 Score=146.52 Aligned_cols=168 Identities=19% Similarity=0.278 Sum_probs=114.9
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC----------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL----------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+|++ .... ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 34688999999999998765 4789999863 2210 01111111 238999999999
Q ss_pred CCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecC
Q psy8823 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNN 271 (386)
Q Consensus 198 d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~ 271 (386)
|+|.|+|.+.+... ......|.|. .+|.+...++...+..|+.++|.|.+.|. |.| .+.|++++........
T Consensus 89 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~ 166 (210)
T 3d9a_H 89 DTATYYCANWDGDY--WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF 166 (210)
T ss_dssp GCEEEEEEETTSSC--BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred cCEEEEEEEecCcc--cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEc
Confidence 99999999998642 2223456664 24555544444556789999999999987 888 9999999875211111
Q ss_pred ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
.... ........+.|.|.++..+| |.|+|.|.|..|......
T Consensus 167 ~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 167 PAVL----QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp CCEE----ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CCcc----CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 1111 01112245679999998877 999999999999876544
No 292
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.83 E-value=3.4e-19 Score=148.03 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=122.0
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ...+.... ...|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (256)
T 1nqb_A 8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT 87 (256)
T ss_dssp CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence 446788999999999998765 5789999852 2210 01111111 3479999999
Q ss_pred CCCCeEEEEEEecCCCC----ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-----eeEEEe--CCe
Q psy8823 196 KEDRGTYYCVAENGVGK----GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-----AIVWIK--EDT 264 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-----~~~W~~--~~~ 264 (386)
.+|+|.|+|.+.+..+. .....+.|.|..+|.+...+....+.+|++++|.|.+.+.|.+ .+.|++ ++.
T Consensus 88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~ 167 (256)
T 1nqb_A 88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ 167 (256)
T ss_dssp GGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred hhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence 99999999999987542 1234567778777776666666778899999999999998875 899999 554
Q ss_pred eee-ee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEE
Q psy8823 265 QQV-LT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFES 323 (386)
Q Consensus 265 ~~~-~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 323 (386)
... +. . ..++... .......|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 168 SPKLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CcEEEEEEeCCCCCccCCcEEEE-----ccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 321 10 0 1122211 01135679999999999999999999864422 234556664
No 293
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.83 E-value=2.5e-19 Score=148.22 Aligned_cols=175 Identities=18% Similarity=0.291 Sum_probs=117.7
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--ee-----------------CCCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AI-----------------LPTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~-----------------~~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.| .+.+.|+++.. .. ....+.... ..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998876 57899998531 11 001111111 34799999999
Q ss_pred CCCeEEEEEEecCCCC-ceeeeEEEEEEec---------------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 197 EDRGTYYCVAENGVGK-GTRRNIAVEVEFA---------------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
+|+|.|+|.+.|..+. .......|.|... +.+...+....+.+|++++|.|.+.+.|.+.+.|+
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~ 170 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWY 170 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence 9999999999987221 1223346666543 23444455566889999999999999998999999
Q ss_pred e--CCeeeee--ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEE
Q psy8823 261 K--EDTQQVL--TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFES 323 (386)
Q Consensus 261 ~--~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 323 (386)
+ ++..... .. ..++... .......|.|.+++.+|+|.|+|.|.|..+... ....|.|.
T Consensus 171 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 171 QQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9 4443211 00 1122111 112356799999999999999999998654332 34566564
No 294
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.83 E-value=7.2e-20 Score=147.59 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=115.7
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccc-ccccCCceeEE---eccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEP-LPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|....+.+|++|+|.|.+.+.+ .+.+.|+|+........ .....+..... ..+|+.+..+...++++|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 5566789999999999998764 37799999643211111 11111111111 134555544434457799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILP 178 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~ 178 (386)
.+|+|.|+|.+.+.. .......|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|++++..+..
T Consensus 87 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 163 (210)
T 3d9a_H 87 TEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV 163 (210)
T ss_dssp GGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred cccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccce
Confidence 999999999997542 122334566653 3433322111 124679999999999887 777 9999998875311
Q ss_pred C-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 179 T-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 179 ~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. .+.....+.|.|.++..+| |.|+|.+.|..+.
T Consensus 164 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 203 (210)
T 3d9a_H 164 HTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 203 (210)
T ss_dssp EECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred EEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 0 0122234579999988877 9999999998775
No 295
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.83 E-value=2.3e-20 Score=149.31 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=106.7
Q ss_pred eecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 36 KDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
+.+|++|+|.|.+ +.+.|.|+|++..+.. .. ..+.+|.|.+++.+|+|.|+|.+
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~--------------~~---------~~~~~L~i~~v~~~DsG~Y~C~~ 68 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGF--------------LT---------EDKKKWNLGSNAKDPRGMYQCKG 68 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEE--------------EE---------SSCCCEEEEEGGGCCEEEEEEES
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCC--------------CC---------CCCCeEEeCCCCcCCCEEEEEEe
Confidence 4689999999998 6778999998754310 00 01237999999999999999996
Q ss_pred EEcccceeeeEEEEEEec-------------------------------CCeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 116 IIGINNKISAEVDLQVRR-------------------------------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v~~-------------------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
.+. .+..+.|.+.. ++.+. ..+ .....+|++++|.|. +.|.
T Consensus 69 ~~~----~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~v~~~G~~v~L~C~--g~p~ 140 (204)
T 1sy6_A 69 SQN----KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-QTP-YKVSISGTTVILTCP--QYPG 140 (204)
T ss_dssp SSS----CCCCEEEEEEC-------------------------------------CCC-CEEEEETTEEEEECS--CCCS
T ss_pred cCC----CCeeEEEEEEEecccccccccccccccccccccccccccccccccee-cCC-ceeeecCCcEEEEcC--CCCC
Confidence 432 22234444430 11111 112 222238999999998 7888
Q ss_pred CeEEEEEcCeeeCCCC---ceEEeeeEEEECCC-CCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 165 PRISWRRENNAILPTG---GSIYRGSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.++|++++..+.... .....+..|.|.++ +.+|+|.|+|.+.|..+...+..+.|.+
T Consensus 141 p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 141 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp SCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 8999999998875432 12234778999999 9999999999999998864455665554
No 296
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.83 E-value=7.8e-20 Score=152.13 Aligned_cols=175 Identities=20% Similarity=0.241 Sum_probs=116.9
Q ss_pred EEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee---C-------------CCCceEEe------eeEEEECCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI---L-------------PTGGSIYR------GSILKIPQITKED 198 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~---~-------------~~~~~~~~------~~~l~i~~~~~~d 198 (386)
..+.+|++++|.|.+.+.| .+.+.|++++ ... . ...+.... ...|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence 4688999999999998875 6789999862 111 0 01111111 3489999999999
Q ss_pred CeEEEEEEecCCC-------C-ceeeeEEEEEEecc---------------eEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 199 RGTYYCVAENGVG-------K-GTRRNIAVEVEFAP---------------VITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 199 ~g~y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
+|.|+|.+.+..+ . .......|.|...| .+...+....+.+|++++|.|.+.+.|.+
T Consensus 90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 169 (257)
T 1f3r_B 90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN 169 (257)
T ss_dssp CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence 9999999998753 1 11234567776543 12233445678899999999999999888
Q ss_pred eeEEEe--CCeeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 256 AIVWIK--EDTQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 256 ~~~W~~--~~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.+.|++ ++.... + .. ..++.... ......|.|.+++.+|+|.|+|.|.|..........|.|.
T Consensus 170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~ 244 (257)
T 1f3r_B 170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK 244 (257)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec-----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence 999999 554321 1 10 11222110 1235689999999999999999999975222234455554
Q ss_pred e
Q psy8823 324 I 324 (386)
Q Consensus 324 ~ 324 (386)
.
T Consensus 245 ~ 245 (257)
T 1f3r_B 245 A 245 (257)
T ss_dssp S
T ss_pred C
Confidence 3
No 297
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.83 E-value=1.2e-19 Score=147.82 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=117.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-cC--CceeE--EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-ST--GSSLI--IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+++...+.+|++|+|.|.+.+.+ ...+.|+|+........+.. .. +.... ...+|+.+..+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 34566799999999999998765 57799999753221111110 00 00000 01346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEccc-----c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN-----N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISW 169 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W 169 (386)
++.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W 164 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW 164 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEEC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEE
Confidence 999999999999987542 1 122345777765 23332211111 14579999999999876 665 8999
Q ss_pred EEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 170 RRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++++..+.. .++.......|.|.++..+| |.|+|.|.|....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 165 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp CTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred ecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 998865211 11222234578999998888 9999999996543
No 298
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.83 E-value=1.6e-19 Score=150.00 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=120.6
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...+.... ...|.|.+++
T Consensus 9 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 88 (253)
T 3uzq_A 9 GAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT 88 (253)
T ss_dssp CCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC
Confidence 456788999999999998744 6789999832 1110 00111111 2359999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEe---------------cceEeeCCCcccccCCCcEEEEEEEEecCCC----e
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF---------------APVITVPKPRLGQALQYDMDLECHVEAYPPP----A 256 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~ 256 (386)
.+|+|.|+|.+.+..+........+.|.. +|.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus 89 ~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~ 168 (253)
T 3uzq_A 89 SGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSF 168 (253)
T ss_dssp GGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEEC
T ss_pred cccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcE
Confidence 99999999999986554334456666664 3455656666788899999999999998876 8
Q ss_pred eEEEeCC--eeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEE
Q psy8823 257 IVWIKED--TQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFES 323 (386)
Q Consensus 257 ~~W~~~~--~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 323 (386)
+.|+++. .... + .. ..++... .......|.|.+++.+|+|.|+|.|.|..+..- .-..|.|.
T Consensus 169 v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~ 243 (253)
T 3uzq_A 169 MHWYQQKAGQPPKLLIYRASNLESGIPARFSGS-----GSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK 243 (253)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred EEEEEECCCCCCEEEEEEccccCCccCCceEEe-----CCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence 9999842 2111 1 10 0111111 111356799999999999999999999765433 35667776
Q ss_pred ecCCCC
Q psy8823 324 IIPVCP 329 (386)
Q Consensus 324 ~~p~~~ 329 (386)
..+..+
T Consensus 244 ~~~~~~ 249 (253)
T 3uzq_A 244 RPLEHH 249 (253)
T ss_dssp CC----
T ss_pred CCCCCc
Confidence 655443
No 299
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.83 E-value=2.4e-20 Score=151.69 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=122.8
Q ss_pred eEEEeCCccEEEEEEeee-eCCC----eEEEEEcCeeeCC-------------CCceE-E--------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG-HPTP----RISWRRENNAILP-------------TGGSI-Y--------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~-~~~~----~v~W~~~~~~~~~-------------~~~~~-~--------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+ .+.+ .+.|++++..... ..+.. . ....|.|.+++.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~ 87 (221)
T 3eow_R 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRV 87 (221)
T ss_dssp CCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSSC
T ss_pred cEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCCh
Confidence 445778999999999843 4433 4999998642211 11111 1 245899999999
Q ss_pred CCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcE-EEEEEEE-ecCCCeeEEEeCCeeeeeecCcee
Q psy8823 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM-DLECHVE-AYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~-~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
+|+|.|+|.+.+.........+.|.|..+|.+........ ..|+.+ .|.|.+. |.|.|.+.|++++..... ...
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~--~~~- 163 (221)
T 3eow_R 88 EDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ--TSQ- 163 (221)
T ss_dssp CCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCC--CEE-
T ss_pred HHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCc--cce-
Confidence 9999999999986622356777788888887765433333 678888 5999987 899999999987654222 111
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
............+.|.|.++..+|+|.|+|.|.|..+.....+.| ...|.
T Consensus 164 -~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v--~~~~~ 213 (221)
T 3eow_R 164 -VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTV--SLTVY 213 (221)
T ss_dssp -ECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEE--CCCCC
T ss_pred -eecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEE--EEEEE
Confidence 111112223346789999999999999999999999876666655 44444
No 300
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.82 E-value=1.1e-19 Score=148.50 Aligned_cols=195 Identities=17% Similarity=0.261 Sum_probs=121.2
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccccc-CCceeEE---eccceeeecCCCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIS-TGSSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
+...|....+.+|++|+|.|.+.+. +...+.|||.........+... .+..... ..+|+....+...++++|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 3444666778999999999999764 4567999997543211111111 1111111 34667666555557889999
Q ss_pred cccCCCCCeEEEEEeEEc---ccceeeeEEEEEEec---------CCeeecCCCceEEEeCCccEEEEEEeeee-CC-Ce
Q psy8823 101 KDIQETDAGYYRCQVIIG---INNKISAEVDLQVRR---------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PR 166 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~---~~~~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~ 166 (386)
.+++.+|+|.|.|.+.+. ........+.|.|.. +|......+....+.+|+.++|.|.+.+. |. +.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 999999999999999763 111222345677752 22221111222223458899999999886 64 58
Q ss_pred EEEEE-cCeeeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 167 ISWRR-ENNAILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 167 v~W~~-~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
++|++ ++..+.... ......+.|.|.+... + |.|+|.+.|..... .+.+.+.++|
T Consensus 164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~---~~~~~~~fp~ 227 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG---GADQAIFFPS 227 (230)
T ss_dssp EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT---TSCEEEEECC
T ss_pred EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC---ceeEeeecCC
Confidence 99999 776553221 1122345788988876 4 99999999976541 2333444554
No 301
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.82 E-value=3.1e-19 Score=145.70 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=116.0
Q ss_pred ccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|....+.+|++|+|.|.+.+.+. ..+.|+|+........+. ...+..... ..+|+.+..+...++++|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 56677999999999999987664 779999965321111111 111111111 1346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEccc------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEE
Q psy8823 103 IQETDAGYYRCQVIIGIN------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RIS 168 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~ 168 (386)
++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v~ 165 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLT 165 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEEE
Confidence 999999999999987542 1 112346777763 3443322222 235689999999999886 766 999
Q ss_pred EEEcCeeeCCCC-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 169 WRRENNAILPTG-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 169 W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|++++..+.... ........|.|.+...+| |.|+|.+.|..+.
T Consensus 166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~ 215 (228)
T 3bae_H 166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS 215 (228)
T ss_dssp EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence 999886531100 112234568999988866 9999999998765
No 302
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.82 E-value=1.7e-19 Score=146.76 Aligned_cols=172 Identities=18% Similarity=0.296 Sum_probs=116.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC---C-------------CCceEEe------eeEEEECCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL---P-------------TGGSIYR------GSILKIPQI 194 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~-------------~~~~~~~------~~~l~i~~~ 194 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. .. +. . ..+.... ...|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 34688999999999998765 6789999853 11 10 0 0111111 348999999
Q ss_pred CCCCCeEEEEEEecCCCC----ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCe
Q psy8823 195 TKEDRGTYYCVAENGVGK----GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDT 264 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~ 264 (386)
+.+|+|.|.|.+.+..+. .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.| .+.|++++.
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 168 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 168 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence 999999999999986531 122334566653 4555544434446689999999999985 888 999999987
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.+... ...... ........+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 169 ~~~~~---~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 169 SSGVH---TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp CTTEE---EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred EcceE---eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 62111 111100 11122235679999999999 99999999999987665544
No 303
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.82 E-value=7.7e-19 Score=145.61 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=111.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----e--------CC-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----I--------LP-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~--------~~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|+.++|.|.+.+.+.+.+.|+++... + .. ..+... ....|.|.+++.+|+|.|+
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (250)
T 3esu_F 11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF 90 (250)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence 4566788999999999999999899999995311 0 00 011111 1237999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEec-------------------ceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeC
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFA-------------------PVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKE 262 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~ 262 (386)
|.+.|..+........|.|..+ +.....+....+.+|++++|.|.+.+.+ .+.+.|+++
T Consensus 91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 170 (250)
T 3esu_F 91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ 170 (250)
T ss_dssp EEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence 9999876543344456666543 2233344556688999999999998877 679999987
Q ss_pred --Ceeeeee---------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 263 --DTQQVLT---------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 263 --~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
+...... ...++..... .......|.|.+++.+|+|.|+|.|.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 171 RPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTAD---KSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCCCcEEEEEEeccCCccccCccccceEEEEec---CCCCeEEEEECCCCcccCEEEEEEEec
Confidence 3331111 0012221110 112345799999999999999999997
No 304
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.82 E-value=1.2e-19 Score=142.05 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=106.0
Q ss_pred cceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
....+.+|++|+|.|.+.. .+...|.|+|++... ...+..+......+ +|+.+ ...+++|.|.+++.+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~---i~~~~~~~~~~~~~~~~~~R~~l----~~~~~sL~I~~v~~~ 79 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQK---ILEYFPNGKKTVFESVFKDRVDL----DKTNGALRIYNVSKE 79 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCE---EEEECSSSCEEECSSTTTTTEEE----CTTTCCEEECSCCGG
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeE---EEEEECCCCeeEcchhcCCeEEE----eCCCccEEEcCCCHH
Confidence 3456889999999999754 235679999953211 11111111111112 23333 224558999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceEEe
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR 185 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~ 185 (386)
|+|.|+|.+.+.. .....+.|.|..++.. ..+. ..+..++|.|.+ .+ |.+.++|++++..+. ...
T Consensus 80 D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~-----P~i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~ 145 (180)
T 2dru_A 80 DRGDYYMRMLHET--EDQWKITMEVYEMVSK-----PMIY-WECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLR 145 (180)
T ss_dssp GCEEEEEEEESSS--EEEEEEEEEEECCCCC-----CEEE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EES
T ss_pred HCeEEEEEEEcCC--eEEEEEEEEEECCCCC-----CEEE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCC
Confidence 9999999987543 5567778888765321 1122 245779999999 66 889999999998764 122
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.+|.+.. .+|+|.|+|.+.|..+.
T Consensus 146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~ 170 (180)
T 2dru_A 146 QKTMSYQW--TNLRAPFKCKAVNRVSQ 170 (180)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEE
T ss_pred CCEEEEEE--hhcCccEEEEEecCcCc
Confidence 34566533 78999999999998776
No 305
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.82 E-value=1.5e-19 Score=150.35 Aligned_cols=179 Identities=17% Similarity=0.308 Sum_probs=118.8
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee--C---------------CCCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI--L---------------PTGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~--~---------------~~~~~~~------~~~~l~i~~~~~ 196 (386)
...+.+|++++|.|.+.+.+ .+.+.|++.. ... . ...+... ....|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 35688999999999998765 6789999843 111 0 0011111 123599999999
Q ss_pred CCCeEEEEEEecCCC---CceeeeEEEEEEe----------------cceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 197 EDRGTYYCVAENGVG---KGTRRNIAVEVEF----------------APVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
+|+|.|+|.+.+... ........|.|.. +|.+...+....+.+|++++|.|.+.+.|.+.+
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v 170 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNL 170 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEE
Confidence 999999999998621 1123445666664 455666666678889999999999999988899
Q ss_pred EEEeCC--ee-eee-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEEe
Q psy8823 258 VWIKED--TQ-QVL-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFESI 324 (386)
Q Consensus 258 ~W~~~~--~~-~~~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~ 324 (386)
.|++.. .. ..+ .. ..++... .......|.|.+++.+|+|.|+|.|.|..+..- ....|.|..
T Consensus 171 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 171 NWLQQKPDGTIKRLIYATSSLDSGVPKRFSGS-----RSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp EEEEECTTCCEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEECCCCCcEEEEEeccccCCccCCCEEEe-----cCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 999842 22 111 10 1122111 111355799999999999999999999755332 356777765
Q ss_pred cCC
Q psy8823 325 IPV 327 (386)
Q Consensus 325 ~p~ 327 (386)
.+.
T Consensus 246 ~~~ 248 (256)
T 3umt_A 246 AAA 248 (256)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 306
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.82 E-value=8.2e-19 Score=144.57 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=110.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC---------CCCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL---------PTGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~---------~~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++.. . +. ...+... ....|.|.+++.+|+|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (242)
T 2znx_A 8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (242)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence 445678899999999999988888999999631 1 10 0111111 1347999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecce-------------EeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC--eee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAPV-------------ITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED--TQQ 266 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~~ 266 (386)
|.+.+..+........|.|..+|. ....+....+.+|++++|.|.+.+.| .+.+.|+++. ...
T Consensus 88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~ 167 (242)
T 2znx_A 88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL 167 (242)
T ss_dssp EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence 999987543233445677766542 22223334588999999999999876 4689999853 221
Q ss_pred e-ee----c---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 267 V-LT----N---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 267 ~-~~----~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
. +. . ..++.... ........|.|.+++.+|+|.|+|.|.|.
T Consensus 168 ~~l~~~~~~g~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 168 EYMGYVSYSGSTYYNPSLKSRISITR---DTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEECGGGTTCEEEEE---ETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEEEEEecCCccccCccccCcEEEEe---cCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 0 00 0 11222211 01123468999999999999999999984
No 307
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.82 E-value=3.3e-19 Score=139.24 Aligned_cols=152 Identities=16% Similarity=0.278 Sum_probs=110.4
Q ss_pred ceEEEeCCccEEEEEEee--eeCCCeEEEEE--cCeeeC----------CCCce-EEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 143 RSLVVSEGQPVQLECFAG--GHPTPRISWRR--ENNAIL----------PTGGS-IYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~--~~~~~~v~W~~--~~~~~~----------~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
..+...+|++++|.|... +.+.+.+.|++ ++..+. ...+. ...+++|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~ 86 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence 456788999999999542 34456899999 887652 11221 2235689999999999999999999
Q ss_pred cCCCCce-eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 208 NGVGKGT-RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 208 ~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
|..+... ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.+.|++++.. + ..
T Consensus 87 n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~--l-~~------------ 143 (182)
T 1hnf_A 87 DTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKH--L-KL------------ 143 (182)
T ss_dssp ETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCE--E-EE------------
T ss_pred eCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEE--C-CC------------
Confidence 9877633 35677877653 33322 233689999999999999999999987 3 11
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
....|.+.. ..+|+|.|+|.|.|+.|....+..+
T Consensus 144 --~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 144 --SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp --ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred --CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 122233333 4689999999999999998887766
No 308
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.82 E-value=3.1e-19 Score=149.75 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=114.7
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee----
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI---- 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~---- 176 (386)
.++.|.+.|.|.+.+..+... ....+.|. ..+..+.+.+|++++|.|.+.+ +.+.+.|+|... ..
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-------~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~ 73 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSG-GGGGMKVI-------QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLI 73 (270)
T ss_dssp --------------------------CCCE-------EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEE
T ss_pred chhhhHHHHHHHHhccCCccc-cccceeEE-------eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEE
Confidence 457899999999886543321 11122221 1234567889999999999865 667899998321 10
Q ss_pred --------CCC---C-ceEE-----eeeEEEECCCCCCCCeEEEEEEecCCC---CceeeeEEEEEEe------cceEee
Q psy8823 177 --------LPT---G-GSIY-----RGSILKIPQITKEDRGTYYCVAENGVG---KGTRRNIAVEVEF------APVITV 230 (386)
Q Consensus 177 --------~~~---~-~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~ 230 (386)
... . +... ....|.|.+++.+|+|.|.|.+.+... ........+.|.. +|.+..
T Consensus 74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~ 153 (270)
T 3qib_D 74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV 153 (270)
T ss_dssp EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence 000 0 1111 145799999999999999999986432 1123345666665 555443
Q ss_pred -CCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEee------eeecCceeeeEEEEeecccCC-C
Q psy8823 231 -PKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKRQ-Y 300 (386)
Q Consensus 231 -~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d-~ 300 (386)
.+....+..|+.++|.|.+.| .|.+ .+.|+++|.. +.......... .........+.|.|.....+| +
T Consensus 154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~ 231 (270)
T 3qib_D 154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE--VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPR 231 (270)
T ss_dssp EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--ECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTT
T ss_pred ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEE--CCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCC
Confidence 333334556999999999998 6667 8999999987 44332211000 011222234678888888887 9
Q ss_pred eEEEEEEEcCCCceee
Q psy8823 301 GSYICRAANKLGTSEK 316 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~ 316 (386)
|.|+|.|.|.......
T Consensus 232 g~YtC~v~~~~l~~~~ 247 (270)
T 3qib_D 232 NHFRCQVQFYGLSEND 247 (270)
T ss_dssp CEEEEEEEECCBCTTS
T ss_pred CeEEEEEEecCCCCcc
Confidence 9999999998766554
No 309
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.82 E-value=3.7e-19 Score=149.69 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=116.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe-----eeCC---------CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN-----AILP---------TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~~---------~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.|.+.+.|++++. .+.. ..+... ....|.|.+++.+|+|.|+
T Consensus 19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 98 (276)
T 3auv_A 19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 98 (276)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence 445678899999999999988888999998652 1110 111111 1237999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecc-------------e-EeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC--ee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAP-------------V-ITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED--TQ 265 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p-------------~-~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~ 265 (386)
|.+.|..+........|.|...| . ....+....+.+|++++|.|.+.+.| .+.+.|++++ ..
T Consensus 99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~ 178 (276)
T 3auv_A 99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC 178 (276)
T ss_dssp EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence 99998754323334556665543 1 22233456788999999999999877 4799999964 21
Q ss_pred e-eee--------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC---Cc--eeeEEEEEEEec
Q psy8823 266 Q-VLT--------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL---GT--SEKTVELFESII 325 (386)
Q Consensus 266 ~-~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~--~~~~~~l~v~~~ 325 (386)
. .+. ...++..... .......|.|.+++.+|+|.|+|.|.|.. +. -.....|.|...
T Consensus 179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~ 255 (276)
T 3auv_A 179 LEWVAGITPAGGYTYYADSVKGRFTISAD---TSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA 255 (276)
T ss_dssp EEEEEEECGGGCCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred cEEEEEEeccCCccccccccCCcEEEEec---CCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence 1 110 0112221110 01134589999999999999999999983 22 123456666544
Q ss_pred C
Q psy8823 326 P 326 (386)
Q Consensus 326 p 326 (386)
+
T Consensus 256 ~ 256 (276)
T 3auv_A 256 S 256 (276)
T ss_dssp -
T ss_pred c
Confidence 3
No 310
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.82 E-value=5.3e-19 Score=138.03 Aligned_cols=160 Identities=13% Similarity=0.196 Sum_probs=107.4
Q ss_pred cceeeecCCcEEEEEEEee--CCCCcEEEEe--cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQY--AQDYPVIWMK--VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~--~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
....+.+|++|+|.|.... .+.+.|.|++ ++..+.. ...+......+.|+.+.. +++|.|.+++.+|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~----~~~~~~~~~~~~R~~~~~-----ngsL~I~~v~~~D 77 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQ----FRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDD 77 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEE----ECGGGCEEESCTTEEECT-----TSCEEECSCCGGG
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEE----EeCccCCCCCCCeEEECC-----CCCEEECCCChhh
Confidence 3455889999999995432 3456799999 6654311 001111112344555442 2389999999999
Q ss_pred CeEEEEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEee
Q psy8823 108 AGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 186 (386)
+|.|+|.+.+..+.. ....+.|.|+.+... ..+.. .+..+.|.|.+.+.|.+.+.|++++..+ . ...
T Consensus 78 sG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~-----P~i~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~ 145 (182)
T 1hnf_A 78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVSK-----PKISW-TCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQ 145 (182)
T ss_dssp CEEEEEEEEETTSCEEEEEEEEEEEECCCCC-----CEEEE-ETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EES
T ss_pred CEEEEEEEEeCCCceeEEEEEEEEEcCcCCC-----CEEEE-ccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCC
Confidence 999999999865543 245677888764211 11122 3447999999998888999999999877 1 122
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..|.+.. ..+|+|.|+|.|.|..+..
T Consensus 146 ~~i~~~~-~~~d~G~Y~C~a~N~~~~~ 171 (182)
T 1hnf_A 146 RVITHKW-TTSLSAKFKCTAGNKVSKE 171 (182)
T ss_dssp SCEEEEC-CSCEEEEEEEEEECSSCEE
T ss_pred cEEEEec-ccCCCcEEEEEEEeCCCCc
Confidence 3344433 4789999999999998873
No 311
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.81 E-value=2.1e-19 Score=149.58 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=116.4
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e--eC--------------CCCceEE------eeeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A--IL--------------PTGGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~--~~--------------~~~~~~~------~~~~l~i~~~~~~ 197 (386)
...+.+|++++|.|.+.+. +.+.+.|++... . .. ...+... ....|.|.+++.+
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 96 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE 96 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence 3458899999999999874 467899998431 1 10 0011111 1236999999999
Q ss_pred CCeEEEEEEecCCCC---ceeeeEEEEEEec--------------ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEE
Q psy8823 198 DRGTYYCVAENGVGK---GTRRNIAVEVEFA--------------PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVW 259 (386)
Q Consensus 198 d~g~y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W 259 (386)
|+|.|+|.+.+..+. .......|.|..+ +.+...+....+.+|++++|.|.+.+.+.+ .+.|
T Consensus 97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W 176 (257)
T 3gkz_A 97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYW 176 (257)
T ss_dssp GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEE
T ss_pred hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEE
Confidence 999999999986221 1233456666654 445555666778899999999999998887 8999
Q ss_pred EeC--Ceeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEEecC
Q psy8823 260 IKE--DTQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFESIIP 326 (386)
Q Consensus 260 ~~~--~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p 326 (386)
++. +.... + .. ..++... .......|.|.+++.+|+|.|+|.|.|..... ..-..|.|...|
T Consensus 177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~ 251 (257)
T 3gkz_A 177 YQQKPGSSPKLWIYSTSNLASGVPARFSGS-----GSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP 251 (257)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred EEECCCCCcEEEEEEccccCCCcCCCEEEe-----cCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence 984 22211 1 10 0111111 11134679999999999999999999865432 234566666555
Q ss_pred CCC
Q psy8823 327 VCP 329 (386)
Q Consensus 327 ~~~ 329 (386)
..|
T Consensus 252 ~~~ 254 (257)
T 3gkz_A 252 HHH 254 (257)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 312
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.81 E-value=2.3e-19 Score=143.59 Aligned_cols=176 Identities=15% Similarity=0.341 Sum_probs=110.9
Q ss_pred ceeeecCCcEEEEEEEee----CCCCcEEEEecCCccccccccccCCceeEE--eccceeeecCCCcceEEEEEcccCCC
Q psy8823 33 EQIKDIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+..+.+|++|+|.|.+.+ .+.+.+.|++++..+. ....+..... ...|..+. ..++.+|.|.+++.+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~----~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~ 75 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVL----TMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPS 75 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEE----EEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGG
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEE----EEeCCceeecCcccceeEEc---cCCCcEEEEecccch
Confidence 356889999999999863 2456799999875431 1111110000 01122221 123458999999999
Q ss_pred CCeEEEEEeEEccccee----eeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 107 DAGYYRCQVIIGINNKI----SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
|+|.|+|.+.+..+... ...+.|.|..++..+.. .......|+.++|.|.+ .|.|.|.++|++++..+.....
T Consensus 76 D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~--~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~ 153 (201)
T 1dr9_A 76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI--SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT 153 (201)
T ss_dssp GCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEE--EEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE
T ss_pred hCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCce--EeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc
Confidence 99999999998654332 45677777765321110 01112458889999999 5899999999999988764432
Q ss_pred eEEe--e-eEE---EECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 182 SIYR--G-SIL---KIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 182 ~~~~--~-~~l---~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.... . ..+ .+..+..+|.|.|+|.|.|..+. .+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~-~s~~~ 195 (201)
T 1dr9_A 154 TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLR-VNQTF 195 (201)
T ss_dssp EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCC-EEEEE
T ss_pred eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcce-eeeEE
Confidence 2211 1 111 22344568999999999999887 33433
No 313
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.81 E-value=4e-19 Score=144.17 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=114.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC--------------CCCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL--------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +. ...+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence 346788999999999998765 5689999853 11 10 0111111 13489999999
Q ss_pred CCCCeEEEEEEecCCCC--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CC--CeeEEEeCCeee
Q psy8823 196 KEDRGTYYCVAENGVGK--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PP--PAIVWIKEDTQQ 266 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~--~~~~W~~~~~~~ 266 (386)
.+|+|.|.|.+.+..+. .......|.|.. +|.+...+ ...+..|+.++|.|.+.+. |. +.+.|++++..+
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence 99999999999986542 122345677753 35554433 3456789999999999887 76 689999998763
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....... ...........+.|.|.....+|.|.|+|.|.|..|..+
T Consensus 167 ~~~~~~~---~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 167 TTVNFPP---ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEECCC---EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEecCc---eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 1111000 001111222345799999999999999999999998755
No 314
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.81 E-value=4.4e-19 Score=145.89 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=111.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee--------------C-CCCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI--------------L-PTGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~--------------~-~~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|. .+.+.+.+.|+++. ... . ...+... ....|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds 85 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT 85 (238)
T ss_dssp CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence 45567899999999999 67788899999962 111 0 0111111 234799999999999
Q ss_pred eEEEEEEecCCCC----ceeeeEEEEEEecc------------eEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC
Q psy8823 200 GTYYCVAENGVGK----GTRRNIAVEVEFAP------------VITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED 263 (386)
Q Consensus 200 g~y~C~~~~~~~~----~~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 263 (386)
|.|+|.+.+..+. .......|.|...+ .+...+....+.+|++++|.|.+.+.|.+.+.|++++
T Consensus 86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~ 165 (238)
T 2p1y_A 86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF 165 (238)
T ss_dssp EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence 9999999987542 11234466665543 3444455667889999999999999999999999964
Q ss_pred ee---eeee---------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 264 TQ---QVLT---------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 264 ~~---~~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.. ..+. ...++.... ........|.|.+++.+|+|.|+|.|.|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 166 PGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp TTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCCCEEEEEEccCCCcccCCceEEEe---cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 21 0010 011111110 011235689999999999999999999984
No 315
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.81 E-value=2.4e-19 Score=148.77 Aligned_cols=180 Identities=20% Similarity=0.314 Sum_probs=116.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-cc-CCceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+. +...+.|+|.........+. .. .+.... ...+|+.+..+...++++|.|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 456778999999999999763 34669999965432211111 11 111101 123566666555567889999999
Q ss_pred CCCCCeEEEEEeEEcc---cceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCe
Q psy8823 104 QETDAGYYRCQVIIGI---NNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENN 174 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~ 174 (386)
+.+|+|.|.|.+.+.. .........|.|. .+|.+....+ ...+..|+.++|.|.+.+ .|.+ .+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC-CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999997642 1222344567775 3444432212 223557999999999987 5655 899999886
Q ss_pred eeC-------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 175 AIL-------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 175 ~~~-------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
... ...+.....+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~ 209 (253)
T 3liz_H 166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 209 (253)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence 321 001233334679999999999 9999999997665
No 316
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.81 E-value=3.7e-20 Score=151.31 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=113.9
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEE-EeCCccEEEEEEeeeeC----CCeEEEEEcCeeeCCCC---
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV-VSEGQPVQLECFAGGHP----TPRISWRRENNAILPTG--- 180 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~--- 180 (386)
|.|.|.+.+....- ... .+..+|.+....+.... +..|+.++|.|.+.|.+ ...++|+++|..+....
T Consensus 1 ~~~~~~~~~~~~~c-~~~---~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~ 76 (240)
T 4acp_A 1 GTKSCDKTHTCPPC-PAP---ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76 (240)
T ss_dssp --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred CceeeeeeecCCCC-Ccc---ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence 78999988754321 111 01123333333333333 44699999999998864 33799999998874321
Q ss_pred ------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEe
Q psy8823 181 ------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEA 251 (386)
Q Consensus 181 ------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 251 (386)
......+.|.|.....+|.|.|+|.+.|..+. ...+.+.+ .+..+|.+.+.+.......|+.++|.|.+.|
T Consensus 77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~g 156 (240)
T 4acp_A 77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKG 156 (240)
T ss_dssp CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEE
T ss_pred ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeE
Confidence 11222457888888778899999999997653 22333332 2446777766555444445899999999998
Q ss_pred -cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 252 -YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 252 -~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
+|++ .+.|++++.. +............+..+...+.|.+.....++.|.|+|.|.|..-.
T Consensus 157 f~P~~i~v~W~k~g~~--~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~ 218 (240)
T 4acp_A 157 FYPSDIAVEWESNGQP--ENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 218 (240)
T ss_dssp EBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EeCCCcEEEEEECCEE--CCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence 5554 7999999987 3221111111112222334567888877778899999999998743
No 317
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.81 E-value=4.5e-20 Score=151.43 Aligned_cols=176 Identities=18% Similarity=0.259 Sum_probs=115.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CC-eEEEEEcCe--ee---C--------C-CCceEE----eeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TP-RISWRRENN--AI---L--------P-TGGSIY----RGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~-~v~W~~~~~--~~---~--------~-~~~~~~----~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+.+.+ .+ .+.|++++. .. . . ..+... ....|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 3445688999999999998754 34 699998742 11 0 0 111111 13479999999999999
Q ss_pred EEEEEecCCCC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce
Q psy8823 202 YYCVAENGVGK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 202 y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~ 273 (386)
|+|.+.+..+. .......+.|. .+|.+...++......|+.++|.|.+.|.+++ .+.|++++.. +.....
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~~~~ 183 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP--VKAGVE 183 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE--CCSSEE
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE--CCCCcc
Confidence 99999987762 12223445553 34544443333334468899999999986443 8999999987 433311
Q ss_pred eE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 274 YS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 274 ~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
.. ............+.|.|.++..+|+|.|+|.|.|..+..++++.
T Consensus 184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 184 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp ECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred ccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 10 00011112224568999999999999999999999887665543
No 318
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=144.67 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=120.6
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC----------CCCceEE------eeeEEEECCCCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL----------PTGGSIY------RGSILKIPQITKEDR 199 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~----------~~~~~~~------~~~~l~i~~~~~~d~ 199 (386)
.+..+.+.+|++++|.|.+.+.+.+.+.|++.... +. ...+... ...+|.|.+++.+|+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds 88 (256)
T 3tf7_C 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS 88 (256)
T ss_dssp SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence 34567889999999999998889999999984311 00 0011111 245799999999999
Q ss_pred eEEEEEEecCCCCc---eeeeEEEEEEe--------------------cceEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 200 GTYYCVAENGVGKG---TRRNIAVEVEF--------------------APVITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 200 g~y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
|.|+|.+.+..+.. ......|.|.. +|.+...+....+.+|++++|.|.+.+. .+.
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~ 167 (256)
T 3tf7_C 89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY 167 (256)
T ss_dssp SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence 99999999865421 22344566654 4456666666777899999999999876 679
Q ss_pred eEEEeCCe--ee-eee---c---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEE
Q psy8823 257 IVWIKEDT--QQ-VLT---N---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVE 319 (386)
Q Consensus 257 ~~W~~~~~--~~-~~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~ 319 (386)
+.|++... .. .+. . ..++... ........|.|.+++.+|+|.|+|.|.|..|... ....
T Consensus 168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT----RTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE----CCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEE
T ss_pred EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE----eCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeE
Confidence 99998432 10 010 0 0111110 0112355899999999999999999999877543 2355
Q ss_pred EEEEec
Q psy8823 320 LFESII 325 (386)
Q Consensus 320 l~v~~~ 325 (386)
|.|...
T Consensus 244 l~v~~~ 249 (256)
T 3tf7_C 244 LTVLEL 249 (256)
T ss_dssp EEEECG
T ss_pred EEEEcc
Confidence 656543
No 319
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.81 E-value=6.7e-19 Score=143.15 Aligned_cols=172 Identities=17% Similarity=0.309 Sum_probs=114.6
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---eC--------------CCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---IL--------------PTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~~--------------~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++... . +. ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 45688999999999998764 46899998531 1 10 01111111 34799999999
Q ss_pred CCCeEEEEEEecCCC---C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEe-CCe
Q psy8823 197 EDRGTYYCVAENGVG---K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIK-EDT 264 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~-~~~ 264 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++ ++.
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS 168 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence 999999999998652 1 112344677763 4554433233345689999999999987 777 999999 777
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeeccc--CCCeEEEEEEEcCCCceeeEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEK--RQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
. +....... .......+...+.|.|..... +|.|.|+|.|.|..+.....+
T Consensus 169 ~--l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 169 D--ISSTRGFP-SVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp B--CSCEEECC-CEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred c--cceeEECC-ccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 6 32200000 000111222356788888876 889999999999999877655
No 320
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.81 E-value=9e-19 Score=142.63 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=113.7
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. .... ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 6789999863 2110 01111111 35899999999
Q ss_pred CCCeEEEEEEecCCC-----C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCC
Q psy8823 197 EDRGTYYCVAENGVG-----K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKED 263 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~ 263 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 168 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 168 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence 999999999998753 1 112345677764 3554443333345689999999999986 776 99999998
Q ss_pred eeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 264 TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
.......... . ..........+.|.|.++..+| |.|+|.|.|..+.....
T Consensus 169 ~~~~~~~~~~--~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 218 (225)
T 1op3_H 169 LTSGVHTFPA--V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 218 (225)
T ss_dssp CCTTCEECCC--E-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred CcCCeEecCc--e-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence 6511110000 0 0111122245679999999888 99999999987665443
No 321
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.81 E-value=1.3e-19 Score=145.68 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=103.6
Q ss_pred eCCccEEEEEEeeeeCC----CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-
Q psy8823 148 SEGQPVQLECFAGGHPT----PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG- 213 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~- 213 (386)
.+|+.++|.|.+.|.++ ..++|+|++..+..... .......|.|.....+|+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 68999999999988753 48999999977643211 01112234443444455999999999977652
Q ss_pred eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 214 TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 214 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
....+.+ .+..+|.+...+.......|..+.|.|.+.|. |++ .+.|+++|.. +............+......+.
T Consensus 96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~gt~~~~s~ 173 (207)
T 1l6x_A 96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSK 173 (207)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEEE
T ss_pred eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCee--ccCccccCceECCCCCEEEEEE
Confidence 1222222 34556766554433333345669999999985 543 8999999987 4322111111111122223455
Q ss_pred EEEeecccCCCeEEEEEEEcCCCce
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
|.+.....+|+|.|+|.|.|.....
T Consensus 174 l~i~~~~~~~~g~YtC~a~n~~l~~ 198 (207)
T 1l6x_A 174 LTVDKSRWQQGNVFSCSVMHEALHN 198 (207)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEECHHHcCCCCEEEEEEEcCCcCC
Confidence 6777777788999999999987543
No 322
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.81 E-value=9.1e-19 Score=145.65 Aligned_cols=167 Identities=16% Similarity=0.285 Sum_probs=113.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcC--eeeC-------C----------CCceEEe------eeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRREN--NAIL-------P----------TGGSIYR------GSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-------~----------~~~~~~~------~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+. +.+.+.|++.. .... . ..+.... ...|.|.+
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 91 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 91 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence 3566789999999999999773 56789999743 1100 0 0111111 24699999
Q ss_pred CCCCCCeEEEEEEecC-----------CCCceeeeEEEEEEec---------------ceEeeCCCcccccCCCcEEEEE
Q psy8823 194 ITKEDRGTYYCVAENG-----------VGKGTRRNIAVEVEFA---------------PVITVPKPRLGQALQYDMDLEC 247 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~-----------~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C 247 (386)
++.+|+|.|+|.+.+. ..........|.|... |.+...+....+.+|++++|.|
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 171 (256)
T 3juy_B 92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSC 171 (256)
T ss_dssp CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEE
T ss_pred CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEE
Confidence 9999999999999986 1222334556777653 3455566677888999999999
Q ss_pred EEEecCC-CeeEEEeC--Cee-eee-e--------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 248 HVEAYPP-PAIVWIKE--DTQ-QVL-T--------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 248 ~~~g~p~-~~~~W~~~--~~~-~~~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.+.+.+. +.+.|++. +.. ..+ . ...++.... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 172 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 172 RSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG-----SGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred EECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc-----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 9998876 79999983 222 111 1 111222111 11355799999999999999999998654
No 323
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.81 E-value=1.1e-19 Score=148.99 Aligned_cols=166 Identities=15% Similarity=0.238 Sum_probs=112.4
Q ss_pred EeCCccEEEEEEeeee---CCC-eEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PTP-RISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|+.++|.|.+.+. |.+ .++|++++..+... .........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 4589999999999887 655 89999998765422 1122234579999999999999999999987652
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.++|.|.+.|. |++ .+.|+++|.. +............+......+
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~dgt~~~~s 186 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQP--QENYKNTPPTMDTDGSYFLYS 186 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEE--CCCceecCceECCCCCEEEEE
Confidence 2223322 34567776655444333457899999999984 543 8999999987 432211111111112222345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.|.|.....+|.|.|+|.|.|.....
T Consensus 187 ~l~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 187 KLNVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp EEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEEEChhhcCCCCEEEEEEECCCCCC
Confidence 56777666678999999999987653
No 324
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.81 E-value=7.8e-19 Score=144.30 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=113.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|.+. .+...+.|+|++.......+.. ..+..... ..+|+.+..+ ..++++|.|.++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v 79 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELA 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecC
Confidence 34456677799999999999985 4567899999763321111111 11111110 1345555433 256789999999
Q ss_pred CCCCCeEEEEEeEEccc----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999986521 1122334577764 34443322222234579999999999886 544 899999
Q ss_pred cCeeeCCCCce----E-Ee------eeEEEECCCCCCC-CeEEEEEEecCCC
Q psy8823 172 ENNAILPTGGS----I-YR------GSILKIPQITKED-RGTYYCVAENGVG 211 (386)
Q Consensus 172 ~~~~~~~~~~~----~-~~------~~~l~i~~~~~~d-~g~y~C~~~~~~~ 211 (386)
++..+...... . .. ...|.|......| .|.|+|.+.|...
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 99887543211 1 11 2234455444444 6789999999644
No 325
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=147.45 Aligned_cols=181 Identities=16% Similarity=0.167 Sum_probs=113.9
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeE---Eecc-ceeeecCCCcceEEEEEccc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI---IRDS-RFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~L~i~~~ 103 (386)
...|....+.+|++|+|.|.+.+.+...+.|||.........+....+.... ...+ |+....+.... |.|.++
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~---L~I~~v 81 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE---LRLQVA 81 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC---CEEEEE
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe---EEEccC
Confidence 3345567799999999999988777888999995433221111111111111 1122 66555443322 999999
Q ss_pred CCCCCeEEEEEeEEccc-----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN-----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
+.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+..|+.++|.|.+.+ .|++ .++|+
T Consensus 82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~ 161 (253)
T 3to4_D 82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (253)
T ss_dssp SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence 99999999999975432 1222334566653 3332221111111224689999999988 5555 89999
Q ss_pred EcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCC
Q psy8823 171 RENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVG 211 (386)
Q Consensus 171 ~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 211 (386)
++|..+... +......+.|.|.....+| .|.|+|.+.|...
T Consensus 162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 162 VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp ETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred ECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence 999887542 2222334578888887777 7799999998643
No 326
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.80 E-value=4e-19 Score=137.73 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=106.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC------------CceEE--eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT------------GGSIY--RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~------------~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.+.+|++|+|.|.+.+ |.+.+.|++++..+... ++... .+.+|.|.+++.+|+|.|.|.+.+.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456789999999999854 77899999988654211 11111 3468999999999999999999987
Q ss_pred CCCceeeeEEEEEEecc---eEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 210 VGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
.+ ...+.|.|..++ .+..... ...|.|.+.+.|.|.+.|++++.. +....
T Consensus 83 ~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~--l~~~~-------------- 135 (171)
T 1ccz_A 83 TD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEH--LRSLR-------------- 135 (171)
T ss_dssp CS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEE--EEEES--------------
T ss_pred CC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEE--CcCCc--------------
Confidence 66 466778886643 2322111 137999999999999999999987 33211
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
...|.+. ..+|.|.|+|.|.|..|..+.++.|
T Consensus 136 ~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 136 QKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp SSEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred ceEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence 1223333 4778999999999999998877665
No 327
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.80 E-value=1.9e-18 Score=142.85 Aligned_cols=172 Identities=13% Similarity=0.189 Sum_probs=116.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEc----------------CeeeCCC---CceEE-----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRE----------------NNAILPT---GGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~----------------~~~~~~~---~~~~~-----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+|. +...... .+... ....|.|.+++.+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 87 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 87 (246)
T ss_dssp CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence 3456788999999999998888889999982 2222111 11111 1347999999999
Q ss_pred CCeEEEEEEecCCC---CceeeeEEEEEEe------cceEee-CCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCee
Q psy8823 198 DRGTYYCVAENGVG---KGTRRNIAVEVEF------APVITV-PKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQ 265 (386)
Q Consensus 198 d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~ 265 (386)
|+|.|+|.+.+..+ ........+.|.. +|.+.. .+....+..|+.++|.|.+.|.|++ .+.|++++..
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 167 (246)
T 4dzb_B 88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 167 (246)
T ss_dssp GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence 99999999987542 1123445666653 455443 3334445669999999999997665 8999999987
Q ss_pred eeeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 266 QVLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 266 ~~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+........... ........+.|.|.....+| +|.|+|.|.|......
T Consensus 168 --l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 168 --VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp --ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred --CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 544322211110 01112234568899988888 9999999999876655
No 328
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.80 E-value=7.9e-20 Score=148.06 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=112.8
Q ss_pred ccCCeeeeecccee--eecCCcEEEEEEEeeC---C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcce
Q psy8823 22 QRTPTISYISQEQI--KDIGGTVELKCSVQYA---Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95 (386)
Q Consensus 22 ~~~p~i~~~~~~~~--v~~G~~v~L~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (386)
..+|.+.+.++... +.+|++++|.|.+.+. + .+.|.|+|++..+..... .......++++. ..
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~----~~~~~~~~~~~~-------~~ 75 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT----QTHREDYNSTIR-------VV 75 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEE----EEEEETTTTEEE-------EE
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccc----ccccccCCCeEE-------EE
Confidence 45677877766655 7899999999999876 3 367999998854421100 000000011111 23
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
.+|.|.+++.+|+|.|+|.+.+..... ....+.+ .+..+|.+......... .+|+.++|.|.+.| .|.+ .++|+
T Consensus 76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~ 154 (218)
T 2rgs_A 76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWT 154 (218)
T ss_dssp EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEE
Confidence 489999999999999999999865432 2233322 34455655432222111 25899999999998 4655 89999
Q ss_pred EcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 155 k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 155 SNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp ETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 99987643211 1112234556665556799999999997654
No 329
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.80 E-value=9.2e-19 Score=144.88 Aligned_cols=180 Identities=21% Similarity=0.326 Sum_probs=104.6
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|||.........+. ... +..... ..+|+....+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 34566789999999999998654 5679999976432111111 111 111111 1356666555456678999999
Q ss_pred cCCCCCeEEEEEeEEccc----------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC
Q psy8823 103 IQETDAGYYRCQVIIGIN----------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~ 165 (386)
++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~~g~~P~p 164 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEP 164 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSC
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEEeeEECCC
Confidence 999999999999987542 1 122345777764 3444332222 235679999999999886 666
Q ss_pred -eEEEEEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 166 -RISWRRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 166 -~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.++|++++..+.. .++.....+.|.|.+...+| |.|+|.+.|...
T Consensus 165 i~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~ 218 (257)
T 3bn9_D 165 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 218 (257)
T ss_dssp CEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred cEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence 8999998875311 11122234568888888778 999999999543
No 330
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.80 E-value=1.5e-19 Score=140.09 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=103.9
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
....+.+|++|+|.|.+. .+.+.|.|++++..+. ....+. .. ..+++..+......+++|.|.+++.+|+|.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~----~~~~~~-~~-~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y 75 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVA----ELENSE-FR-AFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 75 (171)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEE----EEETTE-EE-ECGGGTTSEEECTTTCCEEECSCCGGGCEEE
T ss_pred cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEE----EEcCCC-cc-cccccCCcEEEeCCCCeEEECCCChhhCceE
Confidence 345688999999999985 4778899999875321 111111 11 1112222221122345899999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKI 191 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i 191 (386)
+|.+.+..+ +..+.|.|..++..+ .+..... ...|.|.+.+.|.+.++|++++..+.... ...|.+
T Consensus 76 ~C~~~n~~~---~~~~~L~V~~~~~~p-----~i~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~~-----~~~l~~ 141 (171)
T 1ccz_A 76 EMESPNITD---TMKFFLYVLEMVSKP-----MIYWECS-NATLTCEVLEGTDVELKLYQGKEHLRSLR-----QKTMSY 141 (171)
T ss_dssp EEECTTCCS---CEEEEEEEECCCCCC-----EEEEETT-TTEEEEECSSCSSCEEEEEETTEEEEEES-----SSEEEE
T ss_pred EEEEeCCCC---cEEEEEEEECcCCCC-----EEEEecC-CcEEEEEeCCCCCcEEEEEECCEECcCCc-----ceEEEE
Confidence 999975433 667788887653211 1112111 23799999888899999999998764221 123333
Q ss_pred CCCCCCCCeEEEEEEecCCCC
Q psy8823 192 PQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 192 ~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. ...|.|.|+|.|.|..+.
T Consensus 142 ~--~~~~~g~Y~C~a~N~~~~ 160 (171)
T 1ccz_A 142 Q--WTNLRAPFKCKAVNRVSQ 160 (171)
T ss_dssp E--CSCCSSCEEEEEEETTEE
T ss_pred e--ccCCCceEEEEEEcccCc
Confidence 3 367899999999998876
No 331
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.80 E-value=3.1e-17 Score=130.16 Aligned_cols=250 Identities=18% Similarity=0.199 Sum_probs=160.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-C---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-Q---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.+.+.|....+..|+.++|.|.+.+. | +..++|+|++..+.. ....|.|
T Consensus 3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--------------------------aT~tLti 56 (304)
T 3shs_A 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--------------------------NTATLTV 56 (304)
T ss_dssp EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--------------------------CSSEEEE
T ss_pred cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--------------------------CcceEEe
Confidence 457777888889999999999998754 4 457999998754210 1127899
Q ss_pred cccCCCCCeEEEEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe--e-eeC-----CCeEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA--G-GHP-----TPRISWRR 171 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~--~-~~~-----~~~v~W~~ 171 (386)
..+...|+|.|+|.+.+..+.. .+..+.+.....+.+....+....+..|..+.|.+.+ . |.+ ...++|++
T Consensus 57 ~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK 136 (304)
T 3shs_A 57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136 (304)
T ss_dssp SSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred eeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence 9999999999999998765433 2333434433333444444566667778899999887 4 344 45899999
Q ss_pred cCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC-CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-
Q psy8823 172 ENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV- 249 (386)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~- 249 (386)
++..+... ..|++...+..++|.|+|++.+..+ ...+....+.+..-+...-...+..+..|+.+.|.-.+
T Consensus 137 ngt~IsgA-------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 209 (304)
T 3shs_A 137 GEDVIDTT-------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209 (304)
T ss_dssp TTEEEESS-------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEE
T ss_pred CCeEccCc-------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEe
Confidence 99876322 2467778888999999999999765 44555666655433333333345567778888887654
Q ss_pred -------EecCCC--eeEEEeC--Ceee--eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 250 -------EAYPPP--AIVWIKE--DTQQ--VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 250 -------~g~p~~--~~~W~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.|.|.. ++.|+.. |+.. .+.......+..+. ...++.|.-..+..+|...|.|.|.-.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 3shs_A 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFS---ITPDGHLFKESATYDDTAKFWCVAKLY 280 (304)
T ss_dssp EECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEE---ECTTSCEEESSCCGGGCEEEEEEEEEE
T ss_pred eccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccce---eCCCcceeecccccccchheeeHHHHH
Confidence 233333 4678743 3220 01111000000000 113456777778889999999998643
No 332
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.80 E-value=7.1e-18 Score=133.05 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=113.6
Q ss_pred eeeeccc--eeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQE--QIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~--~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.+.++. ..+.+|++++|.|.+ +.+.+ .|+|++.+..+ +. ... ......|.|.+
T Consensus 8 ~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---------~~--------~~~----~~~~~~L~I~~ 65 (210)
T 1gsm_A 8 LQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---------GA--------VQS----DTGRSVLTVRN 65 (210)
T ss_dssp EEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---------CC--------EEE----ESSEEEEEECS
T ss_pred EEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---------Cc--------EEe----cCCccEEEECc
Confidence 4444544 478999999999999 67666 89999955322 11 000 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC----CeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT----PRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~----~~v~W~~~~~~~~ 177 (386)
++.+|+|.|.|.+.+.. ...++.+.|.|+.+|......+. ...+|+.+ |.|.+.+. |. +.++|+|++..+.
T Consensus 66 v~~~d~G~Y~C~a~n~~-~~~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~ 141 (210)
T 1gsm_A 66 ASLSAAGTRVCVGSCGG-RTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELE 141 (210)
T ss_dssp CCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred cCcccCceEEEEEEeCC-CceEEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence 99999999999999764 44678899999998865543222 45578888 99999876 53 3799999998874
Q ss_pred CCCc------------------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 178 PTGG------------------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 178 ~~~~------------------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.... ...-.++|.+.....+|.+.|+|.|.+....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 142 GAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPG 194 (210)
T ss_dssp TCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred cccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence 3321 0111345666677777778999999986543
No 333
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.80 E-value=1.9e-19 Score=147.12 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=110.9
Q ss_pred EEEeCCccEEEEEEeeee-CC-C-eEEEEEcCeee-CCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGH-PT-P-RISWRRENNAI-LPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+|+.++|.|.+.+. |. + .++|+++|..+ .... +.......|.|.++..+|+|.|+|.+.|..+.
T Consensus 23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~ 102 (231)
T 2w59_A 23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP 102 (231)
T ss_dssp HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence 345689999999999885 53 4 99999998776 2211 11223457999999999999999999997654
Q ss_pred ceeeeEEEEEE------ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeEE--eee---
Q psy8823 213 GTRRNIAVEVE------FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYSI--SHF--- 279 (386)
Q Consensus 213 ~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~--~~~--- 279 (386)
. .+.+.|. .+|.+.+..+......+..++|.|.+.|. |+ +.+.|+++|.. +........ ...
T Consensus 103 -~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~ 177 (231)
T 2w59_A 103 -L--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRA--VPATEFVTTAVLPEERT 177 (231)
T ss_dssp -S--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--CCGGGCEECCCEECCTT
T ss_pred -C--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEE--CCCcccccCccccCccc
Confidence 2 2233332 45655543332222335579999999986 43 58999999988 433321110 110
Q ss_pred -----ee-cCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 280 -----AT-ADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 -----~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.+ ..+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 11 222345778899999999999999999987653
No 334
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.80 E-value=1.4e-18 Score=144.32 Aligned_cols=178 Identities=21% Similarity=0.330 Sum_probs=110.3
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccC-CceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IST-GSSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.|++.........+. ... +.... ...+|+....+...++++|.|.++
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL 109 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence 345678999999999999753 24569999865432211111 111 11111 113566666666667889999999
Q ss_pred CCCCCeEEEEEeEEcc----------cceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-C-CCeE
Q psy8823 104 QETDAGYYRCQVIIGI----------NNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-P-TPRI 167 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~----------~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v 167 (386)
+.+|+|.|.|.+.+.. .........|.|.. +|.+....+ ...+.+|+.++|.|.+.+. | +..+
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~~~~p~~~~v 188 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTV 188 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC-C-----TTEEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC-CcccccCCcEEEEEEEEEEECCCeEE
Confidence 9999999999987532 01123344566652 333332112 1235679999999999774 4 3479
Q ss_pred EEEEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 168 SWRRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 168 ~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.| ++..+.. .+......+.|.|.+...+| |.|+|.+.|....
T Consensus 189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~ 240 (256)
T 3sob_H 189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 240 (256)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC
Confidence 99 5444321 11222334579999999999 9999999997654
No 335
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=143.69 Aligned_cols=181 Identities=16% Similarity=0.245 Sum_probs=116.5
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|+........+ .... +..... ..+|+.+..+...++.+|.|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 35667799999999999998765 567999997532211111 1111 111111 1346655544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
++.+|+|.|.|.+.+.... .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 9999999999999864321 122345777764 34333222221 25679999999999875 665 899999886
Q ss_pred eeCCC--C-----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 175 AILPT--G-----GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 175 ~~~~~--~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+... . ......+.|.|.+...+| |.|+|.+.|....
T Consensus 171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 53210 0 122235679999988888 9999999985543
No 336
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.79 E-value=1.1e-18 Score=142.53 Aligned_cols=172 Identities=18% Similarity=0.313 Sum_probs=113.0
Q ss_pred eEEEeCCccEEEEEEeeeeCC----CeEEEEEcC--eee---C-------------CCCceEE------eeeEEEECCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT----PRISWRREN--NAI---L-------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~---~-------------~~~~~~~------~~~~l~i~~~~ 195 (386)
.+.+.+|++++|.|.+.+.+. +.+.|+++. ... . ...+... ....|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 346889999999999987764 789999853 211 0 0111111 13689999999
Q ss_pred CCCCeEEEEEEecCCC------C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEe
Q psy8823 196 KEDRGTYYCVAENGVG------K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIK 261 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~ 261 (386)
.+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~ 168 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 168 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence 9999999999988653 1 111235666763 4555543333445789999999999986 777 999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
++....... ..... ........+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 169 ~~~~~~~~~--~~~~~--~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 169 GSLSSGVHT--FPAVL--QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp GTCCTTEEE--EEEEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred CCcccCceE--cCcee--CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 886521111 00111 01112245679999988866 99999999999887665543
No 337
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.79 E-value=4.2e-18 Score=143.65 Aligned_cols=175 Identities=18% Similarity=0.318 Sum_probs=117.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--eeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++. ... ...+.... ...|.|.+++
T Consensus 34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 113 (282)
T 1qok_A 34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT 113 (282)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence 356788999999999998764 57899999641 110 01111111 2579999999
Q ss_pred CCCCeEEEEEEecCCC---C-ceeeeEEEEEEecc---------------eEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 196 KEDRGTYYCVAENGVG---K-GTRRNIAVEVEFAP---------------VITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~---~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
.+|+|.|+|.+.|..+ . .......|.|...| .+...+....+.+|++++|.|.+.+.| +.
T Consensus 114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~ 192 (282)
T 1qok_A 114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY 192 (282)
T ss_dssp GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC
T ss_pred hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce
Confidence 9999999999998765 1 11234467776543 234445556788999999999999998 89
Q ss_pred eEEEe--CCeeee-ee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEE
Q psy8823 257 IVWIK--EDTQQV-LT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFES 323 (386)
Q Consensus 257 ~~W~~--~~~~~~-~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 323 (386)
+.|++ ++.... +. . ..++.... ......|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 193 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 193 MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEecCCCCcccCCeEEec-----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 99999 554321 10 0 12222110 1135679999999999999999999864322 334566664
No 338
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.79 E-value=3.1e-18 Score=141.00 Aligned_cols=166 Identities=16% Similarity=0.216 Sum_probs=112.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC----CCeEEEEEcC--eee---CC---------CCceEE----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP----TPRISWRREN--NAI---LP---------TGGSIY----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ... .. ..+... ....|.|.+++.+|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (240)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence 4456788999999999998887 6789999963 211 00 011111 123799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEecc------eEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCC--eee-ee
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFAP------VITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKED--TQQ-VL 268 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~--~~~-~~ 268 (386)
|.|+|.+.|..+........|.|..++ .....+....+.+|++++|.|.+.+.|. +.+.|+++. ... .+
T Consensus 88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~ 167 (240)
T 1moe_A 88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI 167 (240)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence 999999998765433445667776643 2333455567889999999999999874 589999962 221 01
Q ss_pred ---e-----------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 269 ---T-----------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 269 ---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
. ...++.... ........|.|.+++.+|+|.|+|.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 168 GRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred EEEcccCCccccCccccccEEEEE---cccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 0 011121111 01123467999999999999999999853
No 339
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.79 E-value=5.1e-18 Score=138.76 Aligned_cols=177 Identities=16% Similarity=0.269 Sum_probs=111.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC-------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL-------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~-------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +. ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 35688999999999997754 5689999853 11 10 01111111 238999999999
Q ss_pred CCeEEEEEEec--CCCC---ceeeeEEEEEEe----cceEeeCCCcccccCC-CcEEEEEEEEec-CCC-eeEEEe-CCe
Q psy8823 198 DRGTYYCVAEN--GVGK---GTRRNIAVEVEF----APVITVPKPRLGQALQ-YDMDLECHVEAY-PPP-AIVWIK-EDT 264 (386)
Q Consensus 198 d~g~y~C~~~~--~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~g~-p~~-~~~W~~-~~~ 264 (386)
|+|.|.|.+.+ ..+. .......|.|.. +|.+....+...+..| +.++|.|.+.|. |.+ .+.|++ ++.
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS 168 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence 99999999984 2111 122345677754 3444432222234577 999999999886 776 999999 877
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeeccc--CCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEK--RQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
. +....... .......+...+.|.|.+... +|.|.|+|.|.|..+.......+.+.
T Consensus 169 ~--l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 169 D--ISSTRGFP-SVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp E--ECCEEECC-CEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred c--eeeEEECC-ccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 6 32210000 000111222356789988887 88999999999999988777766554
No 340
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.79 E-value=3e-18 Score=141.75 Aligned_cols=166 Identities=14% Similarity=0.252 Sum_probs=109.8
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--eee---CC---------CCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NAI---LP---------TGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ... .. ..+... ....|.|.+++.+|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 87 (247)
T 1svz_A 8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 87 (247)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence 3556788999999999998877 6789999853 111 00 111111 13479999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecc-------------eEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAP-------------VITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED 263 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~ 263 (386)
+|.|+|.+.|..+........|.|..++ .....++...+.+|++++|.|.+.+.+ .+.+.|++++
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~ 167 (247)
T 1svz_A 88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA 167 (247)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence 9999999998754323334566665542 122233344588999999999999875 4689999863
Q ss_pred --eee-eee---c-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 264 --TQQ-VLT---N-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 264 --~~~-~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
... .+. . ..++..... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLD---TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCCCcEEEEEEEcCCCccccCccccCcEEEEEe---cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 211 010 0 112221110 1123568999999999999999999995
No 341
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.79 E-value=6.3e-19 Score=141.54 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred Ceeeeeccc-ee-eecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQE-QI-KDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~-~~-v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.++. .. +.+|++++|.|.+.+.+ ...|.|+|++..+...... ......++++. ....|
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~----~~~~~~~~~~~-------~~~~L 70 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK----PREEQFNSTFR-------SVSEL 70 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE----CCCEETTTEEE-------EEEEE
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC----CCcCcCCCcEE-------EEEEE
Confidence 445554443 34 78999999999998763 3479999988543211000 00001111221 23479
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ..+|+.++|.|.+.|. |+ +.++|+++|
T Consensus 71 ~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 2vol_A 71 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNG 149 (207)
T ss_dssp ECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence 999999999999999999765432 2333433 4455665543222211 1258999999999885 44 389999999
Q ss_pred eeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 87643211 1112234667766667899999999997654
No 342
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.79 E-value=4.8e-18 Score=137.31 Aligned_cols=178 Identities=22% Similarity=0.261 Sum_probs=111.0
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-cCCceeE---EeccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-STGSSLI---IRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|....+.+|++|+|.|.+.+.+ ...+.|+|+........+.. ..+.... ...+|+.+..+...++++|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5566789999999999998654 46799999753221111111 1111000 0134666554444567899999999
Q ss_pred CCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeee
Q psy8823 105 ETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAI 176 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~ 176 (386)
.+|+|.|.|.+.+..+. .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|++++..+
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 165 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS 165 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence 99999999999865311 122345677763 33333211111 24679999999999886 777 99999988653
Q ss_pred CCCC-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 177 LPTG-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 177 ~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.... ........|. ....+| |.|+|.+.|..+.
T Consensus 166 ~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~ 205 (215)
T 1c5d_H 166 DVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASS 205 (215)
T ss_dssp SCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGT
T ss_pred ceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCC
Confidence 2111 1111122344 444456 9999999997765
No 343
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.2e-18 Score=141.10 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=108.9
Q ss_pred ceEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--ee---C---------CCCceEE----eeeEEEECCCCCCCCeEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGH--PTPRISWRRENN--AI---L---------PTGGSIY----RGSILKIPQITKEDRGTY 202 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~---~---------~~~~~~~----~~~~l~i~~~~~~d~g~y 202 (386)
..+.+.+|++++|.|.+.+. +.+.+.|+|+.. .. . ...+... ....|.|.+++.+|+|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY 89 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence 45678999999999999876 678899998531 11 0 0011111 134799999999999999
Q ss_pred EEEEecCCCC--ceeeeEEEEEEecc---------------------eEeeCCCcccccCCCcEEEEEEEEecC--CCee
Q psy8823 203 YCVAENGVGK--GTRRNIAVEVEFAP---------------------VITVPKPRLGQALQYDMDLECHVEAYP--PPAI 257 (386)
Q Consensus 203 ~C~~~~~~~~--~~~~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~ 257 (386)
+|.+.+..+. .......|.|..++ .+.. +....+.+|++++|.|.+.+.+ .+.+
T Consensus 90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v 168 (256)
T 3ux9_B 90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAM 168 (256)
T ss_dssp EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence 9999986542 12234566666544 2222 2334578899999999999877 6799
Q ss_pred EEEeCC--eeee-e---ec-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 258 VWIKED--TQQV-L---TN-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 258 ~W~~~~--~~~~-~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.|+++. .... + .. ..++..... .......|.|.+++.+|+|.|+|.|.|..
T Consensus 169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD---NSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec---CCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 999863 2210 0 00 012222111 11235579999999999999999999974
No 344
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.79 E-value=8.2e-19 Score=141.88 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=105.0
Q ss_pred eccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccCCceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-ISTGSSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.+....+.+|++|+|.|.+.+. +...+.|+|.........+. ...+.... ...+|+.... ..++++|.|.++
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 82 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK--TSTTVDLKITSP 82 (215)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--CSSEEEEEESSC
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--eCCEEEEEECCC
Confidence 4566779999999999999753 35679999865432211111 11111101 1134555544 456779999999
Q ss_pred CCCCCeEEEEEeEEcccc---eeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCe
Q psy8823 104 QETDAGYYRCQVIIGINN---KISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENN 174 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~ 174 (386)
+.+|+|.|.|.+.+..+. .......|.|. .+|.+....+.. .+.+|+.++|.|.+.+.+++ .+.|++++.
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 161 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCC-GDTPSSTVTLGCLVKGYLPEPVTVTWNSGTL 161 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCT-TCCC--CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCc-cccCCCcEEEEEEEeeeeCCCeEEEEeeCCE
Confidence 999999999999865331 13344567776 344443211111 34579999999999886543 578999886
Q ss_pred eeCCCCc--eEEeeeEEEE---CCCCCCCCeEEEEEEecCCCC
Q psy8823 175 AILPTGG--SIYRGSILKI---PQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 175 ~~~~~~~--~~~~~~~l~i---~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+..... ....++.+.+ ..+...| |.|+|.+.|..+.
T Consensus 162 ~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~ 203 (215)
T 3nl4_H 162 TNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATN 203 (215)
T ss_dssp CTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGT
T ss_pred ECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCC
Confidence 4321110 1111122222 3344556 9999999997765
No 345
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.78 E-value=3.4e-18 Score=133.67 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=107.1
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEc-CeeeC------------CC--CceEE--eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRE-NNAIL------------PT--GGSIY--RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~------------~~--~~~~~--~~~~l~i~~~~~~d~g~y~ 203 (386)
...+.+.+|++++|.|.+.+ .+.+.+.|+++ +..+. .. .+... .+.+|.|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 34567899999999998844 34678999994 32221 00 11111 3467999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecc---eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
|.+.+.. .....+.|.|..++ .+.. .+..++|.|.+ .| |.|.+.|++++.. +..
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~--l~~--------- 143 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEH--LRS--------- 143 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEE--EEE---------
T ss_pred EEEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeE--CcC---------
Confidence 9998765 35667788886542 2221 34569999999 56 8999999999987 320
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
....+|.+.. .+|+|.|+|.|.|..+....+..+
T Consensus 144 -----~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 -----LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp -----ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred -----CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 0234455533 789999999999999988776554
No 346
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.78 E-value=1.1e-17 Score=138.07 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=115.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee-------------CC-CCceEE-----eeeEEEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI-------------LP-TGGSIY-----RGSILKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~-------------~~-~~~~~~-----~~~~l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|++.. ... .. ..+... ....|.|.+++.+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 87 (245)
T 3nfj_J 8 PATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSG 87 (245)
T ss_dssp CSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCGGGCE
T ss_pred CceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCChhhCE
Confidence 45667889999999999998888999999832 110 00 011111 1347999999999999
Q ss_pred EEEEEEecCC-----CCceeeeEEEEEEe------cceEeeC-CCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeee
Q psy8823 201 TYYCVAENGV-----GKGTRRNIAVEVEF------APVITVP-KPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQ 266 (386)
Q Consensus 201 ~y~C~~~~~~-----~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 266 (386)
.|+|.+.+.. .........+.|.. +|.+... +....+..|+.++|.|.+.|. |++ .+.|++++..
T Consensus 88 ~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~- 166 (245)
T 3nfj_J 88 FYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKE- 166 (245)
T ss_dssp EEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-
T ss_pred EEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEE-
Confidence 9999999832 22223445666764 5555432 333334568999999999985 444 7899999987
Q ss_pred eeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCceee
Q psy8823 267 VLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEK 316 (386)
Q Consensus 267 ~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 316 (386)
+........... ........+.|.|.....+| +|.|+|.|.|.......
T Consensus 167 -l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~~ 222 (245)
T 3nfj_J 167 -VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEND 222 (245)
T ss_dssp -ECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSSS
T ss_pred -CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCcc
Confidence 443322111000 11222234678898888888 77999999999776654
No 347
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.78 E-value=4.3e-18 Score=138.29 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=109.5
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee--e------CC-------------CCceEE------eeeEEEECCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENNA--I------LP-------------TGGSIY------RGSILKIPQI 194 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~--~------~~-------------~~~~~~------~~~~l~i~~~ 194 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++.... . .. ..+... ....|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 45688999999999997643 568999984311 0 00 011111 1236999999
Q ss_pred CCCCCeEEEEEEecCCC-CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCC-C-eeEEEeCCeee
Q psy8823 195 TKEDRGTYYCVAENGVG-KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPP-P-AIVWIKEDTQQ 266 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~-~~~W~~~~~~~ 266 (386)
+.+|+|.|.|.+.+... ........+.|. .+|.+....+... ..|+.++|.|.+.+ .|. + .+.|++++..+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~ 167 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV 167 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence 99999999999988641 212334456664 2444442222222 68999999999998 776 4 89999998763
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....... ............+.|.|..+..+|+|.|+|.|.|..+...
T Consensus 168 ~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 168 TARNFPP--SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp EEEECCC--EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEEcCc--eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 2111100 0001112222356799999999999999999999986543
No 348
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.78 E-value=4.6e-18 Score=142.02 Aligned_cols=209 Identities=15% Similarity=0.266 Sum_probs=110.0
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
....+.+|+++.|.|.+....+..+.|.-. ++......+ .....+.+.+++.+ |.|.|.+.... ....+.+.+.
T Consensus 7 ~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g--~~~~~~~l~~v~~~--~~y~C~~~~~~-~~~~~~v~l~ 81 (291)
T 1mq8_A 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG--NNRKVYELSNVQED--SQPMCYSNCPD-GQSTAKTFLT 81 (291)
T ss_dssp SEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSC--SSEEEEEEESCCSC--CCCEEEEECSS-CEEEEECEEE
T ss_pred CccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCC--CceEEEEEEecccC--CeEEEEEEcCC-ccEEEEEEEE
Confidence 356789999999999996544445888631 111110111 11224788888743 46999997543 4467788899
Q ss_pred EEecceEe-eCCCcccccCCCcEEEEEEEEecCCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 222 VEFAPVIT-VPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 222 v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
|..+|... +......+.+|+.++|.|.+.|.+++ +++|++++.. +..... . .......|.+.....
T Consensus 82 V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~--l~~~~~------~--~~~~~~~l~~~~~~~ 151 (291)
T 1mq8_A 82 VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE--LKREPA------V--GEPAEVTTTVLVRRD 151 (291)
T ss_dssp ECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSE--EEEEEC------C--BTTEEEEEECCCSSS
T ss_pred EecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEE--eecccC------C--CCCceEEEEeeeeec
Confidence 98887533 33333558889999999999875443 5899999977 332210 0 112356678888888
Q ss_pred CCCeEEEEEEEcCCCc--------eeeEEEEEEEecCCCCCC-CCCceeecCcceeeeEEecCC-C-----CCcccccce
Q psy8823 298 RQYGSYICRAANKLGT--------SEKTVELFESIIPVCPPQ-TQPSELLPLRNVNMAVIFAEQ-P-----TSWEPQRKQ 362 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~p~~~~~-~~~~~~~~~~~~~~~c~~~~~-p-----~~W~~~~~~ 362 (386)
+|++.|+|+|.|..+. .++...|.|.+.|...+. ..+..+..|+.++|+|.+.|. | +.|.++|+.
T Consensus 152 D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~ 231 (291)
T 1mq8_A 152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (291)
T ss_dssp CSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------------------
T ss_pred cCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEe
Confidence 8888999999998663 345677888877654332 223356689999999999886 3 689999999
Q ss_pred eeec
Q psy8823 363 LNCS 366 (386)
Q Consensus 363 l~~~ 366 (386)
+...
T Consensus 232 l~~~ 235 (291)
T 1mq8_A 232 LNPT 235 (291)
T ss_dssp ----
T ss_pred cCce
Confidence 8754
No 349
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.78 E-value=1.4e-17 Score=137.21 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=115.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcC--ee---eC--------------CCCceEE------eeeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRREN--NA---IL--------------PTGGSIY------RGSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~---~~--------------~~~~~~~------~~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ...+... ....|.|.+
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence 3456788999999999999775 56789999853 11 10 0111111 145799999
Q ss_pred CCCCCCeEEEEEEecCCC-C-----ceeeeEEEEEEec-------ceEeeC-CCcccccCCCcEEEEEEEEec-CC-Cee
Q psy8823 194 ITKEDRGTYYCVAENGVG-K-----GTRRNIAVEVEFA-------PVITVP-KPRLGQALQYDMDLECHVEAY-PP-PAI 257 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~ 257 (386)
++.+|+|.|.|.+.+... . .......|.|... |...+. +....+..|+.++|.|.+.|. |. +.+
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v 166 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI 166 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence 999999999999987531 1 1123456777653 333222 223345579999999999986 64 589
Q ss_pred EEEeCCe-eeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 258 VWIKEDT-QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 258 ~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|++++. . +......... .....+...+.|.|.++.. | |.|+|.|.|..+....+..+.+
T Consensus 167 ~W~~~~~~~--l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 167 HWEEKKSNT--ILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EEEESSSCC--CCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred EEEcCCCEe--ecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 9999987 4 2111100010 1112223456788888775 5 9999999999998766666544
No 350
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.78 E-value=3e-18 Score=142.06 Aligned_cols=184 Identities=16% Similarity=0.264 Sum_probs=114.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccccc-CCceeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS-TGSSLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|.+. .+...+.|+++........+... ...... ...+|+....+ ..++++|.|.++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v 83 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSA 83 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECcC
Confidence 44556677799999999999985 45678999997533211111111 111111 01345555432 245668999999
Q ss_pred CCCCCeEEEEEeEEcc--cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 104 QETDAGYYRCQVIIGI--NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
+.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.++|.|.+.+. |. +.++|++++
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 9999999999998641 11112234566653 34333222222223468899999999886 54 489999999
Q ss_pred eeeCCCCc---------------eEEeeeEEEECCCCCC-CCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------------SIYRGSILKIPQITKE-DRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------------~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.|.+.... |.|.|+|.+.|....
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 87654311 1122345778776654 577999999997543
No 351
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.78 E-value=1.9e-17 Score=138.05 Aligned_cols=166 Identities=14% Similarity=0.240 Sum_probs=111.2
Q ss_pred CceEEEeCCccEEEEEEeeeeC------CCeEEEEEcC--eee---C---------CCCceEE----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP------TPRISWRREN--NAI---L---------PTGGSIY----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~------~~~v~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ..+ . ...+... ....|.|.+++.+
T Consensus 12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 91 (264)
T 2gjj_A 12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE 91 (264)
T ss_dssp CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence 4556789999999999998776 5789999853 211 0 0111111 1348999999999
Q ss_pred CCeEEEEEEecCCCCceeeeEEEEEEecc------------------eE-eeCCCcccccCCCcEEEEEEEEecCC--Ce
Q psy8823 198 DRGTYYCVAENGVGKGTRRNIAVEVEFAP------------------VI-TVPKPRLGQALQYDMDLECHVEAYPP--PA 256 (386)
Q Consensus 198 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~g~p~--~~ 256 (386)
|+|.|.|.+.+..+........|.|..+| .+ ...++...+.+|++++|.|.+.+.+. +.
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 171 (264)
T 2gjj_A 92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYF 171 (264)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeE
Confidence 99999999998654323334567776653 11 12233346889999999999998874 78
Q ss_pred eEEEeCC--eee-eee---c-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 257 IVWIKED--TQQ-VLT---N-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 257 ~~W~~~~--~~~-~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.|+++. ... .+. . ..++.+.. . .......|.|.+++.+|+|.|+|.|.|.
T Consensus 172 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 172 INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV--D-TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE--E-TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE--c-CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 9999863 211 111 0 11121110 0 1123568999999999999999999995
No 352
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.77 E-value=1.5e-17 Score=136.92 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=113.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--------------eeCC---CCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--------------AILP---TGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--------------~~~~---~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+ +.+.+.|+|... .... ..+... ....|.|.+++.+|+
T Consensus 9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 87 (240)
T 3q5y_A 9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS 87 (240)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence 34567899999999999876 677899998321 1000 011111 134799999999999
Q ss_pred eEEEEEEec--CCCCceeeeEEEEEE------ecceEee-CCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeee
Q psy8823 200 GTYYCVAEN--GVGKGTRRNIAVEVE------FAPVITV-PKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVL 268 (386)
Q Consensus 200 g~y~C~~~~--~~~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~ 268 (386)
|.|+|.+.+ ...........+.|. .+|.+.. .+....+..|+.++|.|.+.| .|++ .+.|++++.. +
T Consensus 88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~--l 165 (240)
T 3q5y_A 88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE--V 165 (240)
T ss_dssp EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--E
T ss_pred EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE--C
Confidence 999999983 222223344566665 3455543 333345566899999999998 5656 7999999987 4
Q ss_pred ecCceeEE--eeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCceee
Q psy8823 269 TNNQHYSI--SHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEK 316 (386)
Q Consensus 269 ~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 316 (386)
........ ...........+.|.|.....+| +|.|+|.|.|.......
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~ 216 (240)
T 3q5y_A 166 HSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEED 216 (240)
T ss_dssp CTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred cCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCcc
Confidence 43322210 11111112235669999999888 77999999998765544
No 353
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.77 E-value=1.9e-17 Score=138.66 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=114.5
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee------------CCC----CceEE-----eeeEEEECCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI------------LPT----GGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~------------~~~----~~~~~-----~~~~l~i~~~~~~ 197 (386)
.+..+.+.+|++++|.|.+. .+.+.+.|+|.. ... ... .+... ....|.|.+++.+
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 110 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG 110 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred CCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence 34567789999999999986 467789999832 110 000 11111 1457999999999
Q ss_pred CCeEEEEEEecCC-CCceeeeEEEEEEe------cceEee-CCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeee
Q psy8823 198 DRGTYYCVAENGV-GKGTRRNIAVEVEF------APVITV-PKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQV 267 (386)
Q Consensus 198 d~g~y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~ 267 (386)
|+|.|+|.+.+.. .........+.|.. +|.+.. .+....+..|+.++|.|.+.|.+++ .+.|+++|..
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~-- 188 (268)
T 3pl6_D 111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-- 188 (268)
T ss_dssp GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE--
T ss_pred cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE--
Confidence 9999999999742 22233445666664 455443 3334445569999999999986654 8999999887
Q ss_pred eecCceeEEee------eeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCceee
Q psy8823 268 LTNNQHYSISH------FATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEK 316 (386)
Q Consensus 268 ~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 316 (386)
+.......... .........+.|.|.....+| +|.|+|.|.|.......
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~~ 244 (268)
T 3pl6_D 189 VHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEND 244 (268)
T ss_dssp ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred CCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCCc
Confidence 44332211000 011222234678888888887 99999999998765544
No 354
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.77 E-value=6.8e-18 Score=140.61 Aligned_cols=166 Identities=17% Similarity=0.290 Sum_probs=106.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee---CCCC--------------ce------EEeeeEEEECCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI---LPTG--------------GS------IYRGSILKIPQITK 196 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~~~~--------------~~------~~~~~~l~i~~~~~ 196 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|++.. ... .... .. ......|.|.+++.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 88 (259)
T 3omz_A 9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE 88 (259)
T ss_dssp --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence 45677899999999999988888899999832 110 0000 00 01234699999999
Q ss_pred CCCeEEEEEEecCCCC--ceeeeEEEEEEec-----------------ceEeeCCCcccccCCCcEEEEEEEEec-CCCe
Q psy8823 197 EDRGTYYCVAENGVGK--GTRRNIAVEVEFA-----------------PVITVPKPRLGQALQYDMDLECHVEAY-PPPA 256 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~ 256 (386)
+|+|.|+|.+.+..+. .......|.|... |.+...+....+.+|++++|.|.+.+. |.+.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 168 (259)
T 3omz_A 89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY 168 (259)
T ss_dssp GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence 9999999999987552 2334456666552 455556666788899999999998875 7789
Q ss_pred eEEEeCCe--ee-eeec---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 257 IVWIKEDT--QQ-VLTN---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 257 ~~W~~~~~--~~-~~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.|++... .. .+.. ..++... .........|.|.+++.+|+|.|.|.+.+.
T Consensus 169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVN---FKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp EEEEEECTTCCEEEEEEEETTSCCCEETTEEEC---CBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEE---EcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 99998542 10 0100 0111110 001123467999999999999999999864
No 355
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.77 E-value=1.3e-18 Score=144.34 Aligned_cols=175 Identities=17% Similarity=0.289 Sum_probs=114.2
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e--eC-----C----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A--IL-----P----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~--~~-----~----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+. +...+.|++... . .. . .++... ....|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS 88 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 4568899999999999763 356799998531 1 00 0 011111 133599999999
Q ss_pred CCCeEEEEEEecCC---CCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeee
Q psy8823 197 EDRGTYYCVAENGV---GKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQV 267 (386)
Q Consensus 197 ~d~g~y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~ 267 (386)
+|+|.|.|.+.+.. .........|.|. .+|.+........+..|+.++|.|.+.| +|.+ .+.|++++....
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~ 168 (253)
T 3liz_H 89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (253)
T ss_dssp GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence 99999999998753 1112333466665 4555554444445667999999999998 6766 899999987421
Q ss_pred eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
........ ....+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus 169 ~~~~~~~~----~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 169 VHTFPAVL----QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEECCCEE----ETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred eEeCCccc----cCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 11111100 00122245789999999999 99999999999988877777655
No 356
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.77 E-value=6.9e-18 Score=142.90 Aligned_cols=179 Identities=16% Similarity=0.260 Sum_probs=115.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--ee---C--------------CCCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AI---L--------------PTGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~---~--------------~~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++.. .. . ...+... ....|.|.+++.
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 110 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS 110 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998765 57899999631 11 0 0011111 135799999999
Q ss_pred CCCeEEEEEEecCC-CC---ceeeeEEEEEEe----------------cceEeeCCCcccccCCCcEEEEEEEEecCCC-
Q psy8823 197 EDRGTYYCVAENGV-GK---GTRRNIAVEVEF----------------APVITVPKPRLGQALQYDMDLECHVEAYPPP- 255 (386)
Q Consensus 197 ~d~g~y~C~~~~~~-~~---~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~- 255 (386)
+|+|.|+|.+.+.. +. .......|.|.. ++.+...+....+.+|++++|.|.+.+.|.+
T Consensus 111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 190 (291)
T 2gki_A 111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNS 190 (291)
T ss_dssp GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEET
T ss_pred HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccc
Confidence 99999999999864 11 111234666655 2234444555678899999999999888765
Q ss_pred -----eeEEEeCC--ee-eeee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eE
Q psy8823 256 -----AIVWIKED--TQ-QVLT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KT 317 (386)
Q Consensus 256 -----~~~W~~~~--~~-~~~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~ 317 (386)
.+.|+++. .. ..+. . ..++.... ......|.|.+++.+|+|.|+|.|.|.....- .-
T Consensus 191 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g 265 (291)
T 2gki_A 191 RTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG 265 (291)
T ss_dssp TTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred cccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe-----cCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCC
Confidence 89999963 21 1111 1 11222110 11346899999999999999999999643221 23
Q ss_pred EEEEEEecCC
Q psy8823 318 VELFESIIPV 327 (386)
Q Consensus 318 ~~l~v~~~p~ 327 (386)
..|.|+..+.
T Consensus 266 t~l~v~~~~~ 275 (291)
T 2gki_A 266 TKLEIKHHHH 275 (291)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEeeEc
Confidence 4555554443
No 357
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.76 E-value=3.2e-17 Score=135.39 Aligned_cols=171 Identities=14% Similarity=0.195 Sum_probs=112.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEc--------------CeeeCCC----CceEE-----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRE--------------NNAILPT----GGSIY-----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--------------~~~~~~~----~~~~~-----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.| ..+.+.+.+.|+|. +...... .+... ....|.|.+++.+|
T Consensus 9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 87 (245)
T 4ei6_B 9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED 87 (245)
T ss_dssp CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence 3456788999999999 65677889999982 1111111 11111 13479999999999
Q ss_pred CeEEEEEEecCC---CCceeeeEEEEEE------ecceEee-CCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeee
Q psy8823 199 RGTYYCVAENGV---GKGTRRNIAVEVE------FAPVITV-PKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQ 266 (386)
Q Consensus 199 ~g~y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 266 (386)
+|.|.|.+.+.. .........+.|. .+|.+.. .+....+..|+.++|.|.+.|. |++ .+.|+++|..
T Consensus 88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~- 166 (245)
T 4ei6_B 88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE- 166 (245)
T ss_dssp CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-
T ss_pred CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEE-
Confidence 999999998532 2223344566665 3555443 3334445669999999999984 445 8999999987
Q ss_pred eeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+........... ........+.|.|.....+| +|.|+|.|.|......
T Consensus 167 -l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 167 -VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp -ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred -CCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 544322211110 11122234668899888888 9999999999876544
No 358
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.76 E-value=7.8e-18 Score=141.73 Aligned_cols=183 Identities=17% Similarity=0.312 Sum_probs=113.8
Q ss_pred CceEEEeCCccEEEEEEeeee--CCCeEEEEEcCee--eC-----C-C-----------CceEEe------eeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH--PTPRISWRRENNA--IL-----P-T-----------GGSIYR------GSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~--~~-----~-~-----------~~~~~~------~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+. +.+.+.|++.... .. . . .+.... ...|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 345678899999999999765 4578999974311 00 0 0 011111 247999999
Q ss_pred CCCCCeEEEEEEecC--------CCCceeeeEEEEEEe---------------cceEeeCCCcccccCCCcEEEEEEEEe
Q psy8823 195 TKEDRGTYYCVAENG--------VGKGTRRNIAVEVEF---------------APVITVPKPRLGQALQYDMDLECHVEA 251 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g 251 (386)
+.+|+|.|+|.+.+. ..........|.|.. ++.+...+. ..+.+|++++|.|.+.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~ 165 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS 165 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence 999999999999886 111123344566655 333444444 77889999999999987
Q ss_pred -cC-CCeeEEEeCC--eeeee-e---------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc---e
Q psy8823 252 -YP-PPAIVWIKED--TQQVL-T---------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT---S 314 (386)
Q Consensus 252 -~p-~~~~~W~~~~--~~~~~-~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~ 314 (386)
.+ .+.+.|++.. ..... . ...++.... ......|.|.+++.+|+|.|+|.+.|..+. .
T Consensus 166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~ 240 (280)
T 3fku_X 166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR-----SGNTASLTITGLQPEDEADYYCSTWDSSLSAVVF 240 (280)
T ss_dssp CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCCHHHCEEEEEEEecCCCCceEE
Confidence 44 3689998732 22111 0 011222211 113457999999999999999999998632 2
Q ss_pred eeEEEEEEEecCCCCC
Q psy8823 315 EKTVELFESIIPVCPP 330 (386)
Q Consensus 315 ~~~~~l~v~~~p~~~~ 330 (386)
.....|.|...|..+|
T Consensus 241 g~~t~l~V~~~~~~~P 256 (280)
T 3fku_X 241 GGGTKLTVLGQPKAAP 256 (280)
T ss_dssp BCCCEEEEC-------
T ss_pred CCCEEEEECCCCCCCC
Confidence 3345666765554444
No 359
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=138.32 Aligned_cols=172 Identities=17% Similarity=0.289 Sum_probs=113.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----C------------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----P------------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~------------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. . ..+... ....|.|.+++
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 93 (261)
T 2xqy_G 14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT 93 (261)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence 456788999999999998765 5789999873 2110 0 011111 13579999999
Q ss_pred CCCCeEEEEEEecCCCCc--eeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeee
Q psy8823 196 KEDRGTYYCVAENGVGKG--TRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQV 267 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~ 267 (386)
.+|+|.|.|.+.+..+.. ......|.|.. +|.+....+...+..|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~ 173 (261)
T 2xqy_G 94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 173 (261)
T ss_dssp GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT
T ss_pred cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCc
Confidence 999999999999864311 12335677754 3555443333346679999999999885 776 999999986521
Q ss_pred eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
....... . ........+.|.|.++..+| |.|+|.|.|..........
T Consensus 174 ~~~~~~~--~--~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~ 220 (261)
T 2xqy_G 174 VHTFPAV--L--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKK 220 (261)
T ss_dssp EEECCCE--E--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred eEecCce--e--cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEE
Confidence 1111111 0 01122245789999988888 9999999998766544433
No 360
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.76 E-value=4.9e-18 Score=138.97 Aligned_cols=180 Identities=18% Similarity=0.275 Sum_probs=111.0
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcE--EEEecCCcccccccc-cc-CCc--ee---EEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPV--IWMKVDRNKVTEPLP-IS-TGS--SL---IIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v--~W~~~~~~~~~~~~~-~~-~~~--~~---~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+....+.+|++|+|.|.+.+.+ ...+ .||+.........+. .. .+. .. ....+|+.+..+...++++|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 4456689999999999997532 2345 999965432211111 11 111 00 011356766666666788999
Q ss_pred EcccCCCCCeEEEEEeEEccc-------ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCC--Ce
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN-------NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PR 166 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~ 166 (386)
|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+....+ ...+..|+.++|.|.+.+.++ ..
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~ 165 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVT 165 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCE
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecc-cccccCCCcEEEEEEEeeEeCCCeE
Confidence 999999999999999985421 112334456665 2344432222 223557999999999987544 35
Q ss_pred EEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 167 ISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 167 v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|++++..+. ..+......+.|.|.+....| |.|+|.+.|..+.
T Consensus 166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~ 218 (232)
T 3qhz_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 218 (232)
T ss_dssp EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence 88999885321 112223334678999998888 9999999997654
No 361
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.76 E-value=2.4e-17 Score=133.14 Aligned_cols=169 Identities=20% Similarity=0.344 Sum_probs=108.0
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee---C-------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI---L-------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~---~-------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. ... . ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 45688999999999998764 4689999863 211 0 01111111 248999999999
Q ss_pred CCeEEEEEEecCCCC--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeee
Q psy8823 198 DRGTYYCVAENGVGK--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLT 269 (386)
Q Consensus 198 d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~ 269 (386)
|+|.|.|.+.+..+. .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.| .+.|++++......
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~ 168 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH 168 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence 999999999986421 122335666653 4555443333445789999999999986 877 99999988652111
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..... . ........+.|. ....+| |.|+|.|.|..|.......
T Consensus 169 ~~~~~-~---~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~ 211 (215)
T 1c5d_H 169 TFPAV-L---QSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKK 211 (215)
T ss_dssp BCCCE-E---ETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred ecCcc-c---CCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEe
Confidence 11100 0 001111223344 444456 9999999999988765544
No 362
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.76 E-value=2.2e-17 Score=134.84 Aligned_cols=178 Identities=17% Similarity=0.298 Sum_probs=114.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCc-eeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGS-SLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.|||.........+.. .... ... ...+|+....+...++++|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 445678999999999999752 345699999654332111111 1111 101 123577776666678889999999
Q ss_pred CCCCCeEEEEEeEEcc-------cceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEE
Q psy8823 104 QETDAGYYRCQVIIGI-------NNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWR 170 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~-------~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~ 170 (386)
+.+|+|.|.|.+.+.. .........|.|.. +|.+....+. ..+.+|+.++|.|.+.+.+ ...+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCC-CCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCC-ccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 9999999999997642 11122345666642 3333321111 1245799999999998754 346999
Q ss_pred EcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+.. .+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 214 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC
Confidence 5544321 11222334579999999999 9999999997654
No 363
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.75 E-value=1e-17 Score=118.49 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=79.6
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQ--LAASERLSFPAD-----GAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEECCEE-----TTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccc--ccceeeEEEeec-----CceEEEEEecCChhhCEEE
Confidence 367777777788899999999999999999999999999988 655555543321 1356799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
+|.|.|..|..+.++.|.|..+|
T Consensus 85 ~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 85 VCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC--
T ss_pred EEEEEECCCEEEEEEEEEEEcCC
Confidence 99999999999999999997654
No 364
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.75 E-value=5.5e-18 Score=137.01 Aligned_cols=169 Identities=21% Similarity=0.336 Sum_probs=104.8
Q ss_pred ceEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--ee--C----C----------CCceEE----eeeEEEECCCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGH--PTPRISWRRENN--AI--L----P----------TGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~--~----~----------~~~~~~----~~~~l~i~~~~~~d 198 (386)
..+.+.+|++++|.|.+.+. +.+.+.|++... .. . . ..+... ....|.|.+++.+|
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 86 (215)
T 3nl4_H 7 GGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTTED 86 (215)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCGGG
T ss_pred CCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCccc
Confidence 34568899999999999763 356899998431 10 0 0 011111 13469999999999
Q ss_pred CeEEEEEEecCCCC---ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeee
Q psy8823 199 RGTYYCVAENGVGK---GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLT 269 (386)
Q Consensus 199 ~g~y~C~~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~ 269 (386)
+|.|.|.+.+..+. .......+.|. .+|.+....+...+..|+.++|.|.+.+.+++ .+.|++++......
T Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~ 166 (215)
T 3nl4_H 87 TATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVR 166 (215)
T ss_dssp CEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred CEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeE
Confidence 99999999987542 12334556665 45666544444566789999999999986543 67899988642121
Q ss_pred cCceeEEeeeeecCceeeeEEEE---eecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 270 NNQHYSISHFATADEFTDTTIRV---ITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i---~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
..... .. .++.+.+ ..+...| |.|+|.|.|..|.......|.
T Consensus 167 ~~~~~-----~~----~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~ 211 (215)
T 3nl4_H 167 TFPSV-----RQ----SSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVA 211 (215)
T ss_dssp ECCCE-----EC----TTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECC
T ss_pred ecCce-----EC----CCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecC
Confidence 11111 00 1112222 4455667 999999999998877666553
No 365
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=132.70 Aligned_cols=175 Identities=15% Similarity=0.199 Sum_probs=123.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+..... ... ....|.|.++..+|.|.|+|.+.|..+. ..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~ 103 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ES 103 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCE-EE
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCc-eE
Confidence 3457788999999999999999999999999988765532 121 2568999999999999999999999987 46
Q ss_pred eeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe----cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA----YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 216 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g----~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
..+.+.|..+|....... ....+..+.|.|.... .|.. .+.|.+++...... .............
T Consensus 104 ~~~~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-------~~~~~~~~~~~~~ 174 (215)
T 3mtr_A 104 LEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-------KWYDAKEASMEGI 174 (215)
T ss_dssp EEEEEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-------EEEEHHHHHHHTE
T ss_pred EEEEEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-------ccccccccccccc
Confidence 677888876654321111 1234567888887422 2222 37788776541110 0000000112367
Q ss_pred EEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
|.|.++...+.|.|+|.|.|..|....+..+.+...|
T Consensus 175 l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 175 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp EEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred EEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 9999999999999999999999999888777776555
No 366
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.75 E-value=1.1e-16 Score=153.17 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=166.0
Q ss_pred cCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEE
Q psy8823 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII 117 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 117 (386)
.+..+.|.|.+.+.|.+.+.|.+++...... ...++.+.. ....+..|.+..+...|.|.|.|.
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~------------~~~~~~i~~-~~~~~~~l~~~~va~~~~G~~~~~--- 153 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTW------------NRAELAIST-FWPNFYQVIFEVITSGHQGYLAID--- 153 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSC------------EEEEEEECC-CTTSCEEEEEEEEECSSCCEEEEC---
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCce------------eEEEEEEee-cCCCceEEEEEEEecCCceEEEEe---
Confidence 3458999999999999999999988654110 001111100 001222344444445555555542
Q ss_pred cccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEE-EE--EcCeeeCCCCceE----Eeee
Q psy8823 118 GINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS-WR--RENNAILPTGGSI----YRGS 187 (386)
Q Consensus 118 ~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~----~~~~ 187 (386)
.+.+.+ ..+|.+.. +....+.+|++++|.|.+.|.|.+.+. |+ +++..+....... ....
T Consensus 154 --------~v~~~~~~~~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~ 223 (731)
T 2v5y_A 154 --------EVKVLGHPCTRTPHFLR--IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 223 (731)
T ss_dssp --------CBEEESSCCSSSCEECC--CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEE
T ss_pred --------eEEeeeccccccccccc--ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceE
Confidence 122222 24555542 346789999999999999999999887 77 5665543221111 1246
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec---CCC---eeEEEe
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY---PPP---AIVWIK 261 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~---~~~W~~ 261 (386)
.|.|.++...|.|.|+|.+.|..+...+....|.|..+|.....+... ......+.|.|..... .+. .+.|..
T Consensus 224 ~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~ 302 (731)
T 2v5y_A 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCT 302 (731)
T ss_dssp EEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEE
T ss_pred EEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEE
Confidence 899999999999999999999988755666778888777644333222 2234678888875321 121 455654
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE--cCCCceeeEEEEEEEecCCCCCCCCC-cee-
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA--NKLGTSEKTVELFESIIPVCPPQTQP-SEL- 337 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~p~~~~~~~~-~~~- 337 (386)
.+.. ..... ......+.|.++.+.+...|+|.|. |..|....+..+.+...+..|+..+. ..+
T Consensus 303 ~~~~-------~~~~~------~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~ 369 (731)
T 2v5y_A 303 ASGS-------WNDRQ------PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVV 369 (731)
T ss_dssp SSSS-------CEEEE------ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEE
T ss_pred CCCC-------ceEEe------ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEE
Confidence 4321 00110 0124678899999999899999999 99998876655555555544433222 112
Q ss_pred -ecCcceeeeEEec
Q psy8823 338 -LPLRNVNMAVIFA 350 (386)
Q Consensus 338 -~~~~~~~~~c~~~ 350 (386)
.....+.+.+..+
T Consensus 370 ~~~~~sv~l~W~~p 383 (731)
T 2v5y_A 370 EVKSRQITIRWEPF 383 (731)
T ss_dssp EECSSCEEEEEECC
T ss_pred eccCCeEEEEEECC
Confidence 2334566666553
No 367
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.75 E-value=1.7e-17 Score=136.83 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=113.9
Q ss_pred eeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+....+.+|++|+|.|.+.+. +...+.||+.........+. .. .+..... ..+|+....+...++++|.|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 34567779999999999999752 34569999965433211111 11 1111111 135666665555678899999
Q ss_pred ccCCCCCeEEEEEeEEcc---------------------cceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGI---------------------NNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLE 156 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~ 156 (386)
+++.+|+|.|.|.+.+.. .........|.|. .+|.+....+. ..+..|+.++|.
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~L~ 162 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS-SKSTSGGTAALG 162 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------CEEEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC-ccccCCCcEEEE
Confidence 999999999999997631 1112234566665 23333322222 234568999999
Q ss_pred EEeeee-C-CCeEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 157 CFAGGH-P-TPRISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 157 C~~~~~-~-~~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.+.+. | ...+.|++++..+. ..+......+.|.|.+...+| |.|+|.+.|....
T Consensus 163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 227 (248)
T 3u2s_H 163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 227 (248)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT
T ss_pred EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC
Confidence 999774 4 35699999885321 112233345678899888888 9999999997654
No 368
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.75 E-value=1.2e-17 Score=137.22 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=113.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccccccc-cc------CCceeEE---eccceeeecCCCcceE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLP-IS------TGSSLII---RDSRFAIRYDTASSTY 96 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~------~~~~~~~---~~~~~~~~~~~~~~~~ 96 (386)
+....+.+|++|+|.|.+.+.+ ...+.||+.........+. .. .+..... ..+|+.+..+...+++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 4566789999999999998654 3479999965433211111 11 1111111 1356666655556788
Q ss_pred EEEEcccCCCCCeEEEEEeEEccc------------ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEee
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGIN------------NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAG 160 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~ 160 (386)
+|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+....+. ..+..|+.++|.|.+.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-CCC--TTEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCC-hhhccCCcEEEEEEEe
Confidence 999999999999999999875421 111233456664 23333322121 1244699999999998
Q ss_pred ee-CCC-eEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 161 GH-PTP-RISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 161 ~~-~~~-~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+. |.+ .+.|++++..+. ..+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 226 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 226 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC
Confidence 74 433 488999886321 112223334678899988888 9999999997654
No 369
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.75 E-value=1.3e-17 Score=138.67 Aligned_cols=178 Identities=21% Similarity=0.276 Sum_probs=109.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeE---EeccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLI---IRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+....+.+|++|+|.|.+.+.. ...+.|||.........+. ...+.... ...+|+....+...++++|.|.+++
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (263)
T 3iu4_H 7 SGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQ 86 (263)
T ss_dssp ECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCC
Confidence 3456789999999999997533 4569999865432211111 11111111 1235777666666678899999999
Q ss_pred CCCCeEEEEEeEEccc-------ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEE
Q psy8823 105 ETDAGYYRCQVIIGIN-------NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRR 171 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~ 171 (386)
.+|+|.|.|.+.+... ........|.|. .+|.+....+.. .+.+|+.++|.|.+.+.++ +.++|
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~~~L~C~~~~~~P~~~~v~W-- 163 (263)
T 3iu4_H 87 TDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSS-KGSTSGTAALGCLVKDYFPEPVTVSW-- 163 (263)
T ss_dssp GGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCC-CC----EEEEEEEEEEEBSSCCEEEE--
T ss_pred HHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCcc-ccccCCcEEEEEEEEeEeCCceEEEE--
Confidence 9999999999976421 111233466664 234333211111 2347899999999977543 57999
Q ss_pred cCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+.. .+......+.|.|.....+| |.|+|.+.|....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 213 (263)
T 3iu4_H 164 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 213 (263)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGT
T ss_pred CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCC
Confidence 4433321 12222334578999988888 9999999997654
No 370
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.75 E-value=2.6e-18 Score=138.02 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=102.4
Q ss_pred Ceeeeeccceee--ecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQEQIK--DIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~~~v--~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.++...+ .+|++++|.|.+.+.+ ...|.|+|++..+.... ........++.+.. ...|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~----~~~~~~~~~g~~~~-------~~~l 70 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRV-------VSVL 70 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE----ECCCEECTTSCEEE-------EEEE
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc----cCCceeccCCcEEE-------EEEE
Confidence 556666554434 7999999999998754 34899999886542110 00000001111111 1134
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
.|.....+|+|.|+|.+.+..+.. .+..+.+ .+..+|.+.........+ .|..++|.|.+.|. |+ +.++|+++|
T Consensus 71 ~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 71 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp ECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 444444556999999999765432 2223322 234455543322221112 45569999999886 43 389999999
Q ss_pred eeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 87653211 1112234566666567899999999997653
No 371
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.75 E-value=5.4e-17 Score=135.82 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=105.8
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--ee---eC---------CCCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NA---IL---------PTGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~---~~---------~~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. .. +. ...+... ....|.|.+++.+|
T Consensus 22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 101 (268)
T 1x9q_A 22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED 101 (268)
T ss_dssp CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence 3455678999999999998776 4789999864 11 10 0111111 13479999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecce-----------------------EeeCCCcccccCCCcEEEEEEEEecCC-
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPV-----------------------ITVPKPRLGQALQYDMDLECHVEAYPP- 254 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~- 254 (386)
+|.|+|.+.+..+........|.|...+. ....+....+.+|++++|.|.+.+.++
T Consensus 102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 181 (268)
T 1x9q_A 102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG 181 (268)
T ss_dssp CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence 99999999987543222334555554321 111233456788999999999998764
Q ss_pred -CeeEEEeCC--eee-eee----------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 255 -PAIVWIKED--TQQ-VLT----------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 255 -~~~~W~~~~--~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.+.|+++. ... .+. ...++..... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 182 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 182 HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD---DSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEe---CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 689999853 221 110 0112221110 0112467999999999999999999985
No 372
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.75 E-value=2.3e-18 Score=141.12 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=109.1
Q ss_pred cCCeeeeecccee--eecCCcEEEEEEEeeC---CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQEQI--KDIGGTVELKCSVQYA---QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~~~~--v~~G~~v~L~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+|.+.+.+.... +.+|++++|.|.+.+. |.+ .|.|++++..+.... ........++.+ ....
T Consensus 14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~-------~~~s 82 (239)
T 1i1c_A 14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQ----THAPEKQSNSTL-------RSVS 82 (239)
T ss_dssp ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCE----ECCCEECTTSCE-------EEEE
T ss_pred cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcc----cccceEcCCCcE-------EEEE
Confidence 4566666555554 7899999999999875 554 799999885432110 000000011122 2345
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~ 171 (386)
+|.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ...|+.++|.|.+.|. |+ ..++|++
T Consensus 83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k 161 (239)
T 1i1c_A 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKM 161 (239)
T ss_dssp EEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence 89999999999999999999765432 2223322 3344555443222211 1247889999999885 44 4799999
Q ss_pred cCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 9987643211 1112234556555556799999999997654
No 373
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.74 E-value=3.4e-17 Score=152.69 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=119.7
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCC-------------CceEEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPT-------------GGSIYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
.....+.+|++++|.|.+ .+.|.+.++|++++..+... ........+|.|.+++.+|+|.|+|.+.
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence 355678899999999999 78888999999987632111 1112234579999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceE-eeCCCcccccCCCc-EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeee-----
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVI-TVPKPRLGQALQYD-MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHF----- 279 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~-~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~----- 279 (386)
|..+......+.|.|..+|.. .+......+..++. +.|.|.+.+ +|.|.++|++++..+... .....+...
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~~ 531 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN-EKGVSVKEQTRRHP 531 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT-STTEEEEEEEEECT
T ss_pred cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC-CCeEEEEeeeEEcC
Confidence 988875467788888775431 12222222444544 567999988 699999999999883221 122222111
Q ss_pred eecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCce
Q psy8823 280 ATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~ 314 (386)
..+.+...++|.|.+++ .++.|.|+|.|.|..+..
T Consensus 532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred CCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 22233456789999998 566889999999997544
No 374
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.74 E-value=1e-17 Score=138.67 Aligned_cols=172 Identities=19% Similarity=0.298 Sum_probs=98.9
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--eeC------C-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AIL------P-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~~------~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++... ... . ..+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 56899998641 110 0 011111 134799999999
Q ss_pred CCCeEEEEEEecCCC----------C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeE
Q psy8823 197 EDRGTYYCVAENGVG----------K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIV 258 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~ 258 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~ 168 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 168 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEE
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence 999999999998654 1 112334677754 4555443333345679999999999986 777 999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|++++.......... . ......+...+.|.|.++..+| |.|+|.|.|..........
T Consensus 169 W~k~g~~~~~~~~~~--~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~ 225 (257)
T 3bn9_D 169 WNSGALTSGVHTFPA--V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 225 (257)
T ss_dssp ETTTTCCSSCEECCC--E-ECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEE
T ss_pred EeeCCCcCCcEecCC--e-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEE
Confidence 999987521110000 0 0111122245678888888888 9999999997665544433
No 375
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=138.47 Aligned_cols=177 Identities=18% Similarity=0.313 Sum_probs=110.8
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCc-eeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGS-SLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.||+.........+.. .... ... ...+|+....+...++++|.|.++
T Consensus 30 ~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (267)
T 3u1s_H 30 SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGL 109 (267)
T ss_dssp CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSC
T ss_pred eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence 445678999999999998642 345699999654332221111 1111 111 113577776666667889999999
Q ss_pred CCCCCeEEEEEeEE-------cc------------c-c----eeeeEEEEEEe----cCCeeec-CCCceEEEeCCccEE
Q psy8823 104 QETDAGYYRCQVII-------GI------------N-N----KISAEVDLQVR----RPPVISD-NSTRSLVVSEGQPVQ 154 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~-~~~~~~~~~~g~~v~ 154 (386)
+.+|+|.|.|.+.+ .. . . .......|.|. .+|.+.. .+... ..+|+.++
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~--~~~g~~~~ 187 (267)
T 3u1s_H 110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSK--STSGGTAA 187 (267)
T ss_dssp CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGG--GEETTEEE
T ss_pred ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcc--cCCCCcEE
Confidence 99999999999861 11 0 0 11123456664 2333331 22211 24689999
Q ss_pred EEEEeeee-C-CCeEEEEEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 155 LECFAGGH-P-TPRISWRRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 155 l~C~~~~~-~-~~~v~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.|.+.+. | .+.++| ++..+.. .+......+.|.|.+...+| +.|+|.+.|....
T Consensus 188 l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 188 LGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp EEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence 99999764 4 457999 5544321 11222334578999988888 9999999987654
No 376
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.2e-17 Score=130.81 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=119.2
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.| ..+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ...++.+.. .....+|.
T Consensus 15 ~~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~------------~~~~~~~~~--~~~~~~L~ 79 (215)
T 3mtr_A 15 SHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS------------NYSNIKIYN--TPSASYLE 79 (215)
T ss_dssp CCCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCS------------SSCSEEEEE--ETTEEEEE
T ss_pred ceecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCC------------CCccEEEec--CCCeeEEE
Confidence 34456777 4666777999999999999999999999999988654211 001222221 12356899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee----eCCC--eEEEEEcC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----HPTP--RISWRREN 173 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~----~~~~--~v~W~~~~ 173 (386)
|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|..+.. ......+..+.|.|.... .|.. .+.|.+++
T Consensus 80 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~---~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~ 155 (215)
T 3mtr_A 80 VTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSPSI---DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVG 155 (215)
T ss_dssp ECCCSGGGCEEEEEEEECSSCEE-EEEEEEEECCCCCCCEE---EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETT
T ss_pred EecCChhhCeEEEEEEEECCCce-EEEEEEEECCCCCCCcc---eEEEEecceEEEEEecCCccCCCceEEEEEEEEECC
Confidence 99999999999999999876544 66788888776644321 111234677899997422 2222 47888876
Q ss_pred eeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 174 NAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 174 ~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
........... ....|.|.++...+.|.|+|.|.|..|..
T Consensus 156 ~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s 199 (215)
T 3mtr_A 156 EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199 (215)
T ss_dssp CCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred CCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCccc
Confidence 54211110000 12679999999999999999999988863
No 377
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.73 E-value=2.9e-17 Score=114.64 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=77.2
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......++.+... ....+|.|.+++.+|+|.|+
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT-----DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC-----SSEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecc-----cceEEEEEcCCCccCCEEEE
Confidence 5667667777888999999999999999999999999998833333334433221 13568999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEe
Q psy8823 305 CRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|..|..+.++.|.|..
T Consensus 80 C~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 80 LSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCCEEEEEEEEEEEE
Confidence 99999999999999998863
No 378
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.72 E-value=8.8e-17 Score=141.06 Aligned_cols=165 Identities=12% Similarity=0.159 Sum_probs=115.2
Q ss_pred EeCCccEEEEEEeeee---CC-CeEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PT-PRISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+..|+.++|.|.+.+. |. ..++|++++..+... .........|.|.+++.+|+|.|+|.+.+.....
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999877 32 369999998664321 1122234579999999999999999999876532
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+.+.+.......|+.++|.|.+.|+++ +.|+|++++.. +............+..+...+
T Consensus 260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~--~~~~~~~~~~~~~dgty~~~s 337 (376)
T 2aty_A 260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQP--AENYKNTQPIMNTNESYFVYS 337 (376)
T ss_pred ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEE--CCCeEeCCceECCCCCEEEEE
Confidence 2223322 4566788777666655566899999999998643 48999999987 322222111112222233456
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.|.|.....+|.|.|+|.|.|....
T Consensus 338 ~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 338 KLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 7888888888999999999998754
No 379
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.72 E-value=2.6e-17 Score=134.40 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=110.2
Q ss_pred cCCeeee-eccceeeecCCcEEEEEEEeeC-CC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISY-ISQEQIKDIGGTVELKCSVQYA-QD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~-~~~~~~v~~G~~v~L~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
.+|.+.+ .|....+.+|+.++|.|.+.+. |. ..|.|++++..+.. ..........++.+. ....|
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~----~~~~~~~~~~~g~~~-------~~s~L 79 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLR----PDPMVLQEHFNGTYS-------ASSAV 79 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCC----CCCCEEEECTTSCEE-------EEEEE
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccc----cccccceECCCCcEE-------EEEEE
Confidence 4566654 4555557899999999999874 53 48999988765410 000000011122222 23479
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe------cCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWR 170 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~ 170 (386)
.|.+++.+|+|.|+|.+.+.... ..+.+.|. .+|.+....+....+ .+..++|.|.+.|.++ +.++|+
T Consensus 80 ~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~ 155 (231)
T 2w59_A 80 PVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWL 155 (231)
T ss_dssp ECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EecchhccCCCEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEE
Confidence 99999999999999999975432 22333332 344333221111112 2457999999988643 689999
Q ss_pred EcCeeeCCCC--------------------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTG--------------------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|..+.... ......+.|.|.....+|.|.|+|.|.|....
T Consensus 156 k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 156 RDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred ECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 9998774432 11122356888888888899999999997654
No 380
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.72 E-value=2.6e-16 Score=129.20 Aligned_cols=171 Identities=15% Similarity=0.243 Sum_probs=109.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee--C-------------CCCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI--L-------------PTGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~--~-------------~~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.. +.+.+.|++++. .. . ...+... ....|.|.+++.+|+
T Consensus 6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~ 84 (238)
T 1bec_A 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT 84 (238)
T ss_dssp CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence 45667899999999999853 577899998641 11 0 0111111 235799999999999
Q ss_pred eEEEEEEecCCC----CceeeeEEEEEEe------cceEeeC-CCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeee
Q psy8823 200 GTYYCVAENGVG----KGTRRNIAVEVEF------APVITVP-KPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQ 266 (386)
Q Consensus 200 g~y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 266 (386)
|.|.|.+.+..+ ........|.|.. +|.+... +....+..|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~- 163 (238)
T 1bec_A 85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE- 163 (238)
T ss_dssp EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEE-
T ss_pred EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEE-
Confidence 999999998642 1112334566654 4555443 334456689999999999986 655 8999999987
Q ss_pred eeecCceeE--EeeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYS--ISHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+....... ............+.|.|......| +|.|+|.|.|......
T Consensus 164 -~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 214 (238)
T 1bec_A 164 -VHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 214 (238)
T ss_dssp -ECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTT
T ss_pred -CCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCC
Confidence 44332211 000111111233456666655544 6889999999854433
No 381
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.72 E-value=1.6e-16 Score=127.26 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=110.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecC-CCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~ 105 (386)
+...+....+.+|++|+|.|.+.+.. ..+.|+|.........+.... ......+|+....+ ...++++|.|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~--~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLA--SGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEES--SEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEc--cCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 44456667799999999999998544 479999975432111111111 11224567777655 446778999999999
Q ss_pred CCCeEEEEEeEEccc--------c--eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 106 TDAGYYRCQVIIGIN--------N--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~--------~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
+|+|.|.|.+.+..+ . .......|.|........ ...+.+..+ .++|.|.+.+.++ +.++|+++
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~--~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~- 156 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA--KPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS- 156 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC--CCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC--CCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-
Confidence 999999999986531 0 112345677764321111 122223222 3799999987643 68999999
Q ss_pred eeeCCCCceE--EeeeEEEECCCCC-CCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGGSI--YRGSILKIPQITK-EDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~~~--~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~ 212 (386)
..+....... ..++.+.+..... +|.|.|+|.+.|..+.
T Consensus 157 ~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 157 KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence 6554221111 1223444434443 6789999999987643
No 382
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=134.37 Aligned_cols=172 Identities=13% Similarity=0.197 Sum_probs=112.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee-------------CC----CCceEE-----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI-------------LP----TGGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~-------------~~----~~~~~~-----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|++++. .. .. ..+... ....|.|.+++.+
T Consensus 31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 110 (279)
T 2wbj_D 31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 110 (279)
T ss_dssp CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence 445678999999999999877778899998641 10 00 111111 1347999999999
Q ss_pred CCeEEEEEEecCCC----C-ceeeeEEEEEEe------cceEeeC-CCcccccCCCcEEEEEEEEec-CC-CeeEEEeCC
Q psy8823 198 DRGTYYCVAENGVG----K-GTRRNIAVEVEF------APVITVP-KPRLGQALQYDMDLECHVEAY-PP-PAIVWIKED 263 (386)
Q Consensus 198 d~g~y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~ 263 (386)
|+|.|+|.+.+..+ . .......|.|.. +|.+... +....+..|+.++|.|.+.|. |+ +.+.|++++
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g 190 (279)
T 2wbj_D 111 DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 190 (279)
T ss_dssp GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETT
T ss_pred CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 99999999998421 1 112234566654 4555443 223344578999999999987 43 589999999
Q ss_pred eeeeeecCceeEEee------eeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCcee
Q psy8823 264 TQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSE 315 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~ 315 (386)
.. +.......... .........+.|.|.+...+ |+|.|+|.|.|......
T Consensus 191 ~~--l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 191 KE--VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EE--CCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EE--CCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 87 43332211000 01112223456888887765 47889999999876554
No 383
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.71 E-value=1.5e-16 Score=148.25 Aligned_cols=174 Identities=18% Similarity=0.283 Sum_probs=115.8
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|++++|.|.+ .+.+.+.+.|++++............+. .....+..... +++|.|.+++.+|+|.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~--~~~~~r~~~~~-----~~~L~i~~v~~~D~G~ 446 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGG--GPWDSVARVLP-----NGSLFLPAVGIQDEGI 446 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCS--SGGGGTSEECT-----TSCEEESSCCGGGCEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCC--CCcCCcEEEcC-----CceEEEeccccccCeE
Confidence 34568899999999998 6677888999998753211100000000 00122333322 2279999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCcc-EEEEEEeee-eCCCeEEEEEcCeeeCCCCce------
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP-VQLECFAGG-HPTPRISWRRENNAILPTGGS------ 182 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~-v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~------ 182 (386)
|+|.+.+..+......+.|.|..+|..+........+.+|+. +.|.|.+.+ .|.+.++|++++..+......
T Consensus 447 Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~ 526 (581)
T 3o3u_N 447 FRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ 526 (581)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred EEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence 999999876665577888999875533221112223555555 467999987 589999999999887543221
Q ss_pred ---------EEeeeEEEECCCC-CCCCeEEEEEEecCCCC
Q psy8823 183 ---------IYRGSILKIPQIT-KEDRGTYYCVAENGVGK 212 (386)
Q Consensus 183 ---------~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 212 (386)
....++|.|.+++ .++.|.|+|.+.|....
T Consensus 527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 1123579999998 45578999999997643
No 384
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.71 E-value=8.2e-17 Score=132.17 Aligned_cols=175 Identities=18% Similarity=0.268 Sum_probs=111.2
Q ss_pred eEEEeCCccEEEEEEeeeeC----CCeEEEEEcCee-----e---C------C---------CCceE-E------eeeEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHP----TPRISWRRENNA-----I---L------P---------TGGSI-Y------RGSIL 189 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~-----~---~------~---------~~~~~-~------~~~~l 189 (386)
.+.+.+|++++|.|.+.+.+ ...+.|++.... + . . ...+. . ....|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 88 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL 88 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence 45688999999999997655 347999984311 1 0 0 00111 1 12359
Q ss_pred EECCCCCCCCeEEEEEEecCCC-----------C-ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-c
Q psy8823 190 KIPQITKEDRGTYYCVAENGVG-----------K-GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-Y 252 (386)
Q Consensus 190 ~i~~~~~~d~g~y~C~~~~~~~-----------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~ 252 (386)
.|.+++.+|+|.|.|.+.+..+ . .......+.|. .+|.+....+...+..|+.++|.|.+.+ .
T Consensus 89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~ 168 (239)
T 3tv3_H 89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 168 (239)
T ss_dssp EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEB
T ss_pred EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEe
Confidence 9999999999999999986421 0 01122345553 3455554444445567999999999988 4
Q ss_pred CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 253 PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 253 p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|++ .+.|++++........... ......+...+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 169 p~~~~v~W~~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 169 PEPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp SSCCEEEEGGGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CCCeEEEEEECCccCceEecCce---ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 544 5889998864211111110 1112223345679999998888 9999999999887776666544
No 385
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=3.3e-16 Score=127.74 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=109.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---eC----C--------CCceE-E------eeeEEEECCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---IL----P--------TGGSI-Y------RGSILKIPQI 194 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~~----~--------~~~~~-~------~~~~l~i~~~ 194 (386)
.+..+.+.+|++++|.|.+.+. +...+.|++... . +. . ...+. . ....|.|.++
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (230)
T 1ypz_F 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (230)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence 3556788999999999999764 456899998531 1 10 0 11111 1 1237999999
Q ss_pred CCCCCeEEEEEEecC---CCCceeeeEEEEEEe---------cceEee-CCCcccccCCCcEEEEEEEEec-CC-CeeEE
Q psy8823 195 TKEDRGTYYCVAENG---VGKGTRRNIAVEVEF---------APVITV-PKPRLGQALQYDMDLECHVEAY-PP-PAIVW 259 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~---~~~~~~~~~~l~v~~---------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W 259 (386)
+.+|+|.|.|.+.+. ..........|.|.. +|...+ .+....+..|+.++|.|.+.|. |. +.+.|
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W 166 (230)
T 1ypz_F 87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW 166 (230)
T ss_dssp CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence 999999999999874 111122334666651 233222 1222334568899999999986 75 49999
Q ss_pred Ee-CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 260 IK-EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 260 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
++ ++.. +......... .....+...+.|.|..... + |.|+|.|.|..+....+..
T Consensus 167 ~~~~g~~--l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~~ 222 (230)
T 1ypz_F 167 KEKDGNT--ILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQA 222 (230)
T ss_dssp ECTTSSC--BCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCEE
T ss_pred EccCCeE--ccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeEe
Confidence 99 7655 2221111111 1112222456788988876 4 9999999999876544443
No 386
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.70 E-value=2.3e-16 Score=128.35 Aligned_cols=178 Identities=20% Similarity=0.292 Sum_probs=110.9
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccC-CceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IST-GSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+. +...+.||+.........+. ... +..... ..+|+....+...++++|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL 86 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence 446678999999999999753 34569999965432211111 111 111111 13566666555567889999999
Q ss_pred CCCCCeEEEEEeEEccc--------ceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-C-CCeEEE
Q psy8823 104 QETDAGYYRCQVIIGIN--------NKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-P-TPRISW 169 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W 169 (386)
+.+|+|.|.|.+.+... ........|.|.. +|.+... .....+.+|+.++|.|.+.+. | .+.+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W 165 (226)
T 3mlr_H 87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW 165 (226)
T ss_dssp CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE-EEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe-cCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence 99999999999875421 1112234566642 2333211 111123478999999999775 3 357999
Q ss_pred EEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 170 RRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+.. .+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 215 (226)
T 3mlr_H 166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 215 (226)
T ss_dssp --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence 4433211 12222334579999998889 9999999997654
No 387
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.70 E-value=4.1e-18 Score=137.50 Aligned_cols=168 Identities=15% Similarity=0.227 Sum_probs=107.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCC---CeEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT---PRISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+....+.+|+.++|.|.+.+.++ +.+.| + +...... .+.......|.|.++..+|+|.|+|.+.|.
T Consensus 11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~ 88 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP 88 (214)
T ss_dssp CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence 34445678999999999988754 68999 4 3332211 111123456888888889999999999987
Q ss_pred CCCce-eeeEE-EEEEecceEeeCC-CcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeE--Eeee---
Q psy8823 210 VGKGT-RRNIA-VEVEFAPVITVPK-PRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYS--ISHF--- 279 (386)
Q Consensus 210 ~~~~~-~~~~~-l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~--~~~~--- 279 (386)
.+... ...+. +.+..+|.+...+ ....+..|+.++|.|.+.|. |+ +.+.|++++.. +....... ....
T Consensus 89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~ 166 (214)
T 1ow0_A 89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE--LPREKYLTWASRQEPSQ 166 (214)
T ss_dssp SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE--CCGGGSEECCCEECSCS
T ss_pred CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE--CCCCceeecCCcccccC
Confidence 65421 22222 1234577665433 33446788999999999985 44 38999999987 43332111 1111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+..+...+.|.+.....+|.|.|+|.|.|....
T Consensus 167 ~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 167 GTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp SSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 1122223456667666667789999999998754
No 388
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.70 E-value=3.1e-16 Score=112.82 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=84.5
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 78 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ--IQESEHMKVENS-----ENGSKLTILAARQEHCGCY 78 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSB--CCCSSSEEEEEC-----SSEEEEEETTCCTTTCEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEE--CcCCCCEEEEEc-----CCEEEEEECCCChhcCEEE
Confidence 356677677778889999999999999999999999999988 554445444321 1367899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCCCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCPPQTQ 333 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 333 (386)
+|.|.|..|..+..+.|.|...|.+|..++
T Consensus 79 ~C~a~N~~g~~~~~~~l~V~~~p~~P~~p~ 108 (114)
T 2cqv_A 79 TLLVENKLGSRQAQVNLTVVDKPDPPAGTP 108 (114)
T ss_dssp EEEEECSSCEEECCEEEEEECSCSCCCCCT
T ss_pred EEEEEECCCcEEEEEEEEEECCCCCCCCCc
Confidence 999999999999999999998887665443
No 389
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.69 E-value=3.9e-16 Score=129.41 Aligned_cols=171 Identities=16% Similarity=0.250 Sum_probs=109.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC--CC----------C-ceEEeee-E--EEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL--PT----------G-GSIYRGS-I--LKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~--~~----------~-~~~~~~~-~--l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+|... . +. .. + +...... . |.|.+++.+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG 87 (253)
T 3to4_D 8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR 87 (253)
T ss_dssp CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence 445678899999999998888888999998321 1 00 00 0 1111100 1 999999999999
Q ss_pred EEEEEEecCCC---C--ceeeeEEEEEE------ecceEeeC-CCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeee
Q psy8823 201 TYYCVAENGVG---K--GTRRNIAVEVE------FAPVITVP-KPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQ 266 (386)
Q Consensus 201 ~y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~ 266 (386)
.|+|.+.+..+ . .......+.|. .+|.+... +....+..|+.++|.|.+.| +|++ .+.|++++..
T Consensus 88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~- 166 (253)
T 3to4_D 88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE- 166 (253)
T ss_dssp EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-
T ss_pred EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE-
Confidence 99999986543 1 11223455554 34554432 22233445689999999998 6666 8999999987
Q ss_pred eeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCce
Q psy8823 267 VLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTS 314 (386)
Q Consensus 267 ~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~ 314 (386)
+........... ........+.|.|.....+| +|.|+|.|.|.....
T Consensus 167 -l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~ 220 (253)
T 3to4_D 167 -VHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (253)
T ss_dssp -ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred -CCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence 443322111000 11222334678888888887 789999999986443
No 390
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.69 E-value=9.3e-17 Score=131.36 Aligned_cols=174 Identities=19% Similarity=0.257 Sum_probs=107.2
Q ss_pred EEEeCCccEEEEEEeeeeC--CCeE--EEEEcCee----eC-----CC------------CceEE------eeeEEEECC
Q psy8823 145 LVVSEGQPVQLECFAGGHP--TPRI--SWRRENNA----IL-----PT------------GGSIY------RGSILKIPQ 193 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~--~~~v--~W~~~~~~----~~-----~~------------~~~~~------~~~~l~i~~ 193 (386)
+.+.+|++++|.|.+.+.+ ...+ .|++.... .. .. .+... ....|.|.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 89 (232)
T 3qhz_H 10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN 89 (232)
T ss_dssp SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence 4588999999999996532 2345 99984310 00 00 11111 123699999
Q ss_pred CCCCCCeEEEEEEecCCC-------CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEE
Q psy8823 194 ITKEDRGTYYCVAENGVG-------KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWI 260 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~ 260 (386)
++.+|+|.|.|.+.+..+ ........+.|. .+|.+....+...+..|+.++|.|.+.+.+++ .+.|+
T Consensus 90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~ 169 (232)
T 3qhz_H 90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 169 (232)
T ss_dssp CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence 999999999999987531 112233455554 34555533444455679999999999885543 68899
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+++........... ......+...+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 170 ~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 170 SGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp GGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ECCEecceeeccce---eCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 98864211111110 1111222345689999999889 9999999999988777766644
No 391
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.69 E-value=1e-15 Score=126.75 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC------------CCCceEE-----eeeEEEECCCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL------------PTGGSIY-----RGSILKIPQITKED 198 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~------------~~~~~~~-----~~~~l~i~~~~~~d 198 (386)
.+..+.+.+|++++|.|.+. .+.+.+.|+++.. . +. ...+... ....|.|.+++.+|
T Consensus 9 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D 87 (252)
T 1oga_E 9 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP 87 (252)
T ss_dssp SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred cCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence 34567899999999999985 3567899998631 1 10 0111111 13579999999999
Q ss_pred CeEEEEEEecCCC--CceeeeEEEEEE------ecceEeeC-CCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeee
Q psy8823 199 RGTYYCVAENGVG--KGTRRNIAVEVE------FAPVITVP-KPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQV 267 (386)
Q Consensus 199 ~g~y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~ 267 (386)
+|.|.|.+.+... ........+.|. .+|.+... +....+..|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~-- 165 (252)
T 1oga_E 88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-- 165 (252)
T ss_dssp CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--
T ss_pred CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEE--
Confidence 9999999998621 111123345554 35555543 233344578999999999985 654 8999999987
Q ss_pred eecCceeEEee------eeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCcee
Q psy8823 268 LTNNQHYSISH------FATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSE 315 (386)
Q Consensus 268 ~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~ 315 (386)
+.......... .........+.|.|...... |+|.|+|.|.|......
T Consensus 166 l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 166 VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp ECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 44332211000 01112223556888877664 67899999999876554
No 392
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.68 E-value=2.4e-15 Score=115.94 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|+...|.+|+++.|.|.+....+..+.|.-.-.. . .. .+...+...|.|.+++.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~-~~--------~~~~~~~~~l~l~~vs~- 59 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK------------K-EL--------LLPGNNRKVYELSNVQE- 59 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCE------------E-EE--------CSSSSSEEEEEEEEECS-
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCC------------c-cE--------eccCCceeEEEEEecCc-
Confidence 55677888899999999999997443334677531110 0 00 01112334789999984
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC--eEEEEEcCeeeCCCCce-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP--RISWRRENNAILPTGGS- 182 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~- 182 (386)
| |.|.|.+. ..+...++.+.|.|+.+|......+....+.+|+.++|.|.+.+. |.. .++|++++..+......
T Consensus 60 ~-g~y~C~~~-c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~ 137 (185)
T 1iam_A 60 D-SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG 137 (185)
T ss_dssp C-BCCEEEEE-CSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT
T ss_pred C-CEEEEEEE-CCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCC
Confidence 4 99999985 334567889999999888666544444458899999999999774 443 48999999877432100
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.....+|.+.....+|.+.|+|+|.+..+
T Consensus 138 ~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 138 EPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred ccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 01233577776666666699999998765
No 393
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.68 E-value=2.4e-16 Score=129.87 Aligned_cols=176 Identities=20% Similarity=0.297 Sum_probs=108.9
Q ss_pred ceEEEeCCccEEEEEEeee--eCCCeEEEEEcCe--e---e---C-C----------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGG--HPTPRISWRRENN--A---I---L-P----------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~--~---~---~-~----------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+ .....+.|++... . + . . ..+... ....|.|.+++
T Consensus 7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (248)
T 3u2s_H 7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR 86 (248)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 4567889999999999965 2346799998431 1 0 0 0 011111 12369999999
Q ss_pred CCCCeEEEEEEecCC---------------------CCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEE
Q psy8823 196 KEDRGTYYCVAENGV---------------------GKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVE 250 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~ 250 (386)
.+|+|.|.|.+.+.. .........+.|. .+|.+....+......|+.++|.|.+.
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~ 166 (248)
T 3u2s_H 87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 166 (248)
T ss_dssp GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEE
T ss_pred HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEe
Confidence 999999999998641 0111223455554 345555444444455799999999998
Q ss_pred ec-C-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 251 AY-P-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 251 g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+. | +..+.|++++........... ...+......+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 167 ~~~P~~~~v~W~~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 167 DYFPEPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred eEECCCeEEEEeECCccCceeecCce---ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 74 4 347999998864211111110 1112223345678899988888 9999999999887776665543
No 394
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.2e-15 Score=129.42 Aligned_cols=183 Identities=18% Similarity=0.298 Sum_probs=112.2
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--------------CCcEEEEecCCccccccccccCCce--eE-Eeccceeee-c-
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--------------DYPVIWMKVDRNKVTEPLPISTGSS--LI-IRDSRFAIR-Y- 89 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--------------~~~v~W~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-~- 89 (386)
..+....+.+|++++|.|.+...+ ...+.||+.........+.+..+.. .. ..+++..+. .
T Consensus 163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~ 242 (401)
T 3f8u_B 163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD 242 (401)
T ss_dssp ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence 345567799999999999987433 2459999865332222222222211 00 011111111 0
Q ss_pred -----CCCcceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCc-cEEEEEEeeee-
Q psy8823 90 -----DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ-PVQLECFAGGH- 162 (386)
Q Consensus 90 -----~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~~~- 162 (386)
....++.+|.|.+++.+|+|.|.|.+.+.. ......+.|.|..+|.+.........+..|+ .++|.|.+.+.
T Consensus 243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gfy 321 (401)
T 3f8u_B 243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY-LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321 (401)
T ss_dssp CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEB
T ss_pred ccccccccCCcEEEEECcCCHhhCceEEEEEEecc-cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCc
Confidence 123578899999999999999999998753 3345677888888887654322221134676 79999999875
Q ss_pred CC--CeEEEE-EcCe---eeCC------------CCceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 163 PT--PRISWR-RENN---AILP------------TGGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 163 ~~--~~v~W~-~~~~---~~~~------------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
|. +.++|+ +++. .... .+........|.+...+.++ .+.|+|.+.|..-.
T Consensus 322 P~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~ 390 (401)
T 3f8u_B 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLP 390 (401)
T ss_dssp SSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSC
T ss_pred CCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCC
Confidence 44 689995 7652 1111 11122234567777664334 45999999997643
No 395
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.67 E-value=4.5e-16 Score=127.02 Aligned_cols=175 Identities=19% Similarity=0.303 Sum_probs=111.1
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCe--e---e---CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENN--A---I---LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~--~---~---~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+ .....+.|++... . + .. ..+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS 88 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence 467889999999999965 2345799997431 1 1 00 011111 123599999999
Q ss_pred CCCeEEEEEEecCC-----CC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCC
Q psy8823 197 EDRGTYYCVAENGV-----GK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKED 263 (386)
Q Consensus 197 ~d~g~y~C~~~~~~-----~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~ 263 (386)
+|+|.|.|.+.+.. +. .......|.|. .+|.+....+...+..|+.++|.|.+.+.++ +.+.| ++
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~ 166 (230)
T 3n9g_H 89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS 166 (230)
T ss_dssp GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CC
Confidence 99999999998753 11 11233456663 3455554344444568999999999988543 36999 54
Q ss_pred eeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 264 TQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.. +....... ........+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus 167 ~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 167 GA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp GT--BCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred cc--cCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 44 21111100 001111223345689999999999 99999999998887776666554
No 396
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.66 E-value=8.6e-16 Score=108.49 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=76.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+++.|.|.+.+.|.+.|+|+|++..+. .+.++.+.. ....++|.|
T Consensus 10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~--------------~~~~~~~~~--~~~~~~L~I 73 (107)
T 3knb_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA--------------ASERLSFPA--DGAEHGLLL 73 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC--------------CCSSEECCE--ETTEEEEEE
T ss_pred CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccc--------------ceeeEEEee--cCceEEEEE
Confidence 4567899999999999999999999999999999999999886542 122333322 234568999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|
T Consensus 74 ~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~pP 107 (107)
T 3knb_B 74 TAALPTDAGVYVCRARNAAGE-AYAAAAVTVLEPP 107 (107)
T ss_dssp SSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred ecCChhhCEEEEEEEEECCCE-EEEEEEEEEEcCC
Confidence 999999999999999987654 4667888888765
No 397
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.66 E-value=1.3e-15 Score=107.05 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred cCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 238 ALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
..+..+.|.|.+.|.|.|.+.|++++.. +...................+.|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 91 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAI--LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEE--ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEE--CCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence 4577899999999999999999999988 54444322221112222346779999999999999999999999999999
Q ss_pred EEEEEEecCC
Q psy8823 318 VELFESIIPV 327 (386)
Q Consensus 318 ~~l~v~~~p~ 327 (386)
+.|.|...|.
T Consensus 92 ~~l~V~~~P~ 101 (103)
T 1wwb_X 92 ISAHFMGWPG 101 (103)
T ss_dssp EEECCSCCCC
T ss_pred EEEEECCCCC
Confidence 9999877664
No 398
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.65 E-value=1.7e-15 Score=122.84 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=106.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+...|....+.+|++|+|.|.+.+.+ ...+.||+.........+............+|+....+...++++|.|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 34446667799999999999997543 3569999965322111111111110001145666665555677899999999
Q ss_pred CCCCeEEEEEeEEccc-----c--eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCee
Q psy8823 105 ETDAGYYRCQVIIGIN-----N--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNA 175 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~ 175 (386)
.+|+|.|.|.+.+... . .......|.|........ ...+.+.. ..++|.|.+.+. |.+ .++|+++ ..
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~--~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~ 159 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT--KPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK 159 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB--CCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc--CCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence 9999999999976421 1 112334677764211111 11222222 235899999875 443 8999998 66
Q ss_pred eCCCCceE--EeeeEEEECCCCC-CCCeEEEEEEecCCC
Q psy8823 176 ILPTGGSI--YRGSILKIPQITK-EDRGTYYCVAENGVG 211 (386)
Q Consensus 176 ~~~~~~~~--~~~~~l~i~~~~~-~d~g~y~C~~~~~~~ 211 (386)
+....... ..++.+.+..... ++.|.|+|.+.|...
T Consensus 160 ~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 160 ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp EEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred EecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence 53221111 1123344433333 678899999998754
No 399
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=107.97 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=79.0
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... .....|.|.++..+|+|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~ 78 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE--LQESSKIHYTNT-----SGVLTLEILDCHTDDSGT 78 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEE-----TTEEEEEECSCCGGGCEE
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEE--CCCCCCEEEEEC-----CCEEEEEEcCCCcccCEE
Confidence 4567777777778889999999999999999999999999988 544444443211 134679999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEec
Q psy8823 303 YICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
|+|.|.|..|..+.++.|.|...
T Consensus 79 Y~C~a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 79 YRAVCTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEeCCCcEEEEEEEEEECC
Confidence 99999999999999999988753
No 400
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.64 E-value=2.4e-17 Score=132.96 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=105.5
Q ss_pred CCeeeee-ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 24 TPTISYI-SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 24 ~p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+|.+.+. |....+.+|++++|.|.+.+.+. ..|.| ++ ...... . .+......++++ ....+|.
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~-~---~~~~~~~~~g~~-------~~~~~L~ 69 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSA-V---QGPPERDLCGCY-------SVSSVLP 69 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCC-E---ECCCCCCSTTCC-------CEEEECT
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCc-c---cCCceECCCCcE-------EEEEEEE
Confidence 4555554 66666899999999999987643 67999 43 322110 0 000000001111 1445899
Q ss_pred EcccCCCCCeEEEEEeEEcccce-eeeEEE-EEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCee
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNK-ISAEVD-LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNA 175 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~-l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~ 175 (386)
|.+++.+|+|.|+|.+.+..... ..+.+. +.+..+|.+....+....+..|+.++|.|.+.|.++ +.++|+++|..
T Consensus 70 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 149 (214)
T 1ow0_A 70 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE 149 (214)
T ss_dssp TTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred EeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE
Confidence 99999999999999998754322 122222 123345654332222222457888999999988643 48999999987
Q ss_pred eCCCCc-----eE---------EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 176 ILPTGG-----SI---------YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 176 ~~~~~~-----~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..... .. .....|.+.....++.|.|+|.+.|....
T Consensus 150 l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 150 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 644310 11 11233455554445688999999997643
No 401
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.64 E-value=5.7e-16 Score=128.80 Aligned_cols=173 Identities=17% Similarity=0.271 Sum_probs=104.2
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---e---CC----------CCceEE------eeeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---I---LP----------TGGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~---~~----------~~~~~~------~~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.. ...+.|++... . + .. ..+... ....|.|.+++.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 88 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTD 88 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHH
Confidence 35688999999999996532 45799997431 1 1 00 011111 1235999999999
Q ss_pred CCeEEEEEEecCCC------C-ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCe
Q psy8823 198 DRGTYYCVAENGVG------K-GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDT 264 (386)
Q Consensus 198 d~g~y~C~~~~~~~------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~ 264 (386)
|+|.|.|.+.+... . .......|.|. .+|.+....+...+..|+.++|.|.+.+.++ +.+.| ++.
T Consensus 89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~ 166 (263)
T 3iu4_H 89 DTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSG 166 (263)
T ss_dssp GCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred HCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCc
Confidence 99999999987531 0 11123355553 3455553334444568899999999988543 47999 443
Q ss_pred eeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 265 QQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
. +...... .........+...+.|.|.....+| |.|+|.|.|..+.......+.
T Consensus 167 ~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~ 221 (263)
T 3iu4_H 167 A--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 221 (263)
T ss_dssp T--BCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECC
T ss_pred c--cCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEc
Confidence 3 1111100 0001111222345689999998889 999999999988766655554
No 402
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.64 E-value=3.4e-16 Score=111.48 Aligned_cols=102 Identities=20% Similarity=0.381 Sum_probs=68.8
Q ss_pred EEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
+.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +......... .....|.|.++..
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~-------~~~~~L~i~~v~~ 73 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET--LVEDSGIVLK-------DGNRNLTIRRVRK 73 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSB--CCCBTTEEEE-------TTTTEEEECSCCG
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeE--cccCCCeEEe-------CCCcEEEEeecCc
Confidence 456677788888878888889999999999999999999999999987 4333333221 1356799999999
Q ss_pred CCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 298 RQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
+|+|.|+|.|.|..|....++.|.|...|..
T Consensus 74 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 104 (108)
T 3kvq_A 74 EDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104 (108)
T ss_dssp GGCEEEEEEEC----CEEEEEEEEEEC----
T ss_pred ccCEEEEEEEEeCCCceEEEEEEEEeCCCcc
Confidence 9999999999999999999999999876653
No 403
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.63 E-value=1.5e-15 Score=105.96 Aligned_cols=95 Identities=23% Similarity=0.374 Sum_probs=73.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.||.|...+.+..+.+|+.+.|.|.+.+.|.+.++|++++..+... ...++.... .....+|.|.+
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~------------~~~~~~~~~--~~~~~~L~I~~ 69 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQ------------EQGRFHIEN--TDDLTTLIIMD 69 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTT------------GGGTEEEEE--CSSEEEEEESS
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeee------------ccceeeeec--ccceEEEEEcC
Confidence 4688888888888999999999999999999999999988665211 112233222 23456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 70 ~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 98 (100)
T 3knb_A 70 VQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98 (100)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCccCCEEEEEEEEECCCE-EEEEEEEEEE
Confidence 9999999999999987654 4667777775
No 404
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-15 Score=128.92 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=111.0
Q ss_pred Ceeeeeccc-ee-eecCCcEEEEEEEeeC---CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQE-QI-KDIGGTVELKCSVQYA---QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~-~~-v~~G~~v~L~C~~~~~---~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.+.. .. +.+|++++|.|.+.+. +. ..|.|++++....... ........++.+ .....|
T Consensus 167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~-------~~~s~L 235 (376)
T 2aty_A 167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ----TQPREEQFNSTF-------RSVSEL 235 (376)
T ss_pred cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcc----cCCCCcccCCcE-------EEEEEE
Confidence 444443332 33 7899999999999866 22 3599999885542110 000000111112 223479
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~ 173 (386)
.|..++.+|+|.|+|.+.+..... ....+.+ .+..+|.+....... ...+|+.++|.|.+.|.+ ...|+|+|++
T Consensus 236 ~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 314 (376)
T 2aty_A 236 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMITDFFPEDITVEWQWNG 314 (376)
T ss_pred EechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCH-HHhcCCceEEEEEEEEeECCCcEEEEEECC
Confidence 999999999999999998764422 2223322 344566555433222 233588999999998863 3589999999
Q ss_pred eeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.... ........|.+.....+|.|.|+|.|.|....
T Consensus 315 ~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 315 QPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 8763211 11223456888888888899999999986543
No 405
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.63 E-value=8.4e-16 Score=124.98 Aligned_cols=172 Identities=20% Similarity=0.338 Sum_probs=105.4
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---e---CC----------C-CceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---I---LP----------T-GGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~---~~----------~-~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+. ....+.|++... . + .. . .+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 4678899999999998653 345799998431 1 1 00 0 11111 124599999999
Q ss_pred CCCeEEEEEEecCCC--------CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-C-CCeeEEEeC
Q psy8823 197 EDRGTYYCVAENGVG--------KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-P-PPAIVWIKE 262 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~ 262 (386)
+|+|.|.|.+.+..+ ........|.|. .+|.+....+......|+.++|.|.+.+. | ++.+.| +
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~ 166 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N 166 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--G
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--C
Confidence 999999999976421 001122345553 34444433333345678999999999885 4 347999 4
Q ss_pred CeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 263 DTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
+.. ...... .......+..+...+.|.|.+...+| |.|+|.|.|..+.......+
T Consensus 167 ~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 167 SGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp GGT--CCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred Ccc--ccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 433 111110 00001112223345689999999989 99999999998876554443
No 406
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.62 E-value=4.4e-16 Score=127.14 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=107.6
Q ss_pred cCCeeeeecc-cee-eecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQ-EQI-KDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~-~~~-v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+|.+.+.++ ... +..|+.++|.|.+.+.. ...|+|++++..+.... ........++.|.. ..
T Consensus 21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~----~~~~~~~~~g~~~~-------~s 89 (240)
T 4acp_A 21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRV-------VS 89 (240)
T ss_dssp --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCE----ECCCEEC---CEEE-------EE
T ss_pred CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCce----eccceECCCCeEEE-------EE
Confidence 3566666544 333 55699999999999753 34699999987653210 00000111233332 23
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccc-eeeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINN-KISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
.|.|.....+|.|.|+|++.+.... .....+.+ .+..+|.+....+... ..+|+.++|.|.+.+. |.+ .++|++
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k 168 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWES 168 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEE
Confidence 7888888888999999999976542 22333332 2334554443322211 1248899999999885 443 799999
Q ss_pred cCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|..+... +........|.+......+.|.|+|.+.+....
T Consensus 169 ~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~ 218 (240)
T 4acp_A 169 NGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 218 (240)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence 99875421 122223456777776667889999999997643
No 407
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.62 E-value=2.5e-15 Score=103.69 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--eeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++ .. +......... .....|.|.++..+|+|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~--~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~ 72 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA--LAPELLVDAK-------SSTTSIFFPSAKRADSGN 72 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCB--CSTTSEEEEE-------TTEEEEECTTBCGGGCEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcc--cCCcEEEEec-------CCEEEEEECCCChhcCEE
Confidence 466666666778889999999999999999999999999 65 4333222111 235789999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEE
Q psy8823 303 YICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v 322 (386)
|+|.|.|..|..+.++.|.|
T Consensus 73 Y~C~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 73 YKLKVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999888876
No 408
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=104.87 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=76.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 77 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT--VQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAY 77 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEE--ECCCSSSCEEEE----TTTEEEEEESSCCGGGCEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEE--CcCCCcEEEEEc----CCCeEEEEECCCCcccCEEE
Confidence 466776667777888999999999999999999999999987 433322211111 11235899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEec
Q psy8823 304 ICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
+|.|.|..|..+.++.|.|...
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 78 ACVAKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEEEEEEEec
Confidence 9999999999999999988754
No 409
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.62 E-value=8.7e-15 Score=139.97 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=128.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCC-CCCCCeEEEEEEecCCCCceeeeEEEEEE---ec
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVE---FA 225 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---~~ 225 (386)
...+.|.|.+.|.|.+.+.|.++|..+... ....+.|..+ .....+.|.|.+.+..|......+.+.+. .+
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~ 165 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW-----NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT 165 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC-----EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce-----eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence 457899999999999999999999875322 2234566654 23334789998887777644333333322 35
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeE-EE--eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIV-WI--KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
|.+. .+....+..|+++.|.|.+.|.|.|.+. |+ +++.. +.......+ ......+.|.|.++...|.|.
T Consensus 166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~--l~~~~~~~~-----~~~~~~~~l~I~~~~~~d~g~ 237 (731)
T 2v5y_A 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD--APLKEIKVT-----SSRRFIASFNVVNTTKRDAGK 237 (731)
T ss_dssp CEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCC--EEEEEEEEC-----CSSEEEEEEEECSCCTTTCEE
T ss_pred cccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcc--ccccceEEe-----ccccceEEEEEcccccccCeE
Confidence 5555 4456778899999999999999999888 77 56665 322111111 111235789999999999999
Q ss_pred EEEEEEcCCCc-eeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 303 YICRAANKLGT-SEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 303 Y~C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
|+|.|.|..|. .+..+.|.|..+|.++..+. ........+.+.|..
T Consensus 238 Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~-~~~~~~~~v~l~w~~ 284 (731)
T 2v5y_A 238 YRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ-LASVGATYLWIQLNA 284 (731)
T ss_dssp EEEEEEETTEEEECCCEEEEEECCCCBSSCCE-EEEECSSCEEEECCC
T ss_pred EEEEEECCCCCcceeeEEEEEecCCCCCCCcc-eeccCCceEEEEeCC
Confidence 99999999998 67778888887776443332 222334567777765
No 410
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.62 E-value=7.3e-15 Score=114.14 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=109.3
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+.+.|+...|.+|+++.|.|......+..+.|.-.-.. ... +. ......+.|.+++
T Consensus 3 f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~~~--~~--------g~~~~~~~ls~vs 60 (196)
T 3bn3_B 3 FWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRR------------NGT--QR--------GLRWLARQLVDIR 60 (196)
T ss_dssp SCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEE------------EEE--EE--------ETTEEEEEEEEEC
T ss_pred cEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCC------------eeE--cc--------ccCceEEEEEEEc
Confidence 4577788888899999999999997444435777542110 000 00 1122258999998
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCe--EEEEEcCeeeCCCC-
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPR--ISWRRENNAILPTG- 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~--v~W~~~~~~~~~~~- 180 (386)
+|.+.|.|.+.. .+...++.+.|.|+.+|......+....+.+|+.++|.|.+.+. |... ++|++++..+....
T Consensus 61 -~d~~~~~C~~~c-~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~ 138 (196)
T 3bn3_B 61 -EPETQPVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF 138 (196)
T ss_dssp -SSEECCEEEEEE-TTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC
T ss_pred -cCCCceEEEEEC-CCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc
Confidence 888889999754 34667889999999888655433332237899999999999764 4444 89999988763211
Q ss_pred -----ceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 181 -----GSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 181 -----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
........+.+.....+|...|+|+|.+..+
T Consensus 139 ~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 139 AGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp TTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred ccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence 0011224566666665555699999998665
No 411
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.62 E-value=1e-14 Score=101.90 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=76.5
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....+...... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK--IERSDRIYWYWP----EDNVCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEE--CCCCCCEEEEEc----CCCEEEEEECCCCcCCCEEE
Confidence 356676677778889999999999999999999999999988 444443332211 11356899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEe
Q psy8823 304 ICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~ 324 (386)
+|.|.|..|....++.|.|..
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 78 MVKAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCcEEEEEEEEEec
Confidence 999999999999999988853
No 412
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.62 E-value=3.1e-15 Score=124.11 Aligned_cols=173 Identities=20% Similarity=0.335 Sum_probs=105.2
Q ss_pred EEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---e---CC-----------CCceEE------eeeEEEECCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---I---LP-----------TGGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~---~~-----------~~~~~~------~~~~l~i~~~~~~ 197 (386)
+.+.+|++++|.|.+.+. ....+.|++... . + .. ..+... ....|.|.+++.+
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 112 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE 112 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence 458899999999998653 245799997431 1 0 00 011111 1235999999999
Q ss_pred CCeEEEEEEecCCC---------C-ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCC-CeeEEEe
Q psy8823 198 DRGTYYCVAENGVG---------K-GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPP-PAIVWIK 261 (386)
Q Consensus 198 d~g~y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~~ 261 (386)
|+|.|.|.+.+..+ . .......+.|. .+|.+....+...+..|+.++|.|.+.+ .|. +.+.|
T Consensus 113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-- 190 (256)
T 3sob_H 113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 190 (256)
T ss_dssp GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence 99999999987431 1 11223455554 3444443333444568999999999987 442 37999
Q ss_pred CCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 262 EDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
++.. +...... .........+...+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 191 ~~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 191 NSGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp GGGT--BCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CCcc--cCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence 4443 2111110 0001112223345689999999999 9999999999987776666544
No 413
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.62 E-value=5e-15 Score=105.16 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=78.1
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.
T Consensus 11 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~ 83 (107)
T 3irg_B 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQ--LAASERLSFPAD-----GAEHGLLLTAALPTDAGV 83 (107)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEECCEE-----TTEEEEEESSCCGGGCEE
T ss_pred CCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeE--CCCCCcEEEEeC-----CCEEEEEEccCCHHhCEE
Confidence 4567777777778889999999999999999999999999987 444444433211 124489999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEecC
Q psy8823 303 YICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
|+|.|.|..|....++.|.|..+|
T Consensus 84 Y~C~a~n~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 84 YVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC--
T ss_pred EEEEEEcCCCcEEEEEEEEEEcCC
Confidence 999999999999999999987654
No 414
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.61 E-value=9e-15 Score=102.19 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=77.2
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y 77 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA--ITQGGKYKLSED-----KGGFFLEIHKTDTSDSGLY 77 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEE--CcCCCCEEEEEe-----CCEEEEEECCCCcccCEEE
Confidence 456677677778889999999999999999999999999987 555555544321 1345799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEe
Q psy8823 304 ICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~ 324 (386)
+|.|.|..|....++.|.|..
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 78 TCTVKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEeCCCcEeEEEEEEEEe
Confidence 999999999999999988863
No 415
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=108.03 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=80.7
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
++|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++.. +........... ......|.|.++..+|+|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP--VRPDSAHKMLVR----ENGVHSLIIEPVTSRDAGIY 81 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSB--CCCCSSEEEEEC----TTSCEEEEESSCCGGGCSBB
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEE--CCCCCceEEEEe----cCCeEEEEEeeCCcccCEEE
Confidence 466777777778889999999999999999999999999887 433332221111 11256899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
+|.|.|..|..+.++.|.|...|..|.
T Consensus 82 ~C~a~n~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 82 TCIATNRAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp CEEEECSSCEEEECCEEEEECCCCSSS
T ss_pred EEEEECCCCEEEEEEEEEEeCCCCCCC
Confidence 999999999999999999998777554
No 416
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.59 E-value=7.5e-15 Score=105.20 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee--cCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT--ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
.+..+.|.|.+.|+|.|+++|++||.. +....+........ ......+.|.|.++...|+|.|+|.|.|..|....
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~--l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~ 91 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEE--CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEE--CCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence 567899999999999999999999988 55544433221110 11123578999999999999999999999999999
Q ss_pred EEEEEEEecCCC
Q psy8823 317 TVELFESIIPVC 328 (386)
Q Consensus 317 ~~~l~v~~~p~~ 328 (386)
++.|.|...|..
T Consensus 92 t~~l~v~~~P~~ 103 (126)
T 1he7_A 92 SIMAAFMDNPFE 103 (126)
T ss_dssp EEEECCCSCTTS
T ss_pred EEEEEEEcCCCC
Confidence 999988877754
No 417
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.59 E-value=1.2e-13 Score=106.53 Aligned_cols=156 Identities=15% Similarity=0.291 Sum_probs=105.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeC-CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAIL-PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
....+.+|+++.|.|.+....+..+.|.-. ++... ... .....|.|.+++. .|.|.|.+..... ...+.+.|
T Consensus 7 ~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~---~~~~~l~l~~vs~--~g~y~C~~~c~~~-~~~~~~~l 80 (185)
T 1iam_A 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG---NNRKVYELSNVQE--DSQPMCYSNCPDG-QSTAKTFL 80 (185)
T ss_dssp SEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSS---SSEEEEEEEEECS--CBCCEEEEECSSC-EEEEECEE
T ss_pred CCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccC---CceeEEEEEecCc--CCEEEEEEECCCC-ceEEEEEE
Confidence 345689999999999996543444777531 11111 110 1234588999973 3999999865433 47788999
Q ss_pred EEEecce-EeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 221 EVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 221 ~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|+.+|. +.+.+....+.+|+.++|.|.+.|..++ +++|++++.. +..... .....+.+|++....
T Consensus 81 ~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~--l~~~~~--------~~~~~~~tl~~~~~r 150 (185)
T 1iam_A 81 TVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--LKREPA--------VGEPAEVTTTVLVRR 150 (185)
T ss_dssp EEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE--EEEEEC--------CTTTEEEEEEEECCS
T ss_pred EEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEE--cccccC--------CCccccEEEEEecee
Confidence 9998876 4444444568899999999999985443 5899999988 332210 011134467777666
Q ss_pred cCCCeEEEEEEEcCCCce
Q psy8823 297 KRQYGSYICRAANKLGTS 314 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~ 314 (386)
.+|+..|+|.|.|..+..
T Consensus 151 eD~g~~~sC~A~~~l~~~ 168 (185)
T 1iam_A 151 DHHGAQFSCRTELDLRPQ 168 (185)
T ss_dssp SCSSCEEEEEEEEECGGG
T ss_pred ccCCCeEEEEEEecCccc
Confidence 777779999999998743
No 418
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=105.13 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=76.5
Q ss_pred EEecceEeeC---CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEFAPVITVP---KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
+..+|.+... .....+.+|+.+.|.|.+.|.|.|.+.|++++.. +. ..++.+.. ......|.|.++..+
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~--l~-~~~~~~~~-----~~~~~~L~i~~~~~~ 89 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP--LD-TSRVHVRT-----SDFDTVFFVRQAARS 89 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEE--CC-CSSCEEEE-----CSSEEEEEESSCCTT
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEE--CC-CCcEEEEE-----CCCeEEEEECCCChh
Confidence 3456666543 3556788899999999999999999999999988 43 22322221 123567999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 90 D~G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 90 DSGEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp TCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 9999999999999999999999998765
No 419
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.59 E-value=1e-13 Score=119.16 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=112.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC--------------CCeEEEEEc--Ce--ee-C--C---------CCc----------
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--------------TPRISWRRE--NN--AI-L--P---------TGG---------- 181 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~-~--~---------~~~---------- 181 (386)
+..+.+.+|++++|.|.....+ ...+.|++. ++ .+ . . ..+
T Consensus 165 ~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~ 244 (401)
T 3f8u_B 165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDD 244 (401)
T ss_dssp CSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCC
T ss_pred CCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccc
Confidence 3456788999999999885432 346999973 21 00 0 0 000
Q ss_pred ----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCccc-ccCCC-cEEEEEEEEec-CC
Q psy8823 182 ----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG-QALQY-DMDLECHVEAY-PP 254 (386)
Q Consensus 182 ----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~g~-p~ 254 (386)
....+..|.|.+++.+|+|.|.|.+.+..+. ....+.+.|..+|.+...+.... ...|+ .++|.|.+.|. |.
T Consensus 245 ~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~ 323 (401)
T 3f8u_B 245 EPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPS 323 (401)
T ss_dssp CSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSS
T ss_pred ccccccCCcEEEEECcCCHhhCceEEEEEEecccc-eeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCC
Confidence 1124568999999999999999999987654 45677888888888776544433 45676 89999999885 55
Q ss_pred --CeeEEE-eCCee-eeeecCc-e--eEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEEcCC---CceeeEEEE
Q psy8823 255 --PAIVWI-KEDTQ-QVLTNNQ-H--YSISHFATADEFTDTTIRVITIEK-RQYGSYICRAANKL---GTSEKTVEL 320 (386)
Q Consensus 255 --~~~~W~-~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~---g~~~~~~~l 320 (386)
+.+.|. +++.. ....... . .......+..+...+.|.+...+. ++.+.|+|.+.|.. +..+.++.|
T Consensus 324 ~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL 400 (401)
T 3f8u_B 324 GGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400 (401)
T ss_dssp TTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred CCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence 689995 76521 0011111 0 001111222233455677766543 34568999999987 555555543
No 420
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=104.70 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=80.1
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++.+... ......|.|.++..+|+|.
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~--~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEM--VQFNTDRISLYQD----NTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEE--CCCCBTTEEEEEC----TTCEEEEEEEEECGGGCEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEE--CcCCCCeEEEEeC----CCCeEEEEECCCCcccCEE
Confidence 467777777788899999999999999999999999999987 432 233333211 1124489999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 303 YICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|.|..|....++.|.|...|..+
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred EEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence 999999999999999999998777543
No 421
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=100.48 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=75.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +..... +... .......|.|.++..+|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~--~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~ 76 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP--VRPDQRRFAEE-----AEGGLCRLRILAAERGDAGF 76 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEE--CCCBTTEEEEE-----CGGGEEEEEESSCCGGGCEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEE--CCCCCCEEEEE-----CCCCEEEEEEccCCcCCCEE
Confidence 456777777777889999999999999999999999999987 433222 2211 11134579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEe
Q psy8823 303 YICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|+|.|.|..|....++.|.|..
T Consensus 77 Y~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 77 YTCKAVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEECCCceeEEEEEEEEC
Confidence 9999999999999999988864
No 422
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=103.98 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=74.8
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....... ......|.|.++..+|+|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~--------~~~~~~L~i~~v~~~D~G 77 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP--IQYARSTC--------EAGVAELHIQDALPEDHG 77 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSB--CSSCCCEE--------ETTEEEEEECSCCTTCCB
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEE--CcccceEe--------eCCeEEEEECCCChhhCE
Confidence 45677787777788899999999999999999999999999887 43322211 113578999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEE
Q psy8823 302 SYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|+|.|.|..|..+.++.|.|
T Consensus 78 ~Y~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 78 TYTCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp CEEEEEECSSCEEEEECCEEE
T ss_pred EEEEEEEECCCeEEEEEEEEE
Confidence 999999999999988888776
No 423
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.59 E-value=2.3e-14 Score=114.65 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=96.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e--eC--------CCCceEE-------eeeEEEECCCCCCCCeEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A--IL--------PTGGSIY-------RGSILKIPQITKEDRGTY 202 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~--~~--------~~~~~~~-------~~~~l~i~~~~~~d~g~y 202 (386)
+..+.+.+|++++|.|.+.+.. +.+.|++... . .. ...+... ....|.|.+++.+|+|.|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 86 (207)
T 1ypz_E 8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY 86 (207)
T ss_dssp CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred CCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence 4567789999999999997654 4799998542 1 10 0111111 124799999999999999
Q ss_pred EEEEecCCC---------C-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeec
Q psy8823 203 YCVAENGVG---------K-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTN 270 (386)
Q Consensus 203 ~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~ 270 (386)
.|.+.+..+ . .......|.|...+.... .+.+.+.. ..+.|.|.+.+. |. +.+.|+++ .. +..
T Consensus 87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~-~P~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~--l~~ 161 (207)
T 1ypz_E 87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA-KPSVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KK--IVE 161 (207)
T ss_dssp EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC-CCEEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SE--EEE
T ss_pred EEEEecCCcccccccccceeeecCccEEEEccCCCCCC-CCeEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-Cc--ccC
Confidence 999987632 1 112234666654211111 11111111 237999999875 44 69999999 55 322
Q ss_pred CceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCcee
Q psy8823 271 NQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~ 315 (386)
.... ... . .++.+.+.... .+|.|.|+|.|.|..+..+
T Consensus 162 ~~~~-~~~--~----~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 162 FDPA-IVI--S----PSGKYSAVKLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp CCCE-EEE--C----TTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred Cccc-eEE--c----CCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence 2111 000 0 12233333433 3778999999999987544
No 424
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-15 Score=102.81 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=75.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +. ...++.. ...+.|.|.++..+|+|.
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~ 76 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT--FPGRDPRATI--------QEQGTLQIKNLRISDTGT 76 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSE--ESSSCSSCEE--------CTTCCEEEESCCTTTCCE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEE--CCCCCCCEEE--------cCCCEEEEccCCcccCEE
Confidence 356676677777888999999999999999999999999887 43 2222221 134579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEec
Q psy8823 303 YICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
|+|.|.|..|....++.|.|...
T Consensus 77 Y~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 77 YTCVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp EEEEEECSSCCCBCCEEEEEESC
T ss_pred EEEEEEcCCCCEEEEEEEEEecC
Confidence 99999999999999999988754
No 425
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.58 E-value=1.2e-14 Score=110.46 Aligned_cols=106 Identities=22% Similarity=0.410 Sum_probs=83.1
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... ......|.|.++..+
T Consensus 35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~--~~~~~~~~~~~~----~~~~~~L~I~~v~~~ 108 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP--VKESRHFQIDYD----EEGNCSLTISEVCGD 108 (154)
T ss_dssp CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCSSSEEEEEC----TTCEEEEEESSCCGG
T ss_pred cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEE--CCCCCcEEEEEC----CCCeEEEEECCCChh
Confidence 34455678888777788899999999999999999999999999987 555544443211 112468999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
|+|.|+|.|.|..|....++.|.|...|....
T Consensus 109 D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 109 DDAKYTCKAVNSLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECC-----
T ss_pred cCEEEEEEEEECCCeEEEEEEEEEeCcCcCCC
Confidence 99999999999999999999999987776443
No 426
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.58 E-value=1.9e-14 Score=100.77 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=75.4
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......++..... .....|.|.++..+|+|.|+
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~ 79 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT-----DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC-----SSEEEEEESSCCGGGCEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEec-----CCEEEEEEeecCcccCEEEE
Confidence 4556666667788899999999999999999999999998732223344443221 13578999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEe
Q psy8823 305 CRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|..|..+.++.|.|..
T Consensus 80 C~a~n~~g~~~~~~~l~V~~ 99 (100)
T 3irg_A 80 LSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999988853
No 427
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=2.3e-14 Score=102.75 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=74.4
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEec---CCCeeEEEeCCeeeeee--cCceeEEee-eeecCceeeeEEEEeecccCCC
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAY---PPPAIVWIKEDTQQVLT--NNQHYSISH-FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.+...+....+.+|++++|.|.+.|. |.|.|.|+|+... .+. ...++.+.. +..........|.|.++...|+
T Consensus 9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM-DLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC-CHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCc-ccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 35556677889999999999999875 8899999997421 111 123333321 1122223468899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 301 GSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|+|+|.|..|..++++.|.|...|.
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTG 114 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence 999999999999999999999998443
No 428
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=2e-14 Score=103.92 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=75.5
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.|.|.++|.+...... ...+...|.|.+.|+|.|.+.|++++.. +............. .....+.|.|.++..+
T Consensus 2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~--l~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~ 75 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQP--LRESKIIHVEYYQE-GEISEGCLLFNKPTHY 75 (118)
T ss_dssp --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEE--CCCSSSEEEEEEEC-SSEEEEEEEEESCCGG
T ss_pred EEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEE--CCCCCceeEEEecc-CccccEEEEECCCChh
Confidence 4667777775544221 1236678999999999999999999988 54444333322111 1234678999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus 76 d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 76 NNGNYTLIAKNPLGTANQTINGHFLKEPF 104 (118)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred cCEEEEEEEECCCCeEeeEEEEEEccCCC
Confidence 99999999999999999999998877664
No 429
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.57 E-value=3.2e-13 Score=107.43 Aligned_cols=180 Identities=11% Similarity=0.222 Sum_probs=123.0
Q ss_pred EEeCCccEEEEEEee-eeC---CCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCce-eeeEEE
Q psy8823 146 VVSEGQPVQLECFAG-GHP---TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~---~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l 220 (386)
.+..|+.++|.|.+. |.| +..++|+|++..+... ...|.+..+...|+|.|+|++.+..+... +..+.+
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtV 86 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEE
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC------cceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEE
Confidence 366899999999985 455 3479999999776432 34689999999999999999998766532 223333
Q ss_pred EEEecceEee-CCCcccccCCCcEEEEEEE--Ee-cC-----CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 221 EVEFAPVITV-PKPRLGQALQYDMDLECHV--EA-YP-----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 221 ~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~--~g-~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
.....+.+.. .+.......+..+.|.+.+ .| .| ..++.|++++.. +.. ...|+
T Consensus 87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~--Isg----------------Aq~lT 148 (304)
T 3shs_A 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV--IDT----------------TQDIT 148 (304)
T ss_dssp ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEE--EES----------------SSEEE
T ss_pred eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeE--ccC----------------ccccc
Confidence 3222223333 2333445667889999887 43 44 358999999976 322 33466
Q ss_pred EeecccCCCeEEEEEEEcCCC--ceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 292 VITIEKRQYGSYICRAANKLG--TSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
+......++|.|+|.++|..+ ..+.++.+.+...+..........+..|+.+.|.-..
T Consensus 149 ~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
T 3shs_A 149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208 (304)
T ss_dssp ECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEE
T ss_pred eeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEE
Confidence 777788899999999999977 3345666666665554445555667777766665443
No 430
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=104.82 Aligned_cols=99 Identities=22% Similarity=0.336 Sum_probs=78.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++.+... ......|.|.++..+|+|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ--ISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCB--CCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSCC
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEE--CCCCCCeEEEEEC----CCcEEEEEECCCChhhCEEE
Confidence 56666666677888999999999999999999999999887 433 233333211 11235799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
+|.|.|..|.....+.|.|...|..|
T Consensus 82 ~C~a~N~~g~~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 82 TIMAANPQGRISCTGRLMVQAVNSGP 107 (110)
T ss_dssp EEEEECTTCCEEECCCEEEECCSCCS
T ss_pred EEEEEECCCeEEEEEEEEEECCCCCC
Confidence 99999999999999999998877654
No 431
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.56 E-value=7.5e-16 Score=112.19 Aligned_cols=111 Identities=19% Similarity=0.342 Sum_probs=85.2
Q ss_pred eeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 215 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
...+.|.|.++|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+......++.+..... .....+.|.|.
T Consensus 4 ~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~ 81 (122)
T 2cry_A 4 GSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTIS 81 (122)
T ss_dssp SCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECT
T ss_pred ceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEc
Confidence 3456778888998877 6778889999999999999999996 9999999873221233443322111 11235689999
Q ss_pred ecccCCC-eEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 294 TIEKRQY-GSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 294 ~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
++..+|. |.|+|.|.|..|.....+.|.|...+.
T Consensus 82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 116 (122)
T 2cry_A 82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116 (122)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred CCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence 9999998 999999999999999999988875443
No 432
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.55 E-value=7.6e-15 Score=103.73 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=76.6
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... .....|.|.++..+|+|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 85 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV--LSTSARHQVTTT-----KYKSTFEISSVQASDEGNY 85 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSC--CTTCSSEEEEEC-----SSEEEEEECCCCSSCCSEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEE--CCCCCCEEEEEC-----CCEEEEEECcCCchhCEEE
Confidence 356667777788899999999999999999999999999987 544445443321 1357899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|.|..|..+.++.|.|.
T Consensus 86 ~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 86 SVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp EECCBCSSCBCCEEEEEEEC
T ss_pred EEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999888774
No 433
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.55 E-value=9e-14 Score=96.59 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=72.3
Q ss_pred eeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 229 TVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 229 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
..++....+.+|+.+.|.|.+.|. |.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|
T Consensus 5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a 77 (97)
T 2bk8_A 5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQ--LENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKV 77 (97)
T ss_dssp ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEE
T ss_pred eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEE--CcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEE
Confidence 345556778899999999999997 8899999999987 555555544221 13558999999999999999999
Q ss_pred EcCCCceeeEEEEEEEe
Q psy8823 308 ANKLGTSEKTVELFESI 324 (386)
Q Consensus 308 ~n~~g~~~~~~~l~v~~ 324 (386)
.|..|....++.|.|..
T Consensus 78 ~n~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 78 VNDYGEDSSYAELFVKG 94 (97)
T ss_dssp ECSSCEEEEEEEEEETT
T ss_pred ECCCCeEeEEEEEEEEe
Confidence 99999999999988853
No 434
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=104.53 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=75.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++... ..+.|.|.++..+|+|.|
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~--~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y 77 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVL--VSTQDSRIKQL--------ENGVLQIRYAKLGDTGRY 77 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSB--CCTTSTTEEEE--------ETTEEEEESCCGGGCCCE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEE--CcCCCCeEEEc--------cCCEEEEccCCcCCCEEE
Confidence 56666666677888999999999999999999999999887 332 2333221 245899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+|.|.|..|....++.|.|...+.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~~~~ 101 (118)
T 2eo9_A 78 TCIASTPSGEATWSAYIEVQEFGV 101 (118)
T ss_dssp EEEEECSSCEEEEECCEEEECCSC
T ss_pred EEEEEcCCCcEEEEEEEEEEeCCC
Confidence 999999999999999998887654
No 435
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=99.70 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=72.5
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+ .|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~--l~~~~r~~i~~~-----~~~~~L~I~~v~~~D~G~Y~ 77 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLP--VQESDRLKVVQK-----GRIHKLVIANALTEDEGDYV 77 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEE--CCCCSSEEEEEC-----SSEEEEEESSCCGGGCSEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEE--CCCCCcEEEEEe-----CCEEEEEECCCChhhCEEEE
Confidence 4455666677788999999999999 88899999999988 555555554321 13467999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|.|. ..+.++.|.|..+|.
T Consensus 78 C~a~N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 78 FAPDAY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp EEESSS--CCCEEEEEEEECCSC
T ss_pred EEEcCC--CeeEEEEEEEeCCCC
Confidence 999998 556778888876654
No 436
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.54 E-value=2.2e-14 Score=99.28 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=70.0
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.| +.+.|++++.. +....++.. ....|.|.+++.+|+|.|+
T Consensus 9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~ 76 (95)
T 2ckn_A 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQ--LVESNRTRI---------TGEEVEVRDSIPADSGLYA 76 (95)
T ss_dssp SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBC--CCCCSSEEE---------CSSEEEESSCCGGGSEEEE
T ss_pred CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEe--cCCCCCEEE---------eCCEEEECCCChHHCEEEE
Confidence 34454555667788999999999999997 79999999987 444444332 2568999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 77 C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 77 CVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEeccCCCcEEEEEEEEE
Confidence 999999999998888876
No 437
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.53 E-value=9.5e-14 Score=98.51 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=71.4
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeee--cCceeEEeeeee-cCceeeeEEEEeecccCC
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLT--NNQHYSISHFAT-ADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d 299 (386)
|.+...+....+.+|++++|.|.+.|.|. |.+.|++++... .. ...++....... ........|.|.+++.+|
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVD-LSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEE-GGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccc-ccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 44555666777889999999999999998 899999987321 11 112333221111 112246789999999999
Q ss_pred CeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 300 YGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|+|.|.|..|..++++.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999885
No 438
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=106.57 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=104.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.+|+++.|.|.+....+..+.|.-.-..... ........+.+.+++ +|.+.|.|.+.... ....+.+.|.|
T Consensus 10 ~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~--~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~V 85 (196)
T 3bn3_B 10 RVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGT--QRGLRWLARQLVDIR-EPETQPVCFFRCAR-RTLQARGLIRT 85 (196)
T ss_dssp SEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEE--EEETTEEEEEEEEEC-SSEECCEEEEEETT-EEEEEECEEEE
T ss_pred CCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeE--ccccCceEEEEEEEc-cCCCceEEEEECCC-CceEEEEEEEE
Confidence 445789999999999996543436777532111000 000112348889988 77788999987654 44678899999
Q ss_pred EecceE-eeCCCcccccCCCcEEEEEEEEec-CCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 223 EFAPVI-TVPKPRLGQALQYDMDLECHVEAY-PPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 223 ~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
+..|.. .+.+....+.+|+.++|.|.+.+. |.. +++|++++.. +.... +. .. ..........+++.....+
T Consensus 86 y~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~--l~~~~-~~-~~-~~~~~~~t~~~~~~~~r~D 160 (196)
T 3bn3_B 86 FQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQE--LIRRS-FA-GE-PPRARGAVLTATVLARRED 160 (196)
T ss_dssp EBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEE--EEEEE-CT-TS-CTTCCCEEEEEEEECCGGG
T ss_pred ecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEE--eeccc-cc-cc-cccccceeEEEEEeeeecc
Confidence 988863 333333458899999999999875 443 4899999987 32211 00 00 0001113456777777777
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+..|+|.|.|..+
T Consensus 161 ~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 161 HGANFSCRAELDLR 174 (196)
T ss_dssp TTCEEEEEEEEECG
T ss_pred CCCeEEEEEEccCC
Confidence 77799999999887
No 439
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=99.35 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=73.5
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+.+.|.|.+ .|.+.+.|+|++..+. .+.++.+..+ ...++|.|
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~--------------~~~r~~i~~~--~~~~~L~I 65 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQ--------------ESDRLKVVQK--GRIHKLVI 65 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECC--------------CCSSEEEEEC--SSEEEEEE
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECC--------------CCCcEEEEEe--CCEEEEEE
Confidence 4457788888888999999999999999 6778899999986542 2233433332 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.|. ..+..+.|.|..+|.
T Consensus 66 ~~v~~~D~G~Y~C~a~N~---~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 66 ANALTEDEGDYVFAPDAY---NVTLPAKVHVISGPS 98 (100)
T ss_dssp SSCCGGGCSEEEEEESSS---CCCEEEEEEEECCSC
T ss_pred CCCChhhCEEEEEEEcCC---CeeEEEEEEEeCCCC
Confidence 999999999999999865 446677888887764
No 440
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.52 E-value=3.8e-13 Score=96.48 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+.. .+....+.+|+.++|.|.+.|.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 7 pp~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 85 (114)
T 2cqv_A 7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK 85 (114)
T ss_dssp CCEESC-CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred CCEEEe-CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence 455443 355678999999999999999999999999999888665544433 568999999999999999999999
Q ss_pred CCCceeeeEEEEEEecceE
Q psy8823 210 VGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p~~ 228 (386)
.+. ....+.|.|...|..
T Consensus 86 ~g~-~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 86 LGS-RQAQVNLTVVDKPDP 103 (114)
T ss_dssp SCE-EECCEEEEEECSCSC
T ss_pred CCc-EEEEEEEEEECCCCC
Confidence 886 566888888876653
No 441
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=116.89 Aligned_cols=174 Identities=19% Similarity=0.334 Sum_probs=105.5
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCee-----e---CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENNA-----I---LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~-----~---~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+ .....+.|++.... + .. ..+... ....|.|.+++.
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA 111 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence 356889999999999864 23467999984311 0 00 011111 123599999999
Q ss_pred CCCeEEEEEEecC-------C------------C-C----ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEE
Q psy8823 197 EDRGTYYCVAENG-------V------------G-K----GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECH 248 (386)
Q Consensus 197 ~d~g~y~C~~~~~-------~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~ 248 (386)
+|+|.|.|.+.+. . . . .......+.|. .+|.+....+......|+.++|.|.
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~ 191 (267)
T 3u1s_H 112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 191 (267)
T ss_dssp GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEE
T ss_pred hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEE
Confidence 9999999999620 0 0 0 01112345553 2444443333334467899999999
Q ss_pred EEe-cC-CCeeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 249 VEA-YP-PPAIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 249 ~~g-~p-~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.+ +| ++.+.| ++.. +...... ......+..+...+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus 192 ~~~~~p~~~~v~W--~~~~--~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 192 VKDYFPEPVTVSW--NSGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEBSSCCEEEE--GGGT--BCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeEEECCCeEEEE--CCcc--cCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 987 45 347999 5443 2111110 0001112223345679999998889 9999999999877665555443
No 442
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=1.3e-13 Score=96.19 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=71.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. +.++.... ...+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~--------------~~~~~~~~-~~~~~~~L~i~ 67 (99)
T 1g1c_A 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--------------SDRIYWYW-PEDNVCELVIR 67 (99)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEEEEE-EETTEEEEEEC
T ss_pred CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCC--------------CCCEEEEE-cCCCEEEEEEC
Confidence 3568888888888999999999999999999999999998865421 11111111 11245589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 68 ~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~ 97 (99)
T 1g1c_A 68 DVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCcCCCEEEEEEEEECCCc-EEEEEEEEEe
Confidence 99999999999999987543 4556677765
No 443
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=99.02 Aligned_cols=102 Identities=23% Similarity=0.402 Sum_probs=78.3
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. ...++....+. .+..+|.|
T Consensus 12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~-------------~~~~~~~~~~~-~~~~~L~I 77 (116)
T 2kkq_A 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF-------------NTDRISLYQDN-TGRVTLLI 77 (116)
T ss_dssp CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCC-------------CBTTEEEEECT-TCEEEEEE
T ss_pred CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcC-------------CCCeEEEEeCC-CCeEEEEE
Confidence 45678888888999999999999999999888889999998865421 12333333222 24558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|..
T Consensus 78 ~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 78 KDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQ 113 (116)
T ss_dssp EEECGGGCEEEEEEEEETTEE-EEEEEEEEEECCSCC
T ss_pred CCCCcccCEEEEEEEEcCCCe-EEEEEEEEEeCCCCC
Confidence 999999999999999987554 467888888877643
No 444
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=3.4e-14 Score=104.96 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCee--------------------------eee-ecCceeEEeeeeecCc
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ--------------------------QVL-TNNQHYSISHFATADE 284 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~--------------------------~~~-~~~~~~~~~~~~~~~~ 284 (386)
+....+.+|+.+.|.|.+.|.|.|.+.|++++.. ..+ ....++.+...
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~----- 99 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT----- 99 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE-----
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeC-----
Confidence 3456788999999999999999999999999821 001 12223322211
Q ss_pred eeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 285 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 100 ~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 124679999999999999999999999999999998874
No 445
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-14 Score=97.37 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=71.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+... .+..... ...+..+|.|.+
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~--------------~~~~~~~-~~~~~~~L~i~~ 68 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD--------------DLHKMIV-SEKGLHSLIFEV 68 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCC--------------SSSCEEE-ETTTEEEEEESS
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCC--------------CcEEEEE-cCCCeEEEEECC
Confidence 4677877788888999999999999998888999999987654211 1111111 112345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|...
T Consensus 69 v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~ 99 (100)
T 2kdg_A 69 VRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99 (100)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCcccCEEEEEEEEcCCCe-EEEEEEEEEEec
Confidence 9999999999999987554 577778877654
No 446
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=95.32 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=71.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. ...++... ...+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~-------------~~~~~~~~--~~~~~~~L~i~ 67 (99)
T 1u2h_A 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-------------DQRRFAEE--AEGGLCRLRIL 67 (99)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCC-------------BTTEEEEE--CGGGEEEEEES
T ss_pred CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCC-------------CCCEEEEE--CCCCEEEEEEc
Confidence 3568888888888899999999999999888899999998865421 11122211 12344589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 68 ~~~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~ 97 (99)
T 1u2h_A 68 AAERGDAGFYTCKAVNEYGA-RQCEARLEVR 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred cCCcCCCEEEEEEEEECCCc-eeEEEEEEEE
Confidence 99999999999999987544 4566677765
No 447
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.49 E-value=2.5e-13 Score=93.07 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=66.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+..++....+.+|+.+.|.|.+.+ +++.+.|+++|.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~--i~~~~~~~i~~~-----g~~~~L~I~~v~~~D~G~Y~ 76 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQP--LAASPDCEIIED-----GKKHILILHNCQLGMTGEVS 76 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEE--CCCBTTEEEEEE-----TTEEEEEECSCCGGGCEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEE--CcCCCCEEEEEE-----CCEEEEEECCCChhhCEEEE
Confidence 456666777888999999999999975 5578999999988 555555544321 12468999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFES 323 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~ 323 (386)
|.|.|. ..+..|.|.
T Consensus 77 C~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 77 FQAANT----KSAANLKVK 91 (93)
T ss_dssp EEETTE----EEEEEEEEE
T ss_pred EEECCC----cEEEEEEEE
Confidence 999874 456666664
No 448
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.49 E-value=2.8e-13 Score=96.02 Aligned_cols=98 Identities=23% Similarity=0.320 Sum_probs=74.0
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|+.++|.|.+.+.+.+.+.|++++..+.. +.++.... .....+|.|
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~--------------~~~~~~~~--~~~~~~L~i 73 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA--------------SERLSFPA--DGAEHGLLL 73 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEECCE--ETTEEEEEE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCC--------------CCcEEEEe--CCCEEEEEE
Confidence 45678888888888899999999999999888889999998765421 12222221 223458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|
T Consensus 74 ~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~P 107 (107)
T 3irg_B 74 TAALPTDAGVYVCRARNAAGE-AYAAAAVTVLEPP 107 (107)
T ss_dssp SSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred ccCCHHhCEEEEEEEEcCCCc-EEEEEEEEEEcCC
Confidence 999999999999999986544 4677888887664
No 449
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=94.82 Aligned_cols=96 Identities=25% Similarity=0.299 Sum_probs=73.5
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .+.++.... +.+|.|
T Consensus 5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~-------------~~~~~~~~~-----~~~L~i 66 (100)
T 2edj_A 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG-------------RDPRATIQE-----QGTLQI 66 (100)
T ss_dssp CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESS-------------SCSSCEECT-----TCCEEE
T ss_pred CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCC-------------CCCCEEEcC-----CCEEEE
Confidence 45678888888888899999999999999999999999998765421 112222221 227999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|
T Consensus 67 ~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~ 100 (100)
T 2edj_A 67 KNLRISDTGTYTCVATSSSGE-TSWSAVLDVTESG 100 (100)
T ss_dssp ESCCTTTCCEEEEEEECSSCC-CBCCEEEEEESCC
T ss_pred ccCCcccCEEEEEEEEcCCCC-EEEEEEEEEecCC
Confidence 999999999999999987554 3677788877653
No 450
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=98.42 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=71.9
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEec---CCCeeEEEeCCeeeeeec--CceeEEee-eeecCceeeeEEEEeecccCCC
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAY---PPPAIVWIKEDTQQVLTN--NQHYSISH-FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.+...+....+.+|++++|.|.+.|. |.|.|.|+|+... .+.. ..++.+.. +..........|.|.++...|+
T Consensus 14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 92 (118)
T 2edn_A 14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWL-ELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92 (118)
T ss_dssp SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTC-CCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEe-ccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence 34555677889999999999999875 7889999997421 1111 22333321 1112223468899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|+|+|.|..|..++.+.|.|..
T Consensus 93 G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 93 GYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp SCEEEEEECSSCEEEEEECCEEEC
T ss_pred EEEEEEEEEcCCcEEEEEEEEEEc
Confidence 999999999999999999998875
No 451
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.48 E-value=2.1e-13 Score=93.46 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=66.8
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..++.|...+.+..+.+|+.++|.|.+.+ +.+.+.|+|++..+. .+.++.+..+ ...++|.|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~--------------~~~~~~i~~~--g~~~~L~I~ 65 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA--------------ASPDCEIIED--GKKHILILH 65 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECC--------------CBTTEEEEEE--TTEEEEEEC
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECc--------------CCCCEEEEEE--CCEEEEEEC
Confidence 46788888889999999999999999975 447799999886542 1233333322 234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+++.+|+|.|+|.+.|. .....|.|..
T Consensus 66 ~v~~~D~G~Y~C~a~n~-----~~sa~L~V~~ 92 (93)
T 1waa_A 66 NCQLGMTGEVSFQAANT-----KSAANLKVKE 92 (93)
T ss_dssp SCCGGGCEEEEEEETTE-----EEEEEEEEEC
T ss_pred CCChhhCEEEEEEECCC-----cEEEEEEEEc
Confidence 99999999999998642 3455666653
No 452
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.48 E-value=8.2e-13 Score=105.24 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=109.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+...|....+.+|++|+|.|.+.+.....+.|||.........+.. ..... ....+|+....+.....++|.|.+++.
T Consensus 6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~-~~~~~Rfs~~~~~~~~~~sL~I~~~~~ 84 (210)
T 2eys_A 6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSEN-TKSNGRYTATLDADTKQSSLHITASQL 84 (210)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCS-EEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCC-CccCCCEEEEEcCCCCEEEEEEccCCc
Confidence 4455667789999999999999766556799999764332222221 11111 124678887766667888999999999
Q ss_pred CCCeEEEEEeEEcc---cc-eeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCee
Q psy8823 106 TDAGYYRCQVIIGI---NN-KISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNA 175 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~---~~-~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~ 175 (386)
+|+|.|.|.+.+.. .. .......|.|... |.+....+ ..+.++|.|.+.+..+. .+.+.+
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~------~~~~~tl~Cl~~gf~P~~~v~~~~---- 154 (210)
T 2eys_A 85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD------SKSSDKSVCLFTDFDSQTNVSQSK---- 154 (210)
T ss_dssp GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC------CSSSSCEEEEEESCCTTCCCCCCS----
T ss_pred ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC------CCCCceEEEEcccccCCcEecccc----
Confidence 99999999987531 11 1112345666532 22211111 12378999999887554 332211
Q ss_pred eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 176 ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 176 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
...........|.+..+...+.|.|.|.+.+..+
T Consensus 155 --~~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~ 188 (210)
T 2eys_A 155 --DSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 188 (210)
T ss_dssp --STTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred --CcceEccCchhcchhcccccccchhhccCCCceE
Confidence 1111222445788888888999999999887554
No 453
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-13 Score=95.63 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE---eeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
......+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..+. ....
T Consensus 30 ~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~ 108 (118)
T 2e7c_A 30 LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK-DTAT 108 (118)
T ss_dssp TSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCE-ECCE
T ss_pred cCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCe-EEEE
Confidence 34667899999999999999999999999999988753222111 1456999999999999999999999886 6677
Q ss_pred EEEEEEecc
Q psy8823 218 IAVEVEFAP 226 (386)
Q Consensus 218 ~~l~v~~~p 226 (386)
+.|.|..+|
T Consensus 109 ~~l~V~~~P 117 (118)
T 2e7c_A 109 IRIRVVEKA 117 (118)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 888887655
No 454
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.48 E-value=2.8e-13 Score=92.80 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=66.6
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +... ....|.|.++..+|+|.|+|
T Consensus 4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~--------------~~~~L~i~~v~~~d~G~Y~C 67 (91)
T 3bfo_A 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--LTHE--------------TKKLYMVPYVDLEHQGTYWC 67 (91)
T ss_dssp CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEE--CTTC--------------CSSEEEESSCCGGGCEEEEE
T ss_pred eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCee--CCcC--------------CCCeEEECCCCHHhCEEEEE
Confidence 4455556667788999999999999999999999999876 3222 23579999999999999999
Q ss_pred EEEcCCCcee-eEEEEEEEe
Q psy8823 306 RAANKLGTSE-KTVELFESI 324 (386)
Q Consensus 306 ~a~n~~g~~~-~~~~l~v~~ 324 (386)
.|.|..|... ..+.|.|.+
T Consensus 68 ~a~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 68 HVYNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp EEECSSCEEECCCEEEEEC-
T ss_pred EEEcCCCCEEeeeEEEEEeh
Confidence 9999999755 567777643
No 455
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=97.05 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=76.9
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++....+ ..+...|.|
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i 70 (110)
T 2dm2_A 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-------------KSDHYTIQRD-LDGTCSLHT 70 (110)
T ss_dssp CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-------------TCSSEEEEEC-TTCEEEEEE
T ss_pred CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-------------CCCeEEEEEC-CCcEEEEEE
Confidence 34678888888888899999999999999888899999998865421 1122333222 234458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.
T Consensus 71 ~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 71 TASTLDDDGNYTIMAANPQGR-ISCTGRLMVQAVNS 105 (110)
T ss_dssp SSCCTTTCSCCEEEEECTTCC-EEECCCEEEECCSC
T ss_pred CCCChhhCEEEEEEEEECCCe-EEEEEEEEEECCCC
Confidence 999999999999999987654 46777888877654
No 456
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.21 E-value=3.6e-15 Score=115.82 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
...|....+.+|++|+|.|.+.+.....+.|||.........+....+.......+|+....+...++++|.|.+++.+|
T Consensus 4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~D 83 (185)
T 3c6l_A 4 RQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGD 83 (185)
Confidence 33456677899999999999876555579999976432211111111111112355666654445567799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~ 181 (386)
+|.|.|.+.+. .........|.|... |.+....+ ..+.++|.|.+.| +|.++|.|..+.......+.
T Consensus 84 sG~Y~C~~~~~-~~~fg~gT~L~V~~~~~~~~P~V~~~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~~~~ 156 (185)
T 3c6l_A 84 SATYFCAASDN-RIFFGDGTQLVVKPNIQNPEPAVYQLKD------PRSQDSTLCLFTDFDSQINVPKTMESGTFITDKT 156 (185)
Confidence 99999998641 111112234555432 22221111 1227999999977 67889999876654422221
Q ss_pred eEE-eeeEEEECCCCCCCCe-EEEEE
Q psy8823 182 SIY-RGSILKIPQITKEDRG-TYYCV 205 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g-~y~C~ 205 (386)
... ..-.+.+..+..-|.| .+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~w~~~~~~~c~ 182 (185)
T 3c6l_A 157 VLDMKAMDSKSNGAIAWSNQTSFTCQ 182 (185)
Confidence 111 1122444444444444 67775
No 457
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.9e-14 Score=98.89 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.+.+.+.|++++..+... .+..... ...+..+|.|
T Consensus 6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--------------~~~~~~~-~~~~~~~L~i 70 (110)
T 2dm3_A 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD--------------SAHKMLV-RENGVHSLII 70 (110)
T ss_dssp CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC--------------SSEEEEE-CTTSCEEEEE
T ss_pred CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC--------------CceEEEE-ecCCeEEEEE
Confidence 456788988888889999999999999999898999999988654211 1111111 1123458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|..
T Consensus 71 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~ 106 (110)
T 2dm3_A 71 EPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAKESG 106 (110)
T ss_dssp SSCCGGGCSBBCEEEECSSCE-EEECCEEEEECCCCS
T ss_pred eeCCcccCEEEEEEEECCCCE-EEEEEEEEEeCCCCC
Confidence 999999999999999987544 577888888876643
No 458
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.47 E-value=3.3e-13 Score=94.84 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=68.9
Q ss_pred EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc--eeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ--HYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 228 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+...+....+.+|+.++|.|.+.+ |.+.+.|++++.. +.... ++.+... .....|.|.++..+|+|.|+|
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~--l~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C 81 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEE--IIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSV 81 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEE--CCCSTTCSEEEEEE-----TTEEEEEEEEECTTTCSEEEE
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEE--CCCCCceEEEEEEc-----CCEEEEEECCCCcccCEEEEE
Confidence 455566677889999999999977 7789999999988 54444 3343321 124689999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCC
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.| .+.++.|.|...|.++
T Consensus 82 ~a~n----~~~~~~l~V~~~p~p~ 101 (103)
T 1x44_A 82 MTTG----GQSSAKLSVDLKSGPS 101 (103)
T ss_dssp EETT----EEEEEEEEEECCCSCC
T ss_pred EECC----CcEEEEEEEeCCCCCC
Confidence 9988 5777888888766543
No 459
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.47 E-value=5.1e-13 Score=93.89 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=73.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.... .....+|.|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~--------------~~~~~~~~--~~~~~~L~i~ 69 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--------------SSKIHYTN--TSGVLTLEIL 69 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEEEEE--ETTEEEEEEC
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC--------------CCCEEEEE--CCCEEEEEEc
Confidence 3567888888888899999999999999999999999998865421 12222221 1234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|...
T Consensus 70 ~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 101 (103)
T 3qp3_A 70 DCHTDDSGTYRAVCTNYKGE-ASDYATLDVTGG 101 (103)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCCcccCEEEEEEEEeCCCc-EEEEEEEEEECC
Confidence 99999999999999987544 466777777643
No 460
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.47 E-value=1.8e-13 Score=95.71 Aligned_cols=83 Identities=14% Similarity=0.300 Sum_probs=65.1
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+.+|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 90 (100)
T 3caf_A 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90 (100)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEE--CCGGGSTTCCEE----EGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred EEEecCCCEEEEEEEccccCCCEEEEEECCEE--cccccccccEEE----ecCeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence 45677899999999999999999999999987 433222110000 012457999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
...++.|.|
T Consensus 91 ~~~~~~l~V 99 (100)
T 3caf_A 91 INHTYHLDV 99 (100)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 998888876
No 461
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=96.04 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~--~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKA--IRKSQKYDVVCE-----GTMAMLVIRGASLKDAGEYT 79 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCB--CCCSSSEEEEEE-----TTEEEEEESSCCTTTCSEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEE--ccCCCCEEEEEC-----CCEEEEEECCCCcccCEEEE
Confidence 455666667788899999999999987 7889999999988 544445444321 12567999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|.|.| ...++.|.|...|..+
T Consensus 80 C~a~n----~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 80 CEVEA----SKSTASLHVEEKASGP 100 (103)
T ss_dssp EECSS----CEEEEEEEECCCSSSS
T ss_pred EEEcc----CCcEEEEEEeCCCCCC
Confidence 99999 4677888887766544
No 462
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=92.17 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.++.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+... ....|.|.+
T Consensus 2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------------------------~~~~L~i~~ 56 (91)
T 3bfo_A 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------------------------TKKLYMVPY 56 (91)
T ss_dssp CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-------------------------CSSEEEESS
T ss_pred CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-------------------------CCCeEEECC
Confidence 3567888888888999999999999999899999999987543110 012799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
++.+|+|.|+|.+.|..+...+..+.|.|..
T Consensus 57 v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp CCGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred CCHHhCEEEEEEEEcCCCCEEeeeEEEEEeh
Confidence 9999999999999987776556667777753
No 463
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.46 E-value=4.6e-13 Score=95.05 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=72.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... .. +......+.++..... ...+.+|.|.+
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~----~~--~~~~~~~~~r~~~~~~-~~~~~~L~I~~ 77 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTL----YF--DDKKALRDNRIELVRA-SWHELSISVSD 77 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEE----EE--TTEECSCCTTEEEEEE-SSSEEEEEECS
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceE----EE--cCCcccccCcEEEeec-CCCcEEEEECC
Confidence 34667777888899999999999999988888899999765210 00 1111112334443322 22567999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
++.+|+|.|+|.+.+ .+..+..+.|.|..+|
T Consensus 78 v~~~D~G~Y~C~~~n--~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 78 VSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CCGGGCEEEEEEECS--SSCEEEEEEEEEECCC
T ss_pred CChhHCeEEEEEEEc--CCCcEEEEEEEEEcCC
Confidence 999999999999987 3455777888887665
No 464
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.46 E-value=3.5e-13 Score=95.67 Aligned_cols=99 Identities=27% Similarity=0.502 Sum_probs=65.3
Q ss_pred EEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEE
Q psy8823 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 127 ~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C 204 (386)
+.+.+..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|
T Consensus 3 ~~v~~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 81 (108)
T 3kvq_A 3 LTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81 (108)
T ss_dssp --------CCCBSC-CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred eeECccCCCceecC-CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence 44566667766654 4567889999999999999999999999999988765544333 34689999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEecce
Q psy8823 205 VAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
.+.|..+. ....+.|.|..+|.
T Consensus 82 ~a~n~~g~-~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 82 QACSVLGC-AKVEAFFIIEGAQE 103 (108)
T ss_dssp EEC----C-EEEEEEEEEEC---
T ss_pred EEEeCCCc-eEEEEEEEEeCCCc
Confidence 99999887 56678888877654
No 465
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.46 E-value=9.7e-13 Score=94.33 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+.|...|.+..+.+|++++|.|.+.+. |.+.|.|||+.... .....+......+ .+ .......+++|.|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~L~I 79 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMD----LASKAGKHLQLKE-TF--ERHSRVYTFEMQI 79 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCC----HHHHTTSSEEEEE-EE--ETTTTEEEEEEEE
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcc----cCCCCCceEEEcc-cc--ccccccceEEEEE
Confidence 3557778888889999999999999864 77899999964211 0000111111111 01 1111223569999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEec-CC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-PP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p 135 (386)
.+++.+|+|.|+|++.|.. +..+..+.|.|.+ ++
T Consensus 80 ~~v~~~DaG~Y~Cevsn~~-g~~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 80 IKAKDNFAGNYRCEVTYKD-KFDSCSFDLEVHESTG 114 (126)
T ss_dssp CSCCTTSCEEEEEEEECSS-CEEEECCEEEEECCCC
T ss_pred ccCCcccCEEEEEEEEeCC-CcEEEEEEEEEEecCC
Confidence 9999999999999999874 5678889999988 44
No 466
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=96.39 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=69.4
Q ss_pred cceEeeCCCc---ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPR---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+...+.. ..+.+|+.++|.|.+.+.|.+ +.|++++.. +....++.+... .....|.|.+++.+|+|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~--~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G 78 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQK--VEESELLVVKMD-----GRKHRLILPEAKVQDSG 78 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEE--CCCBTTBEEEEE-----TTEEEEEESSCCTTTCE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEE--CCCCCCEEEEeC-----CCEEEEEECCCChhhCE
Confidence 3444444444 577899999999999999988 999999987 544444433321 13568999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 302 SYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|+|.|.|..+ .+.|.|...|.++
T Consensus 79 ~Y~C~a~n~~~----~~~l~V~~~P~pp 102 (104)
T 2e6p_A 79 EFECRTEGVSA----FFGVTVQDPSGPS 102 (104)
T ss_dssp EEEEECSSCCC----CEEEEEECCCCSS
T ss_pred EEEEEECCceE----EEEEEEcCCCCCc
Confidence 99999999743 6777777776644
No 467
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=91.51 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=60.9
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+.+.+|+++.|.|.+.+ |.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|
T Consensus 5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~n---- 72 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGER--LASQGRVQLEQA-----GARQVLRVQGARSGDAGEYLCDAPQ---- 72 (84)
T ss_dssp CEEECTTSCEEEECCCSC-CSTTCEEEETTEE--CCCCSSEEEEEC-----SSCEEEEESSCSSTTCEEEEEECTT----
T ss_pred EEEEecCCCEEEEEEECC-CCcEEEEEECCEE--ccccccEEEeec-----CCeEEEEecCCCCcccEEEEEEECC----
Confidence 456778999999999955 8889999999998 666665554321 1346799999999999999999855
Q ss_pred eeeEEEEEEE
Q psy8823 314 SEKTVELFES 323 (386)
Q Consensus 314 ~~~~~~l~v~ 323 (386)
.+.++.|.|.
T Consensus 73 ~~~~a~l~V~ 82 (84)
T 2lu7_A 73 DSRIFLVSVE 82 (84)
T ss_dssp TCEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 4566777764
No 468
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=95.92 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=67.7
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....+.+|+.+.|.|.+.|.| |.+.|++++.. +....++.+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~--~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~~g 78 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQ--LAESNRTRI---------TGEEVEVQDSVPADSGLYACVTSSPSG 78 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-CEEEEEESSSB--CCCCSSEEE---------CSSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEE--CCCCCcEEE---------ECCEEEEccCCHHHCEEEEEEEEeCCc
Confidence 345678899999999999886 79999999977 444334332 246899999999999999999999999
Q ss_pred ceeeEEEEEEEecCC
Q psy8823 313 TSEKTVELFESIIPV 327 (386)
Q Consensus 313 ~~~~~~~l~v~~~p~ 327 (386)
.....+.|.|...|.
T Consensus 79 ~~~~~~~l~V~~~~~ 93 (99)
T 2cr3_A 79 SDTTYFSVNVSDALP 93 (99)
T ss_dssp EEEEEEEECBCSCCS
T ss_pred eEEEEEEEEEecCCC
Confidence 998888888876554
No 469
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=99.45 E-value=5.2e-12 Score=98.98 Aligned_cols=178 Identities=20% Similarity=0.318 Sum_probs=111.5
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....++.|+++.|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.+.+
T Consensus 6 eSG~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~s 85 (254)
T 4f9p_D 6 QSGAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSS 85 (254)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEcc
Confidence 344566899999999999987643 448899965544322221 11 1111111 2357888888888999999999
Q ss_pred cCCCCCeEEEEEeEEccccee-eeEEEEEEecC----C----------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKI-SAEVDLQVRRP----P----------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~----p----------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
++.+|++.|.|.-... ... -.-..++|... | ......+..+.+.+|+.++|.|.+..
T Consensus 86 L~~eDTAvYYCAr~~~--~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~ 163 (254)
T 4f9p_D 86 LTSDDSAVYFCARSDY--GAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQ 163 (254)
T ss_dssp CCGGGCEEEECEESSS--CCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESS
T ss_pred CCCCCCEEEEEEecCC--CCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccC
Confidence 9999999999953211 000 01123333210 1 11123356677899999999999865
Q ss_pred eCCCeEEEEEc--Cee---eC-CC-------CceEE-----eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 162 HPTPRISWRRE--NNA---IL-PT-------GGSIY-----RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 162 ~~~~~v~W~~~--~~~---~~-~~-------~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.-...+.||+. |+. +. .. ..+.. ...+|+|.+++.+|.+.|.|.-.+.
T Consensus 164 ~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~ 229 (254)
T 4f9p_D 164 SISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS 229 (254)
T ss_dssp CCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred cccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCC
Confidence 44456899873 221 10 00 01111 1347999999999999999976543
No 470
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.45 E-value=8.2e-13 Score=90.87 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=67.7
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+........ ....|.|.++..+|+|.|+|.+.|.
T Consensus 2 ~P~i~~-~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 80 (93)
T 1wit_A 2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECC-CCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred CCeEEc-CCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence 344433 345778999999999999999999999999999 76644322222 2467999999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy8823 210 VGKGTRRNIAVEV 222 (386)
Q Consensus 210 ~~~~~~~~~~l~v 222 (386)
.|. .+..+.|.|
T Consensus 81 ~G~-~~~~~~l~V 92 (93)
T 1wit_A 81 LGE-DEAIFEVIV 92 (93)
T ss_dssp TEE-EEEEEEEEE
T ss_pred CCe-EEEEEEEEE
Confidence 886 556666655
No 471
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.45 E-value=4.8e-13 Score=93.48 Aligned_cols=95 Identities=23% Similarity=0.372 Sum_probs=71.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++..... ....+|.|.+
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~------------~~~~~~~~~~--~~~~~L~i~~ 69 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQ------------EQGRFHIENT--DDLTTLIIMD 69 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTT------------GGGTEEEEEC--SSEEEEEESS
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecC------------CCCEEEEEec--CCEEEEEEee
Confidence 4677777777888999999999999999899999999987654210 1223333322 2356899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 70 v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~ 98 (100)
T 3irg_A 70 VQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98 (100)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred cCcccCEEEEEEEEeCCCc-EEEEEEEEEE
Confidence 9999999999999987544 5666667664
No 472
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.45 E-value=7.2e-13 Score=94.03 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=72.0
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
..+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++........ .++..... ......|.|.+++
T Consensus 4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~ 79 (108)
T 3m45_A 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISVSDVS 79 (108)
T ss_dssp ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE----SSSEEEEEECSCC
T ss_pred ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec----CCCcEEEEECCCC
Confidence 3445555566778888999999999999999899999998763111111 12222111 1146789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+|+|.|+|.|.| .|..+..+.|.|..+|
T Consensus 80 ~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 80 LSDEGQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp GGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred hhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 9999999999999 8888899999887654
No 473
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.45 E-value=7.2e-13 Score=100.53 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=76.2
Q ss_pred EEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe-----eeEEEECCCCCCCCeEEE
Q psy8823 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYY 203 (386)
Q Consensus 129 l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~ 203 (386)
+.+..+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+......... ...|.|.+++..|+|.|+
T Consensus 36 ~~v~~~P~~~~~-~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 114 (154)
T 1fhg_A 36 EKPHVKPYFTKT-ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114 (154)
T ss_dssp CCCCEEEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred ccCCCCCeEEcc-CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence 344445555543 34567899999999999999999999999999888665544332 358999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecceEeeC
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAPVITVP 231 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p~~~~~ 231 (386)
|.+.|..+. ....+.|.|..+|.+...
T Consensus 115 C~a~N~~G~-~~~~~~l~V~~~p~~~~~ 141 (154)
T 1fhg_A 115 CKAVNSLGE-ATCTAELLVETMGKEGEG 141 (154)
T ss_dssp EEEEETTEE-EEEEEEEEEECC------
T ss_pred EEEEECCCe-EEEEEEEEEeCcCcCCCC
Confidence 999999887 567888888887765543
No 474
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=97.48 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=74.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. .+.++....+ .+|.|.
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-------------~~~~~~~~~~-----~~L~i~ 67 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-------------QDSRIKQLEN-----GVLQIR 67 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-------------TSTTEEEEET-----TEEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-------------CCCeEEEccC-----CEEEEc
Confidence 4578888888888899999999999999888899999998865421 1222322221 279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|..++..
T Consensus 68 ~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~p 102 (118)
T 2eo9_A 68 YAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVP 102 (118)
T ss_dssp SCCGGGCCCEEEEEECSSCE-EEEECCEEEECCSCC
T ss_pred cCCcCCCEEEEEEEEcCCCc-EEEEEEEEEEeCCCC
Confidence 99999999999999987554 466777888876543
No 475
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.44 E-value=3.3e-12 Score=103.47 Aligned_cols=155 Identities=21% Similarity=0.331 Sum_probs=94.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---eCC---------CCceEEe------eeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---ILP---------TGGSIYR------GSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~~~---------~~~~~~~------~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+.+ ...+.|++... . +.. ..+.... ...|.|.+++.+|+
T Consensus 8 p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 87 (229)
T 1hxm_A 8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE 87 (229)
T ss_dssp CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred CCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHC
Confidence 4567789999999999997543 45799998531 1 100 1111111 24799999999999
Q ss_pred eEEEEEEecCCC------C-ceeeeEEEEEEe------cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCe
Q psy8823 200 GTYYCVAENGVG------K-GTRRNIAVEVEF------APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDT 264 (386)
Q Consensus 200 g~y~C~~~~~~~------~-~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~ 264 (386)
|.|.|.+.+... . .......|.|.. +|.+... +..++|.|.+.|. |.+ .+.|.++ .
T Consensus 88 g~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~--------~~~~~L~C~~~g~~P~~i~v~W~~~-~ 158 (229)
T 1hxm_A 88 GSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM--------KNGTNVACLVKEFYPKDIRINLVSS-K 158 (229)
T ss_dssp EEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE--------EETTEEEEEEESCBSSCCEEEEECS-S
T ss_pred eEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc--------CCCCeEEEEEEEEeCCCEEEEEecC-C
Confidence 999999987531 1 112234566653 3332221 1235899999875 554 8999999 5
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeec-ccCCCeEEEEEEEcCCCce
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITI-EKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~ 314 (386)
. +....... .. . .++.+.+... ..+|.|.|+|.|.|..+..
T Consensus 159 ~--~~~~~~~~-~~--~----~dg~y~~~~~~~~~~~~~ytC~V~h~~~~~ 200 (229)
T 1hxm_A 159 K--ITEFDPAI-VI--S----PSGKYNAVKLGKYEDSNSVTCSVQHDNKTV 200 (229)
T ss_dssp E--EEECCCEE-EE--C----TTSSEEEEEEEEETTTTTCEEEEEETTEEE
T ss_pred E--EecCccce-EE--C----CCCcEEEEECcccCCCCcEEEEEEeCCCCc
Confidence 5 32221111 10 1 1223333333 3478899999999997544
No 476
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=91.61 Aligned_cols=94 Identities=16% Similarity=0.320 Sum_probs=71.5
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. .+.++....+ ....+|.|.
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~--------------~~~~~~~~~~--~~~~~L~i~ 67 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT--------------QGGKYKLSED--KGGFFLEIH 67 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC--------------SSSSEEEEEE--TTEEEEEEC
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECc--------------CCCCEEEEEe--CCEEEEEEC
Confidence 457888888888899999999999999988889999999876542 1223333221 234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 68 ~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 97 (99)
T 3puc_A 68 KTDTSDSGLYTCTVKNSAGS-VSSSCKLTIK 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCcccCEEEEEEEEeCCCc-EeEEEEEEEE
Confidence 99999999999999986544 4666666664
No 477
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=93.18 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=69.8
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+... .... ..+..+|.|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~---------------~~~~----~~~~~~L~i 68 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---------------RSTC----EAGVAELHI 68 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC---------------CCEE----ETTEEEEEE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc---------------ceEe----eCCeEEEEE
Confidence 345788888888888999999999999999898999999988654211 0000 123458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 69 ~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V 98 (99)
T 2yr3_A 69 QDALPEDHGTYTCLAENALGQ-VSCSAWVTV 98 (99)
T ss_dssp CSCCTTCCBCEEEEEECSSCE-EEEECCEEE
T ss_pred CCCChhhCEEEEEEEEECCCe-EEEEEEEEE
Confidence 999999999999999977554 455666655
No 478
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.44 E-value=1.4e-12 Score=92.37 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=68.4
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeee----cCCCcce
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR----YDTASST 95 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 95 (386)
..|.|...|....+.+|++++|.|.+.+.|. +.|.|+|++.... .... ..++.+. .......
T Consensus 3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~ 71 (108)
T 3cx2_A 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL----SSKV-------GQHLQLHDSYDRASKVYL 71 (108)
T ss_dssp CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEG----GGGC-------BTTEEEEEEEETTTTEEE
T ss_pred CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccc----cccC-------CceEEEeeEEecccccce
Confidence 4567777888888999999999999998887 8899999762110 0000 1112111 1112245
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.+|.|.+++.+|+|.|+|.+.|..+ ..+..+.|.|.
T Consensus 72 ~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~L~V~ 107 (108)
T 3cx2_A 72 FELHITDAQPAFTGSYRCEVSTKDK-FDCSNFNLTVH 107 (108)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEEE
T ss_pred EEEEEecCCCccCEEEEEEEecCCC-ceEEEEEEEEe
Confidence 6899999999999999999997654 45677777774
No 479
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=98.93 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=67.4
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ..... ...........|.+.+++.+|+|
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~D~G 85 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM-LLPSGSLFFLRIVHGRKSRPDEG 85 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEE-ECTTSCEEESSCCCBTTBCSSCE
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeE-EecCCcEEEEEEEeCCCCcCcCE
Confidence 45777777777788899999999999999999999999999873221110 00000 00011111112233366899999
Q ss_pred EEEEEEEcCCCceee-EEEEEEE
Q psy8823 302 SYICRAANKLGTSEK-TVELFES 323 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~-~~~l~v~ 323 (386)
.|+|.|.|..|...+ .+.|.+.
T Consensus 86 ~Y~C~a~N~~G~~~s~~~~l~~~ 108 (117)
T 2v9t_A 86 VYVCVARNYLGEAVSHDASLEVA 108 (117)
T ss_dssp EEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEEEEEeCccceEeeeEEEEhh
Confidence 999999999998865 4555553
No 480
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.44 E-value=1.4e-12 Score=93.17 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=71.0
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeeeecCceeEEeeeeec---CceeeeEEEEeecc
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVLTNNQHYSISHFATA---DEFTDTTIRVITIE 296 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~ 296 (386)
...+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++++.. +.............. .......|.|.++.
T Consensus 7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 84 (112)
T 3so5_A 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEA--LQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84 (112)
T ss_dssp -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEE--CTTCEEEEEEETTGGGSSCEEEEEEEEECSCC
T ss_pred CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcc--cccccccceeeeeccCCCccccceEEEEeccc
Confidence 34567777777777889999999999999664 469999999987 433221111111100 11125789999999
Q ss_pred cCCCeEEEEEEEcCCCc-eeeEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~-~~~~~~l~v 322 (386)
.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 85 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 85 FTSEGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence 99999999999999998 456777765
No 481
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.44 E-value=1.1e-12 Score=102.76 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=93.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++|+|.|.+.+.....+.|||.........+............+|+....+.....++|.|.+++.+
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~ 82 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEI 82 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCc
Confidence 44456667799999999999998655567999996543322222222221122346788777666677889999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeCCC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPT-PRISWRRENNAILPT 179 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~ 179 (386)
|+|.|.|.+.............|.|... |.+... ......++|.|.+.+..+ ..+.|.++|..+...
T Consensus 83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~------~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~ 155 (200)
T 3rgv_A 83 DSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQL------RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD 155 (200)
T ss_dssp TCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEE------EESSSSSCEEEEEESCCTTCCCCCCSSTTCEECC
T ss_pred cCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEc------cCCCCCceEEEEcccccCCeEeEeccCCcEEeec
Confidence 9999999986321111122345666542 111110 112234789999977644 469999999876543
No 482
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.43 E-value=8.9e-13 Score=91.67 Aligned_cols=80 Identities=14% Similarity=0.301 Sum_probs=64.0
Q ss_pred CCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+....+.+|+.++|.|.+. +.|.+.+.|++++.. ....... ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~--~~~~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~n~ 84 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG--KLPSRAM----------DFNGILTIRNVQPSDAGTYVCTGSNM 84 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGB--CCCTTEE----------EETTEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCC--CCCceee----------cCCCEEEEeCCChhhCEEEEEEecCC
Confidence 3455788999999999998 688899999998644 2111111 13558999999999999999999999
Q ss_pred CCceeeEEEEEEE
Q psy8823 311 LGTSEKTVELFES 323 (386)
Q Consensus 311 ~g~~~~~~~l~v~ 323 (386)
.|....++.|.|.
T Consensus 85 ~g~~~~~~~l~V~ 97 (98)
T 1gl4_B 85 FAMDQGTATLHVQ 97 (98)
T ss_dssp SCEEEEEEEEEEC
T ss_pred CCccccEEEEEEe
Confidence 9999999888774
No 483
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.43 E-value=2.7e-13 Score=95.66 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=73.5
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+...|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.. +.++.... ...+.+|.
T Consensus 10 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~--------------~~~~~~~~--~~~~~~L~ 73 (106)
T 1nct_A 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--------------SARHQVTT--TKYKSTFE 73 (106)
T ss_dssp CSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTT--------------CSSEEEEE--CSSEEEEE
T ss_pred CCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCC--------------CCCEEEEE--CCCEEEEE
Confidence 345678888889999999999999999999999999999998865421 12232222 12356899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
|.+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 74 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 105 (106)
T 1nct_A 74 ISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 105 (106)
T ss_dssp ECCCCSSCCSEEEECCBCSSCB-CCEEEEEEEC
T ss_pred ECcCCchhCEEEEEEEEeCCCe-EEEEEEEEEE
Confidence 9999999999999999876554 4666777664
No 484
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.43 E-value=8.9e-13 Score=95.82 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=67.6
Q ss_pred cccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeee---ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVL---TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
...+.+|+.+.|.|.+.|.| .+.+.|++++..... ........ .........+.|.|.+++.+|+|.|+|.|.
T Consensus 17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ--SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEE--EETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccc--cCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 34677899999999999954 468999998874110 00111000 000111246689999999999999999999
Q ss_pred cCCCceeeEEEEEEEecCCC
Q psy8823 309 NKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 309 n~~g~~~~~~~l~v~~~p~~ 328 (386)
|..|....++.|.|...|..
T Consensus 95 n~~g~~~~~~~l~V~~~p~i 114 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHEKPFV 114 (122)
T ss_dssp CSSCEEEEEEEEEEEEEECC
T ss_pred cCCCceEEEEEEEEeccCeE
Confidence 99999999999999887764
No 485
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.8e-13 Score=93.45 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
.+.++.|...|.+..+.+|++++|.|.+.+. |.+.|+|||+...... ...+....... .+ .......+++
T Consensus 9 ~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~----~~~~~~~~~~~-~~--~~~~~~~~~~ 81 (118)
T 2edn_A 9 EEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELG----SKSGARFSFKE-SH--NSASNVYTVE 81 (118)
T ss_dssp CCCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCC----CSTTSSCEEEE-EE--CSSSCEEEEE
T ss_pred cCCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccC----CCCccEEEecc-cc--ccccccceEE
Confidence 3445667777888889999999999999864 6789999996421100 00011111110 00 0011123569
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
|.|.+++.+|+|.|+|++.+..+ ..+..+.|.|..+
T Consensus 82 L~I~~v~~~D~G~Y~Cevsn~~g-~~s~~~~L~V~~~ 117 (118)
T 2edn_A 82 LHIGKVVLGDRGYYRLEVKAKDT-CDSCGFNIDVEAP 117 (118)
T ss_dssp EEESSCCTTTCSCEEEEEECSSC-EEEEEECCEEECC
T ss_pred EEEeeCChhhCEEEEEEEEEcCC-cEEEEEEEEEEcC
Confidence 99999999999999999998755 5688888888764
No 486
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.8e-13 Score=93.59 Aligned_cols=95 Identities=21% Similarity=0.368 Sum_probs=71.9
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|++++|.|.+.+ +.+.+.|++++..+.. +.++....+ .....|.|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~--------------~~~~~~~~~--~~~~~L~I 67 (103)
T 2edf_A 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRK--------------SQKYDVVCE--GTMAMLVI 67 (103)
T ss_dssp CCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCC--------------SSSEEEEEE--TTEEEEEE
T ss_pred CCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccC--------------CCCEEEEEC--CCEEEEEE
Confidence 456788888888888999999999999986 6778999998865521 122332221 22458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.| .+..+.|.|..+|..
T Consensus 68 ~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 68 RGASLKDAGEYTCEVEA-----SKSTASLHVEEKASG 99 (103)
T ss_dssp SSCCTTTCSEEEEECSS-----CEEEEEEEECCCSSS
T ss_pred CCCCcccCEEEEEEEcc-----CCcEEEEEEeCCCCC
Confidence 99999999999999875 366778888877643
No 487
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.42 E-value=1.8e-12 Score=90.47 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred cceEeeCCCc-ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPR-LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~--i~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y 78 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQE--IRPSTKYIFEHK-----GCQRILFINNCQMTDDSEY 78 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCB--CCCBTTEEEEEE-----TTEEEEEEEEECTTTCCEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEE--CCCCCCEEEEec-----CCEEEEEEcCCCcCcCEEE
Confidence 4555555554 5678999999999998 78889999999988 544445444321 1245799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+|.| |....++.|.|..+|.
T Consensus 79 ~C~a----g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 79 YVTA----GDEKCSTELFVRSGPS 98 (100)
T ss_dssp EEEE----TTEEEEEEEEECCSCC
T ss_pred EEEE----CCceEEEEEEEecCCC
Confidence 9999 7788888998876653
No 488
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.42 E-value=2.5e-12 Score=89.68 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=69.3
Q ss_pred ccCCeeeeeccc-eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQE-QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~-~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.|...+.+ ..+.+|++++|.|.+. .+.+.+.|++++..+.. +.++.+.. ......|.|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~--------------~~~~~~~~--~~~~~~L~I 67 (100)
T 2yuv_A 5 SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRP--------------STKYIFEH--KGCQRILFI 67 (100)
T ss_dssp SSSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCC--------------BTTEEEEE--ETTEEEEEE
T ss_pred CCCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCC--------------CCCEEEEe--cCCEEEEEE
Confidence 357888877776 5688999999999998 68889999998876521 22333322 123448999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+ +..+..+.|.|..+|.
T Consensus 68 ~~~~~~D~G~Y~C~a-----g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 68 NNCQMTDDSEYYVTA-----GDEKCSTELFVRSGPS 98 (100)
T ss_dssp EEECTTTCCEEEEEE-----TTEEEEEEEEECCSCC
T ss_pred cCCCcCcCEEEEEEE-----CCceEEEEEEEecCCC
Confidence 999999999999998 3345667888887763
No 489
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.42 E-value=4.1e-13 Score=91.33 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=61.0
Q ss_pred cceEeeCCCc--ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPR--LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
||.+..+... ..+.+|+.+.|.|.+.+ |.+.+.|+++|.. +....++.+.... ....|.|.++..+|+|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~--i~~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~ 75 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQE--VEESDFVVLENEG-----PHRRLVLPATQPSDGGE 75 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSC--CCCCSSCEEEEET-----TEEEEEESSCCGGGCSE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEE--eeeeeeeeEEecC-----CeEEEEeCCCChhhcEE
Confidence 3344444333 34568999999999855 8889999999998 6555555543211 34579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEE
Q psy8823 303 YICRAANKLGTSEKTVELF 321 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~ 321 (386)
|+|.|.|. +.++.|.
T Consensus 76 Y~C~a~n~----~~~~~lt 90 (91)
T 2lvc_A 76 FQCVAGDE----CAYFTVT 90 (91)
T ss_dssp EEEECSSC----EEEEEEE
T ss_pred EEEEEcce----EEEEEEE
Confidence 99999664 4455543
No 490
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.42 E-value=4.8e-13 Score=93.99 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=67.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEecc--ceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS--RFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i 100 (386)
.++.|...+.+..+.+|++++|.|.+.+ +.+.+.|+|++..+.. +. ++.+..+ ....+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~--------------~~~~~~~~~~~--~~~~~L~I 68 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP--------------GPKSRYRIRVE--GKKHILII 68 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCC--------------STTCSEEEEEE--TTEEEEEE
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCC--------------CCceEEEEEEc--CCEEEEEE
Confidence 3444777778888999999999999976 6688999998865421 11 2233221 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.| .+..+.|.|..+|.
T Consensus 69 ~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 69 EGATKADAAEYSVMTTG-----GQSSAKLSVDLKSG 99 (103)
T ss_dssp EEECTTTCSEEEEEETT-----EEEEEEEEEECCCS
T ss_pred CCCCcccCEEEEEEECC-----CcEEEEEEEeCCCC
Confidence 99999999999999864 36667788877654
No 491
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=94.08 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=77.1
Q ss_pred eeeEEEEEEec-ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 215 RRNIAVEVEFA-PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 215 ~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
+..+.|.|... |.+...+....+.+|+.+.|.|.+.+. |.+.|++++.. +....++.+... .....|.|.
T Consensus 8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~L~I~ 78 (113)
T 2edh_A 8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHET--LRDGDRHSLRQD-----GARCELQIR 78 (113)
T ss_dssp CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSB--CCCSSSEEEEEE-----TTEEEEEEC
T ss_pred cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEE--CCCCCcEEEEEC-----CCEEEEEEC
Confidence 44556667644 467777777889999999999999664 68999999987 555555554321 124589999
Q ss_pred ecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
++..+|+|.|+|.| |....++.|.|...|.
T Consensus 79 ~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 79 GLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108 (113)
T ss_dssp SCCSTTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred CCChhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence 99999999999999 7788888998877664
No 492
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.42 E-value=4.3e-12 Score=97.53 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=104.1
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+.+.|+...|..|+++.|.|..+...+..+.|--.-. .. .. +...+...|.|.+++
T Consensus 3 f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~------------~~-~~---------~~g~~w~~l~l~~vs 60 (192)
T 1zxq_A 3 FEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN------------KI-LL---------DEQAQWKHYLVSNIS 60 (192)
T ss_dssp CCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE------------EE-EE---------EEETTEEEEEEEEEC
T ss_pred cEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC------------ce-EE---------cCCCCeEEEEEeccc
Confidence 356778888889999999999998643333344543110 00 00 112233479999998
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCe--EEEEEcCeeeCCCC-
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPR--ISWRRENNAILPTG- 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~- 180 (386)
|+|.|.|.+.-. +....+.+.|.|+.+|......+....+.+|+.++|.|.+.+ .|... +.|++++..+....
T Consensus 61 --~~g~~~C~~~c~-~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f 137 (192)
T 1zxq_A 61 --HDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF 137 (192)
T ss_dssp --SCEEEEEEEEET-TEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEEC
T ss_pred --cCCeeEEEEECC-CcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccc
Confidence 789999998743 345578899999998865543322235789999999999964 55544 89999887763211
Q ss_pred ---ce--EEeeeEEEECCCCCCCCe-EEEEEEecCC
Q psy8823 181 ---GS--IYRGSILKIPQITKEDRG-TYYCVAENGV 210 (386)
Q Consensus 181 ---~~--~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 210 (386)
.. ......+.+. ++++|.| .|+|+|.-..
T Consensus 138 ~~~~~~~~~~tv~~~~~-~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 138 GKAAPAPQEATATFNST-ADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp CSSTTCTTCEEEEEEEE-CCGGGGGCEEEEEEEEEC
T ss_pred ccccCcCcceEEEEEEe-cchhhCCceEEEEEEecC
Confidence 00 1111233344 4555666 9999998765
No 493
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=90.65 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=66.7
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
.+....+.+|+.+.|.|.+.+.| +.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..+. ....+.|
T Consensus 15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l 92 (95)
T 2ckn_A 15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSV 92 (95)
T ss_dssp BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE-EEEEEEE
T ss_pred CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc-EEEEEEE
Confidence 35567899999999999999887 799999999888766555556788999999999999999999998886 5555665
Q ss_pred EE
Q psy8823 221 EV 222 (386)
Q Consensus 221 ~v 222 (386)
.|
T Consensus 93 ~V 94 (95)
T 2ckn_A 93 NV 94 (95)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 494
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=94.76 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=71.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~--i~~~~r~~~~~~-----~~~~~L~I~~v~~~D~G~Y~ 81 (104)
T 2eny_A 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKT--VGSSSRFQATRQ-----GRKYILVVREAAPSDAGEVV 81 (104)
T ss_dssp CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSB--CSBCSSCEEEEE-----TTEEEEEECSCCTTTCSCEE
T ss_pred CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEE--CCCCCCEEEEEc-----CCEEEEEECCCCHHHCEEEE
Confidence 345556667788999999999999888754 8999999988 555555544321 13458999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|.|. ....++.|.|..+|..+
T Consensus 82 C~a~----~~~~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 82 FSVR----GLTSKASLIVRERSGPS 102 (104)
T ss_dssp EEET----TEEEEECEEEECCCSSC
T ss_pred EEEC----CeeEEEEEEEeCCCcCC
Confidence 9984 45678888888777544
No 495
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=99.41 E-value=4.8e-12 Score=100.02 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=100.4
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+....+.+|++|+|.|.+.+.....+.|||.........+........ ...+|+....+....+++|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~-~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~ 84 (200)
T 2nw2_A 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGL-EEKGRFSSFLSRSKGYSYLLLKELQMKDSAS 84 (200)
T ss_dssp CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEE-EEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCc-ccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence 566678999999999998765556799999765432222222222211 1267887766666778899999999999999
Q ss_pred EEEEeEEc--cc-ceeeeEEEEEEecCCeeecCCCceE-EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEee
Q psy8823 111 YRCQVIIG--IN-NKISAEVDLQVRRPPVISDNSTRSL-VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186 (386)
Q Consensus 111 Y~C~~~~~--~~-~~~~~~~~l~v~~~p~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 186 (386)
|.|.+.+. .. ........|.|...+.. ..+... .....+.++|.|.+.+..+. +.= .++. .........
T Consensus 85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~-~~v-~~~~---~~~~~~t~~ 157 (200)
T 2nw2_A 85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQ-TNV-SQSK---DSDVYITDK 157 (200)
T ss_dssp EEEEEC---CCCCCEECCCEEEEEECCCSS--CCCEEEEEEECC--CCEEEEEESCCTT-CCC-CCCS---SSSEEECCC
T ss_pred EEEEEEcCCcceeeeeCCCEEEEEecCccc--CCCeEEEcCCCCCCceEEEEeecccCC-cEe-eccc---ccceEecCc
Confidence 99998641 11 11112345666532100 001100 01123378999999887554 320 1111 111111233
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
..|.+......+.+.|.|...+...
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T 2nw2_A 158 CVLDMRSMDFKSNSAVAWSNKSDFA 182 (200)
T ss_dssp EEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred hhhhhhhcccccccceeccCCCceE
Confidence 4566666676777888998876544
No 496
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.41 E-value=7.7e-13 Score=91.40 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=65.8
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....+.+|+.+.|.|.+.+ .|.+.|++++.. +....++.. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~n~~g 75 (95)
T 4hwu_A 9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVH--LGPNNRTVL---------IGEYLQIKGATPRDSGLYACTAARTVD 75 (95)
T ss_dssp EEEEECTTSCEEEECCCCT--TCEEEEEETTEE--ECCCSSEEE---------ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred CcEEECCCCEEEEEEEeCC--CCEEEEEECCEE--CCCCceEEE---------eCCEEEECcCCcccCEEEEEEEccCCC
Confidence 3455778999999999876 579999999987 544444433 245799999999999999999999999
Q ss_pred ceeeEEEEEEEecC
Q psy8823 313 TSEKTVELFESIIP 326 (386)
Q Consensus 313 ~~~~~~~l~v~~~p 326 (386)
....++.|.|...+
T Consensus 76 ~~~~~~~l~V~~~~ 89 (95)
T 4hwu_A 76 SETWIFMVNVTDAA 89 (95)
T ss_dssp EEEEEEEEEECCC-
T ss_pred cEEEEEEEEEeCCc
Confidence 99999999886544
No 497
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=95.63 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=69.0
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+.++|.|.+.+.+ +.+.|++++..+.... .. ..++.+.. ......|.|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~-----~~-----~~~~~~~~--~~~~~~L~I 71 (101)
T 2edk_A 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTRED-----SF-----KARYRFKK--DGKRHILIF 71 (101)
T ss_dssp CCCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSC-----CS-----SCCCEEEE--CSSEEEEEC
T ss_pred ccCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCC-----Cc-----ceeEEEEE--CCCEEEEEE
Confidence 34567888888888899999999999999877 8899999987652110 00 00233322 233558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.+ .+....|.|..+|
T Consensus 72 ~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~P 101 (101)
T 2edk_A 72 SDVVQEDRGRYQVITNG-----GQCEAELIVEEKQ 101 (101)
T ss_dssp SSCCGGGCSBEEEECSS-----CEECCBEEEECCC
T ss_pred CCCChhhCEEEEEEEcC-----CcEEEEEEEeCCC
Confidence 99999999999999864 2445567766554
No 498
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=99.40 E-value=2.9e-12 Score=91.61 Aligned_cols=104 Identities=20% Similarity=0.379 Sum_probs=71.5
Q ss_pred ccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
|....+.+|++|+|.|.+.... ...+.|++.........+....+.......+|+....+...+.++|.|.+++.+|+|
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG 87 (113)
T 1zox_A 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAG 87 (113)
T ss_dssp CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCE
Confidence 4556689999999999997543 345999997653211112222222122345677776656677889999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 110 YYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.|.|.+.+.. ......+.|.|...|
T Consensus 88 ~Y~C~v~~~~-~~~~~~v~L~V~~~p 112 (113)
T 1zox_A 88 IYWCGITKGG-LDPMFKVTVNIGPVP 112 (113)
T ss_dssp EEEEEECCSS-SCCEEEEEEEEECC-
T ss_pred EEEEeeEcCC-CCccEEEEEEEEcCC
Confidence 9999998653 445677888887654
No 499
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.40 E-value=1.3e-12 Score=91.64 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=63.9
Q ss_pred eCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
..+..+.|.|.+.|.|.|.++|++++..+....... ...+.|.|.++..+|+|.|+|.+.|..|. ....+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-EeEEE
Confidence 357889999999999999999999999887654321 12345999999999999999999999997 66777
Q ss_pred EEEEEecc
Q psy8823 219 AVEVEFAP 226 (386)
Q Consensus 219 ~l~v~~~p 226 (386)
.|.|..+|
T Consensus 93 ~l~V~~~P 100 (103)
T 1wwb_X 93 SAHFMGWP 100 (103)
T ss_dssp EECCSCCC
T ss_pred EEEECCCC
Confidence 77776655
No 500
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.7e-13 Score=93.19 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=70.8
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
....++.|...+.+..+.+|++++|.|.+.+.+. +.+.|+|++..+.. +.++.+..+ ...++|
T Consensus 4 V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~--------------~~r~~~~~~--~~~~~L 67 (104)
T 2eny_A 4 GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--------------SSRFQATRQ--GRKYIL 67 (104)
T ss_dssp CCCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSB--------------CSSCEEEEE--TTEEEE
T ss_pred cccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCC--------------CCCEEEEEc--CCEEEE
Confidence 3445667877888889999999999999987664 47999999876521 223333222 234589
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.|.+++.+|+|.|+|.+. .......|.|..+|.
T Consensus 68 ~I~~v~~~D~G~Y~C~a~-----~~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 68 VVREAAPSDAGEVVFSVR-----GLTSKASLIVRERSG 100 (104)
T ss_dssp EECSCCTTTCSCEEEEET-----TEEEEECEEEECCCS
T ss_pred EECCCCHHHCEEEEEEEC-----CeeEEEEEEEeCCCc
Confidence 999999999999999873 235677888887764
Done!