RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8823
(386 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 232 bits (593), Expect = 2e-74
Identities = 57/305 (18%), Positives = 112/305 (36%), Gaps = 26/305 (8%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
R + + + +G + C V A+D + W + G L
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN------------GEKLSPN 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
R ++ ++ + TL + + DAG Y+C V + A V++++ + + N+
Sbjct: 49 QQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NA 106
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGSILKIPQITKED 198
EG+ + C P I W+ + ++ + + L+I I K D
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 199 RGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPP 255
GTY C ++I V V P + + + + L C + +P P
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ W K+ + N + H + D + + + ++K Y+C A NK G +
Sbjct: 227 TMSWTKDGEP--IENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 316 KTVEL 320
++ L
Sbjct: 282 ASIHL 286
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 174 bits (443), Expect = 3e-52
Identities = 62/302 (20%), Positives = 105/302 (34%), Gaps = 32/302 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
++ + +G + C+ + + W II R
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQG-------------EKIISTQR 50
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
++ + L + + DAG YRCQ A V L++ +
Sbjct: 51 VVVQKE--GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 107
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGT 201
+G+ ++ C P P +SW N + + + + L+I I K D G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 202 YYCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPPAIV 258
Y C G+ R+I V V P I++P+ + + C P PAI
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
W + +++ N+ Y + ++T + V I G Y+CRA NK G EK
Sbjct: 228 WFRNG--KLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 319 EL 320
L
Sbjct: 279 FL 280
Score = 116 bits (293), Expect = 2e-30
Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 15/186 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSI 188
++ S + +S G+ C A G P I W + + + S
Sbjct: 4 LLQVT-ISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH 248
L I ED G Y C A + G+ + +E+ D ++ C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
V + P PA+ W+ + + ++ +++ + ++++ I K G Y C
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYRCEGR 173
Query: 309 NKLGTS 314
+
Sbjct: 174 VEARGE 179
Score = 112 bits (283), Expect = 7e-29
Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 29/220 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+ L Q+ T + Q G E+ C P V W+ + +
Sbjct: 91 VVLEIYQK-LTFREVVSPQEFKQGEDAEVVCR---VSSSPAPAVSWLYHNE-------EV 139
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQV 131
+T S D+RFA+ + L + +I ++D G YRC+ + ++ + V
Sbjct: 140 TTIS-----DNRFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 132 RRPPVISDN-STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSI 188
PP IS + + G+ + C A G P P ISW R I +
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 249
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L + I D G Y C A N G+ + ++V
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQHHH 288
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 164 bits (416), Expect = 3e-48
Identities = 68/306 (22%), Positives = 117/306 (38%), Gaps = 41/306 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P +G + KC V + W K +R I
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR--------------EIRPGGN 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNST 142
+ + +T TL V + + DAG Y C N K S L V+ PP
Sbjct: 52 YKMTLV--ENTATLTVLKVTKGDAGQYTCYAS---NVAGKDSCSAQLGVQEPPRFIKKLE 106
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSILKIPQITKED 198
S +V + + + EC GG P ++ W ++ I + + ++L++ ++ ED
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPP 254
G Y C A N G + +++V+ PV P P G + LEC ++ PP
Sbjct: 167 SGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVH----LECELQGTPP 221
Query: 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
+ W K+ + L + + Y I E T+I ++ ++ G Y C+A+N +G+
Sbjct: 222 FQVSWHKDK--RELRSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 315 EKTVEL 320
+
Sbjct: 275 TCVGSI 280
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLII 80
+ P G V L+C +Q + W K +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHK--------------DKRELR 234
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVR 132
++ I + + ++ + ++ D G Y+C+ +G + + ++
Sbjct: 235 SGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVG---SYTCVGSITLK 283
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 165 bits (418), Expect = 8e-48
Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 33/302 (10%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS 94
+ G TVEL C+ + W ++ K+ + R R
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 95 -TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ L++K+++ D+ Y C+V ++ EV L V SD + +GQ +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSDTH-----LLQGQSL 114
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213
L + +P + R P G +I G L + Q+ +D GT+ C K
Sbjct: 115 TLTLESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK- 167
Query: 214 TRRNIAVEV-EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--------- 263
I + V F ++ + G+ +++ L VE +W + +
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227
Query: 264 -----TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
++V T+ + G+ K G + V
Sbjct: 228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287
Query: 319 EL 320
L
Sbjct: 288 NL 289
Score = 72.5 bits (177), Expect = 3e-14
Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 25/210 (11%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I++ S + +++ + + + L +V+ +W + +R ++
Sbjct: 172 IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231
Query: 76 S--SLIIRDSRFAIRY---DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ 130
+ ++ + TL Q +G + K+ EV+L
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLHQEVNLV 290
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190
V R L C G +P++ + K
Sbjct: 291 VMRAT--------------QLQKNLTCEVWGPTSPKLMLSLKLE-----NKEAKVSKREK 331
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAV 220
+ + G + C+ + NI V
Sbjct: 332 AVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 162 bits (411), Expect = 2e-47
Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 32/301 (10%)
Query: 38 IGGTVELKCSVQY-----AQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYD 90
+G +V L C +Q + W + + + G S R A R
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
+L + ++ D G Y C + S ++ L+V P + + ++
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGE 132
Query: 151 QPVQLECFA-GGHPTPRISWRRENNAILPT-------GGSIYRGSILKIPQITKEDRGTY 202
C + GG P +I+W + + T G++ S+ + ++ D
Sbjct: 133 PVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV 192
Query: 203 YCVAENGVGKGTRR-NIAVEVEFA-PVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVW 259
C E+ + + + + V + V Q + L C + P P W
Sbjct: 193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNW 252
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
L + + ++K + IC N LG + +
Sbjct: 253 STTMGP--LPPFAVAQ-----------GAQLLIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 320 L 320
+
Sbjct: 300 V 300
Score = 104 bits (259), Expect = 1e-25
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 19/201 (9%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
P + Q+ +C + I W + S + S
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG-------GMPNTSQVPGFLS 170
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI-IGINNKISAEVDLQVRRPPVISDNST 142
T + T ++ + D C+V V+L V PP +S +
Sbjct: 171 G------TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY 224
Query: 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
+ L C A +P P +W + ++ +G+ L I + K T
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL--PPFAVAQGAQLLIRPVDKPINTT 282
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
C N +G + + V+V
Sbjct: 283 LICNVTNALGAR-QAELTVQV 302
Score = 78.2 bits (192), Expect = 2e-16
Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 34/231 (14%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAI---------LPTGGSIYRG 186
+ + G V L C+ +++W R + P+ R
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 187 SI-------------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
L++ + ED G Y C+ +I + V P T
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 234 RLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
++ + C PP I W + T+ +S T T++ +
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS-----GTVTVTSLWI 180
Query: 293 ITIEKRQYG-SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
+ + G + C+ ++ + + + ++ +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 167 bits (425), Expect = 6e-47
Identities = 58/314 (18%), Positives = 116/314 (36%), Gaps = 36/314 (11%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ + + P+ + ++ + +G V +C + ++ V W K
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK--------------D 138
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR- 132
L+ D+ + + TL + ++ G Y C +G SA++ L
Sbjct: 139 GELLKDDANLQTSFI--HNVATLQILQTDQSHVGQYNCSASNPLG-TASSSAKLTLSEHE 195
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSI 188
PP D S+ ++ G+ +C G +I+W ++N I P G +
Sbjct: 196 VPPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LE 246
L + ++TK D G Y C A N GK + + V+ P + ++ D E
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYE 312
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C + P ++W K++ + + + +S + + + + G Y C
Sbjct: 313 CKIGGSPEIKVLWYKDE--TEIQESSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCE 365
Query: 307 AANKLGTSEKTVEL 320
A N G++ + L
Sbjct: 366 AHNAAGSASSSTSL 379
Score = 166 bits (423), Expect = 1e-46
Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 39/314 (12%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+ L+ + P +G + KC + W K +R +
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCH---VTGTAPIKITWAKDNR-----EIRP 240
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQ 130
+ + +T TL V + + DAG Y C + G K S L
Sbjct: 241 G---------GNYKMTLV--ENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLG 286
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----G 186
V+ PP S +V + + + EC GG P ++ W ++ I +
Sbjct: 287 VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
++L++ ++ ED G Y C A N G + +++V+ PV + D+ LE
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C ++ PP + W K+ + L + + Y I E T+I ++ ++ G Y C+
Sbjct: 406 CELQGTPPFQVSWHKDK--RELRSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCK 458
Query: 307 AANKLGTSEKTVEL 320
A+N +G+ +
Sbjct: 459 ASNDVGSDTCVGSI 472
Score = 150 bits (381), Expect = 8e-41
Identities = 63/306 (20%), Positives = 113/306 (36%), Gaps = 45/306 (14%)
Query: 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
I + +I +C + + + V+W K + I S+F
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK--------------DETEIQESSKFR 339
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTR 143
+ + S L + ++ D+G Y C+ N S+ L+V+ PPV
Sbjct: 340 MSFV--ESVAVLEMYNLSVEDSGDYTCEAH----NAAGSASSSTSLKVKEPPVFRKKP-H 392
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKED 198
+ +G V LEC G P ++SW + + L +G + + I + D
Sbjct: 393 PVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSAD 451
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP----KPRLGQALQYDMDLECHVEAYPP 254
G Y C A N VG ++ ++ P +G+ +Q L+ +E P
Sbjct: 452 IGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQ----LQATIEGAEP 506
Query: 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
++ W K D +++ + + IS+ T++ E G Y C+ N+ GT
Sbjct: 507 ISVAWFK-DKGEIVRESDNIWISY-----SENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560
Query: 315 EKTVEL 320
E L
Sbjct: 561 ECFATL 566
Score = 150 bits (380), Expect = 1e-40
Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 50/313 (15%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + IG + L+C V + + W K L
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEH-----TKLRS---------APA 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVR---RPPVIS 138
+ +++ ++ +L++ + +D G Y C+ N +++ L ++ PP +
Sbjct: 52 YKMQFK--NNVASLVINKVDHSDVGEYTCKA----ENSVGAVASSAVLVIKERKLPPSFA 105
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSILKIPQI 194
+ + + G PV EC G ++SW ++ + I+ + L+I Q
Sbjct: 106 R-KLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQT 164
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKP----RLGQALQYDMDLEC 247
+ G Y C A N +G + + + E P + LG++ +C
Sbjct: 165 DQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGT----FKC 219
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
HV P I W K++ + + +Y ++ T+ V+ + K G Y C A
Sbjct: 220 HVTGTAPIKITWAKDN--REIRPGGNYKMTL-----VENTATLTVLKVTKGDAGQYTCYA 272
Query: 308 ANKLGTSEKTVEL 320
+N G + +L
Sbjct: 273 SNVAGKDSCSAQL 285
Score = 111 bits (280), Expect = 4e-27
Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 28/205 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P G V L+C +Q + V W K + +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--------------DKRELRSGKK 430
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNST 142
+ I + + ++ + ++ D G Y+C+ +G + + ++ PP
Sbjct: 431 YKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKL- 484
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKE 197
+ G+ VQL+ G ++W ++ I+ +I+ + L+ +
Sbjct: 485 SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEV 222
+ G Y C +N G + V
Sbjct: 545 NAGKYTCQIKNEAGT-QECFATLSV 568
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 163 bits (414), Expect = 7e-47
Identities = 65/293 (22%), Positives = 100/293 (34%), Gaps = 41/293 (13%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + L C W+ + RF +
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIF-------------NEYPSYQDNRRFVSQETG-----N 158
Query: 98 LLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR-------RPPVISDNSTRSLVVS 148
L + ++++D G Y C V + + + L +R P I ++
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRGTYYCVAE 207
+G V+LECFA G+P P I WRR + + ++ IL+IP +ED G+Y CVAE
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQV 267
N GK + P + A++ + EC P P W+K
Sbjct: 279 NSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG--DP 335
Query: 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
L I T+ + + G Y C A NK G + EL
Sbjct: 336 LLTRDRIQIE---------QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 135 bits (342), Expect = 2e-36
Identities = 61/304 (20%), Positives = 88/304 (28%), Gaps = 58/304 (19%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
V+L C + P + W + I + D I
Sbjct: 23 EKKVKLSCE---VKGNPKPHIRWKLNG-----TDVDIGMDFRYSVVDGSLLIN------- 67
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
+ DAG Y+C +S E LQ + ++ V GQ + L
Sbjct: 68 -----NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 156 ECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
C +W L I ++ K D G Y CV N V
Sbjct: 123 LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTN 182
Query: 213 GTR---------RNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKE 262
RN V E+ P I V P A + + LEC P P I+W +
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Query: 263 DTQQVLTNNQHYS------ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
D + + + + I +F D GSY C A N G +
Sbjct: 243 DGKPIARKARRHKSNGILEIPNFQQEDA----------------GSYECVAENSRGKNVA 286
Query: 317 TVEL 320
+L
Sbjct: 287 KGQL 290
Score = 115 bits (290), Expect = 4e-29
Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 24/211 (11%)
Query: 134 PPVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSI 188
PV + + SE + V+L C G+P P I W+ + Y GS+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQYDM 243
L +D GTY C+A N G R ++ + R GQ +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV--- 121
Query: 244 DLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
L C + WI + +N+ + + + +EK G+
Sbjct: 122 -LLCGPPPHSGELSYAWIFNE-YPSYQDNRRFVSQE--------TGNLYIAKVEKSDVGN 171
Query: 303 YICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
Y C N + + I+ +
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Score = 112 bits (281), Expect = 6e-28
Identities = 47/200 (23%), Positives = 69/200 (34%), Gaps = 34/200 (17%)
Query: 19 TTAQRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPIST 74
+ P I E + + G TV+L+C A P ++W + D PI+
Sbjct: 199 VMGEYEPKIEVQFPETVPAEKGTTVKLECF---ALGNPVPTILWRRADGK------PIAR 249
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN---KISAEVDLQV 131
+ + L + + Q+ DAG Y C N K A+ L
Sbjct: 250 KARRHKSNG-------------ILEIPNFQQEDAGSYECVA----ENSRGKNVAKGQLTF 292
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKI 191
P + V+ + V EC A G P P W + + +L L I
Sbjct: 293 YAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNI 351
Query: 192 PQITKEDRGTYYCVAENGVG 211
+ D G Y CVAEN G
Sbjct: 352 TIVNLSDAGMYQCVAENKHG 371
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 160 bits (407), Expect = 8e-46
Identities = 57/314 (18%), Positives = 103/314 (32%), Gaps = 40/314 (12%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ E+ G +L C + A P+I W K + + D
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS-------GADPNADVTDFDR 153
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR----------R 133
R D + Y +V +D Y C ++ V+ +++
Sbjct: 154 RITAGPD--GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS 187
PV ++ ++ G + C G +P ++ + + G
Sbjct: 212 EPVPQ-YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDLE 246
L ED G Y C +NGVGK + ++ + V AP P+ + D+ +
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C V P P +VW + L+ + TD+ + + ++ G Y CR
Sbjct: 331 CKVTGLPAPNVVWSHNA--KPLSGGRA----------TVTDSGLVIKGVKNGDKGYYGCR 378
Query: 307 AANKLGTSEKTVEL 320
A N+ G +
Sbjct: 379 ATNEHGDKYFETLV 392
Score = 130 bits (327), Expect = 3e-34
Identities = 48/324 (14%), Positives = 88/324 (27%), Gaps = 54/324 (16%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
+ P + E + L+C ++ Q W K + ++
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-----SYNWQEHNAA 56
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ +D +L+ Q +D G+Y+C S + +
Sbjct: 57 LRKDE------------GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104
Query: 139 DNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGS---------- 187
T EG+P QL+C +P P I+W++ + P
Sbjct: 105 A-KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNL 163
Query: 188 -ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----------FAPVITVP----K 232
+ + D Y C A+N + E++ PV
Sbjct: 164 YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM 223
Query: 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
+ G + C + P + K + N I+ +
Sbjct: 224 AKAGDVTM----IYCMYGSNPMGYPNYFKNGKD--VNGNPEDRITRHNRTS---GKRLLF 274
Query: 293 ITIEKRQYGSYICRAANKLGTSEK 316
T G Y C N +G +K
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQK 298
Score = 122 bits (307), Expect = 2e-31
Identities = 43/222 (19%), Positives = 69/222 (31%), Gaps = 14/222 (6%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIY--- 184
L V + PV+ D ++ E P LEC G+ + SW+++ + +
Sbjct: 1 LPVDKYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL----GQALQ 240
L + D G Y C AE G + R I+ + G+ Q
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 119
Query: 241 YDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
L+C + AYP P I W K + + + V +
Sbjct: 120 ----LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 300 YGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
Y+C A N E + +E E +P
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Score = 118 bits (296), Expect = 6e-30
Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 21/196 (10%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTG 75
+ + P Y+S++ + G + C P + K +
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIYCM---YGSNPMGYPNYFKNGK------------ 251
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + I +S LL K D G Y C+V G+ + L V P
Sbjct: 252 --DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ +VV +GQ V + C G P P + W N L G + S L I +
Sbjct: 310 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVK 368
Query: 196 KEDRGTYYCVAENGVG 211
D+G Y C A N G
Sbjct: 369 NGDKGYYGCRATNEHG 384
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 159 bits (403), Expect = 4e-45
Identities = 68/311 (21%), Positives = 114/311 (36%), Gaps = 50/311 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ +G TV LKC V P + W K + L G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIG---DPMPTIHWQKNQQ-----DLNPIPG------ 167
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
DSR + + L + +Q D+G YRC + + E ++++ P +
Sbjct: 168 DSRVVV-----LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
Query: 142 T-----RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQI 194
+++ EG+ LEC G+P P +W R I S+ GS L I +
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-----LGQALQYDMDLECHV 249
T +D GTY CV + + V P P ++ EC V
Sbjct: 283 TDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNH-PSNLYAYESMDIE----FECAV 336
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
P P + W+K V+ + ++ I + +R++ + K G Y C A N
Sbjct: 337 SGKPVPTVNWMKNG--DVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAEN 386
Query: 310 KLGTSEKTVEL 320
+ G ++ + +L
Sbjct: 387 EAGNAQSSAQL 397
Score = 153 bits (389), Expect = 5e-43
Identities = 67/314 (21%), Positives = 110/314 (35%), Gaps = 36/314 (11%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
+R+ + + GG V L CS + + PVI W K L +
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG-----LILALG----- 66
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVI 137
D R + + +L + D G Y+C+ +G + + IS + V P
Sbjct: 67 --MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS----IYRGSILKIPQ 193
+ T S+ G V L+C G P P I W++ + P G + L+I +
Sbjct: 125 L-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-------YDMDLE 246
+ D G Y C A N T V + P + Q D LE
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ-LYFLQRPSNVIAIEGKDAVLE 242
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C V YPPP+ W++ + L + ++ + + + + + G+Y C
Sbjct: 243 CCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG---------GSNLLISNVTDDDSGTYTCV 293
Query: 307 AANKLGTSEKTVEL 320
K + EL
Sbjct: 294 VTYKNENISASAEL 307
Score = 114 bits (288), Expect = 8e-29
Identities = 44/238 (18%), Positives = 67/238 (28%), Gaps = 31/238 (13%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180
RR + V G V L C A P I W+++ +
Sbjct: 9 SSHHHHHHGGRRSLHFV-SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGM 67
Query: 181 GSIYR----GSI----LKIPQITKEDRGTYYCVAENGVGKGTR-RNIAVEVEFAPVITV- 230
+ GS+ + + K D G Y C A G R V V
Sbjct: 68 DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ 127
Query: 231 PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFT 286
+ +G + L+C V P P I W K + + +
Sbjct: 128 TESITAFMGD----TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--------LP 175
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFESIIPVCPPQTQPSELLPLRNV 343
+++ ++ G Y C A N T E+ I+ Q L NV
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV--RILSDPGLHRQLYFLQRPSNV 231
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 153 bits (387), Expect = 4e-45
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 9/192 (4%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS--WRRENNAILPTGGSIYRGSIL 189
+ P I S ++ PV L+C + W + N L
Sbjct: 1 QNEPRIV-TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNMEY 58
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+I + ED G Y+CV + N +EV+ AP IT K + D + C
Sbjct: 59 RINKPRAEDSGEYHCVYHFVSA--PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGSYICRAA 308
YP P +W K++ + S F ++ T + ++ ++ + G Y C A
Sbjct: 117 VGYPHPEWMWRKKENG--VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 309 NKLGTSEKTVEL 320
N +G++ + L
Sbjct: 175 NSIGSASVSTVL 186
Score = 108 bits (272), Expect = 2e-28
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 42/206 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI---WMKVDRNKVTEPLPISTGSSL 78
Q P I + I+D V L+C++ + + ++ W K ++
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGV-------ELTATRKN 52
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPV 136
S + + D+G Y C + A ++V+ P
Sbjct: 53 A--------------SNMEYRINKPRAEDSGEYHCVY----HFVSAPKANATIEVKAAPD 94
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---------GS 187
I+ RS +EGQ + C + G+P P WR++ N + + +
Sbjct: 95 IT-GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153
Query: 188 ILKIPQI-TKEDRGTYYCVAENGVGK 212
L I + ED G Y C A N +G
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIGS 179
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 154 bits (390), Expect = 2e-44
Identities = 58/311 (18%), Positives = 95/311 (30%), Gaps = 45/311 (14%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80
A P I E + G TV L+C + V W T + S L
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTL-YSDGSSSILST 55
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ + G YRC G SA + L V+ P +
Sbjct: 56 NN--------------------ATFQNTGTYRC-TEPGDPLGGSAAIHLYVKDPARPWNV 94
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKE 197
+ +VV E Q L C +S R L S I +
Sbjct: 95 LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFI 154
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKP----RLGQALQYDMDLECHV 249
Y C A G K +I ++V+ P +T+ G+A Q + C
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ----IVCSA 210
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
+ V+++ + ++ Q F T+ + ++ + G+Y C A+N
Sbjct: 211 SSVDVNFDVFLQHNNTKLAIPQQS----DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266
Query: 310 KLGTSEKTVEL 320
G ++
Sbjct: 267 VQGKHSTSMFF 277
Score = 105 bits (263), Expect = 4e-26
Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 32/229 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPIST 74
I+L + ++QE + L C + + V ++V
Sbjct: 81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR------------ 128
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR- 133
++R + + + S + + + + Y+C ++G +S + L+V++
Sbjct: 129 -GRPLMRHTNY-----SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV 182
Query: 134 ---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSI 183
PP ++ LV G+ Q+ C A + + NN L
Sbjct: 183 IPGPPALT-LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK 232
+ L + Q+ + G Y CVA N GK ++ V + +
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVVESAGNSHHH 289
Score = 100 bits (250), Expect = 3e-24
Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 17/200 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
PVI + LVV G V L C G + W + S SIL
Sbjct: 4 IPVIEPSVP-ELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLY-SDGSSSILSTNN 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHVEAY 252
T ++ GTY C G+ I + V+ + + D L C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
A V + + L + +YS S + + Q Y C A
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSP--------WHGFTIHRAKFIQSQDYQCSALMGGR 168
Query: 313 TSE-KTVELFESIIPVCPPQ 331
++ L + PP
Sbjct: 169 KVMSISIRLKVQKVIPGPPA 188
Score = 45.3 bits (107), Expect = 1e-05
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
L P ++ + E ++ G ++ CS ++++ + K+ P
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP--- 231
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDL 129
+ + TL + + AG Y C +N S +
Sbjct: 232 ----------QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA----SNVQGKHSTSMFF 277
Query: 130 QVRRPPVIS 138
+V S
Sbjct: 278 RVVESAGNS 286
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 152 bits (384), Expect = 4e-43
Identities = 57/329 (17%), Positives = 106/329 (32%), Gaps = 34/329 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
+ ++ IG V L CS V W K N + + I S +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGVS 73
Query: 81 RDSRFAIRY---DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
+ + R + + T+ + ++ D G Y C+ ++++L V P
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 138 S----DNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENN------AILPTGGSIYRG 186
R+ + + + C A G P +SW I G++
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDL 245
S ++ + + + C+ + + + ++ + V++ P +T+ LQ D+ L
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252
Query: 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C +A PP W + L T I G+YI
Sbjct: 253 TCKADANPPATEYHWTTLN--GSLPKGVEAQ----------NRTLFFKGPINYSLAGTYI 300
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQ 333
C A N +GT VE+ +
Sbjct: 301 CEATNPIGTRSGQVEVNITEAAALEHHHH 329
Score = 78.3 bits (192), Expect = 3e-16
Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 37/223 (16%)
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPR---ISWRRENNAILPT------ 179
Q+ R P S+ G V L C FA P+ + ++W++ N
Sbjct: 9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68
Query: 180 ----------------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ +++ ++ ED G Y C + + V
Sbjct: 69 SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 224 FAPVITVPKPRLGQALQYDMD-----LECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
P + + + D C PP + W +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ R + S C + ++++ L
Sbjct: 189 TVTVISRYRLVPSR-----EAHQQSLACIVNYHMDRFKESLTL 226
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 150 bits (381), Expect = 4e-43
Identities = 57/311 (18%), Positives = 93/311 (29%), Gaps = 45/311 (14%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80
A P I E + + G TV L+C + V W
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVS----NGSVEWDG-------------------- 36
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
D S TL ++ + G YRC + S + L V+ P +
Sbjct: 37 -PISPYWTLDPESPGSTLTTRNATFKNTGTYRC-TELEDPMAGSTTIHLYVKDPAHSWNL 94
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKE 197
+ + V EGQ L C +S RE + I +
Sbjct: 95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL 154
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRL----GQALQYDMDLECHV 249
D TY C + T I ++V P I + +L G+A Q + C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ----IVCSA 210
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
V +K ++ ++ + + ++ + G Y C A+N
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYK----KVRALSLNAVDFQDAGIYSCVASN 266
Query: 310 KLGTSEKTVEL 320
+GT T+
Sbjct: 267 DVGTRTATMNF 277
Score = 108 bits (272), Expect = 2e-27
Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 32/227 (14%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
I+L + + ++QE G L C + + M+
Sbjct: 81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMRE------------- 127
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR- 133
G ++R + + S +++ + D+ Y C+ ++ S + L+V R
Sbjct: 128 GGRQVLRKTVY-----FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182
Query: 134 ---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-------I 183
PP I LV G+ Q+ C A + + L +
Sbjct: 183 HPEPPQIK-LEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYY 241
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
+ L + + +D G Y CVA N VG + +V +
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVVESHHHHH 287
Score = 102 bits (256), Expect = 4e-25
Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 19/219 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
PVI + LVV G+ V L C + G + W + T GS L
Sbjct: 4 APVIEPSGP-ELVVEPGETVTLRCVSNG----SVEWDGPIS-PYWTLDPESPGSTLTTRN 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHVEAY 252
T ++ GTY C I + V+ + ++ + L C +
Sbjct: 58 ATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 253 PP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
++ ++E +QVL ++ + + +Y+C+
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSP---------WRGFIIRKAKVLDSNTYVCKTMVNG 167
Query: 312 GTSE-KTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349
S + L + + PPQ + +R A
Sbjct: 168 RESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206
Score = 47.3 bits (112), Expect = 4e-06
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
+L P I + ++ G ++ CS A+ + +K K+ PL
Sbjct: 175 IWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL-- 232
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDL 129
+ + L + + DAG Y C +N + +A ++
Sbjct: 233 -----------NSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA----SNDVGTRTATMNF 277
Query: 130 QVRRPPVISDN 140
QV +
Sbjct: 278 QVVESHHHHHH 288
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 153 bits (387), Expect = 5e-43
Identities = 67/308 (21%), Positives = 105/308 (34%), Gaps = 42/308 (13%)
Query: 25 PTISYISQEQIK-DIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRD 82
S ++ +K G V CS W+ N+ +P
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL---NEFPNFIPAD--------G 149
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV----------IIGINNKISAEVDLQVR 132
RF + L + + +D G Y C + +++S + +
Sbjct: 150 RRFVSQTTG-----NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ 204
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
P I GQ V LECFA G+P P+I WR+ + + T + +L I
Sbjct: 205 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQ 262
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252
+ ED GTY C AEN G+ + + P + D+ C
Sbjct: 263 NVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGK 321
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
P PA+ W+++ Q L + +S +R + G Y C A NK G
Sbjct: 322 PRPAVRWLRDG--QPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHG 370
Query: 313 TSEKTVEL 320
T + EL
Sbjct: 371 TVYASAEL 378
Score = 129 bits (327), Expect = 2e-34
Identities = 57/305 (18%), Positives = 82/305 (26%), Gaps = 60/305 (19%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
V L C + W L + S + I
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNG-----TELKMGPDSRYRLVAGDLVI----------- 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQ 154
++ DAG Y+C N +S E L+ S + ++EG V
Sbjct: 66 -SNPVKAKDAGSYQCVA----TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120
Query: 155 LECFA-GGHPTPRISWRRENNAILPTGGS----IYRGSILKIPQITKEDRGTYYCVAENG 209
C +P W L I + D G Y C A +
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 210 VGKGTRR----------NIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIV 258
+ T+ ++AP I P AL + LEC P P I
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 259 WIKED---TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
W K D T + L++ I + DE G+Y C A N G
Sbjct: 241 WRKLDGSQTSKWLSSEPLLHIQNVDFEDE----------------GTYECEAENIKGRDT 284
Query: 316 KTVEL 320
+
Sbjct: 285 YQGRI 289
Score = 112 bits (281), Expect = 5e-28
Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 22/205 (10%)
Query: 134 PPVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSI 188
PV + T S + V L C A +P W+ + S YR G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQYDM 243
+ + +D G+Y CVA N G R ++ F + + G +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM--- 120
Query: 244 DLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
C YP + W+ + + + +S T + + E G+
Sbjct: 121 -FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ-------TTGNLYIAKTEASDLGN 172
Query: 303 YICRAANKLGTSEKTVELFESIIPV 327
Y C A + + K+V S + +
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSL 197
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 147 bits (372), Expect = 7e-43
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 15/184 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDR 199
+G+ ++ C P P +SW N + + + + L+I I K D
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 200 GTYYCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPPA 256
G Y C G+ R+I V V P I++P+ + + C P PA
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
I W + +++ N+ Y + ++T + V I G Y+CRA NK G EK
Sbjct: 130 ISWFRNG--KLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 317 TVEL 320
L
Sbjct: 181 QAFL 184
Score = 116 bits (291), Expect = 4e-31
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 23/193 (11%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
T + Q G E+ C V + P + W+ + ++T S D+
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNE-------EVTTIS-----DN 49
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPVISD-NS 141
RFA+ + L + +I ++D G YRC+ + ++ + V PP IS
Sbjct: 50 RFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKEDR 199
+ + G+ + C A G P P ISW R I + L + I D
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG 164
Query: 200 GTYYCVAENGVGK 212
G Y C A N G+
Sbjct: 165 GPYVCRATNKAGE 177
Score = 37.5 bits (87), Expect = 0.003
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 27/119 (22%)
Query: 18 LTTAQRTPTISYI--SQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ P IS S + G + C P I W +
Sbjct: 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFR-------------- 134
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQV 131
LI + ++ ++ L V++I +D G Y C+ G + + LQV
Sbjct: 135 NGKLIEENEKYILKGSNT----ELTVRNIINSDGGPYVCRATNKAG---EDEKQAFLQV 186
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 155 bits (393), Expect = 1e-42
Identities = 47/307 (15%), Positives = 91/307 (29%), Gaps = 36/307 (11%)
Query: 38 IGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
+G + ++C + + W ++ L + + T
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENK-----ALEEGNYFEMSTYSTNR-----TMIRIL 290
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQL 155
V + D GYY C + S + + I+ NS+ + + +
Sbjct: 291 FAFVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+P R +W + + G + K G Y AEN +
Sbjct: 347 SVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FT 405
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK------EDTQQVLT 269
+ + + P + + + C + YP P+ W K T+++
Sbjct: 406 KMFTLNIRRKPQV-LAEAS-------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITE 457
Query: 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329
+ + + +T+ + K C A N LGTS +T+ L P
Sbjct: 458 GVWNRKANRKVFGQWVSSSTLNMSEAIKG--FLVKCCAYNSLGTSCETILL---NSPGPF 512
Query: 330 PQTQPSE 336
P Q
Sbjct: 513 PFIQDGG 519
Score = 138 bits (349), Expect = 1e-36
Identities = 53/361 (14%), Positives = 109/361 (30%), Gaps = 38/361 (10%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ ++ Y + D+ ++ L+ V + +W+ + +P
Sbjct: 40 LGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP------ 93
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R ++++ + ET AG Y I + + +R
Sbjct: 94 ------HFDLQNRGVV-----SMVILKMTETQAGEYLL-FIQSEATNYTILFTVSIRNTL 141
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + E Q L C + P P + W ++ + +
Sbjct: 142 LYTLRRP-YFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL--GQALQYDMDLECHVEAY- 252
+ C A N +G+ R +++ P T+P+ L G+ L + C
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVN 255
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GSYICRAAN 309
+ W E+ + L ++ +S + + T I + G Y C ++
Sbjct: 256 HGFGLTWELEN--KALEEGNYFEMSTY--STNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 310 KLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT---SWEPQRKQLNCS 366
S V + E ++ E+ +V F P +W RK C
Sbjct: 312 HPSQSA-LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 367 S 367
Sbjct: 371 Q 371
Score = 122 bits (306), Expect = 9e-31
Identities = 37/256 (14%), Positives = 76/256 (29%), Gaps = 36/256 (14%)
Query: 102 DIQETDAGYYRCQVIIGINNKISAE----------------VDLQVRRPPVISDNSTRSL 145
+ D +C +I NN S L+ + + + ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTY 202
V + L+ W +++++ + I ++T+ G Y
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262
++ T V + + T+ +P + ++ L C E+ P P + W+
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176
Query: 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322
D+Q + + + C A N+LG + LF
Sbjct: 177 DSQGESCKE-----------ESPAVVKKEEKVLHELFGTDIRCCARNELG--RECTRLFT 223
Query: 323 SIIPVCPPQTQPSELL 338
+ P T P L
Sbjct: 224 IDLNQTPQTTLPQLFL 239
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 157 bits (399), Expect = 1e-42
Identities = 67/313 (21%), Positives = 105/313 (33%), Gaps = 32/313 (10%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ L P I QE+ + G +V LKC P I W + I+
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWELDGK-------KIAN 472
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR 132
+ L + + D G Y+C +G L V
Sbjct: 473 NDRYQVGQ----YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG---VAEHSAKLNVY 525
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILK 190
P I + G+ + + C G+P I W R +N LP ++ L
Sbjct: 526 GLPYIR--QMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNGTLI 582
Query: 191 IPQITK-EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM-DLECH 248
I + + D+ TY CVA+N G R ++ V+V P I G A L C
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 249 VEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
V P I W + Q ++ + + S + + + +E G++ C A
Sbjct: 643 VPGGDLPLNIDWTLDG--QAISEDLGITTSRVGR----RGSVLTIEAVEASHAGNFTCHA 696
Query: 308 ANKLGTSEKTVEL 320
N G + T L
Sbjct: 697 RNLAGHQQFTTPL 709
Score = 154 bits (390), Expect = 2e-41
Identities = 59/289 (20%), Positives = 99/289 (34%), Gaps = 31/289 (10%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T+ + C V ++W + +R LPI + + + + TL
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNR-----ALPI---------NRKQKVFPN-----GTL 581
Query: 99 LVKDIQ-ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
++++++ +D Y C +++QV P I + GQ + L C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 158 FAGGHPTP-RISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYYCVAENGVG 211
G P I W + AI G GS+L I + G + C A N G
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 212 KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN 271
+ V P + A D +EC + +P P + W K
Sbjct: 702 HQQ-FTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760
Query: 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + T+ V I+K G Y+C A N +G+ V +
Sbjct: 761 DLKKSDNI----RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 153 bits (387), Expect = 6e-41
Identities = 53/342 (15%), Positives = 91/342 (26%), Gaps = 56/342 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ G + +KC + V W +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE-----ENYFPGAEY---- 189
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDA-GYYRCQVI--IGINNKISAEVDLQV------- 131
D ++ + + L ++++ D Y+C+ + ++SA V
Sbjct: 190 DGKYLV-----LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY------R 185
P V+S S + L C A G+P P W + +
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV 304
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
L I ED G Y CV N VG + V + P
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF 363
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C P + W+K+ + + + I D+ G Y C
Sbjct: 364 TCQYTGNPIKTVSWMKDG-KAIGHSESVLRIESVKKEDK----------------GMYQC 406
Query: 306 RAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAV 347
N ++E + EL + P P + M
Sbjct: 407 FVRNDRESAEASAEL--KLGGRFDP---PVIRQAFQEETMEP 443
Score = 148 bits (376), Expect = 2e-39
Identities = 71/335 (21%), Positives = 120/335 (35%), Gaps = 66/335 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q D G C + WMK + + S
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGK-----AIGHSES-------- 389
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI-----SAEVDLQVRRPPVIS 138
L ++ +++ D G Y+C V N SAE+ L R P +
Sbjct: 390 -------------VLRIESVKKEDKGMYQCFVR----NDRESAEASAELKLGGRFDPPVI 432
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---------GSIYRGSIL 189
+ + + G V L+C AGG+PTP ISW + I + S L
Sbjct: 433 RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYL 492
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR---LGQALQYDMDLE 246
I + D G Y C+A++ VG + + V P I + + G+ L +
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGV-AEHSAKLNVYGLPYIRQMEKKAIVAGETLI----VT 547
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGSYIC 305
C V YP +IVW +++ + L N+ + F + T+ + +E+ +Y C
Sbjct: 548 CPVAGYPIDSIVWERDN--RALPINRKQKV--------FPNGTLIIENVERNSDQATYTC 597
Query: 306 RAANKLGTSEK-TVELFESIIPVCPPQTQPSELLP 339
A N+ G S + ++E+ ++P P
Sbjct: 598 VAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQ 632
Score = 126 bits (317), Expect = 9e-32
Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 31/276 (11%)
Query: 98 LLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
+ + + + + +I + ++A ++ PV T + S ++E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 157 CFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDR------GTYYCVAE 207
C A G+P P I W R + + + + L P ED Y C+A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 208 NGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQALQYDMDLECHVEAY---PPPAIVWI 260
N G R++ V A G + ++C + ++ + W
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV----IKCLIPSFVADFVEVVSWH 176
Query: 261 KEDTQQVLTNNQHYSISHFATAD---EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
++ ++ Y + + + Y SY CR ++L +
Sbjct: 177 TDE-EENYFPGAEYDGKYLVLPSGELHIREVG------PEDGYKSYQCRTKHRLTGETRL 229
Query: 318 VELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP 353
++ P + +++ L +M
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSST 265
Score = 110 bits (276), Expect = 2e-26
Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 31/222 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPIS 73
+ + I + +E +G + L CSV D P + W +
Sbjct: 611 LEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP-GGDLPLNIDWTLDGQ---------- 659
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQV 131
I D + L ++ ++ + AG + C G L V
Sbjct: 660 ----AISEDLGITTSRVGRRGS-VLTIEAVEASHAGNFTCHARNLAG---HQQFTTPLNV 711
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG----- 186
PP T ++G ++EC A G P P+++W++ + +
Sbjct: 712 YVPPRWILEPT-DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Query: 187 --SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
L + I K + G Y C A NG+G G I + V+
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 150 bits (381), Expect = 7e-42
Identities = 62/313 (19%), Positives = 106/313 (33%), Gaps = 45/313 (14%)
Query: 26 TISYISQEQIKDI----GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLII 80
+E + + G + L+C+ PVI WM + I
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS-------------SSMEPIT 160
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDA-GYYRCQV--IIGINNKISAEVDLQVRRPPVI 137
+D R + L ++ D Y C + L+V +
Sbjct: 161 QDKRVSQ-----GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 138 SD---------NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGS 187
++ + S +V G + LEC A G PTP I+W ++ +
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
L+I +++ED G Y+C+A N +G R I+V V+ AP L A D L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVC 334
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
P P + W+ + + + + + + E TI + Y C
Sbjct: 335 RANGNPKPTVQWMV-NGEPLQSAPPNPNR-------EVAGDTIIFRDTQISSRAVYQCNT 386
Query: 308 ANKLGTSEKTVEL 320
+N+ G +
Sbjct: 387 SNEHGYLLANAFV 399
Score = 136 bits (345), Expect = 9e-37
Identities = 61/317 (19%), Positives = 108/317 (34%), Gaps = 60/317 (18%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAI 87
+++ I D + ++C A+ P W + I+ D R ++
Sbjct: 24 AKDHIVDPRDNILIECE---AKGNPAPSFHWTRNS-----RFFNIAK-------DPRVSM 68
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTR 143
R + + E G Y+C NK +S + LQV + P+ +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFA----RNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKED-R 199
+VV EG P+ L+C G P+P I W + + S L + +D +
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQ 184
Query: 200 GTYYCVAENGVGKGTRRNIAVEV---------EFAPVITVPKPR-------LGQALQYDM 243
Y C A ++ + E P P+ G L
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL--- 241
Query: 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
LEC P P I W K+ + ++ + + +R+ + + G Y
Sbjct: 242 -LECIASGVPTPDIAWYKKG-GDLPSDKAKFENF---------NKALRITNVSEEDSGEY 290
Query: 304 ICRAANKLGTSEKTVEL 320
C A+NK+G+ T+ +
Sbjct: 291 FCLASNKMGSIRHTISV 307
Score = 119 bits (301), Expect = 1e-30
Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 36/231 (15%)
Query: 123 ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182
+ + ++ +PP I+ S + +V + +EC A G+P P W R +
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 183 IYR----GSILKIPQIT----KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP- 233
L I + +E G Y C A N G I ++V +P+
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 234 ----RLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS-----HFATAD 283
+ G L L+C+ P P I W+ + +T ++ S +F+
Sbjct: 125 PVVVQEGAPLT----LQCNPPPGLPSPVIFWMSSS-MEPITQDKRVSQGHNGDLYFSNVM 179
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
D Y C A + + F + +
Sbjct: 180 L-QDMQ-----------TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAER 218
Score = 40.2 bits (94), Expect = 0.001
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 30/113 (26%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P + I G L C A P V WM EPL + +
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCR---ANGNPKPTVQWMVNG-----EPLQSAPPNPNREV 364
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
T++ +D Q + Y+C N+ + A + V
Sbjct: 365 AGD------------TIIFRDTQISSRAVYQCNTS----NEHGYLLANAFVSV 401
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 152 bits (384), Expect = 2e-41
Identities = 49/343 (14%), Positives = 95/343 (27%), Gaps = 41/343 (11%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPL 70
F L + P +S + G + C+++ W + +
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYSTWKRENS-----QT 253
Query: 71 PISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ 130
+ + + + TL + + D+G + C + L+
Sbjct: 254 KLQE------KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTTTLE 306
Query: 131 VRRPPVISDNSTRS--LVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTG------- 180
V I+ + + V++G+ V L P P W N
Sbjct: 307 VVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE 366
Query: 181 --GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQA 238
+I S L + ++ + GTY + N V V P I RL
Sbjct: 367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEILT-YDRLVNG 424
Query: 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQV-----LTNNQHYSISHFATADEFTDTTIRVI 293
+ L+C +P P I W + + +++ +
Sbjct: 425 M-----LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 294 TIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + G+ C+A N +G + Q P
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN--KEQIHPHH 520
Score = 145 bits (366), Expect = 5e-39
Identities = 49/320 (15%), Positives = 102/320 (31%), Gaps = 41/320 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+ + + + ++C + + +K + K +
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGCQGK------------PL 156
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQET-DAGYYRCQVIIGINNKISAEVDLQVR----RP 134
+D RF +++K ++ C V + +S + L+VR
Sbjct: 157 PKDLRF-----IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG---------GSIY 184
PV+S S S ++ EG+ + C + +W+REN+ +
Sbjct: 212 PVVS-VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDM 243
R + L I D G + C A N G +EV I + P +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 244 D--LECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
+ L EA+P P WI + + T+ ++ + + + ++ +
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMN--RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 301 GSYICRAANKLGTSEKTVEL 320
G+Y +N + +
Sbjct: 388 GTYTFLVSNSDVNAAIAFNV 407
Score = 134 bits (339), Expect = 3e-35
Identities = 48/308 (15%), Positives = 92/308 (29%), Gaps = 51/308 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+I + I +G + L C+ V W ++ E
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNEN--------------- 77
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ + + T+ G Y C + +S + + VR P + RS
Sbjct: 78 ---------KQNEWITEKAEATNTGKYTCTN----KHGLSNSIYVFVRDPAKLFLVD-RS 123
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGT 201
L E + C S + LP + I+ R
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRL----GQALQYDMDLECHVEAYP 253
+C + ++V + PV++V K G+ + C ++
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT----VTCTIKDVS 239
Query: 254 PPAIV-WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
W +E++Q + Y+ H + T+ + + G ++C A N G
Sbjct: 240 SSVYSTWKRENSQ--TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
Query: 313 TSEKTVEL 320
++ T L
Sbjct: 298 SANVTTTL 305
Score = 105 bits (263), Expect = 5e-25
Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 35/239 (14%)
Query: 107 DAGYYRCQVIIGINNKI---SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP 163
A + C +++ + + V PP I + L+V G ++L C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPGF- 63
Query: 164 TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ W E + + + + + G Y C ++G+ +I V V
Sbjct: 64 ---VKWTFEILDE----TNENKQNEWITEKAEATNTGKYTCTNKHGLSN----SIYVFVR 112
Query: 224 FAPVITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ + + D + C + P +K + L + +
Sbjct: 113 DPAKLFLVDRSLYGKEDN----DTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDP- 166
Query: 280 ATADEFTDTTIRVITIEK-RQYGSYICRAANKLGTSEK-TVELFESIIPVCPPQTQPSE 336
I + ++++ C + + L P S+
Sbjct: 167 -------KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK 218
Score = 45.8 bits (108), Expect = 2e-05
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 35/146 (23%)
Query: 197 EDRGTYYCV----AENGVGKGTRRNIAVEVEFAPVITVPKP----RLGQALQYDMDLECH 248
+ CV G ++ +++ P I K R+G ++ L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGS-SQPSVSPGEPSPPSIHPGKSDLIVRVGDEIR----LLCT 59
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ + W E + N Q+ + + G Y C
Sbjct: 60 DPGF----VKWTFEILDETNENKQNEWITEKAEATNT----------------GKYTCTN 99
Query: 308 ANKLGTSEKTVELFESIIPVCPPQTQ 333
+ L S V + + ++
Sbjct: 100 KHGLSNSI-YVFVRDPAKLFLVDRSL 124
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 152 bits (384), Expect = 5e-41
Identities = 57/340 (16%), Positives = 91/340 (26%), Gaps = 53/340 (15%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ L + G + L C W +
Sbjct: 195 VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT-------FQQST 247
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRR- 133
L I + I ++G Y CQ + + V
Sbjct: 248 QELFIPN--------------------ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILK 190
PP S S V + V L C T + W NN LP + L
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLSNDNRTLT 345
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHV 249
+ +T+ D G Y C +N + + + V + P P ++ L CH
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
+ PP W+ + + + Q IS+ + G Y C+A N
Sbjct: 406 ASNPPAQYSWLIDG--NIQQHTQELFISNITEKNS----------------GLYTCQANN 447
Query: 310 KLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349
+T ++ P + S AV F
Sbjct: 448 SASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487
Score = 148 bits (374), Expect = 1e-39
Identities = 62/324 (19%), Positives = 104/324 (32%), Gaps = 41/324 (12%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I + P I+ + ++D V L C + Q+ +W ++ LP+S
Sbjct: 282 ITVYAEPPKPFITSNNSNPVED-EDAVALTCEPE-IQNTTYLWWVNNQ-----SLPVSP- 333
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R ++ TL + + D G Y C + ++ S V L V P
Sbjct: 334 ------------RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP 381
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
S G + L C A +P + SW + G L I IT
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-------GNIQQHTQELFISNIT 434
Query: 196 KEDRGTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252
+++ G Y C A N +R I V E + + C EA
Sbjct: 435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ 494
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+W Q L + +S+ + T+ + + + +Y+C N +
Sbjct: 495 NTT-YLWWVNG--QSLPVSPRLQLSN-------GNRTLTLFNVTRNDARAYVCGIQNSVS 544
Query: 313 TSE-KTVELFESIIPVCPPQTQPS 335
+ V L P P + P
Sbjct: 545 ANRSDPVTLDVLYGPDTPIISPPD 568
Score = 146 bits (370), Expect = 4e-39
Identities = 59/320 (18%), Positives = 101/320 (31%), Gaps = 40/320 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+ + + + V C + QD +W + + LP+S
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWVNN-----QSLPVSP----- 155
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD 139
R ++ TL + ++ D Y+C+ ++ + S V L V P
Sbjct: 156 --------RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDR 199
S + G+ + L C A +P + SW T L IP IT +
Sbjct: 208 ISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------ELFIPNITVNNS 260
Query: 200 GTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256
G+Y C A N R I V E + + L C E
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT- 319
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE- 315
+W + Q L + +S+ + T+ ++++ + G Y C N+L
Sbjct: 320 YLWWVNN--QSLPVSPRLQLSND-------NRTLTLLSVTRNDVGPYECGIQNELSVDHS 370
Query: 316 KTVELFESIIPVCPPQTQPS 335
V L P P +
Sbjct: 371 DPVILNVLYGPDDPTISPSY 390
Score = 145 bits (368), Expect = 8e-39
Identities = 55/310 (17%), Positives = 94/310 (30%), Gaps = 26/310 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V L + W K +R + + + +L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR-RPPVISDNSTRSLVVSEGQPVQLEC 157
L+++I + D G+Y VI A +V P S +S S V + V C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGKGT 214
+ W NN LP + L + +T+ D +Y C +N V
Sbjct: 134 EPETQDATYLWWV--NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR 191
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYD-MDLECHVEAYPPPAIVWIKEDTQQVLTNNQH 273
++ + V + P P + ++L CH + PP W + Q
Sbjct: 192 SDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG--TFQQSTQE 249
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII-PVCPPQT 332
I + + GSY C+A N +T ++ P
Sbjct: 250 LFIPNITVNNS----------------GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI 293
Query: 333 QPSELLPLRN 342
+ P+ +
Sbjct: 294 TSNNSNPVED 303
Score = 145 bits (366), Expect = 2e-38
Identities = 52/320 (16%), Positives = 82/320 (25%), Gaps = 71/320 (22%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ L + G + L C + W+
Sbjct: 373 VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGN-------IQQH 424
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
L I +I E ++G Y CQ NN S +
Sbjct: 425 TQELFI--------------------SNITEKNSGLYTCQA----NNSASGHSRTTVKTI 460
Query: 132 R---RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---R 185
P S +S S V + V C T + W N LP +
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQLSNG 518
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQ 240
L + +T+ D Y C +N V + ++V + P + P G L
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLN 578
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L CH + P P W + Q I+ +
Sbjct: 579 ----LSCHSASNPSPQYSWRING--IPQQHTQVLFIAKITPNNN---------------- 616
Query: 301 GSYICRAANKLGTSEKTVEL 320
G+Y C +N ++
Sbjct: 617 GTYACFVSNLATGRNNSIVK 636
Score = 115 bits (289), Expect = 3e-28
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 26/202 (12%)
Query: 14 FLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS 73
+A+ + + + V C + AQ+ +W + LP+S
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNG-----QSLPVS 510
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L + TL + ++ DA Y C + ++ S V L V
Sbjct: 511 PRLQLSNGNR-------------TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY 557
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P S G + L C + +P+P+ SWR G +L I +
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN-------GIPQQHTQVLFIAK 610
Query: 194 ITKEDRGTYYCVAENGVGKGTR 215
IT + GTY C N
Sbjct: 611 ITPNNNGTYACFVSNLATGRNN 632
Score = 91.6 bits (227), Expect = 3e-20
Identities = 32/215 (14%), Positives = 53/215 (24%), Gaps = 33/215 (15%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRR---------------ENNAILPTGG-----SI 183
V+EG+ V L SW + P I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLGQALQYD 242
Y + L I I + D G Y V P ++ D
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKD 127
Query: 243 -MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ C E +W + ++ S + T+ + + +
Sbjct: 128 AVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQLSNG---------NRTLTLFNVTRNDTA 177
Query: 302 SYICRAANKLGTSE-KTVELFESIIPVCPPQTQPS 335
SY C N + +V L P P + +
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLN 212
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 144 bits (365), Expect = 9e-41
Identities = 47/304 (15%), Positives = 91/304 (29%), Gaps = 40/304 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+I E I + G T+ L C V W + + +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCID----PDFVRWT----------FKTYFNEMVENKKN- 57
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ + + T G Y C +N +++ + + VR P +
Sbjct: 58 ------------EWIQEKAEATRTGTYTCSN----SNGLTSSIYVFVRDPAKLF-LVGLP 100
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGT 201
L E + C + S + LPT + + I R
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160
Query: 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA- 256
C A+ ++V + PV++VP+ + C ++
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
+W+K + Q ++ H + T+ + + G ++C A N G++
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280
Query: 317 TVEL 320
T L
Sbjct: 281 TTTL 284
Score = 38.9 bits (90), Expect = 0.002
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 17/134 (12%)
Query: 2 ESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMK 60
+ G F L + P +S + G T + C+++ +W+K
Sbjct: 166 QRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 61 VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN 120
++ ++ + + TL + + D+G + C N
Sbjct: 226 MNP---------QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA----N 272
Query: 121 NKI---SAEVDLQV 131
N + L+V
Sbjct: 273 NTFGSANVTTTLKV 286
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 141 bits (357), Expect = 1e-40
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 4/189 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--GSILKI 191
P + + + G+ + C A G P P ISW R I I + + L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA 251
I D G Y C A N G+ + ++V P I + L C E
Sbjct: 63 RNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHIIQL-KNETTYENGQVTLVCDAEG 120
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P P I W + T + +++ + ++ G Y C AA+++
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 312 GTSEKTVEL 320
G +K++ L
Sbjct: 181 GGHQKSMYL 189
Score = 109 bits (274), Expect = 1e-28
Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 45/217 (20%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLII 80
++ S + G + C A P + W + + I
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCR---ASGSPEPAISWFRNGK-------LIEENE---- 49
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVI 137
+Y S L V++I +D G Y C+ NK + LQV P I
Sbjct: 50 -------KYILKGSNTELTVRNIINSDGGPYVCRA----TNKAGEDEKQAFLQVFVQPHI 98
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----------RG 186
++ E V L C A G P P I+W+R + T G
Sbjct: 99 I--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 156
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
S L I + D G Y C A + +G ++++ +++E
Sbjct: 157 SSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIE 192
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 141 bits (356), Expect = 1e-40
Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 19/195 (9%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TAS 93
+ G TVEL C+ + W ++ K+ + R R
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ L++K+++ D+ Y C+V ++ EV L V SD + +GQ +
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSDTH-----LLQGQSL 115
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213
L + +P + R + G + L + Q+ +D GT+ C K
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKT------LSVSQLELQDSGTWTCTVLQNQKK- 168
Query: 214 TRRNIAVEV-EFAPV 227
I + V F
Sbjct: 169 VEFKIDIVVLAFQKA 183
Score = 96.2 bits (239), Expect = 8e-24
Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 47/196 (23%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPT--GGSIYRGS---------------- 187
+ +G V+L C A + + W+ N + G + +G
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 188 ---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
L I + ED TY C E+ K + + + + GQ+L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQ--KEEVQLLVFGLTANSDTHL---LQGQSLT---- 116
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L P++ + + T+ V +E + G++
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGK-----------------TLSVSQLELQDSGTWT 159
Query: 305 CRAANKLGTSEKTVEL 320
C E +++
Sbjct: 160 CTVLQNQKKVEFKIDI 175
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 143 bits (362), Expect = 7e-40
Identities = 71/341 (20%), Positives = 109/341 (31%), Gaps = 62/341 (18%)
Query: 21 AQRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
A P QEQ+ G VEL C W+K + +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGT-------GLVPSERV 56
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--------------------IIG 118
++ L V + D+G Y C+
Sbjct: 57 LV-------------GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
Query: 119 INNKISAEVDLQVRRPPVIS---DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175
+ + AE P + + L V V+ C A G+PTP ISW +
Sbjct: 104 EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163
Query: 176 ILPT---GGSIYR--GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAP 226
GG R L + + DRG Y CV EN G R+ ++V P
Sbjct: 164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRP 222
Query: 227 VITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHYSISHFATA 282
++ P A+ D++ C V + P I W+K + +V + Y
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 283 DEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
TD + V+++ + G Y C A N +G S + L
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 117 bits (293), Expect = 5e-30
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 34/236 (14%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKI 191
P LV G V+L C GG P W ++ ++P+ + L++
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVE--------------------VEFAPVITVP 231
+ ED G Y C ++ V AP T P
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 232 ---KPRLGQALQYDM-DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287
+L + C P P+I W+K ++ ++ I
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNG-REFRGEHRIGGIKL-----RHQQ 179
Query: 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNV 343
++ + ++ G+Y C NK G+ +T L + P + N
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL---DVLERSPHRPILQAGLPANQ 232
Score = 96.6 bits (240), Expect = 1e-22
Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 47/222 (21%)
Query: 19 TTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLP 71
P + + K + TV +C A P + W+K R
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLKNGRE------- 163
Query: 72 ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDL 129
R ++L+++ + +D G Y C V G + + +D+
Sbjct: 164 --------FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDV 214
Query: 130 QVRRP--PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA------------ 175
R P P++ + G V+ C P I W +
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 176 --ILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGK 212
+L T G+ +L + +T ED G Y C+A N +G
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
Score = 41.5 bits (97), Expect = 3e-04
Identities = 17/138 (12%), Positives = 31/138 (22%), Gaps = 21/138 (15%)
Query: 222 VEFAPVITVPKPR-----LGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYS 275
P + G A++ L C P VW+K+ L ++
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVE----LSCPPPGGGPMGPTVWVKDG--TGLVPSERVL 57
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+ ++V+ G+Y CR +
Sbjct: 58 VG---------PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGED 108
Query: 336 ELLPLRNVNMAVIFAEQP 353
E A +
Sbjct: 109 EAEDTGVDTGAPYWTRPE 126
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 149 bits (377), Expect = 9e-40
Identities = 60/342 (17%), Positives = 118/342 (34%), Gaps = 43/342 (12%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
+++ + + + S +G + L C+ + + + + + +
Sbjct: 213 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQH--- 269
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
L+ RD + + TL + + +D G Y C G+ K ++V
Sbjct: 270 ---KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVH 325
Query: 133 RPPVISDNST--RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190
P ++ S + + G+ V++ G+P P I W + N L + +I G +L
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLT 384
Query: 191 IPQITKEDRGTYYCVAENGVGKGTR-RNIAVEVEFAPVITVPKPRLGQALQYDMD----L 245
I ++++ D G Y + N + K + +++ V P I K + Y L
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQI-GEKSLISPVDSYQYGTTQTL 443
Query: 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQH--------------------------YSISH 278
C V A PPP I W + ++ + +
Sbjct: 444 TCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503
Query: 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
FA + T ++ Y C A NK+G E+ +
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
Score = 137 bits (347), Expect = 1e-35
Identities = 56/346 (16%), Positives = 109/346 (31%), Gaps = 63/346 (18%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLI- 79
+ S IS G T L C+V YA P + W + + +
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 80 ----------------IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINN 121
I ++ + + + Y+C+ + +G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG--- 537
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ + V R P I+ + +E + V L C A ++W + LP
Sbjct: 538 RGERVISFHVTRGPEIT--LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 182 SIY------------------------RGSILKIPQITKEDRGTYYCVAENGVGKG---T 214
I+++ + +D+G Y C+A++ K
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
R + V AP IT ++ +++ C PPP I+W K++ + L +
Sbjct: 656 VRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN--ETLVEDSGI 713
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + + K G Y C+A + LG ++
Sbjct: 714 VLKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 135 bits (341), Expect = 6e-35
Identities = 43/316 (13%), Positives = 80/316 (25%), Gaps = 45/316 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P +S T+++ C Q + W+ +
Sbjct: 32 PRLSIQKDILTIKANTTLQITCRGQR----DLDWLW-------------PNNQSGSEQRV 74
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVI---- 137
TL + + D G Y+C V +Q R P I
Sbjct: 75 EVTECSDGLFCKTLTIPKVIGNDTGAYKCFY----RETDLASVIYVYVQDYRSPFIASVS 130
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQI 194
+ + ++ + V + C R G+ IP
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190
Query: 195 TKEDRGTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRL----GQALQYDMDLEC 247
G +C A+ + V V+ P + G+ L L C
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV----LNC 246
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GSYI 304
I + E + + + + + +TI+ G Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 305 CRAANKLGTSEKTVEL 320
C A++ L T + + +
Sbjct: 307 CAASSGLMTKKNSTFV 322
Score = 130 bits (328), Expect = 2e-33
Identities = 61/350 (17%), Positives = 91/350 (26%), Gaps = 83/350 (23%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G V + YP + W K PL S I+
Sbjct: 345 GERVRIPAKYL---GYPPPEIKWYKNGI-----PLE-----------SNHTIKAG----- 380
Query: 96 YTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLV--VSEGQP 152
+ L + ++ E D G Y + I K S V L V PP I + S S V G
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440
Query: 153 VQLECFAGGHPTPR-ISWRRENNAILPTGGSIYR-------------------------- 185
L C P P I W + S
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 186 -----------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
++ + Y C A N VG+ R I+ V P IT+ P
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPEITLQ-PD 558
Query: 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294
+ Q + L C + + W K Q + + D + +
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS 618
Query: 295 IEKRQY-------------GSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
G Y+C A ++ V +++ P
Sbjct: 619 NSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
Score = 106 bits (265), Expect = 4e-25
Identities = 25/240 (10%), Positives = 54/240 (22%), Gaps = 26/240 (10%)
Query: 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR 166
+ C S + P +S L + +Q+ C G
Sbjct: 8 AVALWLCVE----TRAASVGLPSVSLDLPRLSIQKD-ILTIKANTTLQITCR--GQRDLD 60
Query: 167 ISWRRENNAILP-----TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221
W + L IP++ D G Y C + + V+
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQ 119
Query: 222 VEFAPVITVPKPRLGQALQY-----DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
+P I + G + + C + + ++ + + S
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + G C A + + + + +
Sbjct: 180 DS--------KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS 231
Score = 53.2 bits (127), Expect = 8e-08
Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 12/139 (8%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVW 259
+ CV G +++++ P +++ K L + + C + + W
Sbjct: 10 ALWLCVETRAASVGLPS-VSLDL---PRLSIQKDILTIKANTTLQITCRGQ----RDLDW 61
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
+ + Q + +D T+ + + G+Y C S V
Sbjct: 62 LWPNNQSGSEQRVEVTE----CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 320 LFESIIPVCPPQTQPSELL 338
+ + P + ++
Sbjct: 118 VQDYRSPFIASVSDQHGVV 136
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 138 bits (350), Expect = 1e-39
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 14/189 (7%)
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---G 186
++ + PVI+ ++ + C +P P ISW R I G
Sbjct: 3 KLPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
+L I + D G Y C A NGVG A++V+ P IT P + L
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C P P++ WIK D L N ++ ++R+ ++K G Y C
Sbjct: 122 CTTMGNPKPSVSWIKGD--SALRENSRIAVL--------ESGSLRIHNVQKEDAGQYRCV 171
Query: 307 AANKLGTSE 315
A N LGT+
Sbjct: 172 AKNSLGTAY 180
Score = 122 bits (307), Expect = 2e-33
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSL 78
+ P I+ + + C+ + YP + W + +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCA---VESYPQPEISWTRN-------------KILI 48
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ D+R++IR + L + ++++D G Y C G+ + + LQV+ P I+
Sbjct: 49 KLFDTRYSIRENGQ----LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKE 197
++ + EG L C G+P P +SW + ++A+ ++ L+I + KE
Sbjct: 105 RP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE 223
D G Y CVA+N +G + + +EVE
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVE 189
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 141 bits (356), Expect = 3e-39
Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 55/321 (17%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T + P ++QI GG C A P V W K +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQ---ATGDPKPRVTWNKKGK------------- 45
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQVIIGINN---KISAEVDLQVR 132
+ RF S+ L ++ ++ D Y C N +I+ L V
Sbjct: 46 --KVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA----QNSVGEITVHAKLTVL 99
Query: 133 RPPVIS------DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----S 182
R + D + VV + + C A G+P P I+W ++ + P+
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQAL 239
R L+I + D+G Y CVA N G + V AP ++
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
++++ C P P + W++ + LT + + + ++
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGA--EDLTPEDDMPVG---------RNVLELTDVKDS- 267
Query: 300 YGSYICRAANKLGTSEKTVEL 320
+Y C A + LG E ++
Sbjct: 268 -ANYTCVAMSSLGVIEAVAQI 287
Score = 116 bits (291), Expect = 6e-30
Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 22/214 (10%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP + + G C A G P PR++W ++ +
Sbjct: 3 GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 186 GSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--- 241
G++L+I + T D Y CVA+N VG+ + + V + P + Q
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 242 ----DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ C P P I W K D V + + I + +++ + E+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIK------QLRSGALQIESSEE 173
Query: 298 RQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
G Y C A N G + + P+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR 207
Score = 106 bits (267), Expect = 2e-26
Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 29/213 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q ++ + T + C+ A P + W K P+ S
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCA---ASGNPDPEITWFKDFL-----PVDPSA------S 154
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR-PPVIS 138
+ R + L ++ +ETD G Y C G+ A + ++V+ P S
Sbjct: 155 NGRIKQ-----LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFS 209
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
S + G V + C A G P P + W + L + G + +D
Sbjct: 210 ILPM-SHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPVGR-NVLELTDVKD 266
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
Y CVA + +G + V+ P
Sbjct: 267 SANYTCVAMSSLGV-IEAVAQITVKSLPKAGTK 298
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 141 bits (356), Expect = 2e-38
Identities = 50/300 (16%), Positives = 84/300 (28%), Gaps = 50/300 (16%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G + +KC + V W + D ++ + +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEE---------ENYFPGAEYDGKYLV-----LPS 163
Query: 96 YTLLVKDIQETDA-GYYRCQVI--IGINNKISAEVDLQVRRP------PVISDNSTRSLV 146
L ++++ D Y+C+ + ++SA V P + L
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRE------NNAILPTGGSIYRGSILKIPQITKEDRG 200
+ + L C A G P P W + A++ L I ED G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260
Y CV N VG + V + P C P + W+
Sbjct: 284 KYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 342
Query: 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
K D + + + I D+ G Y C N ++E + EL
Sbjct: 343 K-DGKAIGHSESVLRIESVKKEDK----------------GMYQCFVRNDRESAEASAEL 385
Score = 116 bits (293), Expect = 1e-29
Identities = 51/322 (15%), Positives = 90/322 (27%), Gaps = 43/322 (13%)
Query: 22 QRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
Q+ P +I E++C A P +IW++ D + G
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDG----TAVGDVPGLR 53
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
I D + A QE A Y C + IS +V ++
Sbjct: 54 QISSDGKLVFPPFRAEDY-------RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY 106
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGH---PTPRISWRRENNAILPTGG------SIYRGSI 188
V G ++C +SW + G +
Sbjct: 107 EA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 165
Query: 189 LKIPQITKED-RGTYYCVAENGVGKGTRRNIAVEV--------EFAPVITVPKPRLGQAL 239
L I ++ ED +Y C ++ + TR + AP + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
Query: 240 Q-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
+ + L C + +P P+ W K + + T+ +
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFI-EGTTRKQAVVLNDRV----KQVSGTLIIKDAVVE 280
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
G Y+C N +G L
Sbjct: 281 DSGKYLCVVNNSVGGESVETVL 302
Score = 106 bits (265), Expect = 9e-26
Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 32/236 (13%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSI 188
+ PV T + S ++EC A G+P P I W R + + + + G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60
Query: 189 LKIPQITKED------RGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQA 238
L P ED Y C+A N G R++ V A G +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 239 LQYDMDLECHVEAY---PPPAIVWIKEDTQQVLTNNQHYSISHFATAD---EFTDTTIRV 292
++C + ++ + W ++ ++ Y + +
Sbjct: 121 AV----IKCLIPSFVADFVEVVSWHTDE-EENYFPGAEYDGKYLVLPSGELHIREVG--- 172
Query: 293 ITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVI 348
+ Y SY CR ++L + ++ P + L + ++
Sbjct: 173 ---PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
Score = 35.3 bits (81), Expect = 0.028
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 35/111 (31%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q D G C + WMK + + S
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGK-----AIGHSES-------- 353
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
L ++ +++ D G Y+C V N A +L++
Sbjct: 354 -------------VLRIESVKKEDKGMYQCFV----RNDRESAEASAELKL 387
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 133 bits (337), Expect = 1e-37
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 14/202 (6%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------- 185
V +S + + E PV+L C G +PR+ W+ + +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 186 -----GSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQAL 239
+ + +T+ED GTY C+ G + + V P +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
L C + PP W K+ + S+ + T + +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
G Y C A N GT + +
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203
Score = 106 bits (266), Expect = 2e-27
Identities = 42/219 (19%), Positives = 61/219 (27%), Gaps = 29/219 (13%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
A + T+ E V+L C+ + V W T L
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCA---YSGFSSPRVEWKFDQ--GDTTRLVCYNNKI 55
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPV 136
+ R + K + D G Y C V N+ +V L V PP
Sbjct: 56 TASYEDRVTF------LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS 109
Query: 137 ISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGS-----------IY 184
+ G L C G P +W ++ + S
Sbjct: 110 KP-TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L ++ D G Y C A NG G + AV +E
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 206
Score = 48.4 bits (115), Expect = 8e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
P+ ++ IG L CS Q W K +P + S+
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDG-----IVMPTNPKSTR 157
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+S + + T L+ + +D G Y C+
Sbjct: 158 AFSNSSYVLNPTTG----ELVFDPLSASDTGEYSCEA 190
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 132 bits (334), Expect = 5e-37
Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 17/203 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---------- 182
+ V + S + V E + ++L C G +PR+ W+ +
Sbjct: 1 KGSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 183 --IYRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQAL 239
+ S + +T++D G Y C+ G+ +I + V P +
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEK 297
L C + PP W K+ + + + ++ + + +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 298 RQYGSYICRAANKLGTSEKTVEL 320
G Y C+A N GT+ ++
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201
Score = 110 bits (275), Expect = 1e-28
Identities = 43/222 (19%), Positives = 69/222 (31%), Gaps = 32/222 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ + +++L C+ + V W V + S ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCT---YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
F S+ + + D G Y C V G N + L V PP
Sbjct: 59 RVTF--------SSSGITFSSVTRKDNGEYTCMVSEEGG-QNYGEVSIHLTVLVPPSKPT 109
Query: 140 NSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYR------------G 186
S V+ G L C G P SW ++ ++L R
Sbjct: 110 IS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L +T D G YYC A+NG G R+ A ++ +
Sbjct: 169 GDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMDAVELN 209
Score = 52.3 bits (125), Expect = 4e-08
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 12/120 (10%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
T P+ IS IG L CS W K + T +
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGI-------SMLTADAK 152
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPV 136
R + + + L+ + D+G Y CQ G + S + V
Sbjct: 153 KTRAFMNS-SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR-SEAAHMDAVELNV 210
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 131 bits (332), Expect = 1e-35
Identities = 50/319 (15%), Positives = 101/319 (31%), Gaps = 65/319 (20%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V LKC V + I W K +R IS ++D T
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDER-------EISVDE-----------KHDFKDGICT 62
Query: 98 LLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
LL+ + + DAG Y + ++ K + + L + + +++
Sbjct: 63 LLITEFSKKDAGIYEVIL---KDDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKI 118
Query: 156 EC----------FAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGT 201
+ +++W +AI + G L+I + T D+G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 202 YYCVAENGVGKGTRR-NIAVEV-----------EFAPVITVPKPRLGQALQYDMD----- 244
Y +G + +++ + + A + + R+ L +
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 245 ---LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
L C+V PPP + W+K + + L ++ H ++ + + + G
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNE--KALASDDHCNLKF----EAGRTAYFTINGVSTADSG 292
Query: 302 SYICRAANKLGTSEKTVEL 320
Y NK G+ +
Sbjct: 293 KYGLVVKNKYGSETSDFTV 311
Score = 118 bits (297), Expect = 1e-30
Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 23/240 (9%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYR-- 185
+ P S V+ V L+C A I W ++ I ++
Sbjct: 2 IDPFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
L I + +K+D G Y + ++ GK + + + E + + + D+ +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 246 ECHVEA----------YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
+ E + W + + + +++
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGV-----TGEQIWLQINEP 171
Query: 296 EKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
G Y+ + +KTV+L + Q + + N A + P
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 231
Score = 93.1 bits (231), Expect = 1e-21
Identities = 35/222 (15%), Positives = 60/222 (27%), Gaps = 45/222 (20%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGS 76
L + +I+ ++L V Y + V W + + +
Sbjct: 101 LMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRY-------- 151
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR---- 132
R L + + D G Y + VDL +
Sbjct: 152 -----SDRVKTGVT--GEQIWLQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYDE 203
Query: 133 -----------------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175
R V+ + + EG+ + L C G P P +SW + A
Sbjct: 204 AYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 262
Query: 176 ILPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ R + I ++ D G Y V +N G
Sbjct: 263 LASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 131 bits (330), Expect = 2e-35
Identities = 56/338 (16%), Positives = 96/338 (28%), Gaps = 57/338 (16%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSS 77
+R I +S C + + W K D P+ST +
Sbjct: 5 KCKEREEKIILVSSA-----NEIDVRPCPLNPNEHKGTITWYKDD-----SKTPVSTEQA 54
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV-RR 133
I L + D+G+Y C V N + ++ +
Sbjct: 55 SRIH-----------QHKEKLWFVPAKVEDSGHYYCVV----RNSSYCLRIKISAKFVEN 99
Query: 134 PPVISDNS--TRSLVVSEGQPVQLECF------AGGHPTPRISWRRENNAILPTGGSI-Y 184
P + N+ + L C + P++ W ++ +L
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 185 RGSILKIPQITKEDRGTYYCVAEN---GVGKGTRRNIAVEV-----EFAPVITVPKPRLG 236
L + + ++ RG Y C A G R I PVI P
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219
Query: 237 QALQ-YDMDLECHVEAYPPPAIVWIKEDTQ----QVLTNNQHYSISHFATADEFTDTTIR 291
+ + L C+V W + + +YS+ + A T T+
Sbjct: 220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279
Query: 292 VIT--IEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327
I+ + + C A N G ++L I PV
Sbjct: 280 NISEIESRFYKHPFTCFAKNTHGIDAAYIQL---IYPV 314
Score = 92.1 bits (228), Expect = 3e-21
Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 53/234 (22%)
Query: 16 INLTTAQRTPTISYISQ---EQIKDIGGTVELKCSVQY---AQDYP---VIWMKVDRNKV 66
I+ + P + Y +Q +Q + G L C ++ + W K
Sbjct: 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC---- 147
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV---IIGINNKI 123
+PL + ++D L+V ++ E G Y C +G I
Sbjct: 148 -KPLLLDNIHFSGVKD--------------RLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 124 SAEVDLQV-----RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178
+ ++ PVI + ++ V G +QL C G + W+ + I
Sbjct: 193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 179 TGGSIYRG----------------SILKIPQITKED-RGTYYCVAENGVGKGTR 215
+ ++L I +I + + C A+N G
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
Score = 88.2 bits (218), Expect = 7e-20
Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 33/232 (14%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYR----G 186
R +I LV S + C + I+W ++++ + R
Sbjct: 9 REEKII-------LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQY--D 242
L ED G YYCV N R I+ + + + Q L D
Sbjct: 62 EKLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 243 MDLECH------VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
L C E P + W +D + +L +N H+S + V+ +
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQW-YKDCKPLLLDNIHFSGV---------KDRLIVMNVA 170
Query: 297 KRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVI 348
++ G+Y C A+ + + I + + ++ N M V
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 132 bits (333), Expect = 6e-35
Identities = 44/312 (14%), Positives = 84/312 (26%), Gaps = 52/312 (16%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
+ T + K + L C + + V W+ D +
Sbjct: 138 RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCD------------SQGESCK 184
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ A+ + E RC + + + + + + P +
Sbjct: 185 EESPAVVKKEEKV--------LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236
Query: 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP----------TGGSIYRGSILK 190
L + G+P+ + C A + ++W EN A+ T ++ R
Sbjct: 237 ---LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECH 248
+ + + D G Y C + + + V + I + +
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
+AYP W + Q + +I K Q G YI A
Sbjct: 350 FKAYPQIRCTWTFSR--KSFPCEQKGLDN---------GYSISKFCNHKHQPGEYIFHAE 398
Query: 309 NKLGTSEKTVEL 320
N K L
Sbjct: 399 NDDAQFTKMFTL 410
Score = 128 bits (322), Expect = 2e-33
Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 36/257 (14%)
Query: 102 DIQETDAGYYRCQVIIGINNKISA----------------EVDLQVRRPPVISDNSTRSL 145
+ D +C +I NN S L+ + + + ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTY 202
V + L+ W +++++ + I ++T+ G Y
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262
++ T V + + T+ +P + ++ L C E+ P P + W+
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176
Query: 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322
D+Q + ++ + + C A N+LG + +
Sbjct: 177 DSQGESCKEESPAVVKKEE-----------KVLHELFGTDIRCCARNELGRECTRLFTID 225
Query: 323 SIIPVCPPQTQPSELLP 339
P T P L
Sbjct: 226 LNQT--PQTTLPQLFLK 240
Score = 127 bits (319), Expect = 4e-33
Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 42/355 (11%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ Y + D+ ++ L+ V A +W+ + +P
Sbjct: 47 QSSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQP------------ 93
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN---KISAEVDLQVRRPPVIS 138
R ++++ + ET AG Y + + + + +R + +
Sbjct: 94 HFDLQNRGVV-----SMVILKMTETQAGEYLLFI----QSEATNYTILFTVSIRNTLLYT 144
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
E Q L C + P P + W ++ + + +
Sbjct: 145 -LRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELF 202
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL--GQALQYDMDLECH-VEAYPPP 255
C A N +G+ R +++ P T+P+ L G+ L + C V
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVNHGF 258
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT-IEKRQYGSYICRAANKLGTS 314
+ W E+ + L ++ +S ++T ++ + + G Y C ++ S
Sbjct: 259 GLTWELEN--KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 315 EKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT---SWEPQRKQLNCS 366
V + E ++ E+ +V F P +W RK C
Sbjct: 317 A-LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Score = 110 bits (277), Expect = 3e-27
Identities = 28/212 (13%), Positives = 57/212 (26%), Gaps = 17/212 (8%)
Query: 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTG 75
L T T + +G + ++C + + W ++ L
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK-----ALEEGNY 274
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + T V + D GYY C + S + +
Sbjct: 275 FEMSTYSTNR-----TMIRILFAFVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKG 325
Query: 136 VI-SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI 194
I + NS+ + + + +P R +W + + G +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCN 385
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
K G Y AEN + + + +
Sbjct: 386 HKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT 416
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 130 bits (328), Expect = 6e-35
Identities = 50/311 (16%), Positives = 95/311 (30%), Gaps = 41/311 (13%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
++ S ++ +IW +++ + + + ++R +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDR-----DLEEPINFRLPENRISKE------KDV 80
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR---SLVVSEGQPVQ 154
L + D G Y C ++ L+V + ++ + + E +
Sbjct: 81 LWFRPTLLNDTGNYTC-MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 155 LEC-----FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA--- 206
+ C + P I+W I I G L + G Y CV
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYP 199
Query: 207 ENGVGKGTRRNIAVEVEFAPVITVPKPRLGQ---------ALQYDMDLECHV----EAYP 253
ENG R + V+V +P VP P + ++ + C V
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVP-PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 254 PPAIVWIKEDTQQVLTNNQHY---SISHFATADEFTDTTIRVITIEKRQYG-SYICRAAN 309
+ W + + SISH T DE + + + SY+C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 310 KLGTSEKTVEL 320
G K ++
Sbjct: 319 AKGEVAKAAKV 329
Score = 81.1 bits (199), Expect = 3e-17
Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 64/256 (25%)
Query: 16 INLTTAQRTP---TISYISQEQIKDIGGTVELKCSVQ--YAQDYP---VIWMKVDRNKVT 67
L Q+ + + ++ G + C Y + W
Sbjct: 109 FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN 168
Query: 68 EPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---IS 124
I G +L ++ G Y C V N + ++
Sbjct: 169 FNNVIPEGMNLSFLI--------------------ALISNNGNYTCVVTYPENGRTFHLT 208
Query: 125 AEVDLQV------RRPPVISD-NSTRSLVVSEGQPVQLECFA----GGHPTPRISWRREN 173
+ ++V PPVI N G+ + + C + W +
Sbjct: 209 RTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268
Query: 174 NAI--------------LPTGGSIYRGSILKIPQITKEDRGT-YYCVAENGVGKGTRRNI 218
R IL I ++T ED Y C A + G+ +
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAA 327
Query: 219 AVEVEFAPVITVPKPR 234
V+ + VP PR
Sbjct: 328 KVKQK------VPAPR 337
Score = 78.0 bits (191), Expect = 4e-16
Identities = 30/232 (12%), Positives = 57/232 (24%), Gaps = 47/232 (20%)
Query: 138 SDNSTRSLVVSEGQPVQLEC-----------FAGGHPTPRISWRRENNAILPTGGSIYR- 185
++ R + V E +P +++C + W +R
Sbjct: 10 GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69
Query: 186 --------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
+L D G Y C+ N ++ +EV +L
Sbjct: 70 PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 238 ALQYD---------MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288
Y +++ + + P I W + N +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC--YKIQNFNNVIPE---------GM 177
Query: 289 TIRVITIEKRQYGSYICRAANKLG------TSEKTVELFESIIPVCPPQTQP 334
+ + G+Y C T TV++ S PP
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 125 bits (316), Expect = 1e-34
Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 17/196 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGSIYR------ 185
R + +S G+ C G ISW N L
Sbjct: 1 RVLQVD-IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 186 -GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
S L I +D G Y CV G + + V++ + D
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+ C V + PP I+W + +L + + + ++ +++ I+K G+Y
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--------LSNNYLQIRGIKKTDEGTYR 171
Query: 305 CRAANKLGTSEKTVEL 320
C ++
Sbjct: 172 CEGRILARGEINFKDI 187
Score = 124 bits (313), Expect = 3e-34
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
R + + + +G + C V A+D + W + G L
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN------------GEKLSPN 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
R ++ ++ S TL + + DAG Y+C V + A V++++ + + +
Sbjct: 49 QQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKED 198
T EG+ + C P I W+ + ++ + + L+I I K D
Sbjct: 108 T-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 199 RGTYYCVAENGVGKG-TRRNIAVEV 222
GTY C ++I V V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 25/120 (20%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+N+ Q+ Q G + C V +IW R + +
Sbjct: 93 VNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTIIWKHKGR-----DVIL 143
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQV 131
D RF + S L ++ I++TD G YRC+ I ++ + V
Sbjct: 144 KK-------DVRFIV-----LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 128 bits (323), Expect = 3e-34
Identities = 49/314 (15%), Positives = 94/314 (29%), Gaps = 34/314 (10%)
Query: 25 PTISYIS-QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P+ + + +G KC +D + D++ V +
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWE----------KIG 76
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNST 142
+ + L + + D+ Y C V + + V +R+PP T
Sbjct: 77 KTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI-PET 135
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRG 200
L + + L C I+W + N ++ G + G L I ED G
Sbjct: 136 YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSG 195
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPK---------PRLGQALQYDMDLECHVEA 251
Y C + +I V + + P++ + ++ C +
Sbjct: 196 RYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVS 254
Query: 252 YP----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS-YICR 306
I W + + YSI ++ T+ T+ + + G+ Y CR
Sbjct: 255 TSLLVDDVLIDWENPSGWIIGLDFGVYSILT--SSGGITEATLYFENVTEEYIGNTYTCR 312
Query: 307 AANKLGTSEKTVEL 320
N T +
Sbjct: 313 GHNYYFDKTLTTTV 326
Score = 102 bits (256), Expect = 6e-25
Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 23/226 (10%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR---------ISWRRENNAILPTGGSIY 184
P T + + + G+P +C ++W + P +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 185 RGSILKIPQITKEDRGTYY-CVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM 243
G L I T D Y C G + + + P LG +Y +
Sbjct: 88 NGD-LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 244 DLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
DL C + A I W K + Q+++ + YS S + + E G
Sbjct: 147 DLYCGILYAKHYNNITWYK-NNQELIIDGTKYSQS---------GQNLIIHNPELEDSGR 196
Query: 303 YICRAANKLGTSEKTVELFESIIP-VCPPQTQPSELLPLRNVNMAV 347
Y C + + + I V P Q +L+ +N+ +
Sbjct: 197 YDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
Score = 91.4 bits (226), Expect = 8e-21
Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 42/230 (18%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
I + ++ P+ + E ++L C + YA+ Y I W K ++ +
Sbjct: 120 IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ-------ELII 172
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEV 127
+ + + L++ + + D+G Y C V +
Sbjct: 173 DGTKYSQSGQ------------NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP----RISWRRENNAILPTGGSI 183
+ + + V+ G+P + C A I W + I+ +
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280
Query: 184 Y---------RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE 223
Y + L +T+E G TY C N V +E
Sbjct: 281 YSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 124 bits (312), Expect = 4e-34
Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 19/196 (9%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--- 185
LQV + +S G+ C A G P + + I+ T + +
Sbjct: 3 LQVTISL-------SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEG 55
Query: 186 -GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
S L I ED G Y C A + G+ + +E+ D +
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE 115
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+ C V + P PA+ W+ + + ++ +++ + ++++ I K G Y
Sbjct: 116 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYR 167
Query: 305 CRAANKLGTSEKTVEL 320
C + ++
Sbjct: 168 CEGRVEARGEIDFRDI 183
Score = 118 bits (297), Expect = 6e-32
Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 21/202 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
++ + +G + C+ + + W K+ R
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQGEKIIS-------------TQR 48
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
++ + S L + + DAG YRCQ A V L++ +
Sbjct: 49 VVVQKEGVRSR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 105
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGT 201
+G+ ++ C P P +SW N + ++ + L+I I K D G
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 165
Query: 202 YYCVAENGVGKG-TRRNIAVEV 222
Y C R+I V V
Sbjct: 166 YRCEGRVEARGEIDFRDIIVIV 187
Score = 41.3 bits (97), Expect = 2e-04
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ L Q+ T + Q G E+ C V + P + W+ + + +
Sbjct: 89 VVLEIYQK-LTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNE-----EVTTIS 141
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
D+RFA+ + L + +I ++D G YRC+ ++ A ++ R
Sbjct: 142 -------DNRFAM-----LANNNLQILNINKSDEGIYRCEG------RVEARGEIDFRDI 183
Query: 135 PVI 137
VI
Sbjct: 184 IVI 186
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 126 bits (317), Expect = 5e-34
Identities = 52/301 (17%), Positives = 83/301 (27%), Gaps = 60/301 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
I+ TV L C V + W ST S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGT-----ATQTSTPS------- 49
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ D+G YRCQ + S + L++ R ++ S+R
Sbjct: 50 --------------YRITSASVNDSGEYRCQR---GLSGRSDPIQLEIHRGWLLLQVSSR 92
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V +EG+P+ L C A + + R A + S L I + GTY
Sbjct: 93 --VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF----KFFHWNSNLTILKTNISHNGTY 146
Query: 203 YCVAENGVGKGTRR-NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK 261
+C + ++ V+ F + + L C + + +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY 206
Query: 262 ------EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
T + + Y I D G Y C AA + G
Sbjct: 207 FSFYMGSKTLRGRNTSSEYQILTARREDS----------------GLYWCEAATEDGNVL 250
Query: 316 K 316
K
Sbjct: 251 K 251
Score = 90.7 bits (225), Expect = 5e-21
Identities = 27/206 (13%), Positives = 57/206 (27%), Gaps = 32/206 (15%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
VI+ + V + + V L C P W A + S +I
Sbjct: 2 AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------YRITS 54
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD-MDLECHVEA- 251
+ D G Y C + R+ +++E + + + + + L CH
Sbjct: 55 ASVNDSGEYRCQRGL-----SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 252 YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310
+++ + + N + +I + G+Y C K
Sbjct: 110 KLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHN----------------GTYHCSGMGK 153
Query: 311 LGTSEKTVELFESIIPVCPPQTQPSE 336
+ + + + P
Sbjct: 154 HRYTSAGISVTVKELFPAPVLNASVT 179
Score = 88.8 bits (220), Expect = 2e-20
Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 30/188 (15%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L+C +D V + RN + +S L
Sbjct: 97 GEPLALRCHA--WKDKLVYNVLYYRNG--KAFKFFHWNS-------------------NL 133
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQL 155
+ + G Y C + G + SA + + V+ PV++ ++ + + EG V L
Sbjct: 134 TILKTNISHNGTYHCSGM-GKHRYTSAGISVTVKELFPAPVLN--ASVTSPLLEGNLVTL 190
Query: 156 ECFAGGHP-TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
C P + T S +I +ED G Y+C A G
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250
Query: 215 RRNIAVEV 222
+R+ +E+
Sbjct: 251 KRSPELEL 258
Score = 44.1 bits (104), Expect = 3e-05
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD 82
P ++ + + G V L C + P + + ++ L SS
Sbjct: 170 PAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS----- 223
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQV 131
+ + D+G Y C+ G K S E++LQV
Sbjct: 224 --------------EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 124 bits (312), Expect = 7e-34
Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 50/232 (21%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
R I+ + + G V+L C A +P W K+++ +P S
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMNK-----EIPNGNTS 65
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
LI + DAG+Y C+V + S L V P
Sbjct: 66 ELIFNA--------------------VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105
Query: 137 ISDNST--------------RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182
S S + G + L+C A G P P W + +
Sbjct: 106 SFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-- 163
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
+ +P + E +GTY+C N + + + ++ + P +
Sbjct: 164 ---KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNK 212
Score = 120 bits (302), Expect = 2e-32
Identities = 43/234 (18%), Positives = 70/234 (29%), Gaps = 39/234 (16%)
Query: 117 IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI 176
+G ++ V R I+ + S V GQ V+L C A GHP + W + N I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
Query: 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP--------VI 228
S L + +D G Y C N + ++V P +
Sbjct: 60 -----PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 229 TVPKPRLGQALQ-------YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
+ K ++ + L+C P P W K + + Y + +
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDL 174
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+ G+Y C N + + E II P
Sbjct: 175 EHQ----------------GTYWCHVYNDRDSQDSKK--VEIIIDELNNLGHPD 210
Score = 42.9 bits (101), Expect = 6e-05
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 33/130 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
I Q G T+ L+C A P W K + PL T ++
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNEL-----PLTHETKKLYMVP 170
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ G Y C V +++ S +V++ + +
Sbjct: 171 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG--H 208
Query: 142 TRSLVVSEGQ 151
+ + Q
Sbjct: 209 PDNKEQTTDQ 218
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 121 bits (306), Expect = 3e-33
Identities = 48/189 (25%), Positives = 70/189 (37%), Gaps = 18/189 (9%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
R+L V L C GHP P + W R+ I+ G L I +T
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-----DMDLECHVEA 251
+D Y A N G ++EVE I +PK G + + ++
Sbjct: 72 DDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P P I W K ++ NN HY + T + + + G Y+ A N+
Sbjct: 131 KPDPVITWQKGQ--DLIDNNGHYQVIV--TRSFTSLVFPNGVERKDA--GFYVVCAKNRF 184
Query: 312 GTSEKTVEL 320
G +KTVEL
Sbjct: 185 GIDQKTVEL 193
Score = 98.3 bits (245), Expect = 2e-24
Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 41/216 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P + L C V +P V W + + II
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVT---GHPKPIVKWYRQGKE--------------IIA 47
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVIS 138
D + + L++ + + DA Y+ + N+ +S L+V P I
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA----TNQGGSVSGTASLEVEVPAKIH 103
Query: 139 ----DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGS 187
++ G+ V ++ G P P I+W++ + I G S S
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT--S 161
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
++ + ++D G Y A+N G ++ + ++V
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA 196
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 121 bits (305), Expect = 4e-33
Identities = 41/180 (22%), Positives = 62/180 (34%), Gaps = 23/180 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
L VS+GQPV+L C G P I W ++ + L + + +
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256
D G Y+C E+G + + + VE P TV L L C P P
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 257 -IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
IVW + T ++ S+ + V + Q + C A N G +
Sbjct: 130 TIVWWR-GTTKIGGPAPSPSV-------------LNVTGVT--QSTMFSCEAHNLKGLAS 173
Score = 112 bits (281), Expect = 9e-30
Identities = 46/204 (22%), Positives = 70/204 (34%), Gaps = 27/204 (13%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLII 80
+ + G V+L CS + + W+K +++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS---VEGMEEPDIQWVK--------------DGAVVQ 44
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ I L +K ++ +DAG Y CQV G +IS V L V P +
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE 104
Query: 141 STRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDR 199
+ L V P QL C A G P P I W R I S+L + +
Sbjct: 105 P-KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---PSPSVLNVTGV--TQS 158
Query: 200 GTYYCVAENGVGKGTRRNIAVEVE 223
+ C A N G + R V ++
Sbjct: 159 TMFSCEAHNLKGLASSRTATVHLQ 182
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 125 bits (315), Expect = 5e-33
Identities = 48/343 (13%), Positives = 96/343 (27%), Gaps = 65/343 (18%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQY----AQDYP---VIWMKVDRNKVTEPLP 71
A+ + + + G V L+C A P + W K D
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND-----SART 67
Query: 72 ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVD 128
+ + + L + + D+G Y C N ++
Sbjct: 68 VPGEEETRMW-----------AQDGALWLLPALQEDSGTYVCTT----RNASYCDKMSIE 112
Query: 129 LQV-RRPPVISDNSTRSLVVSEGQPVQLEC-----FAGGHPTPRISWRRENNAILPTGG- 181
L+V + +++ L C F +I W +++ +
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172
Query: 182 --SIYRGSILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEV-----EFAPVITVP 231
S+ + L + + ED G Y CV R+I + + E PVI P
Sbjct: 173 FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232
Query: 232 KP----RLGQALQYDMDLECHVEA---YPPPAIVWIKEDTQQVLTNNQHYSIS------H 278
LG L + C V P ++W + + + ++ +
Sbjct: 233 LKTISASLGSRLT----IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 279 FATADEFTDTTIRVITIEKRQYGS-YICRAANKLGTSEKTVEL 320
+ + + + + + + C N L +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 107 bits (268), Expect = 1e-26
Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 34/249 (13%)
Query: 124 SAEVDLQVRRPPVISDNST------RSLVVSEGQPVQLEC-------FAGGHPTPRISWR 170
+ LQ + + + EG+PV L C +A P ++W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 171 RENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
+ ++A G R L + +ED GTY C N + +I + V
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENT 119
Query: 227 VITVPKPRLGQALQYDMD-------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+P Q L L I W K D+ + +N+ +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLS--- 175
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL-FESIIPVCPPQTQPSELL 338
T + V + G Y C + + E I +T P +
Sbjct: 176 ----VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS 231
Query: 339 PLRNVNMAV 347
PL+ ++ ++
Sbjct: 232 PLKTISASL 240
Score = 92.8 bits (230), Expect = 3e-21
Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 53/236 (22%)
Query: 16 INLTTAQRTP-TISYISQEQIKDIGGTVELKCSVQ--YAQDYP---VIWMKVDRNKVTEP 69
I L + T + +IS QI + + L C + +D + W K
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS-----LL 165
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAE 126
L L +R + LLV D+ DAGYYRC + + I+
Sbjct: 166 LDKDNEKFLSVRGT------------THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Query: 127 VDLQVR-----RPPVISDNSTRSLVVSEGQPVQLEC---FAGGHPTPRISWRRENNAILP 178
++L+++ PVI + +++ S G + + C G P + W N+ +
Sbjct: 214 IELRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Query: 179 -----------------TGGSIYRGSILKIPQITKEDRGTYY-CVAENGVGKGTRR 216
Y L +T+ED + CV N + T R
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 123 bits (309), Expect = 1e-32
Identities = 36/295 (12%), Positives = 81/295 (27%), Gaps = 36/295 (12%)
Query: 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92
E + ++ T L CS PV+W ++ + E G+
Sbjct: 9 ELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTF--------------- 49
Query: 93 SSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR---RPPVISDNSTRSLVV 147
+ L + ++ D G Y C G+ + + V + +D + +
Sbjct: 50 --SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
+E + + C P ++ + + ++ I + +Y C
Sbjct: 108 TEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGI-----FEDRSYICKTT 161
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPPAIVWIKEDTQ 265
G + V I V + ++ ++ L C V W +
Sbjct: 162 IGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221
Query: 266 QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + E G+Y C + + +
Sbjct: 222 SGRLVEPVTDFLL--DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 84.8 bits (209), Expect = 8e-19
Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 31/206 (15%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SILKIPQITKE 197
LV++ L C + + W R + G S+L + +T
Sbjct: 6 PGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVEFAP-----VITVPKPRLGQALQY-DMDLECHVEA 251
D G Y+C + G T + + + + + ++ + C V
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD 121
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P + ++ L + ++ SYIC+
Sbjct: 122 -PQLVVTLHEKKGDVALPVPYDHQRGFSGIFED----------------RSYICKTTIGD 164
Query: 312 GTSEKTV-ELFESIIPVCPPQTQPSE 336
+ ++ + +
Sbjct: 165 REVDSDAYYVYRLQVSSINVSVNAVQ 190
Score = 84.8 bits (209), Expect = 1e-18
Identities = 33/195 (16%), Positives = 51/195 (26%), Gaps = 37/195 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
+ + C V Q V + + LP+
Sbjct: 110 ITEITIPCRVTDPQ-LVVTLHEKKGDV---ALPVPYDHQRGF------------------ 147
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQLEC 157
+ Y C+ IG S + + I+ + VV +G+ + L C
Sbjct: 148 ----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC 203
Query: 158 FAGGHPTPRISWRRENNAI---------LPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208
G+ W + SIL IP ED GTY C
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTE 263
Query: 209 GVGKGTR-RNIAVEV 222
V + I + V
Sbjct: 264 SVNDHQDEKAINITV 278
Score = 43.9 bits (103), Expect = 4e-05
Identities = 13/117 (11%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
+S + + + G + L C V + W + + + ++
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE---SGRLVEPVTDFLLDMPY 238
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDN 140
L + + D+G Y C V + +++ +++ V +
Sbjct: 239 --------HIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 120 bits (302), Expect = 1e-32
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKED 198
+ + G+ QL C G P P I W R ++ + S R L + +ED
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQED 74
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-------RLGQALQYDMDLECHVEA 251
G Y C+A N VG+ + + ++ P P +G L+ L
Sbjct: 75 EGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR----LHVMYIG 129
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P PA+ W ++L N+++ +I + +T ++ + + G Y + +N
Sbjct: 130 RPVPAMTWFHGQ--KLLQNSENITIE---NTEHYTHLVMKNVQRKTHA-GKYKVQLSNVF 183
Query: 312 GTSEKTVEL 320
GT + +++
Sbjct: 184 GTVDAILDV 192
Score = 105 bits (264), Expect = 5e-27
Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 31/209 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I ++ +G +L C + P + W + + +I+
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIV---GRPLPDIKWYRFGK--------------ELIQ 50
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
++ + D T+TL V ++ D G Y C + ++ L ++ P
Sbjct: 51 SRKYKMSSD--GRTHTLTVMTEEQEDEGVYTC-IATNEVGEVETSSKLLLQATPQFHPGY 107
Query: 142 T--RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY---RGSILKIPQIT 195
+ G ++L G P P ++W + + +I + L + +
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQ 167
Query: 196 KE-DRGTYYCVAENGVGKGTRRNIAVEVE 223
++ G Y N G + VE++
Sbjct: 168 RKTHAGKYKVQLSNVFGT-VDAILDVEIQ 195
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 118 bits (297), Expect = 7e-32
Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 16/188 (8%)
Query: 38 IGGTVELKCS---VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT--A 92
+G V L V + V W K+ + + L +I + F +D +
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGE-EQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
++T+ L+V + G Y C++ +G +++ + L V +P +S + +
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSV 121
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS--ILKIPQITKEDRGTYYC 204
+ + C P P + W + GS + + K C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 205 VAENGVGK 212
V +N +
Sbjct: 182 VGKNDKEE 189
Score = 80.5 bits (198), Expect = 7e-18
Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 28/196 (14%)
Query: 145 LVVSEGQPVQLECFA---GGHPTPRISWRRENNAI------------------LPTGGSI 183
+ G+ V L + P +SW + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 184 YRGS---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
+R + L + G Y C + G + T++ + V ++V R
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDF 119
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
+ + C V A+P P + W+ + + + + + + +++ K +
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG---SLSVAVDLSLPKPWH 176
Query: 301 GSYICRAANKLGTSEK 316
C N +
Sbjct: 177 LPVTCVGKNDKEEAHG 192
Score = 35.4 bits (81), Expect = 0.018
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
T+S S+ + + C+ +P V W+ + EP P +
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCT---VNAFPHPHVQWL---MPEGVEPAPTAA------- 151
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113
+ D S + + + C
Sbjct: 152 NGGVMKEKD--GSLSVAVDLSLPKPWHLPVTC 181
Score = 34.6 bits (79), Expect = 0.033
Identities = 12/89 (13%), Positives = 19/89 (21%), Gaps = 13/89 (14%)
Query: 245 LECH---VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT-------DTTIRVIT 294
L + V P + W K + F +
Sbjct: 11 LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLV 70
Query: 295 IEKRQY---GSYICRAANKLGTSEKTVEL 320
+ G+Y+CR K L
Sbjct: 71 VTAANISHDGNYLCRMKLGETEVTKQEHL 99
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 118 bits (297), Expect = 1e-31
Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 25/199 (12%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP I ++ V G C A G P P I WR+ + T
Sbjct: 3 GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 186 -GSILKI-PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ--- 240
SIL+I P D Y CVAENGVG + + + P + Q
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 241 ----YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
+ + + C P P I WIK + +V +N YS+ D +++
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLK---------DGFLQIENSR 171
Query: 297 KRQYGSYICRAANKLGTSE 315
+ G Y C A N +GT
Sbjct: 172 EEDQGKYECVAENSMGTEH 190
Score = 116 bits (292), Expect = 6e-31
Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 28/223 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T P I Q Q +GG C+ A+ P ++W K N G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCA---ARGDPPPSIVWRK---N----------GK 45
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV----- 131
+ SR+ + + + D Y C G+ + +SA+ L +
Sbjct: 46 KVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 105
Query: 132 --RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSI 188
PVI+ + V+ G V + C A G+PTP I W + + + +
Sbjct: 106 TPAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF 164
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
L+I +ED+G Y CVAEN +G + + V+ V T
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 116 bits (293), Expect = 2e-31
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 13/187 (6%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G T L+C +Q + P + W++ + + S + D
Sbjct: 17 GLTGTLRCQLQVQGEPPEVHWLRDGQ-------ILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + +Q +D G Y+C V +G +S + + P V+ P L C
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL-EEPEDRTVAANTPFNLSC 128
Query: 158 FAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216
A G P P + W + + L T L +P + ++ C A N G T R
Sbjct: 129 QAQGPPEPVDLLWLQ-DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSR 185
Query: 217 NIAVEVE 223
+ V
Sbjct: 186 TATITVL 192
Score = 105 bits (264), Expect = 3e-27
Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 35/205 (17%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR-------------GSI 188
++ + G L C P + W R+ + + + S
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM-DLEC 247
L+I + D G Y C+ G + V +E P +P +L C
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSC 128
Query: 248 HVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
+ P P ++W+++ L + ++ V + K S+ C
Sbjct: 129 QAQGPPEPVDLLWLQDA--VPLATAPGHGPQR----------SLHVPGLNKT--SSFSCE 174
Query: 307 AANKLGTSEKTVELFESIIPVCPPQ 331
A N G + I V P Q
Sbjct: 175 AHNAKGVTTSRTAT----ITVLPQQ 195
Score = 32.6 bits (74), Expect = 0.13
Identities = 12/112 (10%), Positives = 25/112 (22%), Gaps = 25/112 (22%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P +++ L C Q + ++W++ D + SL +
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGPQRSLHV--- 162
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ C+ S + V P
Sbjct: 163 -------------------PGLNKTSSFSCEAHNAKGVTTSRTATITV-LPQ 194
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 116 bits (293), Expect = 2e-31
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
+S+VV EG E G P P +SW R+ I + + + L IP +TK
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 197 EDRGTYYCVAENGVGKGTRR-NIAVEVEF-APVITVPKPRLGQALQ-YDMDLECHVEAYP 253
+ G Y A NG G+ T + V+ E P + Q + L+ V P
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMTVRQGSQVRLQVRVTGIP 131
Query: 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313
P + + ++ + ++ + IS ++ + G+Y A N +G
Sbjct: 132 TPVVKFYRDG--AEIQSSLDFQISQEGDL-----YSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 314 SEKTVEL 320
+ T EL
Sbjct: 185 ATSTAEL 191
Score = 104 bits (262), Expect = 8e-27
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 33/200 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
PT + Q + G T + + +P V W + +I
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHIS---GFPVPEVSWFR--------------DGQVIST 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR---PPV 136
+ ++ + L + + + ++G Y + G + ++ +L V+ PP
Sbjct: 49 STLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSG---QATSTAELLVKAETAPPN 105
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYR---GSILKIP 192
+S+ V +G V+L+ G PTP + + R+ I + I + L I
Sbjct: 106 FV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIA 164
Query: 193 QITKEDRGTYYCVAENGVGK 212
+ ED GTY A N VG+
Sbjct: 165 EAYPEDSGTYSVNATNSVGR 184
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 121 bits (305), Expect = 3e-31
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----------- 181
+P +I ++ E V L C A G P P I+W+R + T G
Sbjct: 1 QPHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY 241
+ S L I + D G Y C A + +G +++ +++E+AP +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQTIYYSWEGN 116
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+++ C V++ PP +I W ++ VL ++ ++T + + + +G
Sbjct: 117 PINISCDVKSNPPASIHWRRDK--LVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDFG 171
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
Y C A N +GT + L + +P P + EL
Sbjct: 172 RYNCTATNHIGTRFQEYILALADVPSSPYGVKIIEL 207
Score = 112 bits (283), Expect = 4e-28
Identities = 63/362 (17%), Positives = 105/362 (29%), Gaps = 81/362 (22%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
+ + G V L C A+ P + W + + + G + D R ++
Sbjct: 8 KNETTYENGQVTLVCD---AEGEPIPEITWKRAV-----DGFTFTEGDKSL--DGRIEVK 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLV 146
SS+ L +KD++ +D+G Y C+ IG + L + P N T
Sbjct: 58 GQHGSSS--LHIKDVKLSDSGRYDCEAASRIG---GHQKSMYLDIEYAPKFISNQT-IYY 111
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRG 200
EG P+ + C +P I WRR+ + + + IL+I + D G
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260
Y C A N +G + + + P P V I
Sbjct: 172 RYNCTATNHIGT-RFQEYILALADVP--------------------------SSPYGVKI 204
Query: 261 KEDTQQVLT---------NN---QHYSI--------SHFATADEFTDTTIRVITIEKRQY 300
E +Q HY + T + + +E
Sbjct: 205 IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTT 264
Query: 301 GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTSWEPQR 360
A N G + + +PV P P + + S Q
Sbjct: 265 YEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL-------SITKQD 317
Query: 361 KQ 362
Sbjct: 318 DG 319
Score = 60.6 bits (147), Expect = 2e-10
Identities = 50/349 (14%), Positives = 90/349 (25%), Gaps = 98/349 (28%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P G + + C V+ + W + ++ +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR--------------DKLVLPAKNT 146
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPP------V 136
++ + L + + D G Y C IG E L + P
Sbjct: 147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG---TRFQEYILALADVPSSPYGVK 203
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHP----------TPRISWRRENNAILPTGGSIYRG 186
I + S + VS +P GG P W+ + + T
Sbjct: 204 IIELSQTTAKVSFNKP----DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQT------- 252
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKG----------------TRRNIAVEVEFAPVITV 230
++ + + A NG G+G + +I + +
Sbjct: 253 -MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 231 ----PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286
L+Y V+ E ++V N H + H
Sbjct: 312 SITKQDDGGAPILEY------IVKYRSKDKEDQWLE--KKVQGNKDHIILEHL---QWTM 360
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+++ AAN+LG SE TV F +P+
Sbjct: 361 GYEVQI-------------TAANRLGYSEPTVYEF-------SMPPKPN 389
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 117 bits (294), Expect = 4e-31
Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 18/214 (8%)
Query: 124 SAEVDLQVRRPPVIS---DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ +R P + R V V+ C AGG+P P + W +
Sbjct: 5 FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64
Query: 181 GSIYR-----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV----EFAPVITVP 231
L + + D+G Y CV EN G ++V P++
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAG 123
Query: 232 KPRLGQALQ-YDMDLECHVEAYPPPAIVWIKED----TQQVLTNNQHYSISHFATADEFT 286
P + D++ C V + P I WIK ++ + + + +
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + G YIC+ +N +G + ++ L
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 95.7 bits (238), Expect = 4e-23
Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 41/211 (19%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLII 80
T T + TV+ +C A P + W+K +
Sbjct: 19 TNTEKMEKRLHAVPAANTVKFRCP---AGGNPMPTMRWLKNGK---------------EF 60
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR--RPPV 136
+ Y + ++L+++ + +D G Y C V G N + +D+ R P+
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVVERSRHRPI 119
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--------------- 181
+ + G V+ C P I W + G
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ +L + +T+ D G Y C N +G+
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Score = 48.7 bits (116), Expect = 7e-07
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIR 81
R + + +GG VE C V Y+ P I W+K ++ P +++
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVI 137
S S+ L + ++ E DAG Y C+V IG + L V
Sbjct: 176 HSGINS-----SNAEVLALFNVTEADAGEYICKVSNYIGQ---ANQSAWLTVLPKQQA 225
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 119 bits (299), Expect = 5e-31
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 19/199 (9%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI------YRGS 187
P + R+L V L C GHP P + W R+ I+ G
Sbjct: 4 APHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-----D 242
L I +T +D Y A N G + ++EVE I +PK G +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ ++ P P I W K ++ NN HY + T + +E++ G
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQ--DLIDNNGHYQVIV--TRSFTSLVFPN--GVERKDAGF 175
Query: 303 YICRAANKLGTSEKTVELF 321
Y+ A N+ G +KTVEL
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194
Score = 99.8 bits (249), Expect = 4e-24
Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 30/218 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + L C V V W + G +I +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-------------QGKEIIADGLK 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI----SDN 140
+ I+ + + L++ + + DA Y+ + +S L+V P I +
Sbjct: 52 YRIQ-EFKGGYHQLIIASVTDDDATVYQVRAT-NQGGSVSGTASLEVEVPAKIHLPKTLE 109
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQIT 195
++ G+ V ++ G P P I+W++ + I G S++ +
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
++D G Y A+N G ++ + ++ V VP P
Sbjct: 170 RKDAGFYVVCAKNRFGI-DQKTVELD-----VADVPDP 201
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 114 bits (287), Expect = 2e-30
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 28/185 (15%)
Query: 39 GGTVELKCSVQYAQDYPVI--WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G + L C Y + W+ + P+ I+ + +
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEF-----PVFITMDKRRFVSQT-----------NG 66
Query: 97 TLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR-------RPPVISDNSTRSLVV 147
L + +++ +D G Y C V + S + L P I + +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYA 125
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
GQ V LECFA G+P P I WR+ + T G++LKI I ED G Y C AE
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 208 NGVGK 212
N GK
Sbjct: 186 NIRGK 190
Score = 98.8 bits (246), Expect = 2e-24
Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 34/196 (17%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPR--ISWRRENNAILPTGGS----IYRGSILKIPQITKE 197
+ V EG+ + L C H W + T L I +
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 198 DRGTYYCVAENGVGKGTR---------RNIAVEVEFAPVITVPKP----RLGQALQYDMD 244
D+G Y C + + + I V +GQ +
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVT---- 132
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
LEC P P I W K + + + S S +++ I+ G Y
Sbjct: 133 LECFALGNPVPDIRWRKVL--EPMPSTAEISTS---------GAVLKIFNIQLEDEGIYE 181
Query: 305 CRAANKLGTSEKTVEL 320
C A N G + +
Sbjct: 182 CEAENIRGKDKHQARI 197
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 31/128 (24%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKV 66
L + TT I ++ +G V L+C A P + W KV
Sbjct: 99 IPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF---ALGNPVPDIRWRKVLE--- 152
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKIS 124
P+ + + + + L + +IQ D G Y C+ I G K
Sbjct: 153 ----PMPSTAEISTSGA-------------VLKIFNIQLEDEGIYECEAENIRG---KDK 192
Query: 125 AEVDLQVR 132
+ + V+
Sbjct: 193 HQARIYVQ 200
Score = 39.1 bits (91), Expect = 0.001
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 245 LECHVEAYPPPAIV--WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
L C + P + W+ + +T ++ +S T+ + + +E G+
Sbjct: 28 LLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ-------TNGNLYIANVEASDKGN 80
Query: 303 YICRAANKLGTSEKTVELF 321
Y C ++ T +
Sbjct: 81 YSCFVSSPSITKSVFSKFI 99
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 114 bits (288), Expect = 2e-30
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 19/198 (9%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP + + G C A G P P+I W ++ + +
Sbjct: 3 GETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 186 GSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ---- 240
GS+L+I + T D Y CVA N VG+ + + V I P + Q
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 241 ---YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ C P P I W K D V T+N + I + +++ E+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSES---IGALQIEQSEE 176
Query: 298 RQYGSYICRAANKLGTSE 315
G Y C A N GT
Sbjct: 177 SDQGKYECVATNSAGTRY 194
Score = 100 bits (251), Expect = 4e-25
Identities = 45/223 (20%), Positives = 74/223 (33%), Gaps = 40/223 (17%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T + P + +Q GG C P ++W K +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQAT---GDPRPKIVWNKKGKK------------ 46
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQV--IIGINNKISAEVDLQVRR 133
+ + RF + S L ++ ++ D Y C +G +IS L V R
Sbjct: 47 ---VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG---EISVSTRLTVLR 100
Query: 134 PPVIS------DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--- 184
I D + VV + + C A G+P P I+W ++ + + +
Sbjct: 101 EDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ 160
Query: 185 ----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L+I Q + D+G Y CVA N G + V
Sbjct: 161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 22/135 (16%)
Query: 221 EVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
E P T P G C P P IVW K ++V
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVAS----FICQATGDPRPKIVWNK-KGKKVSNQRFEVIE 56
Query: 277 SHFATADEFTDTTIRVITIEKRQY----GSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
F D + V+ I+ + Y C A+N +G + L + P+
Sbjct: 57 --------FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL-TVLREDQIPRG 107
Query: 333 QPSELLPLRNVNMAV 347
P+ + + +
Sbjct: 108 FPTIDMGPQLKVVER 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 116 bits (291), Expect = 1e-29
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 10/225 (4%)
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
L + +E G ++ ++ + P + + V G V L C
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKV--QVPNASVDVGDDVLLRCQ 181
Query: 159 AGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGKGTR 215
G + W T + + +R C AEN VG+
Sbjct: 182 VEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AE 240
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS 275
++ V V F + + + + V+ P P++ W+ + T+
Sbjct: 241 VSVQVNVSFPASVQLHTAVE----MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTE 296
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
A + +R+ G+Y AAN G + ++
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
Score = 87.9 bits (217), Expect = 2e-19
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 39/215 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
PT+ D+G V L+C V+ W+ + S
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL-----------------EQSA 201
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISDNST 142
++ S L + + C +G V + V P +
Sbjct: 202 TVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA---EVSVQVNVSFPASVQL--- 255
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-----------GSIYRGSILKI 191
E + G P P + W + + T R L++
Sbjct: 256 --HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
Q T + G Y +A N G+ +I P
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347
Score = 35.9 bits (82), Expect = 0.016
Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 16/120 (13%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSS 77
+ Q + Q + SV Q P + W+ L ++
Sbjct: 241 VSVQVNVSFPASVQLHTAVEMHHWCIPFSVD-GQPAPSLRWLFNGS-----VLNETS--- 291
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPP 135
I + L + + G Y G + SA + P
Sbjct: 292 -FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFMDNP 347
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 115 bits (289), Expect = 1e-29
Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 63/332 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P + D ++ +C W K
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSK--------------DYVSTEDSP 47
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-----------IIGINNKISAEVDLQVR 132
R + + + KD+ D G Y C V I K + + +
Sbjct: 48 RLEVESK--GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS----- 187
P V + ++ +GQ ++++ I
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165
Query: 188 -ILKIPQITKEDRGTYYCVAENGVGKGT-----------RRNIAVEVEFAPVITVPKPRL 235
+ + ++ ED GTY ++G + E + I P
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 236 GQALQY------DMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288
+ L + ++ L+C V IVW K++ + ++ ++ +
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKD-------GIC 276
Query: 289 TIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T+ + K+ G Y + G + ++L
Sbjct: 277 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 97.4 bits (242), Expect = 5e-23
Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 29/251 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSIL 189
P + ++ + EC P SW ++ + + + +
Sbjct: 3 DPFTKEVV-VNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVE-----VEFAPVITVPKPRLGQALQYDMD 244
+ +D G Y C + G + I E + + P + L ++
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 245 -------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ + +I + + + Y + +T I + +EK
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNE--KEIFEGPKYKMHIDR------NTGIIEMFMEK 172
Query: 298 RQY---GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT 354
Q G+Y + + T+ TV L + + + +R +
Sbjct: 173 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 232
Query: 355 SWEPQRKQLNC 365
L C
Sbjct: 233 VTGECNVLLKC 243
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 113 bits (285), Expect = 1e-29
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 23/233 (9%)
Query: 124 SAEVDLQVRRPPVIS--DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ + P + L V V+ C A G+PTP ISW +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 182 -----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPK 232
++ L + + DRG Y CV EN G R+ ++V P++
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120
Query: 233 PRLGQALQ-YDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHY--SISHFATADEFT 286
P A+ D++ C V + P I W+K + +V + Y + + +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLP 339
D +R+ + +R G Y+CRA N +G +EK L V P+ EL+
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS-----VHGPRAAEEELVE 228
Score = 100 bits (251), Expect = 6e-25
Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 47/241 (19%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
+ TV +C A P + W+K R R +R
Sbjct: 23 KLLAVPAANTVRFRCP---AAGNPTPSISWLKNGR-------EFRGEH----RIGGIKLR 68
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP--PVISDNSTRS 144
+ ++L+++ + +D G Y C V G + + +D+ R P P++ +
Sbjct: 69 HQQ----WSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPAN 123
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----------------SIYRGSI 188
G V+ C P I W + G S+
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH 248
L++ +++ D G Y C A N +G + + V +A + H
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVEADEAGS----VHHH 238
Query: 249 V 249
Sbjct: 239 H 239
Score = 56.1 bits (135), Expect = 3e-09
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIR 81
R + + Q +G VE C V Y+ P I W+K ++ P + +
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGP---DGTPYVT 168
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
+ I + L + ++ E D G Y C+ IG+ L V P +
Sbjct: 169 VLKSWISESV-EADVRLRLANVSERDGGEYLCRATNFIGV---AEKAFWLSVHGPRAAEE 224
Query: 140 NSTRSLVVSEGQPVQLEC 157
+V + +
Sbjct: 225 E-----LVEADEAGSVHH 237
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 112 bits (280), Expect = 3e-29
Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 18/199 (9%)
Query: 39 GGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA-------- 86
G T L C + W+ + I S I D+ +
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV 146
D S ++ V ++Q +D G Y+C+V + + L V P +
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKFLLTVLVKPSGTRCFV-DGS 132
Query: 147 VSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYY 203
G +L+C G + W++ +++ + ++ + + E GTY
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYS 192
Query: 204 CVAENGVGKGTRRNIAVEV 222
C +N VG + + ++V
Sbjct: 193 CTVQNRVGS-DQCMLRLDV 210
Score = 92.8 bits (230), Expect = 3e-22
Identities = 39/235 (16%), Positives = 65/235 (27%), Gaps = 55/235 (23%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP----RISWRR------------- 171
L + P + + ++G+ L C P I W
Sbjct: 1 LSITTPE-------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53
Query: 172 --ENNAILPTGGSIYRG-------------SILKIPQITKEDRGTYYCVAENGVGKGTRR 216
+ I +G + + + + D GTY C + G +
Sbjct: 54 LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN-K 112
Query: 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYS 275
+ V P T + + D L+C + P W K Q +
Sbjct: 113 KFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA- 171
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
E T I V G+Y C N++G+ + + L V PP
Sbjct: 172 --------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD-----VVPP 213
Score = 44.7 bits (105), Expect = 1e-05
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 28/115 (24%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P+ + + ++IG +LKC + W K+ + + T +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEP--KEGSLPLQFEWQKLS-----DSQTMPTPWLAEMT 174
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP 134
+ VK+ +G Y C V +G + L V P
Sbjct: 175 SP-------------VISVKNASSEYSGTYSCTVQNRVG---SDQCMLRLDVVPP 213
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 113 bits (283), Expect = 4e-29
Identities = 43/305 (14%), Positives = 90/305 (29%), Gaps = 57/305 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
T + ++ ++ + CS+ + V D+ P T +
Sbjct: 4 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ----RLNPTVTYGN---- 55
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG-INNKISAEVDLQVRRPPVISDN 140
D+ S+ ++ V E C VI+G + + V + P +
Sbjct: 56 --------DSFSAKASVSVTAEDE-GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 106
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
VSEG V ++C A ++ + + L + +++
Sbjct: 107 KPE---VSEGTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGR 155
Query: 201 TYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPP 255
++ C A V + + V + P + C P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 215
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ +K+ T + +T+ + G+Y+CRA + G
Sbjct: 216 ELKCLKDGTFPLPIG--------------------ESVTVTRDLEGTYLCRARSTQGEVT 255
Query: 316 KTVEL 320
+ V +
Sbjct: 256 REVTV 260
Score = 98.6 bits (245), Expect = 7e-24
Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 42/209 (20%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
T P + I + G V +KC P + ++
Sbjct: 94 TIYSFPAPNVILTKPEVSEGTEVTVKCEAH-----PRAKVTLNGVPAQPL---------- 138
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPPV 136
LL+K E + + C + + ++ + +L+V P
Sbjct: 139 -------------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 137 ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + + E C A G+P P + ++ LP G + +T
Sbjct: 186 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVT 236
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
++ GTY C A + G+ R + V V
Sbjct: 237 RDLEGTYLCRARSTQGE-VTREVTVNVLS 264
Score = 32.3 bits (73), Expect = 0.19
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 12/113 (10%)
Query: 225 APVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
P + P+ + + C ++ P + E + +Q + + D
Sbjct: 6 PPQLVSPRVLEVDTQG----TVVCSLDGLFPVS-----EAQVHLALGDQRLNPTVTYGND 56
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
F+ +T E C + E + P P ++
Sbjct: 57 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP--APNVILTK 107
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 107 bits (268), Expect = 5e-28
Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 37/201 (18%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD 82
+ +V L C + + + W +P T S +
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGN-----LIPTHTQPSYRFK- 57
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNST 142
D+G Y CQ +S V L V ++ T
Sbjct: 58 --------------------ANNNDSGEYTCQTG---QTSLSDPVHLTVLFEWLVL--QT 92
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
L EG+ + L C + P ++++ + + + IPQ G
Sbjct: 93 PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ----KFSHLDPTFSIPQANHSHSGD 148
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
Y+C G + + + + V
Sbjct: 149 YHCTGNIGYTLFSSKPVTITV 169
Score = 82.9 bits (205), Expect = 4e-19
Identities = 29/193 (15%), Positives = 48/193 (24%), Gaps = 37/193 (19%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
V+ + V + V L C P I W N I +
Sbjct: 5 AVLKLEP-PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------SYRFK 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVE 250
D G Y C + + V F ++ + G+ + L CH
Sbjct: 58 ANNNDSGEYTCQTGQTSLSDP---VHLTVLFEWLVLQTPHLEFQEGETI----MLRCHSW 110
Query: 251 A-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
P + + + + + +SI + G Y C
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHS----------------GDYHCTGN 154
Query: 309 NKLGT-SEKTVEL 320
S K V +
Sbjct: 155 IGYTLFSSKPVTI 167
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 26/112 (23%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLII 80
+ + + G T+ L+C + V + + + + I
Sbjct: 84 LFEWLVLQTPHLEFQ-EGETIMLRCHSWKDKPLVKVTFFQ-NGKSQK---FSHLDPTFSI 138
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
+ +G Y C IG S V + V+
Sbjct: 139 PQ--------------------ANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 32.9 bits (75), Expect = 0.081
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 226 PVITVPKPRLGQALQYD-MDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATAD 283
V+ + +P LQ D + L C P I W + + T+ Q
Sbjct: 5 AVLKL-EPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQPSYR------- 55
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
G Y C+ + + + + + P + E
Sbjct: 56 ---------FKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQE 99
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 107 bits (267), Expect = 2e-27
Identities = 41/191 (21%), Positives = 62/191 (32%), Gaps = 5/191 (2%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDR-NKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V L W K + E S++ ++ R S +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE-IIYSNGS 72
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
LL + I D G Y + + A V V +P + V E V L C
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+ I W + ++ T SIL+I I +ED G Y C N V
Sbjct: 133 LSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Query: 216 RNIAVEVEFAP 226
+I +++ F P
Sbjct: 192 NSIKLDIIFDP 202
Score = 71.2 bits (174), Expect = 1e-14
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 32/196 (16%)
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPT--------------------GGSIYRG 186
V+E V L +W + N + IY
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD-MDL 245
L IT +D G Y + + T+ + V + + D + L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C I W+ Q L + ++S ++ +R+ I++ G Y C
Sbjct: 131 TCLSND-IGANIQWLFNS--QSLQLTERMTLSQ-------NNSILRIDPIKREDAGEYQC 180
Query: 306 RAANKLGTSE-KTVEL 320
+N + +++L
Sbjct: 181 EISNPVSVRRSNSIKL 196
Score = 38.9 bits (90), Expect = 0.001
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 11/124 (8%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS---------HFATADEFTDTTIRVITI 295
L H A W K +T + + + + +++ ++ I
Sbjct: 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78
Query: 296 EKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
+ G Y ++ + F PV P Q + +V
Sbjct: 79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV--KELDSVTLTCLSND 136
Query: 356 WEPQ 359
Sbjct: 137 IGAN 140
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 106 bits (265), Expect = 2e-27
Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 12/179 (6%)
Query: 146 VVSEGQPVQLECFAGGHPTPRIS--WRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY 203
V G + L C T W + + G + + + G Y
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYS 65
Query: 204 CVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIKE 262
CV +++ P + K L C E+ PP W K
Sbjct: 66 CVFLPEPMG----TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 263 DTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ F ++ + I + +E G Y C + G+ + + L
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA-DPGQYRCNGTSSKGSDQAIITL 179
Score = 88.9 bits (220), Expect = 3e-21
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 39/201 (19%)
Query: 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93
++D+G + L CS+ V + + V G +
Sbjct: 8 TVEDLGSKILLTCSLN-DSATEVTGHRWLKGGVVLKEDALPGQKTEFKV----------- 55
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ G Y C + ++Q+ PP + S ++EG+
Sbjct: 56 ---------DSDDQWGEYSCVF----LPEPMGTANIQLHGPPRVKAVK-SSEHINEGETA 101
Query: 154 QLECFAGGHP-TPRISWRRENNAILPTGGSIYRG----------SILKIPQIT-KEDRGT 201
L C + P +W + ++ + S L I + + D G
Sbjct: 102 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
Y C + G + I + V
Sbjct: 162 YRCNGTSSKGS-DQAIITLRV 181
Score = 44.2 bits (104), Expect = 2e-05
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 25/116 (21%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
P + + + + G T L C ++ P W K+ + E + GS
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDS---EDKALMNGSE--- 134
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQVIIGINNKI---SAEVDLQVR 132
SRF + ++ L ++++ E D G YRC + A + L+VR
Sbjct: 135 --SRFFVS--SSQGRSELHIENLNMEADPGQYRCNG----TSSKGSDQAIITLRVR 182
Score = 37.7 bits (87), Expect = 0.003
Identities = 16/113 (14%), Positives = 25/113 (22%), Gaps = 21/113 (18%)
Query: 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAI--VWIKEDTQQVLTNNQHYSISHFATAD 283
V T + LG + L C + W+K VL D
Sbjct: 4 TVFTTVED-LGSKIL----LTCSLNDSATEVTGHRWLKGG--VVLKE------------D 44
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
Q+G Y C + + + +E
Sbjct: 45 ALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE 97
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 101 bits (253), Expect = 9e-27
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILK 190
+P +++ RS V G V C A P + W R +N LP+ + G L
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LT 65
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRR-NIAVEV 222
I + D GTY C N + V+V
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 52.1 bits (125), Expect = 5e-09
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 226 PVITVPKPRLGQALQ-YDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
++TV + R D+ C ++ P +VW + ++ + +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF--------- 60
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + ++ G+Y+C +N + T L
Sbjct: 61 ---NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 41.3 bits (97), Expect = 3e-05
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 28/119 (23%)
Query: 18 LTTAQRTPTIS-YISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTG 75
L + ++ + Q G V C+ + + W ++ LP
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH----NGKLP---- 54
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVR 132
S + + L ++++Q +DAG Y C G N L V+
Sbjct: 55 SRAMDFNG-------------ILTIRNVQPSDAGTYVC---TGSNMFAMDQGTATLHVQ 97
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 109 bits (272), Expect = 3e-26
Identities = 40/335 (11%), Positives = 95/335 (28%), Gaps = 30/335 (8%)
Query: 32 QEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
+ +D+ G+V C++ + + + + + + G + R +
Sbjct: 225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ 284
Query: 91 TASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISDNSTRSLVVS 148
++++++ +++ DAG Y C + + S +
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-------------RGSI------- 188
G V + C + I + + R S+
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 189 ---LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR--LGQALQYDM 243
+ + Q+T D G Y+C+ T I + + LG+ L+
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464
Query: 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
C +Y W Q + + ++ S + + ++ + + + G Y
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524
Query: 304 ICRAANKLGTSEK-TVELF-ESIIPVCPPQTQPSE 336
C E V + E ++
Sbjct: 525 WCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAK 559
Score = 105 bits (262), Expect = 7e-25
Identities = 47/318 (14%), Positives = 96/318 (30%), Gaps = 46/318 (14%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G +V + C W + L S G R + + T
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
+ + + + + D+G Y+C + I + +S +V L+V + P + ++ T+ V G+ V +
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTI 132
Query: 156 ECFAGGHPTPRISWRRENNAILPT---------------------GGSIYRGSILKIPQI 194
C + + + P G+ + I Q+
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---------RLGQALQYDMDL 245
D G Y C A + ++N ++V V + LG +
Sbjct: 193 RLSDAGQYLCQAGDDSN-SNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GS 302
C + +V + + ++ F+ + I + G
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGR-ILLNPQDKDGSFS------VVITGLRKEDAGR 304
Query: 303 YICRAANKLGTSEKTVEL 320
Y+C A + E +
Sbjct: 305 YLCGAHSDGQLQEGSPIQ 322
Score = 91.2 bits (225), Expect = 3e-20
Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 21/232 (9%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPI--STGSSLIIR 81
TI G +V + C W + + + S G
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ R ++ + + T+T+++ + DAG+Y C + + E+ + P + +
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN 451
Query: 142 TRSLVVSEGQPVQLECF----AGGHPTPRISWRRENNAILP-TGGSIYRGSI-------- 188
G+ +++ C + W LP + +
Sbjct: 452 VT---AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQA 238
L + +T+ D G Y+C + G G + V VE L +A
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA 560
Score = 71.2 bits (173), Expect = 1e-13
Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 34/232 (14%)
Query: 143 RSLVVSEGQPVQLECF---AGGHPTPRISWRREN-----NAILPTGGSIY-----RGSI- 188
+ EG V + C+ + R W R+ ++ + G + R ++
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 189 ---------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQAL 239
+ I Q++++D G Y C +G ++++EV P + L
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSI-----SHFATADEFTDTTIRV 292
+ + C + ++ + VL + + + T +
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 293 ITIEKRQY---GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
+ I + + G Y+C+A + +++K +L +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFH 238
Score = 62.7 bits (151), Expect = 7e-11
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 39 GGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G T+++ C Y W K + S S+ + D S +
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQ------ALPSQDEGPSKAFVNCDENSRLVS 510
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + + D G+Y C V G +A V + V +++ E
Sbjct: 511 LTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS---LAKADAAPDEK 567
Score = 36.1 bits (82), Expect = 0.020
Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 21/134 (15%)
Query: 245 LECHVE---AYPPPAIVWIKE------------DTQQVLTNNQHYSISHFATADEFTDTT 289
+ C+ W ++ + ++++F F
Sbjct: 20 ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV--- 76
Query: 290 IRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349
+ + + + G Y C V L S P T+ + R V I
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTV---TIN 133
Query: 350 AEQPTSWEPQRKQL 363
T +RK L
Sbjct: 134 CPFKTENAQKRKSL 147
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 105 bits (262), Expect = 3e-26
Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
+Q P ++ S + +G +V + C VQ ++ V W+ + S+
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 78 LIIRDSRFAIRY----DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L + RF R DT + +LL++D+Q+ D G Y C++ + N + + +++
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK-NESMVMKKPVELWV 120
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR---ISWRREN----------------- 173
P R L V G Q+ C R ++W +
Sbjct: 121 LP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 174 -----------NAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
N + TG +K+ + + D+G Y C G + +R+ I + V
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHV 235
Query: 223 EFAPVITVPKP 233
P
Sbjct: 236 VQDEFQRTISP 246
Score = 74.9 bits (183), Expect = 2e-15
Identities = 41/259 (15%), Positives = 70/259 (27%), Gaps = 54/259 (20%)
Query: 141 STRSLVVSEGQPVQLECF---AGGHPTPRISWRRE--------------NNAILPTGGSI 183
S+ L V G+ V + C R+ W +N +PTG
Sbjct: 11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQ 70
Query: 184 YRGSI----------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
R + L + + K D G Y C VE+ V+
Sbjct: 71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVM-KKPVELW---VLPEEPR 126
Query: 234 RLGQALQYDMDLECHVEAYPPP---AIVWIKED-----TQQVLTNNQHYSISHFATADEF 285
L + + C +++ + W+ + VL+ + + F + F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 286 TDTTIRVITIEKRQY------------GSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+ I + G Y C S KT+ L + Q
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL---HVVQDEFQRT 243
Query: 334 PSELLPLRNVNMAVIFAEQ 352
S P ++ Q
Sbjct: 244 ISPTPPTDKGQQGILNGNQ 262
Score = 36.8 bits (84), Expect = 0.007
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 24/131 (18%)
Query: 226 PVITVPKP----RLGQALQYDMDLECHV---EAYPPPAIVWIKEDTQQVLTNNQHYSIS- 277
P +TV P +G+ + + C V E + W+ + + + S
Sbjct: 6 PGLTVSSPQLRVHVGE----SVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 278 ------------HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325
H D ++ + ++K G Y C K + + ++
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
Query: 326 PVCPPQTQPSE 336
P P +
Sbjct: 122 PEEPRDLRVRV 132
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 102 bits (257), Expect = 5e-26
Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 24/200 (12%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS------ 182
Q PP I + L+VS+G+P L C A G PTP I W + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 183 IYRGSILKIPQI-----TKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLG 236
+ L +I ++ D G Y CVA N +G+ + ++EV +
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122
Query: 237 QALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
A+ +EC +P P I W K D + ++ +I + +
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITIR---------GGKLMITYT 172
Query: 296 EKRQYGSYICRAANKLGTSE 315
K G Y+C N +G E
Sbjct: 173 RKSDAGKYVCVGTNMVGERE 192
Score = 101 bits (252), Expect = 2e-25
Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 19/213 (8%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I + I G L C A+ P + W K +V +++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLP 65
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV-RRPPVISDN 140
++ D G Y C + +S + L+V N
Sbjct: 66 SGSLFFL--------RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKED 198
++V+ G+P +EC GHP P ISW+++ + + I RG L I K D
Sbjct: 118 P-SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSD 176
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
G Y CV N VG+ + V P
Sbjct: 177 AGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209
Score = 49.8 bits (119), Expect = 3e-07
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 20/122 (16%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGS 76
L A + + +G ++C P I W K D + P+
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGS------PLDDKD 157
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
I L++ +++DAG Y C + + S +L V P
Sbjct: 158 ERITIRG------------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 137 IS 138
Sbjct: 206 FV 207
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 103 bits (257), Expect = 6e-26
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GS 187
+ P I + LVV + +P L C G P P I W ++ + +R G+
Sbjct: 8 QSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 I---LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLGQALQ-YD 242
+ + ++D G Y+CVA+N VG+ R+ ++++ V P+ + +
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGET 125
Query: 243 MDLECH-VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
LEC + P P ++WIK+ L + + S + + + +E G
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 302 SYICRAANKLGTSE 315
+Y C A N +GT E
Sbjct: 184 NYKCIAQNLVGTRE 197
Score = 94.9 bits (236), Expect = 5e-23
Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 32/227 (14%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPIST 74
L ++P I + + L C + P + W K + P+ST
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCK---VEGKPEPTIEWFK---DGE----PVST 52
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR 132
+++ + + ++ +E D G Y C +G A + + V
Sbjct: 53 NE-----KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENNAILPTGGS--------- 182
R + V++G+ LEC G P P + W ++ +
Sbjct: 108 RDDFRV--EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
I G L I + D G Y C+A+N VG + V+
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
Score = 49.5 bits (118), Expect = 4e-07
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGS 76
L A ++ G T L+C P + W+K PL +
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG-----VPLD-DLKA 155
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
SR I LL+ +++ D G Y+C + + S+ L V+
Sbjct: 156 MSFGASSRVRI-----VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210
Query: 137 ISDNS 141
+
Sbjct: 211 AHHHH 215
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 101 bits (253), Expect = 1e-25
Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
+ D+G +V L+C + + ++ KV + + + ++ +
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE-------Q 61
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
+ +Q D+G YRC VI L V+ TR L V
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVI---CGAAWDYKYLTVKVKASYMRIDTRILEVPGT 118
Query: 151 QPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG--SILKIPQITKEDRGTYYCVAEN 208
VQL C A G+P +SW+ + + G + + ++ + + C+ N
Sbjct: 119 GEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 178
Query: 209 GVGKGTRRNIAVEVEFAPVITVPK 232
+ ++ VP+
Sbjct: 179 AHM-KELTSAIIDPLSRMEPKVPR 201
Score = 91.3 bits (226), Expect = 8e-22
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 28/201 (13%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG-------------SILKIP 192
V G V LEC + R + + S+ ++ IP
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD-MDLECHVEA 251
+ D G Y C+ G + + V+ R+ + + L C
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQARG 129
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
YP + W + + SH T + T V+ ++ + ++ C N
Sbjct: 130 YPLAEVSWQN--------VSVPANTSHIRTPEGLYQVTS-VLRLKPQPSRNFSCMFWNAH 180
Query: 312 GTSEKT--VELFESIIPVCPP 330
+ ++ + P P
Sbjct: 181 MKELTSAIIDPLSRMEPKVPR 201
Score = 42.7 bits (100), Expect = 6e-05
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 228 ITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS--ISHFAT 281
+T PK +G + LEC + + I+ Q+V + S +
Sbjct: 5 VTAPKEVYTVDVGS----SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE 60
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ +++ R G Y C K + + +
Sbjct: 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR 111
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 100 bits (249), Expect = 1e-24
Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 18/210 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP--ISTGSSLIIRDSRFAIR-----YDT 91
G + ++C + + + V + + + L ++ S + R
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
+ L + D++ DAG YRC + G + ++V P + +V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG--GADYKRITVKVNAPYNKINQRI-LVVDPVTS 132
Query: 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG-------SILKIPQITKEDRGTYYC 204
+L C A G+P + W ++ +L + ++ +I +YC
Sbjct: 133 EHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYC 192
Query: 205 VAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
+ + P+ P R
Sbjct: 193 TFRRLDP-EENHTAELVIPELPLAHPPNER 221
Score = 82.7 bits (204), Expect = 1e-18
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 33/217 (15%)
Query: 144 SLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAIL---------PTGGSIYRG--- 186
VV G + +EC + W E+ I+ S YR
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69
Query: 187 ----------SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG 236
+ L+I + +D G Y C+ G R I V+V + +
Sbjct: 70 LLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR--ITVKVNAPYNKINQRILVV 127
Query: 237 QALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
+ + +L C E YP ++W D Q + + ++ ++ + T + I
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT---TTTNSKREEKLFNVTSTL-RIN 183
Query: 297 KRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+ C T EL +P+ P +
Sbjct: 184 TTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 220
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 99 bits (248), Expect = 2e-24
Identities = 45/239 (18%), Positives = 64/239 (26%), Gaps = 48/239 (20%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVD------------RNKVTEP 69
T+ E GGTVEL CS Q A D + W+K N E
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 70 LPISTGSSLIIRDSRFAIRYDTASST-YTLLVKDIQETDAGYYRCQV-------IIGINN 121
L S F R A+ TL + + D G Y CQV G++
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
K + ++ + V EG + + C ++W
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 182 SIYRGSI-------------------------LKIPQITKEDRGTYYCVAENGVGKGTR 215
Y+ L I D G +C G G+
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241
Score = 80.0 bits (196), Expect = 3e-17
Identities = 32/250 (12%), Positives = 53/250 (21%), Gaps = 65/250 (26%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC---FAGGHPTPRISWRRENNAILPTGGSIYR 185
+ VR + V G V+L C A P ISW + + T
Sbjct: 3 MTVRTTH-------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGN 55
Query: 186 ---------------------------------GSILKIPQITKEDRGTYYCVAENGVGK 212
L++ + +D G Y+C +
Sbjct: 56 YNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115
Query: 213 GTRRNIAVEVEFAPVITVPKPRLGQALQY--------DMDLECHVEAYPPPAIVWIKEDT 264
A V P + + D+ + C + W T
Sbjct: 116 TEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175
Query: 265 QQVLTNNQHYSISHFATADEFTDTTIRV-----------ITIEKRQY---GSYICRAANK 310
Y T + + + I + G C A
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235
Query: 311 LGTSEKTVEL 320
G +
Sbjct: 236 QGELDADRSS 245
Score = 31.8 bits (71), Expect = 0.27
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 31/140 (22%)
Query: 228 ITVPKPRLGQALQYDMDLECHVEA---YPPPAIVWIKED--TQQVLTNNQHYSISHF--- 279
+ + ++L C + PP I W+K + +Y+
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 280 -----------------ATADEFTDTTIRVITIEKRQYGSYICRAANK-----LGTSEKT 317
A+ T+R+ + + G Y C+ A G K+
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 318 VELF-ESIIPVCPPQTQPSE 336
V L P +E
Sbjct: 125 VVLKVTGHTPSNNVHVSTAE 144
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 103 bits (257), Expect = 2e-24
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 57/305 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQ---YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
T + ++ ++ + CS+ + V D+ R
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ-----------------R 231
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDN 140
+ + + S + ++ C VI+G ++ V + P +
Sbjct: 232 LNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
VSEG V ++C A ++ + + L + +++
Sbjct: 292 KPE---VSEGTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGR 340
Query: 201 TYYCVAENGVG---KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPP 255
++ C A V + + V + P + + C P P
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 400
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ +K+ T + T+ + G+Y+CRA + G
Sbjct: 401 ELKCLKDGTFPLPIGESV--------------------TVTRDLEGTYLCRARSTQGEVT 440
Query: 316 KTVEL 320
+ V +
Sbjct: 441 REVTV 445
Score = 97.2 bits (241), Expect = 2e-22
Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 42/209 (20%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
T P + I + G V +KC V V +
Sbjct: 279 TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA--KVTLNGVPAQPLGPRA--------- 327
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV---IIGINNKISAEVDLQVRRPPV 136
LL+K E + + C + G + +L+V P
Sbjct: 328 -----------------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 370
Query: 137 ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + + E C A G+P P + ++ LP G + +T
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVT 421
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
++ GTY C A + G+ T R + V V
Sbjct: 422 RDLEGTYLCRARSTQGEVT-REVTVNVLS 449
Score = 91.1 bits (225), Expect = 3e-20
Identities = 38/317 (11%), Positives = 79/317 (24%), Gaps = 43/317 (13%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
+ I GG+V + CS Q + K
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELL---------------------LP 45
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
++ + ++ + C + + +A+ L V P + + G+
Sbjct: 46 GNNRKVYELSNV--QEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
Query: 152 PVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKED-RGTYYCVAE 207
+ L C GG P + R + + + ++ + C E
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE--------CHVEAYPPPAIVW 259
+ + T P L LE C ++ P +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ 222
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
+ + +Q + + D F+ +T E C + E
Sbjct: 223 V-----HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 320 LFESIIPVCPPQTQPSE 336
+ P P ++
Sbjct: 278 VTIYSFP--APNVILTK 292
Score = 85.3 bits (210), Expect = 2e-18
Identities = 44/335 (13%), Positives = 93/335 (27%), Gaps = 58/335 (17%)
Query: 20 TAQRTPTISYIS-QEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPISTG 75
T TP ++ + +G + L+C V+ + V+ ++ ++ EP
Sbjct: 81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA 140
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEVD 128
T V ++ + C+ + + + SA
Sbjct: 141 EV-------------------TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAILPTG-GSIY 184
LQ P V+ + C G ++ + + PT
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKG---TRRNIAVEVEFAPVITVPKPRLGQALQY 241
S +T ED GT +G T + + + AP + + KP +
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV----SE 297
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
++ EA+P + Q + Q + + +
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-----------------LLLKATPEDNGR 340
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
S+ C A ++ + + P+ +
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 375
Score = 70.3 bits (171), Expect = 2e-13
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 24/219 (10%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDR 199
S +++ G V + C + LP + G+ K+ +++ ++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA- 256
C + G+ T + + V + P V P P + ++ L C VE P A
Sbjct: 61 SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGK-NLTLRCQVEGGAPRAN 118
Query: 257 --IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
+V ++ + + L + T V+ ++ CR L
Sbjct: 119 LTVVLLRGE--KELKREPAVGEP--------AEVTTTVLVRRDHHGANFSCRTELDLR-- 166
Query: 315 EKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP 353
+ +ELFE+ QT P + V+ V+ +
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ 205
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 97.7 bits (243), Expect = 2e-24
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
+ +L + + + D+G Y+CQ S V L+V ++ S + VV EGQP
Sbjct: 48 ETNSSLNIVNAKFEDSGEYKCQHQ---QVNESEPVYLEVFSDWLLLQAS--AEVVMEGQP 102
Query: 153 VQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211
+ L C ++ + ++ A+ Y + I T ED GTYYC +
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEAL----KYWYENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 212 KGTRRNIAVEVEFAP 226
+ + V AP
Sbjct: 159 DYESEPLNITVIKAP 173
Score = 79.2 bits (195), Expect = 1e-17
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 37/197 (18%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSIL 189
V + P +S N + + +G+ V L C W + T S L
Sbjct: 1 VPQKPKVSLNPPWN-RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------L 53
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL---GQALQYDMDLE 246
I ED G Y C + + +EV ++ + GQ L L
Sbjct: 54 NIVNAKFEDSGEYKCQHQQVNESEP---VYLEVFSDWLLLQASAEVVMEGQPL----FLR 106
Query: 247 CHVEA-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
CH + +++ K+ + N + SI++ D G+Y
Sbjct: 107 CHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDS----------------GTYY 150
Query: 305 CRAANKLGTSE-KTVEL 320
C E + + +
Sbjct: 151 CTGKVWQLDYESEPLNI 167
Score = 34.5 bits (79), Expect = 0.024
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 226 PVITVPKPRLGQALQYD-MDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATAD 283
P +++ P + + + + L C+ + + W + N +I + D
Sbjct: 5 PKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEETNSSLNIVNAKFED 62
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
G Y C+ + +E+F + + E
Sbjct: 63 S----------------GEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVME 99
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 98.3 bits (244), Expect = 4e-24
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 26/207 (12%)
Query: 38 IGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSS----LIIRDSRFAIRYDTA 92
G +V L C+ D Y + W DR+ L + + + D+R
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP---VISDNSTRSLVVSE 149
S L++ + Q D Y C V G A L V P +S N V+ +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 150 GQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG-----------------SILKI 191
C + G+P P+I+W R + G S L +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNI 218
+ +++C A + +G +
Sbjct: 194 RLRKDDRDASFHCAAHYSLPEGRHGRL 220
Score = 60.2 bits (145), Expect = 1e-10
Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 44/226 (19%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRREN------------- 173
++++ PP++ V G+ V L+C G H + W +
Sbjct: 1 EVRLSVPPLVE--------VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52
Query: 174 ------NAILPTGGSIYRGSI-----LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ T G + L + + D Y CV G + V
Sbjct: 53 QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Query: 223 EFAP---VITVPKPRLGQALQYDMD-LECHVE-AYPPPAIVWIKEDT-----QQVLTNNQ 272
P ++ K L + C+ P P I W + ++
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGS-YICRAANKLGTSEKT 317
S + + + T+ + + K + + C A L
Sbjct: 173 MTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHG 218
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 97.5 bits (242), Expect = 7e-24
Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 17/207 (8%)
Query: 38 IGGTVELKCSVQY-----AQDYPVIWMKVDRNKVTEPLPISTGSSLI--IRDSRFAIRYD 90
+G +V L C +Q + W + + + G S R A R
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
+L + ++ D G Y C + S ++ L+V P + + ++
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGE 131
Query: 151 QPVQLECFA-GGHPTPRISWRRENNAILPT-------GGSIYRGSILKIPQITKEDRGTY 202
C + GG P +I+W + + T G++ S+ + ++ D
Sbjct: 132 PVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQV 191
Query: 203 YCVAEN-GVGKGTRRNIAVEVEFAPVI 228
C E+ K +++ V +
Sbjct: 192 TCKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 57.4 bits (138), Expect = 9e-10
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 37/219 (16%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPR-----ISWRRENNAIL---------PTGGSIYRGSI- 188
+ G V L C+ ++W R + P+ R
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 189 ------------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG 236
L++ + ED G+Y C+ +I + V P T ++
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 237 QALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
+ C PP I W + T+ + T T++ ++
Sbjct: 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGF-----LSGTVTVTSLWILVP 182
Query: 296 EKRQYGS-YICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+ G C+ ++ + + + + V P
Sbjct: 183 SSQVDGKQVTCKVEHESFEKPQLLTV---SLTVYYPHHH 218
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 97.2 bits (242), Expect = 8e-24
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 40/211 (18%)
Query: 144 SLVVSEGQPVQLEC----------FAGGHPTPRISWRRENNAILPTG----GSIYRGSIL 189
S + ++++ +++W +AI + G L
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRR-NIAVEV-----------EFAPVITVPKPRLGQ 237
+I + T D+G Y +G + +++ + + A + + R+
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121
Query: 238 ALQYDMD--------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289
L + L C+V PPP + W+K + + L H ++ +
Sbjct: 122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE--KALAQTDHCNLKF----EAGRTAY 175
Query: 290 IRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + G Y NK G+ +
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 95.7 bits (238), Expect = 2e-23
Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 45/206 (21%)
Query: 34 QIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92
+I+ ++L V Y + V W I R
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS--------------AIRYSDRVKTGVT-- 55
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR-------------------- 132
L + + D G Y + VDL +
Sbjct: 56 GEQIWLQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 133 -RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----G 186
R V+ + + EG+ + L C G P P +SW + A+ T +
Sbjct: 115 NRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
+ I ++ D G Y V +N G
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGS 199
Score = 49.5 bits (118), Expect = 3e-07
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 8/112 (7%)
Query: 245 LECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
L V Y + W + + + +++ G Y
Sbjct: 22 LYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGV-----TGEQIWLQINEPTPNDKGKY 74
Query: 304 ICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
+ + +KTV+L + Q + + N A + P
Sbjct: 75 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126
Score = 40.6 bits (95), Expect = 3e-04
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 24/117 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLII 80
R + + G + L C+V P V W+K ++ +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEK--------------ALA 159
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRP 134
+ ++++ T + + D+G Y V NK +++ + V P
Sbjct: 160 QTDHCNLKFEA-GRTAYFTINGVSTADSGKYGLVVK----NKYGSETSDFTVSVFIP 211
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 95.3 bits (237), Expect = 3e-23
Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 37/218 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q +V LKC +D W IS+ +S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-------NESLISSQAS------ 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ + D+G YRCQ + +S V L+V ++
Sbjct: 55 -------------SYFIDAATVDDSGEYRCQTQ---LSTLSDPVQLEVHIGWLLL--QAP 96
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V E P+ L C + ++++ + + S IP+ T +D G+Y
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYIPKATLKDSGSY 152
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
+C G + + + + ++ Q
Sbjct: 153 FCRGLVGSKNVSSETVQITITQGLAVSTISSFFPPGYQ 190
Score = 69.9 bits (171), Expect = 3e-14
Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 40/212 (18%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
V+ V E V L+C P W + I S I
Sbjct: 8 AVVFLEPQWY-RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------YFIDA 60
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVE 250
T +D G Y C + + +EV ++ + + L CH
Sbjct: 61 ATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI----HLRCHSW 113
Query: 251 AYPPPA-IVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
+ +++ + +N + I D GSY CR
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDS----------------GSYFCRGL 157
Query: 309 NKLGT-SEKTVELFESIIPVCPPQTQPSELLP 339
S +TV++ I + S P
Sbjct: 158 VGSKNVSSETVQI---TITQGLAVSTISSFFP 186
Score = 42.6 bits (100), Expect = 7e-05
Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 26/137 (18%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLII 80
+ + K+ + L+C + V +++ G
Sbjct: 87 HIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQ-------------NGKGRKY 132
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ D+G Y C+ ++G N S V + + + +S
Sbjct: 133 F-----------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTI 181
Query: 141 STRSLVVSEGQPVQLEC 157
S+ +G+ + +
Sbjct: 182 SSFFPPGYQGKKKKKKG 198
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 93.8 bits (233), Expect = 6e-23
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 37/200 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q +V LKC +D W IS+ +S
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-------NESLISSQAS------ 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ + D+G YRCQ + +S V L+V ++
Sbjct: 55 -------------SYFIDAATVNDSGEYRCQTN---LSTLSDPVQLEVHIGWLLL--QAP 96
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V E P+ L C + ++++ + + S IP+ T +D G+Y
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR----KYFHHNSDFHIPKATLKDSGSY 152
Query: 203 YCVAENGVGKGTRRNIAVEV 222
+C G + + + +
Sbjct: 153 FCRGLVGSKNVSSETVNITI 172
Score = 75.3 bits (185), Expect = 2e-16
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 37/194 (19%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIP 192
V+ + V E V L+C P W + I S I
Sbjct: 7 KAVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------YFID 59
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL---GQALQYDMDLECHV 249
T D G Y C + +EV ++ + + L CH
Sbjct: 60 AATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI----HLRCHS 112
Query: 250 EA-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ +++ + +N + I D GSY CR
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDS----------------GSYFCRG 156
Query: 308 ANKLGT-SEKTVEL 320
S +TV +
Sbjct: 157 LVGSKNVSSETVNI 170
Score = 35.6 bits (82), Expect = 0.010
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 18/112 (16%)
Query: 226 PVITVPKPRLGQALQYD-MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
V+ + +P+ L+ D + L+C P + + + Y I
Sbjct: 8 AVVFL-EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFID------- 59
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
G Y C+ + +E+ + + P+ E
Sbjct: 60 ---------AATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 102
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 94.1 bits (233), Expect = 8e-23
Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 15/197 (7%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SILKIPQITKEDRG 200
+ G V L C G +P SWR + + P G + S L + ++ +
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQID--SPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA---I 257
+Y C A K + I VE+ P + ++C V P I
Sbjct: 68 SYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
+K D L +Q + + E + + + +CRA + +
Sbjct: 127 DLLKGDH---LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Query: 318 VELFESIIPV---CPPQ 331
+ +++ + P+
Sbjct: 184 PTVRQAVKELQVYISPK 200
Score = 73.3 bits (179), Expect = 2e-15
Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 38/209 (18%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
IG +V L CS + W + + + +S T
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS-------------------T 55
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + + + Y C + K+ + +++ P + S + G+P+ ++C
Sbjct: 56 LTMNPVSFGNEHSYLCTATCE-SRKLEKGIQVEIYSFPKDPE-IHLSGPLEAGKPITVKC 113
Query: 158 FA-GGHPTPR--ISWRRENNAI-------LPTGGSIYRGSILKIPQITKEDRG-TYYCVA 206
+P R I + ++ + S+ S+ ED G C A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173
Query: 207 ENGVG------KGTRRNIAVEVEFAPVIT 229
+ + + ++V +P T
Sbjct: 174 KLHIDEMDSVPTVRQAVKELQVYISPKNT 202
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 93.8 bits (233), Expect = 1e-22
Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V + V ++ ++ I ++ + D +
Sbjct: 17 KGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIE 62
Query: 98 LLVKDIQETDAGYYRCQV-------------IIGINNKISAEVDLQ-----VRRPPVISD 139
+ ++ +Q+ D G Y Q+ + + K+ E + Q ++ P +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 140 NSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRG--SILKIPQITK 196
S V+ V L+C A I W ++ I ++ L I + +K
Sbjct: 123 --YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180
Query: 197 EDRGTYYCVAENGVGK 212
+D G Y + ++ GK
Sbjct: 181 KDAGIYEVILKDDRGK 196
Score = 86.5 bits (214), Expect = 4e-20
Identities = 30/205 (14%), Positives = 66/205 (32%), Gaps = 38/205 (18%)
Query: 143 RSLVVSEGQPVQLE-CFAGGHPTPRISWRRENNAILPTGGSIYRGSI--------LKIPQ 193
++ + E V+ ++++ I G Y+ I + + +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE--GPKYKMHIDRNTGIIEMFMEK 67
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAV-----------EVEFAPVITVPKPRLGQALQ-- 240
+ ED GTY ++G + V E + I P + L
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127
Query: 241 ----YDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
++ L+C V IVW K++ + ++ ++ + T+ +
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKD-------GICTLLITEF 178
Query: 296 EKRQYGSYICRAANKLGTSEKTVEL 320
K+ G Y + G + ++L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 43.4 bits (102), Expect = 4e-05
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+ + +I + + + Y + +T I + +EK Q G
Sbjct: 23 WMQAEKLSGNAKVNYIFNE--KEIFEGPKYKMHIDR------NTGIIEMFMEKLQDEDEG 74
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
+Y + + T+ TV L + + + +R
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 91.1 bits (226), Expect = 1e-22
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG 180
+ L V PP+IS ST++ G+ Q++CF P P RI+W + N +
Sbjct: 2 SSGSSGTLTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 181 GSIYRG----------SILKIPQITKEDRGTYY-CVAENGVGKGTRRNIAVEVEFAPVIT 229
Y S L I I + D T Y C A N G I ++ + +
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSE--- 115
Query: 230 VPKPRLG 236
+ P G
Sbjct: 116 MSGPSSG 122
Score = 68.0 bits (166), Expect = 3e-14
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 214 TRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLT 269
+ + + V P+I+ + G+ Q ++C + + PPP I W ++
Sbjct: 3 SGSSGTLTVNGPPIISSTQTQHALHGEKGQ----IKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 270 NNQHYSISHFATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328
+ Y++ +T + T TI I Q Y C A N G+ + + L E +
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQ-TIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Query: 329 PPQT 332
P +
Sbjct: 118 GPSS 121
Score = 38.3 bits (89), Expect = 7e-04
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 26/125 (20%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIRD 82
P IS +Q Q G ++KC ++ + P + W + + +G+
Sbjct: 15 PIISS-TQTQHALHGEKGQIKCFIR-STPPPDRIAWSWKEN-------VLESGT-----S 60
Query: 83 SRFAIRYDTASSTY--TLLVKDIQETD-AGYYRCQVIIGINNKI---SAEVDLQVRRPPV 136
R+ + + TL + +I D Y C N + + L+ + +
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW----NSFGSDTEIIRLKEQGSEM 116
Query: 137 ISDNS 141
+S
Sbjct: 117 SGPSS 121
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 93.1 bits (231), Expect = 2e-22
Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 9/179 (5%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +V L + + W+ + + + + + + + R + +Y+
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL-NFTQSYS 71
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + +++ D G YR Q+ + K+S+ +R+ I + L + + L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 158 FA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
W N + ++ Y C+AEN V +
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQP----NLTV--SWDPRISSEQDYTCIAENAVSNLSF 184
Score = 59.2 bits (143), Expect = 1e-10
Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 39/202 (19%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAIL-------------------PTG 180
+ + G+ V L F G I+W ++
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQAL 239
+ + L++ + ED G+Y + I V +L Q +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 240 QYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
++ L C VE A + W L++ + ++S
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALG--NTLSSQPNLTVSW---------------DPRIS 166
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
Y C A N + +V
Sbjct: 167 SEQDYTCIAENAVSNLSFSVSA 188
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 86.6 bits (215), Expect = 3e-21
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR 185
++ + R P I+ N + S G+ +++ C A G+P P+I W ++N ++ G + +
Sbjct: 2 QLTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 186 --GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
L I ++ KED G Y C A + +G + +E A T
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105
Score = 58.1 bits (141), Expect = 6e-11
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS 275
R + V AP IT ++ +++ C PPP I+W K++ + L +
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN--ETLVEDSGIV 58
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + + K G Y C+A + LG ++
Sbjct: 59 LKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
Score = 39.2 bits (92), Expect = 2e-04
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
+ PTI+ + Q IG ++E+ C+ P ++W K +
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTAS---GNPPPQIMWFKDNE------------- 49
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP 134
++ DS ++ L ++ +++ D G Y CQ ++G E +
Sbjct: 50 -TLVEDSGIVLKDGNR----NLTIRRVRKEDEGLYTCQACSVLG---CAKVEAFFIIEGA 101
Query: 135 PVISD 139
++
Sbjct: 102 QEKTN 106
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 88.8 bits (220), Expect = 4e-21
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 23/181 (12%)
Query: 38 IGGTVELKCS-VQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
+G + L Q + D I W K K + +
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRK--EKETFKEKDTYKL-----FKN 65
Query: 96 YTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQ 154
TL +K ++ D Y+ + N + DL+++ ++ +
Sbjct: 66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV------SKPKISWTCINTT 119
Query: 155 LECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
L C P ++ + + L + + T + C A N V K +
Sbjct: 120 LTCEVMNGTDPELNLYQ-DGKHLKLSQRVI------THKWTTSLSAKFKCTAGNKVSKES 172
Query: 215 R 215
Sbjct: 173 S 173
Score = 80.7 bits (199), Expect = 3e-18
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 39/199 (19%)
Query: 138 SDNSTRSLVVSEGQPVQLEC--FAGGHPTPRISWRRENN----AILPTGGSIYRGS---- 187
+ + GQ + L+ F I W + ++ A ++
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 188 -----ILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQALQY 241
LKI + +D+ Y + GK + +++ V KP++
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI-QER---VSKPKISWTCI- 116
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ L C V P + ++ + L +Q + T+
Sbjct: 117 NTTLTCEVMNGTDPELNLYQDG--KHLKLSQRVITHKWTTSLS----------------A 158
Query: 302 SYICRAANKLGTSEKTVEL 320
+ C A NK+ +
Sbjct: 159 KFKCTAGNKVSKESSVEPV 177
Score = 27.2 bits (60), Expect = 8.5
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 31/97 (31%)
Query: 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY 89
+S+ +I L C V D + + + + +I
Sbjct: 106 VSKPKISWTCINTTLTCEVMNGTDPELNLYQDGK-------HLKLSQRVIT--------- 149
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAE 126
+ + ++C NK+S E
Sbjct: 150 -----------HKWTTSLSAKFKCTA----GNKVSKE 171
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 84.0 bits (208), Expect = 4e-20
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ +R P+ +S V EG V+LEC P P++ W+R N +
Sbjct: 3 HHHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61
Query: 182 SIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
I L I + K+D G Y A N G T N ++V P T+P
Sbjct: 62 RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQTLP 116
Score = 60.9 bits (148), Expect = 7e-12
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 210 VGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVL 268
+G + + E + AP+ P+ + L+ + LEC + A PPP + W + + + V
Sbjct: 1 MGH-HHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQ 57
Query: 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328
N S+ D T+ + + K+ G Y A N+ G + L +
Sbjct: 58 FNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL---DVTAR 110
Query: 329 PPQTQP 334
P QT P
Sbjct: 111 PNQTLP 116
Score = 41.2 bits (97), Expect = 6e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 21/103 (20%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +V+L+C + A P + W + + R ++ D + T
Sbjct: 30 GDSVKLECQIS-AIPPPKLFWKR-------------NNEMVQFNTDRISLYQDN-TGRVT 74
Query: 98 LLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVIS 138
LL+KD+ + DAG+Y + G + L V P +
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAG---VTTCNTRLDVTARPNQT 114
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 83.7 bits (207), Expect = 6e-20
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKI 191
PPVI + V+ L C A G P P I WR++ + +L+I
Sbjct: 8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
D G Y C+A G+ + +EV+ V P
Sbjct: 67 RYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVPVQP 105
Score = 59.4 bits (144), Expect = 3e-11
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
PVI A+ L C P P I+W K D V T +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQ-------- 58
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF--ESIIPVCPPQTQPSELLP 339
+ +++ + G Y C A+ G + + + E +PV PP+ L+P
Sbjct: 59 LENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIP 115
Score = 47.8 bits (114), Expect = 3e-07
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q + GT L C A P ++W K G + +
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCV---ATGSPVPTILWRK-------------DGVLVSTQ 52
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
DSR + L ++ + D G Y C G + + ++V+ V
Sbjct: 53 DSRIKQLENG-----VLQIRYAKLGDTGRYTCIASTPSG---EATWSAYIEVQEFGVPVQ 104
Query: 140 -NSTRSLVVSEGQP 152
+ P
Sbjct: 105 PPRPTDPNLIPSAP 118
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 82.4 bits (204), Expect = 8e-20
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
I S + G + L+C A G P P W + N L + +P
Sbjct: 3 KLQIC-VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETK----KLYMVPY 56
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ E +GTY+C N + + + ++
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 24/94 (25%)
Query: 226 PVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
I V P G L L+C P P W K + + Y + +
Sbjct: 4 LQICVEPTSQKLMPGSTLV----LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDL 59
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ G+Y C N + +
Sbjct: 60 EHQ----------------GTYWCHVYNDRDSQD 77
Score = 39.6 bits (93), Expect = 1e-04
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 31/114 (27%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
I Q G T+ L+C A P W K + PL T ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNE-----LPLTHETKKLYMVP 55
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ G Y C V +++ S +V++ +
Sbjct: 56 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 85.3 bits (211), Expect = 8e-20
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 28/194 (14%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V L Y + W+ K+ E + +S F R D +
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILE---YFPNGKKTVFESVFKDRVDLDKTNGA 70
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + ++ + D G Y +++ + ++ ++V ++ ++ E L C
Sbjct: 71 LRIYNVSKEDRGDYYMRML--HETEDQWKITMEVYEMV------SKPMIYWECSNATLTC 122
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
+ + + + R + C A N V + +
Sbjct: 123 EVLEGTDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQESEM- 174
Query: 218 IAVEVEFAPVITVP 231
V+ P
Sbjct: 175 --------EVVNCP 180
Score = 59.9 bits (145), Expect = 6e-11
Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 43/200 (21%)
Query: 139 DNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRR---------ENNAILPTGGSIYRGSI 188
D S ++ G V L R++W N S+++ +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 189 --------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
L+I ++KEDRG YY + + I +EV + V KP +
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHE--TEDQWKITMEV-YEMV---SKPMIYWECS 116
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L C V + + + L + + ++S+ T
Sbjct: 117 N-ATLTCEVLEGTDVELKLYQGK--EHLRSLRQKTMSYQWTNLR---------------- 157
Query: 301 GSYICRAANKLGTSEKTVEL 320
+ C+A N++ + +
Sbjct: 158 APFKCKAVNRVSQESEMEVV 177
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 86.8 bits (214), Expect = 2e-19
Identities = 51/332 (15%), Positives = 89/332 (26%), Gaps = 58/332 (17%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
T+S S ++ G L +V + P W K D
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHE------------- 48
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
++T TL V D +AG Y+ V + +I +
Sbjct: 49 ------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI 96
Query: 141 S-TRSLVVSEGQPVQLEC---FAGGHPTP-----RISWRRENNAILPTGGSIYRGSILKI 191
+ + VS V+L F+GG SW + + I T + I
Sbjct: 97 TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-------QDITI 149
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-----LGQALQYD---- 242
+ T + G Y + + LG + +
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY-- 300
D+ P I + ++ + + F+ T + E Y
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Query: 301 -GSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
+ C A ++TVE+ S C +
Sbjct: 270 TAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
Score = 71.4 bits (174), Expect = 4e-14
Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 39/218 (17%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPR---ISWRRENNAILPTGGSIYRGSIL 189
+S S G L G P P +W +++ ++
Sbjct: 2 AFTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT----- 55
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLEC 247
+ T E+ G+Y ++ + + +E A +I + D++L
Sbjct: 56 -VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 248 HVEAY---PPPAIV-----WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
V+ P W K + V+ Q +I F
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGED--VIDTTQDITIQEFTADKN--------------- 157
Query: 300 YGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
G Y + + S + + + Q
Sbjct: 158 -GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESK 194
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 81.8 bits (202), Expect = 3e-19
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS------ 182
Q PP I + L+VS+G+P L C A G PTP I W + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 183 IYRGSILKIPQI-----TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
+ L +I ++ D G Y CVA N +G+ + ++EV A
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 50.6 bits (121), Expect = 3e-08
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 221 EVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
+ +F P I P G+ L C E P P I W K + + ++
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPAT----LNCKAEGRPTPTIEWYKGGER--VETDKDDPR 58
Query: 277 SHFATADEFTDTTIRVITIEKRQY--GSYICRAANKLGTS 314
SH + +R++ K + G Y+C A N LG +
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 36.3 bits (84), Expect = 0.003
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 15/114 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I + I G L C A+ P + W K +V +++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLP 65
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
++ D G Y C + +S + L+V
Sbjct: 66 SGSLFFL--------RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 84.1 bits (207), Expect = 4e-19
Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 21/202 (10%)
Query: 39 GGTVELKCSVQY-------AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIR 88
G V + CS Y + V W + + + ++ RF +
Sbjct: 15 GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL 74
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTRSL 145
D +L + D + D G Y +V G + K +++L+V D
Sbjct: 75 GDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE- 133
Query: 146 VVSEGQPVQLEC----FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
+ G+P +L C P SW NA+ P R S L + ++
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTG--NALSPLDPETTRSSELTLTPRPEDHGTN 191
Query: 202 YYCVAEN-GVGKGTRRNIAVEV 222
C + G T R + + V
Sbjct: 192 LTCQMKRQGAQVTTERTVQLNV 213
Score = 47.9 bits (113), Expect = 1e-06
Identities = 38/217 (17%), Positives = 63/217 (29%), Gaps = 52/217 (23%)
Query: 143 RSLVVSEGQPVQLEC-------FAGGHPTPRISWRRENNAILPTG--------------- 180
+S+ V EG V + C P + W R+
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 181 -------GSIYRGSI-LKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVEVEFAPVITVP 231
G + + + L I ED G+Y+ E G K + + + +E +I P
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 232 KPRLGQALQ--YDMDLECHV----EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285
+ L+ L C + EA PP W + S E
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPED 187
Query: 286 TDTTIRVITIEKRQYGSYICRAANKLG--TSEKTVEL 320
+ C+ + T+E+TV+L
Sbjct: 188 HG-------------TNLTCQMKRQGAQVTTERTVQL 211
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 80.2 bits (198), Expect = 5e-19
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P SL+V G +QL C I+W R+ ++ + + G +++
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRD 66
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
D G Y CV + G T +V V
Sbjct: 67 SIPADSGLYACVTSSPSGSDT-TYFSVNV 94
Score = 42.9 bits (101), Expect = 9e-06
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 220 VEVEFAPVITVPKPR-----LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ + P + G LQ L C + +I W+++ Q L +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQ----LRCRLRD-DVQSINWLRDGVQ--LVESNRT 55
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
I+ + V G Y C ++ G+ +
Sbjct: 56 RIT---------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 34.0 bits (78), Expect = 0.013
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 23/92 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ + + G ++L+C ++ D I W++ + + I
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGV-------QLVESNRTRITGE 60
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+ V+D D+G Y C
Sbjct: 61 -------------EVEVRDSIPADSGLYACVT 79
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 80.5 bits (199), Expect = 5e-19
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKI 191
PP+I + ++ L+C A G P P ISW +E +I L+I
Sbjct: 8 PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 192 PQITKEDRGTYYCVAENGVGK 212
+ D GTY CVA + G+
Sbjct: 67 KNLRISDTGTYTCVATSSSGE 87
Score = 52.0 bits (125), Expect = 6e-09
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L+C P P I W+KE + +I T+++ + G+Y
Sbjct: 28 LKCKATGDPLPVISWLKEG-FTFPGRDPRATI--------QEQGTLQIKNLRISDTGTYT 78
Query: 305 CRAANKLGTSEKTVEL 320
C A + G + + L
Sbjct: 79 CVATSSSGETSWSAVL 94
Score = 43.9 bits (104), Expect = 5e-06
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 29/112 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q + GT LKC A P + W+K G + R
Sbjct: 9 PIILQGPANQTLAVDGTALLKCK---ATGDPLPVISWLK-------------EGFTFPGR 52
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQV 131
D R I+ TL +K+++ +D G Y C G + S L V
Sbjct: 53 DPRATIQEQG-----TLQIKNLRISDTGTYTCVATSSSG---ETSWSAVLDV 96
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 82.9 bits (204), Expect = 1e-18
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 11/197 (5%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--ILPTGGSI--YRGSIL 189
V + + ++ + V + C +S +P G I
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV---PKPRLGQALQYDMDLE 246
IP G +C A+ V V + V P + ++ + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK---RQYGSY 303
C I + E + + + + + +TI+ G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 304 ICRAANKLGTSEKTVEL 320
C A++ L T + + +
Sbjct: 187 TCAASSGLMTKKNSTFV 203
Score = 81.8 bits (201), Expect = 3e-18
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 34/206 (16%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
TV + C + + V K P I +D S
Sbjct: 24 NKTVVIPCLGSIS-NLNVSLCARYPEKRFVP-------------DGNRISWD---SKKGF 66
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV--ISDNSTRSLVVSEGQPVQLE 156
+ + AG C+ I + S + V + + + + + +S G+ + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 157 CFAGGHPTPRISWR-RENNAILPTGGSIYR-------------GSILKIPQITKEDRGTY 202
C A I + ++ + R S L I +T+ D+G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVI 228
C A +G+ + + V V P+
Sbjct: 187 TCAASSGLMT-KKNSTFVRVHEDPIE 211
Score = 27.4 bits (60), Expect = 6.1
Identities = 5/89 (5%), Positives = 20/89 (22%), Gaps = 8/89 (8%)
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ + C + + ++ + + S + + G
Sbjct: 26 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS--------KKGFTIPSYMISYAG 77
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPP 330
C A + + + + +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYD 106
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 79.7 bits (197), Expect = 1e-18
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----G 181
+ I RS+ V EG+ + C G P P ++W R+ + +
Sbjct: 6 HHSSKTTLAARIL-TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ S +I + D G Y V EN GK
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGK 95
Score = 57.4 bits (139), Expect = 9e-11
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 219 AVEVEFAPVITVPKPR-----LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH 273
+ + A I PR G++ + C + P P + W+++ QVL+ +
Sbjct: 8 SSKTTLAARILTK-PRSMTVYEGESAR----FSCDTDGEPVPTVTWLRKG--QVLSTSAR 60
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ ++ +T + +++ G+Y N G E L
Sbjct: 61 HQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 27/120 (22%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTG 75
+ I + G + C P V W++
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTD---GEPVPTVTWLR--------------K 51
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR 133
++ +R + T + +Q +D G Y V G K AE L +++
Sbjct: 52 GQVLSTSARHQVTTT--KYKSTFEISSVQASDEGNYSVVVENSEG---KQEAEFTLTIQK 106
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 77.8 bits (192), Expect = 4e-18
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
S +V G +QL C I+W R+ + + + G +++ D G Y
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69
Query: 203 YCVAENGVGKGTRRNIAVEVEFAP 226
CV + G +V V A
Sbjct: 70 ACVTSSPSGS-DTTYFSVNVSDAL 92
Score = 45.1 bits (107), Expect = 2e-06
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C + +I W+++ Q L + I+ + V G Y
Sbjct: 23 LRCRLRD-DVQSINWLRDGVQ--LAESNRTRIT---------GEEVEVQDSVPADSGLYA 70
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
C ++ G+ + ++ + PS
Sbjct: 71 CVTSSPSGSDTTYFSV--NVSD--ALPSGPS 97
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 30/116 (25%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIR 81
+ + + + G ++L+C ++ D + W++ L S
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLR---DDVQSINWLRDGV-----QLAES-------- 46
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPP 135
+R I + + V+D D+G Y C G + + V
Sbjct: 47 -NRTRITGEE------VEVQDSVPADSGLYACVTSSPSG---SDTTYFSVNVSDAL 92
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 77.7 bits (192), Expect = 5e-18
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY 184
+ + P S + V EGQ L+C G P PRI+W N + S
Sbjct: 2 SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQYARSTC 59
Query: 185 RGSI--LKIPQITKEDRGTYYCVAENGVGK 212
+ L I ED GTY C+AEN +G+
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQ 89
Score = 48.9 bits (117), Expect = 8e-08
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 219 AVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+ +E AP + + ++ D L+C V P P I W+ Q + + +
Sbjct: 5 SSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNG--QPIQYARSTCEA 61
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
A I+ E G+Y C A N LG + +
Sbjct: 62 GVAE------LHIQDALPEDH--GTYTCLAENALGQVSCSAWV 96
Score = 31.1 bits (71), Expect = 0.13
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSS 77
+ + P+ S + ++ G L+CSV+ P + W+ + P+ +
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQ-----PIQYA---- 55
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113
R + L ++D D G Y C
Sbjct: 56 ----------RSTCEAGVAELHIQDALPEDHGTYTC 81
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 78.8 bits (194), Expect = 1e-17
Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 32/197 (16%)
Query: 38 IGGTVELKC-SVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
+G + L + Q D V W + V E ++ F I +
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWER-GSTLVAE---FKRKMKPFLKSGAFEI-----LAN 60
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
L +K++ D+G Y + N L +R ++S + ++ E L
Sbjct: 61 GDLKIKNLTRDDSGTYNVT-VYSTNGTRILNKALDLRILEMVS----KPMIYWECSNATL 115
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C + + + + R + C A N V + +
Sbjct: 116 TCEVLEGTDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQESE 168
Query: 216 RNIAVEVEFAPVITVPK 232
V+ P+
Sbjct: 169 ---------MEVVNCPE 176
Score = 73.1 bits (179), Expect = 2e-15
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 37/189 (19%)
Query: 146 VVSEGQPVQLEC--FAGGHPTPRISWRRENNAILPTGGSIYR------------GSILKI 191
+ G + L F + W R + + + G LKI
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD-LKI 65
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA 251
+T++D GTY + G ++ + V KP + + L C V
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILN---KALDLRILEMVSKPMI-YWECSNATLTCEVLE 121
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
+ + + L + + ++S+ T + C+A N++
Sbjct: 122 GTDVELKLYQGK--EHLRSLRQKTMSYQWTNLR----------------APFKCKAVNRV 163
Query: 312 GTSEKTVEL 320
+ +
Sbjct: 164 SQESEMEVV 172
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 76.3 bits (188), Expect = 2e-17
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY 184
+ V+ G V L C P+P+I W ++ + +
Sbjct: 1 GSSGSSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL-----PLP 54
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEV 222
+L +P+I +D+GTY CVA + R +++ +
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 51.6 bits (124), Expect = 8e-09
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C V A P P I W+K+ L + + D+ G+Y
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ----------------GTYS 73
Query: 305 CRAANKLGTSEKTVEL 320
C A + +++ +
Sbjct: 74 CVATHSSHGPQESRAV 89
Score = 48.6 bits (116), Expect = 9e-08
Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 28/118 (23%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSS 77
++ + + GGTV L C V AQ P I WMK PLP+
Sbjct: 5 SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGV-----PLPLPPSPV 58
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI-IGINNKISAEVDLQVRRP 134
LI+ + I D G Y C + S V + + P
Sbjct: 59 LILPE--------------------IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 75.8 bits (186), Expect = 7e-17
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI 183
S+ + + + S G V+L C A G P P I W E +
Sbjct: 11 SSGLVPRGSHMAGFV-QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 184 YRG-----------------SILKIPQITKEDRGTYYCVAENGVGKG 213
+ G S + I + +ED GTY C A N +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN 116
Score = 52.3 bits (125), Expect = 1e-08
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 14/128 (10%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIV 258
G+ + + G + P Q ++L C P P I
Sbjct: 2 GSSHHHHHHSSG------LVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIR---VITIEKRQY---GSYICRAANKLG 312
W E +Q + + I+I+ G+Y CRA+N
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 313 TSEKTVEL 320
+ T
Sbjct: 115 RNHLTRAP 122
Score = 45.8 bits (108), Expect = 2e-06
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
Q + +GG+VEL C P + W + + G+
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAV---GSPVPEIQWWFEGQGPNDICSQLWDGA 73
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113
+ Y + T+ + + E D G Y C
Sbjct: 74 R--LDRVHIHATYHQ-HAASTISIDTLVEEDTGTYEC 107
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 74.7 bits (184), Expect = 9e-17
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 131 VRRPPVI--SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---R 185
+ PP I + ++ + G+ + L G P P++ W + + + +
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
++ + Q + D G Y + K T I + V
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDT-ATIRIRV 113
Score = 53.2 bits (128), Expect = 3e-09
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 206 AENGVGKGTRRNIAVEVEFAPVITVPKP-------RLGQALQYDMDLECHVEAYPPPAIV 258
+ G + E+ P I +P+ ++G+ L L + P P +V
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLN----LVVPFQGKPRPQVV 57
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
W K + T+ H S DT V + G Y + T+
Sbjct: 58 WTK-GGAPLDTSRVHVRTSD-------FDTVFFVRQAARSDSGEYELSVQIENMKDTATI 109
Query: 319 EL 320
+
Sbjct: 110 RI 111
Score = 40.8 bits (96), Expect = 7e-05
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 24/107 (22%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
Q I+ +G + L Q P V+W K + SR +R
Sbjct: 32 QTYIRKVGEQLNLVVPFQ---GKPRPQVVWTKGGA---------------PLDTSRVHVR 73
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ V+ +D+G Y V I N K +A + ++V
Sbjct: 74 TSDFDTV--FFVRQAARSDSGEYELSVQI-ENMKDTATIRIRVVEKA 117
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 77.0 bits (189), Expect = 1e-16
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 30/193 (15%)
Query: 36 KDIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD- 90
K++ L C + W K + ++ S + + R
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEK------KMVLTMMSGDMNIWPEYKNRTIF 59
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVII----GINNKISAEVDLQVRRPPVISDNSTRSLV 146
++ ++++ ++ +D G Y C V+ + AEV L V+ S
Sbjct: 60 DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF--PTPSISDFE 117
Query: 147 VSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG---------SILKIPQITK 196
+ ++ C GG P P +SW + ++ + S L
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---M 174
Query: 197 EDRGTYYCVAENG 209
++ C+ + G
Sbjct: 175 TTNHSFMCLIKYG 187
Score = 68.9 bits (168), Expect = 7e-14
Identities = 27/196 (13%), Positives = 51/196 (26%), Gaps = 28/196 (14%)
Query: 146 VVSEGQPVQLECF----AGGHPTPRISWRRENNAIL------PTGGSIYRGSI------- 188
+ L C RI W++E +L Y+
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD-- 244
+ I + D GTY CV +R EV + P P + +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124
Query: 245 -LECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ C +P P + W++ + + + + + S
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEE-----LNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179
Query: 303 YICRAANKLGTSEKTV 318
++C +T
Sbjct: 180 FMCLIKYGHLRVNQTF 195
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 74.0 bits (182), Expect = 1e-16
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 132 RRPPVISDNST---RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--- 185
+R P ++ R V V+ C AGG+P P + W + N I
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 60
Query: 186 ---GSILKIPQITKEDRGTYYCVAENGVGK 212
L + + D+G Y CV EN G
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90
Score = 50.9 bits (122), Expect = 2e-08
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C P P + W+K + ++ + ++ G+Y
Sbjct: 28 FRCPAGGNPMPTMRWLKNG--KEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYT 81
Query: 305 CRAANKLGTSEKTVEL 320
C N+ G+ T L
Sbjct: 82 CVVENEYGSINHTYHL 97
Score = 35.1 bits (81), Expect = 0.006
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 32/120 (26%)
Query: 22 QRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPIST 74
+R P + + + + TV+ +C A P + W+K +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCP---AGGNPMPTMRWLKNGKE---------- 48
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
++ R + ++L+++ + +D G Y C V N+ I+ L V
Sbjct: 49 ----FKQEHRIGGYKVR-NQHWSLIMESVVPSDKGNYTCVVE----NEYGSINHTYHLDV 99
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 73.5 bits (181), Expect = 1e-16
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS 187
PP I + + EG+ + + C G PTP ++W I + +
Sbjct: 5 PPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L I + K+D G Y N G + + +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98
Score = 51.2 bits (123), Expect = 1e-08
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 225 APVITVP----KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
P I G+ L + C P P + W + + I +
Sbjct: 5 PPKIEALPSDISIDEGKVLT----VACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN-- 58
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
TT+ ++ ++K+ G Y N+ G+ TV +
Sbjct: 59 ---TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 38.8 bits (91), Expect = 2e-04
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 25/113 (22%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I + + D G + + C+ P V W R I
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFT---GEPTPEVTWSCGGR--------------KIHS 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR 132
+ + TL++ D+Q+ D G Y + G SA V++ +R
Sbjct: 49 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG---SDSATVNIHIR 98
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 2e-16
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSI 188
+ PP S V EGQ V + G P P +SW R + P G +
Sbjct: 3 KAPPTFK-VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 189 --LKIPQITKEDRGTYYCVAENGVGK 212
L+I + D G Y C A N G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGA 87
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
P V + D+ + V+ P P + W++ Q V + + ++
Sbjct: 5 PPTFKVS-LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNR-QPVRPDQRRFAEE-----A 57
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
E +R++ E+ G Y C+A N+ G + L
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 35.7 bits (83), Expect = 0.003
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 26/99 (26%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G V + VQ P V W++ + P+ RFA +
Sbjct: 20 GQDVIMSIRVQ---GEPKPVVSWLRNRQ-------PVRPD------QRRFAEEAE--GGL 61
Query: 96 YTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVR 132
L + + DAG+Y C+ + G E L+VR
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYG---ARQCEARLEVR 97
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 76.3 bits (187), Expect = 3e-16
Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 21/205 (10%)
Query: 38 IGGTVELKCSV---QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS 94
+G +L C + A+ + W+ +V + + + + R
Sbjct: 18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN-VYADGKEVEDRQSAPYRGRTSILRD 76
Query: 95 -----TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
L + ++ +D+G Y C + + ++++ + SD + +
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCYF---QDGDFYEKALVELKVAALGSDLHV-DVKGYK 132
Query: 150 GQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG------SILKIPQITKEDRGTY 202
+ LEC + G +P P+I W +PT + ++ +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 203 YCVAENGVGKGTRR-NIAVEVEFAP 226
C + + + +I++ F
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFR 217
Score = 65.5 bits (159), Expect = 2e-12
Identities = 38/237 (16%), Positives = 64/237 (27%), Gaps = 45/237 (18%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF---AGGHPTPRISWRRENN------- 174
A++ V P + ++ G+ L C T + W +
Sbjct: 1 ADLQFSVLGP-------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVY 53
Query: 175 -----------------AILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
+ G + L+I +T D G Y C ++G
Sbjct: 54 ADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---K 110
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI 276
VE++ A + + + + LEC YP P I W + + T
Sbjct: 111 ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA---- 166
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
A + + C + L EKT + SI Q
Sbjct: 167 PVVADGVGLYAVAA-SVIMRGSSGEGVSCTIRSSLLGLEKTASI--SIADPFFRSAQ 220
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 73.0 bits (179), Expect = 3e-16
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
GGT L C V + + W + + +RD+R + + +
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRAS-WHELS 72
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ V D+ +D G Y C + +++ L V P
Sbjct: 73 ISVSDVSLSDEGQYTCSL--FTMPVKTSKAYLTVLGVP 108
Score = 49.1 bits (117), Expect = 1e-07
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 13/85 (15%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI 188
+ T+++ V EG L C + + W L R +
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 189 ---------LKIPQITKEDRGTYYC 204
+ + ++ D G Y C
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTC 88
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 18/99 (18%)
Query: 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ------QVLTNNQHYSISHFAT 281
+TV G L C V+ ++ W Q + + +
Sbjct: 16 VTV---VEGG----TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR--- 65
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + +I V + G Y C + L
Sbjct: 66 -ASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYL 102
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 74.1 bits (182), Expect = 4e-16
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 100 VKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
+ + + + + N+ + + + P + + + V EG + +
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT-KTILDMEVVEGSAARFD 62
Query: 157 CFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYYCVAENGVG 211
C G+P P + W +++N + + L I ++ +D Y C A N +G
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 212 K 212
+
Sbjct: 123 E 123
Score = 60.3 bits (146), Expect = 3e-11
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 191 IPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLE 246
+ + N V + P T + ++ +
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKT-ILDMEVVEGSAARFD 62
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C VE YP P ++W K+D + ++H+ I + DE + ++ + + Y C+
Sbjct: 63 CKVEGYPDPEVMWFKDD--NPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCK 116
Query: 307 AANKLGTSEKTVEL 320
A N LG + T EL
Sbjct: 117 AVNSLGEATCTAEL 130
Score = 39.1 bits (91), Expect = 7e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 20/116 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G C V+ D V+W K D + F I YD +L
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNP--------------VKESRHFQIDYD-EEGNCSL 100
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
+ ++ D Y C+ +N+ + + +L V + E +
Sbjct: 101 TISEVCGDDDAKYTCKA---VNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 72.8 bits (179), Expect = 4e-16
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSI----LKIPQITK 196
+ + EG PV C G+P P+I W ++ I P +I R L T
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 197 EDRGTYYCVAENGVGK 212
+D G Y +A N G+
Sbjct: 76 DDDGNYTIMAANPQGR 91
Score = 51.2 bits (123), Expect = 1e-08
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
AP + + + + + C V P P I W K D +Q+ + HY+I D
Sbjct: 8 APFFEMK-LKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQR----D 61
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
++ G+Y AAN G T L V + PS
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM-----VQAVNSGPS 108
Score = 35.8 bits (83), Expect = 0.004
Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 25/102 (24%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G V C V P + W K + G + + + I+ D T
Sbjct: 23 GMPVTFTCRVA---GNPKPKIYWFK---D----------GKQISPKSDHYTIQRDL-DGT 65
Query: 96 YTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPP 135
+L D G Y G +IS L V+
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQG---RISCTGRLMVQAVN 104
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 71.9 bits (177), Expect = 5e-16
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYR---G 186
+ PVI + VS + A G P P W ++ AI G + G
Sbjct: 3 ISSKPVIV-TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
L+I + D G Y C +N G
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGS 87
Score = 50.7 bits (122), Expect = 2e-08
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 225 APVITVPKPRLGQALQ-------YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
P+ + KP + LQ P P +W K+ + +T Y +S
Sbjct: 1 GPISS--KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDG--KAITQGGKYKLS 56
Query: 278 HFATADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
D + I K G Y C N G+ + +L
Sbjct: 57 E--------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 29/114 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q+ + P IW K D +T+
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKAT---GEPRPTAIWTK-DGKAITQ------------- 49
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVR 132
++ + D + L + +D+G Y C V N +S+ L ++
Sbjct: 50 GGKYKLSED--KGGFFLEIHKTDTSDSGLYTCTVK----NSAGSVSSSCKLTIK 97
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 71.6 bits (176), Expect = 6e-16
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSIL 189
P I S R + + G LE G P P +W ++ + + +
Sbjct: 2 KPKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
P + D G Y +N +G+ V V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
Score = 52.7 bits (127), Expect = 3e-09
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 225 APVITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
P I + G LE P P W D +
Sbjct: 2 KPKILTASRKIKIKAGFTHN----LEVDFIGAPDPTATWTVGD--SGAALAPELLVDA-- 53
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + T+I + ++ G+Y + N+LG E E+
Sbjct: 54 ---KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 38.5 bits (90), Expect = 3e-04
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 29/114 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I S++ G T L+ P W G S
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFI---GAPDPTATWTV--------------GDSGAAL 45
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVR 132
+ SST ++ + D+G Y+ +V N+ A ++ V+
Sbjct: 46 APELLVDAK--SSTTSIFFPSAKRADSGNYKLKV----KNELGEDEAIFEVIVQ 93
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSIL 189
P I V G+ V+L G +W + I + + GS L
Sbjct: 7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
I +E G Y + EN +G + + + V P
Sbjct: 66 TILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 101
Score = 52.7 bits (127), Expect = 5e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 225 APVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
P I P+ R G++++ L V P W+K + + ++H + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVE----LFGKVTGTQPITCTWMKFR--KQIQESEHMKVEN-- 58
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + ++ + G Y NKLG+ + V L P PP PS
Sbjct: 59 ---SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-PPAGTPSG 110
Score = 41.9 bits (99), Expect = 4e-05
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 23/120 (19%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSS 77
++ P I ++Q G +VEL V WMK R ++ E
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMK-FRKQIQE--------- 50
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP 135
+ S L + ++ G Y V N A+V+L V P
Sbjct: 51 ----SEHMKVENSENGSK--LTILAARQEHCGCYTLLV---ENKLGSRQAQVNLTVVDKP 101
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 70.9 bits (174), Expect = 2e-15
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG------- 180
PP R + V G +L+C G P P + W + + +
Sbjct: 7 SGDQGSPPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
G+ + L + D G Y C A N G+
Sbjct: 66 GAEHG---LLLTAALPTDAGVYVCRARNAAGE 94
Score = 54.7 bits (132), Expect = 9e-10
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 213 GTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNN 271
G + + + P PR + + + +L+C V PPP +VW K Q L +
Sbjct: 1 GPMKASSGDQGSPPCFLRF-PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGG--QQLAAS 57
Query: 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ S + + + + G Y+CRA N G + +
Sbjct: 58 ERLSFPA-----DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
Score = 43.9 bits (104), Expect = 6e-06
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G ELKC V P V+W K + + R + D +
Sbjct: 28 GAEAELKCVVL---GEPPPVVVWEKGGQQ--------------LAASERLSFPAD--GAE 68
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP 135
+ LL+ TDAG Y C+ N + A + V PP
Sbjct: 69 HGLLLTAALPTDAGVYVCRA---RNAAGEAYAAAAVTVLEPP 107
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.5 bits (173), Expect = 2e-15
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT---------GG 181
V P I T + + G+P P + W + +
Sbjct: 1 VHFAPTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L++ T + G Y +A+N GK + I+ P I
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
Score = 70.2 bits (172), Expect = 3e-15
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 222 VEFAPVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
V FAP IT + P + V+ P PA+ W +L +++
Sbjct: 1 VHFAPTITFLESPTSDH----HWCIPFTVKGNPKPALQWFYNG--AILNESKYICTKIHV 54
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T +++ G Y A N+ G EK +
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 31/121 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
PTI+++ + D + +V+ P + W +++
Sbjct: 5 PTITFL-ESPTSDHHWC--IPFTVK---GNPKPALQWFY--------------NGAILNE 44
Query: 82 DSRFAIRYDTASSTY---TLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPV 136
+ + T L + + + G Y G K ++ P
Sbjct: 45 SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHFMGWPG 101
Query: 137 I 137
I
Sbjct: 102 I 102
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 70.4 bits (173), Expect = 2e-15
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS- 187
+ P I+ RS V GQ + PT + W + + Y +
Sbjct: 3 FTLDHAPRIT-LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 188 ---ILKIPQITKEDRGTYYCVAENGVGK 212
L+I +D GTY V N G+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGE 89
Score = 51.9 bits (125), Expect = 7e-09
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 220 VEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISH 278
++ AP IT+ R + + +V++ P + W L + ++
Sbjct: 3 FTLDHAPRITLR-MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNG--VELQESSKIHYTN 59
Query: 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T+ ++ G+Y N G + L
Sbjct: 60 -----TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 35.0 bits (81), Expect = 0.007
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +VQ ++ V W + S+ S T
Sbjct: 23 GQNTRFILNVQ-SKPTAEVKWYHNGV--------------ELQESSKIHYTNT--SGVLT 65
Query: 98 LLVKDIQETDAGYYRCQ 114
L + D D+G YR
Sbjct: 66 LEILDCHTDDSGTYRAV 82
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 69.7 bits (171), Expect = 4e-15
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKE 197
L V EG+ +++C G PTP +SW+ + + P L I +T
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 198 DRGTYYCVAENGVGK 212
D G Y C+A N G+
Sbjct: 77 DAGIYTCIATNRAGQ 91
Score = 50.1 bits (120), Expect = 4e-08
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 221 EVEFAPVITV-PKPR---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
F P P G+ + ++C V P P + W + + + + + +
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCR----MDCKVSGLPTPDLSWQLDG--KPVRPDSAHKM 58
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
E ++ + + R G Y C A N+ G + ++EL V ++ PS
Sbjct: 59 LV----RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-----VAAKESGPS 108
Score = 38.1 bits (89), Expect = 6e-04
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P + G + C V P + W D V DS
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQL-DGKPVRP-------------DS 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPP 135
+ + ++L+++ + DAG Y C G + S ++L V
Sbjct: 55 AHKMLVR-ENGVHSLIIEPVTSRDAGIYTCIATNRAG---QNSFSLELVVAAKE 104
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 69.6 bits (170), Expect = 7e-15
Identities = 16/114 (14%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
+++ ++ + G T+ LKC ++ + W+ I ++++S+
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSG------FTIFLNEYPVLKNSK 55
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ + + + ++ ++ V ++ D G Y+C ++ + EV + V
Sbjct: 56 YQLLHHS-ANQLSITVPNVTLQDEGVYKCLHY--SDSVSTKEVKVIVLATMKGE 106
Score = 54.2 bits (130), Expect = 2e-09
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI------- 188
N T ++ V EGQ + L+C + W + + + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
+ +P +T +D G Y C+ + + + V V +
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATMKGEFCRY 110
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTN------NQHYSISHFATADEFTDTTIRVITIEKR 298
L+C ++ W+ + N N Y + H +I V + +
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNVTLQ 76
Query: 299 QYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
G Y C S K V++ PS PL +
Sbjct: 77 DEGVYKCL-HYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEH 119
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 73.4 bits (179), Expect = 7e-15
Identities = 38/318 (11%), Positives = 88/318 (27%), Gaps = 47/318 (14%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIW-MKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
+ I GG+V + CS Q + + + ++ P
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLP--------------------- 45
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
++ + ++ + C + + +A+ L V P + + G
Sbjct: 46 -GNNRKVYELSNV--QEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVG 101
Query: 151 QPVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY-CVA 206
+ + L C GG P + R + + + ++ G + C
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT 161
Query: 207 ENGVG-------KGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECHVEAYPPPAI 257
E + + T ++ P + PR+ + + C ++ P +
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT-QGTVVCSLDGLFPVSE 220
Query: 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
+ + +Q + + D F+ +T E C + E
Sbjct: 221 AQVH-----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 318 VELFESIIPVCPPQTQPS 335
+ P P +
Sbjct: 276 QTVTIYSFP--APNVILT 291
Score = 62.6 bits (151), Expect = 3e-11
Identities = 35/227 (15%), Positives = 64/227 (28%), Gaps = 31/227 (13%)
Query: 19 TTAQRTPTISYIS-QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSS 77
T TP ++ + +G + L+C V+ P + V + + L
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG--APRANLTVVLLRGEKELKREPAVG 137
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEVDLQ 130
+ A T T+LV+ ++ + C+ + + + SA LQ
Sbjct: 138 ------------EPAEVTTTVLVR--RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSIL 189
P V+ + C G P Y
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 190 KIP---QITKEDRGTYYCVAENGVGKG---TRRNIAVEVEFAPVITV 230
+T ED GT +G T + + + AP + +
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 60.3 bits (145), Expect = 2e-10
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 30/210 (14%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGT 201
+++ G V + C + LP + G+ K+ +++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 202 YYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA--- 256
C + G+ T + + V + P V P P + ++ L C VE P A
Sbjct: 63 PMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGK-NLTLRCQVEGGAPRANLT 120
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG---- 312
+V ++ + + + E + T V+ ++ CR L
Sbjct: 121 VVLLRGEKE----------LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 313 ----TSEKTVELFESIIPVCPPQTQPSELL 338
+ +L ++P PPQ +L
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVL 200
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.5 bits (170), Expect = 7e-15
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 13/115 (11%)
Query: 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT------- 179
V L V PP + +E G+P P + W + +
Sbjct: 1 VALTVYYPPRV----VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 180 -GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
L + T + G Y +A+N +G + I P
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVS 110
Score = 68.7 bits (168), Expect = 1e-14
Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+A+ V + P + + L+ + +E V PPP + W+ Q L ++ +
Sbjct: 1 VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNG--QPLRESKIIHV- 54
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
+ E ++ + G+Y A N LGT+ +T+ P + P+
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 114
Query: 338 LPL 340
+ +
Sbjct: 115 ITV 117
Score = 33.3 bits (76), Expect = 0.032
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 79 IIRDSRFAIRY--DTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP 134
+ + Y + S LL + G Y +G + ++ +
Sbjct: 46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG---TANQTINGHFLKE 102
Query: 135 PVISDNS 141
P D
Sbjct: 103 PFPVDEV 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 74.8 bits (184), Expect = 8e-15
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSI 188
R I D + + V EG VQ C A G P P I W ++ +++
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L++ +D GTY C+A N G + + V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDS-MPAHLHV 475
Score = 47.4 bits (113), Expect = 5e-06
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 225 APVITVPKP-----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
I K G +Q C + PPPAI+W+ + +++ + ++
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQ----FVCRADGDPPPAILWLS-PRKHLVSAKSNGRLT-- 436
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
F D T+ V + + G+Y+C AAN G L
Sbjct: 437 ----VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 32.8 bits (75), Expect = 0.21
Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 21/110 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
+Q+ D G TV+ C P I R + +S S + R
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRA-DGDPPPAILWLSPRKHL-----VSAKS-----NGR 434
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVR 132
+ D TL V+ Q D G Y C I N S L VR
Sbjct: 435 LTVFPDG-----TLEVRYAQVQDNGTYLC---IAANAGGNDSMPAHLHVR 476
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 68.5 bits (168), Expect = 1e-14
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSI 188
PP ++ + EG+ +++ G P P +SW +
Sbjct: 5 PPRFI-QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 189 LKIPQITKEDRGTYYCVAENGVGK 212
L + D G Y CVA+N G+
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGE 87
Score = 48.9 bits (117), Expect = 1e-07
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
++ V P P + W + + ++ + + E ++ + G+Y
Sbjct: 25 MDFKVSGLPAPDVSWYLNG--RTVQSDDLHKMIV----SEKGLHSLIFEVVRASDAGAYA 78
Query: 305 CRAANKLGTSEKTVEL 320
C A N+ G + TV+L
Sbjct: 79 CVAKNRAGEATFTVQL 94
Score = 33.1 bits (76), Expect = 0.029
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 17/90 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P + + D G + V P V W + V D
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVS-GLPAPDVSWYL-NGRTVQS-------------DD 50
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRC 113
+ ++L+ + ++ +DAG Y C
Sbjct: 51 LHKMIVSE-KGLHSLIFEVVRASDAGAYAC 79
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 71.4 bits (175), Expect = 1e-14
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS 187
P + + EG V + C +P+ ISW R+ + + S + S
Sbjct: 19 APKLQGPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
L++ ++ D G Y C A N +G+ + P
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTP 114
Score = 69.1 bits (169), Expect = 8e-14
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVEAYPPPA 256
TY + V + +AP + P G + + C V AYP
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVN----ITCEVFAYPSAT 49
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
I W ++ Q+L ++ + +I + T + + + V + +G+Y C A N++G
Sbjct: 50 ISWFRDG--QLLPSSNYSNIKIYNTP---SASYLEVTPDSENDFGNYNCTAVNRIGQESL 104
Query: 317 TVEL 320
L
Sbjct: 105 EFIL 108
Score = 46.0 bits (109), Expect = 5e-06
Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 25/131 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + G V + C V + W + + LP S S
Sbjct: 20 PKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDG-----QLLPSSN-------YSN 66
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPP-----VI 137
I ++S L V E D G Y C + IG + S E L P
Sbjct: 67 IKIYNTPSASY--LEVTPDSENDFGNYNCTAVNRIG---QESLEFILVQADTPSSPSIDQ 121
Query: 138 SDNSTRSLVVS 148
+ + + V
Sbjct: 122 VEPYSSTAQVQ 132
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 67.3 bits (165), Expect = 2e-14
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKE 197
+S V +G G P P W + I + L I +T E
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE 72
Query: 198 DRGTYYCVAENGVGK 212
D + A N G+
Sbjct: 73 DSASIMVKAINIAGE 87
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 8/97 (8%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
AP I + Q D V P P W K + +
Sbjct: 5 APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG--VKIERSDRIYWYW----P 57
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
E + + + S + +A N G + L
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Score = 33.4 bits (77), Expect = 0.023
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 17/77 (22%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + V + P W K N V I R R + +
Sbjct: 20 GSDAHFRVRVV-GKPDPECEWYK---NGV-----------KIERSDRIYWYWPE-DNVCE 63
Query: 98 LLVKDIQETDAGYYRCQ 114
L+++D+ D+ +
Sbjct: 64 LVIRDVTGEDSASIMVK 80
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 67.7 bits (165), Expect = 3e-14
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G T+ ++C + W K V L S+ + SRF I D + +
Sbjct: 25 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 84
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
T+ + D++E D+G+Y C++ +N +S V +
Sbjct: 85 TVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 119
Score = 32.3 bits (73), Expect = 0.077
Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 22/108 (20%)
Query: 138 SDNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRRENNAILPT--------GGSIYRG- 186
+ + + L GQ + + C + W +E +A++ +
Sbjct: 13 AQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSR 72
Query: 187 -SI----------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+I + + + +ED G Y+C +++ +
Sbjct: 73 FTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 68.4 bits (167), Expect = 5e-14
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 23/178 (12%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+ G V V+W K ++KV E +S S F R + + +
Sbjct: 9 VYGNVTFHVPSNVPLKE-VLWKK-QKDKVAE-----LENSEFRAFSSFKNRVYLDTVSGS 61
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + ++ +D Y + N + + L V ++ ++ E L C
Sbjct: 62 LTIYNLTSSDEDEYEMES---PNITDTMKFFLYVLEMV------SKPMIYWECSNATLTC 112
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+ + + + R + C A N V + +
Sbjct: 113 EVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQESE 163
Score = 57.6 bits (139), Expect = 3e-10
Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 47/202 (23%)
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------PTGGSIYRGSI------- 188
++ + V P + W+++ + + S ++ +
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
L I +T D Y + N + V V KP + + L C
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDT---MKFFLYV-LEMV---SKPMIYWECS-NATLTC 112
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
V + + ++ L + + ++S+ + C+A
Sbjct: 113 EVLEGTDVELKLYQG--KEHLRSLRQKTMSY----------------QWTNLRAPFKCKA 154
Query: 308 ANKLGTSEKTVELFESIIPVCP 329
N++ S+++ E + CP
Sbjct: 155 VNRV--SQES----EMEVVNCP 170
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 69.2 bits (168), Expect = 6e-14
Identities = 29/198 (14%), Positives = 45/198 (22%), Gaps = 41/198 (20%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCV 205
E V L C I+W ++ I + K+ RG Y C
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSNAKDPRGMYQCK 67
Query: 206 AENGVGK-----------GTRRNIAVEVEFAPVITVPKPRLGQALQYD------------ 242
K + A + + A K +
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 243 ---MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
+ L C YP I+W D + + ++ D E Q
Sbjct: 128 GTTVILTC--PQYPGSEILWQHND--KNIGGDEDDKNIG-----SDEDHLSLKEFSELEQ 178
Query: 300 YGSYICRAANKLGTSEKT 317
G Y+C
Sbjct: 179 SGYYVCYPRGSKPEDANF 196
Score = 61.4 bits (148), Expect = 3e-11
Identities = 28/206 (13%), Positives = 47/206 (22%), Gaps = 57/206 (27%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G+V L C + + W K + I +
Sbjct: 18 DGSVLLTCDAEAK---NITWFKDGK-------MIGFLTE----------------DKKKW 51
Query: 99 LVKDIQETDAGYYRCQ-------------------------VIIGINNKISAEVDLQVRR 133
+ + G Y+C+ K A+ D
Sbjct: 52 NLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILK 190
+ T V G V L C +P I W+ + I L
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 169
Query: 191 IPQITK-EDRGTYYCVAENGVGKGTR 215
+ + ++ E G Y C +
Sbjct: 170 LKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 34.5 bits (78), Expect = 0.038
Identities = 13/123 (10%), Positives = 27/123 (21%), Gaps = 17/123 (13%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C I W K D + + + + + K G Y
Sbjct: 23 LTCDA---EAKNITWFK-DGKMIGFLTED-------------KKKWNLGSNAKDPRGMYQ 65
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTSWEPQRKQLN 364
C+ + + S + + E+ +++
Sbjct: 66 CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVS 125
Query: 365 CSS 367
S
Sbjct: 126 ISG 128
Score = 32.2 bits (72), Expect = 0.18
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 20/95 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G TV L C + ++W D+ + I D L
Sbjct: 128 GTTVILTCPQYPGSE--ILWQHNDK-----NIGGDEDDKNIGSDED------------HL 168
Query: 99 LVKDIQET-DAGYYRCQVIIGINNKISAEVDLQVR 132
+K+ E +GYY C + + L+ R
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 65.5 bits (159), Expect = 2e-13
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-- 185
D+ + I +S G+ + L C A I + E + +
Sbjct: 9 DVVLSPSHGIE--------LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 186 ------------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
S L I +T+ D+G Y C A +G+ + + V V P +
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAF 116
Score = 45.1 bits (106), Expect = 3e-06
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 227 VITVPKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
V++ +G+ L L C I + E + + + +
Sbjct: 11 VLSPSHGIELSVGEKLV----LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 284 EFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
+ +TI+ G Y C A++ L T + + +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
Score = 44.7 bits (105), Expect = 4e-06
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L C+ + + + + + + L+ RD + + TL
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQH------KKLVNRDLKTQSGSEMKKFLSTL 76
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ + +D G Y C G+ K ++V P ++
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVA 115
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 67.6 bits (164), Expect = 2e-13
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 17/198 (8%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSIL 189
++ P+ + + V+ G QL C + WR + + L S S+L
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+ + GT CV G + + + V P P + D ++ C
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVYAFPNQLTVSPA--ALVPGDPEVACTA 118
Query: 250 EAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADE--------FTDTTIRVITIEKR 298
P A+ + Q L Q +E F T +
Sbjct: 119 HKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT 178
Query: 299 QYG-SYICRAANKLGTSE 315
+ C+A +L E
Sbjct: 179 PVPPALYCQATMRLPGLE 196
Score = 38.3 bits (88), Expect = 0.002
Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 29/138 (21%)
Query: 38 IGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
+G + +L C + A V W +D L + +
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLD-----TSLG----------------AVQSDTGRS 59
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
L V++ + AG C G V L V P + T S ++
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVA 115
Query: 157 CFA-GGHPT--PRISWRR 171
C A P +S+
Sbjct: 116 CTAHKVTPVDPNALSFSL 133
Score = 30.3 bits (67), Expect = 0.83
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 223 EFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
+ P+P + AL L C + A ++ W DT L Q +
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS--LGAVQSDT------ 56
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLP 339
+ + V G+ +C + T + TV+L P P+ L+P
Sbjct: 57 ----GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN-QLTVSPAALVP 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 68.3 bits (167), Expect = 7e-13
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGSILKIPQIT 195
+ + G + + C ++ N +L G + R L ++
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEV 222
ED G Y C A T ++ ++V
Sbjct: 310 VEDGGVYTCYAMGETFNET-LSVELKV 335
Score = 50.2 bits (120), Expect = 5e-07
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 216 RNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ 272
NI F + + LG L + C + + W+ +QVL+
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTLT----IRCDTKQQGMTKV-WVSPSNEQVLSQGS 292
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ S+S + + ++ G Y C A + +VEL +
Sbjct: 293 NGSVS-------VRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
Score = 41.8 bits (98), Expect = 2e-04
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T+ ++C + Q +W+ +V + S+ +R+ L
Sbjct: 261 GDTLTIRCDTK-QQGMTKVWVSPSNEQVL---SQGSNGSVSVRNG-------------DL 303
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
K +Q D G Y C + + V+L+V + + T + Q E
Sbjct: 304 FFKKVQVEDGGVYTC---YAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQFE 360
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 63.8 bits (155), Expect = 9e-13
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G++ ++C Y Y W + + + L ++GS ++ R +I+ + + T
Sbjct: 17 RGSLTVQC--VYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRT 74
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+T+ ++D+ +TDA Y C + N + V + + PV + ++ S
Sbjct: 75 FTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETSSS 122
Score = 37.2 bits (86), Expect = 0.002
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISW-----RRENNAILPTGGSIY-----RGSI--- 188
++ E + ++C + G T W R+ ++ T GS R SI
Sbjct: 10 TTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDN 69
Query: 189 -------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
+ + + K D TY+C E G + V ++ APV
Sbjct: 70 QKNRTFTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEE 118
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 62.7 bits (153), Expect = 9e-13
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG--GSIYRG--SILKIPQITKE 197
V EG V+ C + +++W + + Y +IL + ITK
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKL 68
Query: 198 DRGTYYCVAENGVGK 212
D GTY C N G+
Sbjct: 69 DDGTYRCKVVNDYGE 83
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 245 LECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
C +E Y + W + L N++ Y I++ E + V I K G+Y
Sbjct: 21 YVCKIENYDQSTQVTWYFGV--RQLENSEKYEITY-----EDGVAILYVKDITKLDDGTY 73
Query: 304 ICRAANKLGTSEKTVELF 321
C+ N G ELF
Sbjct: 74 RCKVVNDYGEDSSYAELF 91
Score = 42.3 bits (100), Expect = 2e-05
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 30/112 (26%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
QI GG V+ C ++ D V W R + ++
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIE-NYDQSTQVTWYFGVR--------------QLENSEKYE 50
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPP 135
I Y+ L VKDI + D G YRC+V+ N S+ +L V+
Sbjct: 51 ITYE--DGVAILYVKDITKLDDGTYRCKVV----NDYGEDSSYAELFVKGVR 96
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 67.9 bits (166), Expect = 1e-12
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI---- 188
PVI + L V+EG +L+C A +SW N ++ G R ++
Sbjct: 340 YAPVIVE-PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRR 216
L +T +D G Y C+ N VG T
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
Score = 45.1 bits (107), Expect = 2e-05
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285
PVI P L +L+C ++ WI V+T+ ++
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWIT-PNGTVMTHG-----AYKVRIAVL 394
Query: 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+D T+ + + G Y C +N +G + + L
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 39.7 bits (93), Expect = 0.001
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 21/113 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I + G ELKC + V W+ + +T R
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTSLT-SVSWITPNGTVMTHG----------AYKVR 390
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP 135
A+ D TL ++ D G Y C + N+ +A L V
Sbjct: 391 IAVLSD-----GTLNFTNVTVQDTGMYTC---MVSNSVGNTTASATLNVTGTH 435
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 65.3 bits (159), Expect = 2e-12
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 24/173 (13%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD-SRFAIRYDTASSTYT 97
G+V+++C Q ++ + + + +N + I F I +
Sbjct: 23 DGSVKIQC--QAIREAYLTQLMIIKN--STYREIGRRLKFWNETDPEFVIDH-------- 70
Query: 98 LLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPV 153
+ AG Y+CQ IG + S ++L V P +S + R LV+ G+ +
Sbjct: 71 -----MDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS--ADRGLVLMPGENI 123
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA 206
L C + P R S +E LP S + + + G Y C
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176
Score = 47.9 bits (114), Expect = 1e-06
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 20/185 (10%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGS---I 188
P IS S S V+ V+++C ++ + + +
Sbjct: 8 PMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65
Query: 189 LKIPQITKEDRGTYYCVAENGVG---KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
I + G Y C G + V + L ++ L
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL 125
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C P KE + QH S H A F ++ + + G Y C
Sbjct: 126 TCSSAHIPFDRFSLAKEGELSLP---QHQSGEHPA---NF---SLGPVDLNVS--GIYRC 174
Query: 306 RAANK 310
Sbjct: 175 YGWYN 179
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 62.9 bits (152), Expect = 3e-12
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
GGTV LKC V+ +D + W + + G +RD+R + T ++
Sbjct: 53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLY------FGEKRALRDNRIQLVTST-PHELSI 105
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ ++ D G Y C + +A+ + V P
Sbjct: 106 SISNVALADEGEYTCSI--FTMPVRTAKSLVTVLGIP 140
Score = 49.8 bits (118), Expect = 1e-07
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI----- 188
S T V G V L+C H + W L G R +
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 189 ----LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-FAPVI 228
+ I + D G Y C + + + V P+I
Sbjct: 101 HELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPII 145
Score = 34.0 bits (77), Expect = 0.028
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQ------QVLTNNQHYSISHFATADEFTDTTIRVITI 295
+ L+C V+ + ++ W Q + + + T E +I + +
Sbjct: 55 TVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS-TPHEL---SISISNV 110
Query: 296 EKRQYGSYIC 305
G Y C
Sbjct: 111 ALADEGEYTC 120
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 60.5 bits (147), Expect = 8e-12
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-----S 182
+ ++ + VS+G ++L + W + I +G S
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 183 IYRGSILKIPQITKEDRGTYYCVAEN 208
I L I Q + D Y CV
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVVGG 93
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 219 AVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+++ + + Q + + + L + + W+K Q++ + Y
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG-QEIQMSGSKYIFE 66
Query: 278 HFATADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVE 319
R +TI + +Y C + ++E V+
Sbjct: 67 S--------IGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L + D V W+K + ++ S++ + TL
Sbjct: 31 GHKIRLTVELA-DHDAEVKWLK-NGQEIQMS------------GSKYIFESI--GAKRTL 74
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEV 127
+ D Y+C V K S E+
Sbjct: 75 TISQCSLADDAAYQCVV---GGEKCSTEL 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.5 bits (147), Expect = 9e-12
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 18/118 (15%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
+ +Q RR +I D + V EG C + W + +
Sbjct: 4 GSSGLVQGRRVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE 61
Query: 181 -----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
G + L + Q+ +D GT Y A + + V P +
Sbjct: 62 IDAQPGGYHV---LTLRQLALKDSGTIYFEAGDQRASAA-----LRVTEKPSVFSRSG 111
Score = 43.9 bits (104), Expect = 7e-06
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 18 LTTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS 73
R I E ++D+ G + +C + A PV W
Sbjct: 7 GLVQGRRVHII----EDLEDVDVQEGSSATFRCRISPANYEPVHWFL------------- 49
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
+ + + I + L ++ + D+G + A L+V
Sbjct: 50 -DKTPLHANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEA-----GDQRASAALRVTE 102
Query: 134 PPVI 137
P +
Sbjct: 103 KPSV 106
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
C + + W + L N+ I + V+T+ + G
Sbjct: 33 FRCRISPANYEPVHWFLDK--TPLHANELNEI-------DAQPGGYHVLTLRQLALKDSG 83
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ A ++ ++ V S+ P +
Sbjct: 84 TIYFEAGDQRASAALRVTEKPSVFSRSGPSS 114
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 61.3 bits (148), Expect = 1e-11
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 38/126 (30%)
Query: 134 PPVI----SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---- 185
PP I ++VV G ++L+ G P P + W++
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 186 -----------------------------GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216
SI + KED G Y +N VG+ +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 131
Query: 217 NIAVEV 222
N+ V+V
Sbjct: 132 NLTVKV 137
Score = 45.1 bits (106), Expect = 4e-06
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 35/136 (25%)
Query: 216 RNIAVEVEFAPVITVPKP---------RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQ 266
+ + P I + P G L+ L+ + P P ++W K TQ
Sbjct: 4 HHHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLR----LDVPISGDPAPTVIWQKAITQG 59
Query: 267 VLTNNQHYSISHFATA---------DEFTDTTIRV----------ITIEKRQY---GSYI 304
+ + T +T RV T+E + G Y
Sbjct: 60 NKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYT 119
Query: 305 CRAANKLGTSEKTVEL 320
N +G + + +
Sbjct: 120 VTVKNPVGEDQVNLTV 135
Score = 39.0 bits (90), Expect = 6e-04
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSL-------------IIRDSRF 85
G + L + VIW K P + + ++ ++
Sbjct: 33 GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 92
Query: 86 AIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
+R +T V+ ++ D G Y V N + ++V
Sbjct: 93 RVRVETTKDRSIFTVEGAEKEDEGVYTVTV----KNPVGEDQVNLTVKV 137
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 64.4 bits (157), Expect = 2e-11
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI---- 188
P I D + R L +SEG+ +L+C P + W N +L R S+
Sbjct: 351 SAPFIMD-APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L + D G Y C+ N G + + + V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441
Score = 47.8 bits (114), Expect = 3e-06
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
AP I L + +L+C P ++ W+ VL++ S
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLL-PNGTVLSHA-----SRHPRISV 403
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
D T+ + G Y C N G S + L S
Sbjct: 404 LNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 37.8 bits (88), Expect = 0.005
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 28/116 (24%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I ++ G ELKC P V W+ + ++ S
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP-----PMSSVKWLLPNGTVLS------HASR---- 397
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP 135
R ++ D TL + +D G Y C + N +A L V
Sbjct: 398 HPRISVLND-----GTLNFSHVLLSDTGVYTC---MVTNVAGNSNASAYLNVSTAG 445
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 59.9 bits (145), Expect = 2e-11
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V L S ++Y + W K+ E +S+F R +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVE----WDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDN 140
L + +Q+ D Y +V+ N+ ++ LQV P PVI
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIE 120
Score = 39.9 bits (93), Expect = 2e-04
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAIL--------PTGGSIYRGSI------ 188
+ V G V L + +++W + + S ++G +
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL 235
L I ++ KED TY G I ++V P VPKP +
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDP---VPKPVI 117
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 59.3 bits (144), Expect = 2e-11
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
G+ V+LEC + W + I+P S YR IL I TK
Sbjct: 15 EDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
D Y + G ++V+++ P
Sbjct: 74 ADAAEYSVMTTGGQSSA---KLSVDLKSGP 100
Score = 43.5 bits (103), Expect = 7e-06
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G VEL+C V D V W K I G SR+ IR + + L
Sbjct: 22 GERVELECEVSED-DANVKWFKNGE-------EIIPGPK-----SRYRIRVE--GKKHIL 66
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+++ + DA Y + SA++ + ++ P
Sbjct: 67 IIEGATKADAAEYSVMT---TGGQSSAKLSVDLKSGP 100
Score = 35.0 bits (81), Expect = 0.006
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
LEC V + W K + + Y I + ++ IE
Sbjct: 27 LECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV--------EGKKHILIIEGATKADAA 77
Query: 302 SYICRAANKLGTSEKTVEL 320
Y +++ +V+L
Sbjct: 78 EYSVMTTGGQSSAKLSVDL 96
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 59.3 bits (144), Expect = 2e-11
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
L V + +C W + + P+ G ++ L I +
Sbjct: 16 ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHK---LVIDDVR 71
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
ED G Y V + + + +E++
Sbjct: 72 PEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
Score = 47.8 bits (114), Expect = 3e-07
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 28/123 (22%)
Query: 19 TTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST 74
+ + + + I D+ KC V + W K
Sbjct: 3 SGSSGQLEVL----QDIADLTVKAAEQAVFKCEVS-DEKVTGKWYK-------------- 43
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
+ R I + + L++ D++ D G Y +S L
Sbjct: 44 NGVEVRPSKRITISHV--GRFHKLVIDDVRPEDEGDYTFVP---DGYALSLSAKLNFLEI 98
Query: 135 PVI 137
V
Sbjct: 99 KVS 101
Score = 37.8 bits (88), Expect = 7e-04
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 20/94 (21%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+C V W K + ++ +ISH + I+ + G
Sbjct: 28 FKCEVSD-EKVTGKWYKNG--VEVRPSKRITISH--------VGRFHKLVIDDVRPEDEG 76
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
Y + + E + PS
Sbjct: 77 DYTFVPDGYALSLSAKLNFLE------IKVSGPS 104
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 59.0 bits (143), Expect = 4e-11
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
S+ ++ + + + V L C P + W ++ ++ +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALL 60
Query: 181 ----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRL 235
++ R L +P + ED G Y C ++ T V V PV I P
Sbjct: 61 LQKEDTVRR---LVLPAVQLEDSGEYLCEIDDESASFT-----VTVTEPPVRIIYSGPSS 112
Query: 236 G 236
G
Sbjct: 113 G 113
Score = 42.8 bits (101), Expect = 1e-05
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V L C + + + V W K D +V E ++ + +
Sbjct: 28 LERVVLTCEL--CRPWAEVRWTK-DGEEVVE-------------SPALLLQKE--DTVRR 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
L++ +Q D+G Y C++ + SA + V PPV
Sbjct: 70 LVLPAVQLEDSGEYLCEI-----DDESASFTVTVTEPPV 103
Score = 35.1 bits (81), Expect = 0.008
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L C + P + W K+ + + + + + T+R + + Q G
Sbjct: 33 LTCEL-CRPWAEVRWTKDG--EEVVESPALLLQK--------EDTVRRLVLPAVQLEDSG 81
Query: 302 SYICRAANKLGTSEKTVE 319
Y+C ++ + TV
Sbjct: 82 EYLCEIDDESASFTVTVT 99
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 58.7 bits (142), Expect = 4e-11
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 39 GGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G ++ ++C + +W + +PL +S+ R D
Sbjct: 12 GSSILVQCHYRLQDVKAQKVWCRFLPEG-CQPL-VSSAVDRRAPAGRRTFLTDLGGGLLQ 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + +QE DAG Y C V +I V L + PP
Sbjct: 70 VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI-LPP 106
Score = 33.7 bits (77), Expect = 0.019
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 19/99 (19%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRREN--------NAILPTGGSIYRGSILKIP- 192
L G + ++C + + W R ++ + R + L
Sbjct: 5 EVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLG 64
Query: 193 ---------QITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ +ED G Y C+ + G +++ +
Sbjct: 65 GGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 58.5 bits (142), Expect = 4e-11
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI--------LKIPQI 194
V G V++ ++ W + + R L +
Sbjct: 16 EDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74
Query: 195 TKEDRGTYYCVAENG 209
+EDRG Y + G
Sbjct: 75 VQEDRGRYQVITNGG 89
Score = 40.8 bits (96), Expect = 6e-05
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS--STY 96
G VE+ V V+WMK + R+ F RY +
Sbjct: 23 GDRVEMAVEVSEE-GAQVMWMK--------------NGVELTREDSFKARYRFKKDGKRH 67
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L+ D+ + D G Y+ + AE+ ++ ++
Sbjct: 68 ILIFSDVVQEDRGRYQVIT---NGGQCEAELIVEEKQ 101
Score = 32.3 bits (74), Expect = 0.054
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEKRQYGSY 303
+ V + ++W+K LT + + D + E G Y
Sbjct: 28 MAVEV-SEEGAQVMWMKNG--VELTREDSFKARYRFKKDGKRHILIFSDVVQE--DRGRY 82
Query: 304 ICRAANKLGTSEKTVE 319
+E VE
Sbjct: 83 QVITNGGQCEAELIVE 98
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.2 bits (141), Expect = 5e-11
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 14/93 (15%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQI 194
+++ V EG+ EC + + W + + G Y L + +
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI---LVVREA 72
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227
D G K + + V P
Sbjct: 73 APSDAGEVVFSVRGLTSKAS---LIVRERSGPS 102
Score = 45.5 bits (108), Expect = 1e-06
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 22/101 (21%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + +C + + +W G + SRF Y
Sbjct: 23 GESCSFECVLSHESASDPAMWTV--------------GGKTVGSSSRFQATRQ--GRKYI 66
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
L+V++ +DAG V ++++ L VR S
Sbjct: 67 LVVREAAPSDAGEVVFSV-----RGLTSKASLIVRERSGPS 102
Score = 36.6 bits (85), Expect = 0.002
Identities = 5/79 (6%), Positives = 19/79 (24%), Gaps = 14/79 (17%)
Query: 245 LECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY--- 300
EC + +W + + ++ + + ++ + +
Sbjct: 28 FECVLSHESASDPAMWTVGG--KTVGSSSRFQATR--------QGRKYILVVREAAPSDA 77
Query: 301 GSYICRAANKLGTSEKTVE 319
G + + V
Sbjct: 78 GEVVFSVRGLTSKASLIVR 96
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 61.5 bits (149), Expect = 1e-10
Identities = 44/303 (14%), Positives = 85/303 (28%), Gaps = 46/303 (15%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPL----PISTGSSLIIRDSRFAIRYDTAS 93
G + L C+V P+ W + E + + +S +
Sbjct: 18 GESAILHCTVTSLIPVGPIQWFR-GAGPARELIYNQKEGHFPRVTTVSEST-----KREN 71
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRRPPVISDNSTRSLVVSE 149
+++ + +I DAG Y C + K A +L VR P S + +
Sbjct: 72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP 131
Query: 150 GQPVQLECFAGG--HPTPRISWRRENNAILPTG---------GSIYRG-SILKIPQITKE 197
V C + G + W + N L Y S K+ ++
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTRED 190
Query: 198 DRGTYYCVAEN--GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255
C + G R + T+ + + +++ C V + P
Sbjct: 191 VHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250
Query: 256 AI--VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV---ITIEKRQY---GSYICRA 307
+ W++ N +T E D T + + + C+
Sbjct: 251 RLQLTWLE--------NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQV 302
Query: 308 ANK 310
+
Sbjct: 303 EHD 305
Score = 54.6 bits (131), Expect = 2e-08
Identities = 41/250 (16%), Positives = 75/250 (30%), Gaps = 37/250 (14%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP------ 178
E +LQV +P +S+ V+ G+ L C P I W R
Sbjct: 1 EEELQVIQPD-------KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQK 53
Query: 179 ----TGGSIYRGSI--------LKIPQITKEDRGTYYCVAENG------VGKGTRRNIAV 220
+ S + I IT D GTYYCV G ++V
Sbjct: 54 EGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV 113
Query: 221 EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ + + P Q+ + C + P + ++ ++ +
Sbjct: 114 RAKPSAPVVSG-PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVG- 171
Query: 280 ATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELL 338
+ ++ T +V+ + + IC A+ + + P T
Sbjct: 172 -ESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ 230
Query: 339 PLRNVNMAVI 348
P+R N +
Sbjct: 231 PVRAENQVNV 240
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 59.3 bits (143), Expect = 1e-10
Identities = 29/177 (16%), Positives = 46/177 (25%), Gaps = 15/177 (8%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
R V G + L C R G R ++ I E
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIR-EPET 64
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA-- 256
C + + + P V +P P + + L C V P A
Sbjct: 65 QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGE-NFTLSCRVPGAGPRASL 122
Query: 257 -IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+ ++ Q L S + T V+ + ++ CRA L
Sbjct: 123 TLTLLRGA--QELIRR---SFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 48.5 bits (115), Expect = 7e-07
Identities = 22/183 (12%), Positives = 44/183 (24%), Gaps = 33/183 (18%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
GG++ L CS + R T+
Sbjct: 16 RGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWL----------------------A 53
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
+ DI+E C + A ++ + P + G+ L C
Sbjct: 54 RQLVDIRE-PETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSC 111
Query: 158 FA-GGHPTPR--ISWRRENNAILP------TGGSIYRGSILKIPQITKEDRGTYYCVAEN 208
G P ++ R ++ + + ++ + C AE
Sbjct: 112 RVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Query: 209 GVG 211
+
Sbjct: 172 DLR 174
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 61.2 bits (148), Expect = 1e-10
Identities = 41/314 (13%), Positives = 81/314 (25%), Gaps = 39/314 (12%)
Query: 31 SQEQIKDIGGTVELKCSVQ--YAQDYPVIWMK---VDRNKVTEPLPISTGSSLIIRDSRF 85
S + T++L C V + W++ V ++ G
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGE--------- 66
Query: 86 AIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTR 143
AS+ L + Y CQV + + R +
Sbjct: 67 -----LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPS 121
Query: 144 SLVVSEGQPVQLECFAGG----HPTPRISWRRENNAILPTG--------GSIYRG-SILK 190
+ + + C T +++W R + + S L
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181
Query: 191 IPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
+ + TY C + AP + + L C
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLAC 241
Query: 248 HVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYIC 305
++ P V + Q+ + F + +T + Q +IC
Sbjct: 242 LIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFIC 301
Query: 306 RAANKLGTSEKTVE 319
RA ++ + +TV+
Sbjct: 302 RAVHEAASPSQTVQ 315
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 56.9 bits (138), Expect = 1e-10
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
V+ G+ V+L C TP + W ++ AI + G++ L I +
Sbjct: 16 EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGAS 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
+D G Y C E +
Sbjct: 72 LKDAGEYTCEVEASKSTAS 90
Score = 45.8 bits (109), Expect = 1e-06
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G VEL+C + PV W+K I + ++ + + + L
Sbjct: 23 GEDVELRCELS-RAGTPVHWLK--------------DRKAIRKSQKYDVVCE--GTMAML 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAE--VDLQVRRPP 135
+++ DAG Y C+V +K +A V+ + P
Sbjct: 66 VIRGASLKDAGEYTCEV---EASKSTASLHVEEKASGPS 101
Score = 41.1 bits (97), Expect = 4e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L C + P + W+K+ + + +Q Y + + T+ ++ I G
Sbjct: 28 LRCELSRAGTP-VHWLKDR--KAIRKSQKYDVVC--------EGTMAMLVIRGASLKDAG 76
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQT 332
Y C T+ VE P +
Sbjct: 77 EYTCEVEASKSTASLHVEE-----KASGPSS 102
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.0 bits (137), Expect = 1e-10
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAI------------LPTG 180
P I+ + G V C A +W +N A+ G
Sbjct: 11 PQITVQPE-TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ +IL++ + G Y CV N G + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 42.8 bits (100), Expect = 1e-05
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I+ + Q G V CS + D P+ + N+ + + + L +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG- 69
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ T L +++++ T G Y+C + + S L +
Sbjct: 70 -----ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 37.4 bits (86), Expect = 0.001
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 226 PVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
P ITV P+ G + C + + + + L + + + +H
Sbjct: 11 PQITVQPETQSAIXGSDVS----FTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 282 ADEFTDTTIRVITIEKRQY---GSYICRAANKLGTS 314
++ + ++ G Y C +N G+S
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 57.3 bits (138), Expect = 2e-10
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 22/114 (19%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAG---GHPTPRISWRRENNAILPT----------- 179
P + + C G P P + W + + T
Sbjct: 3 MPASVQ-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
R L++ Q T + G Y +A N G+ +I P P+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEFNPED 108
Score = 55.3 bits (133), Expect = 8e-10
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 8/121 (6%)
Query: 224 FAPVITVPKPRLGQALQY-DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282
P +L A++ + V+ P P++ W+ + T+ A
Sbjct: 2 HMPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
+ +R+ G+Y AAN G + ++ P + P + +P N
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA---AFMDNPFEFNPEDPIPDTN 114
Query: 343 V 343
Sbjct: 115 S 115
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR 133
+ I + L + + G Y G + SA +
Sbjct: 43 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFMD 99
Query: 134 PPVISD--NSTRSLVVSEGQPVQLE 156
P + + + G PV+ +
Sbjct: 100 NPFEFNPEDPIPDTNSTSGDPVEKK 124
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 56.6 bits (137), Expect = 2e-10
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 121 NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ S +V + + P + + G L C ++W ++ + +
Sbjct: 3 SGSSGKV-VFAKEQPAHRE-----VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS 55
Query: 181 G----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
++ L + Q + + G Y C A
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
Score = 41.2 bits (97), Expect = 5e-05
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + L C V AQ V W K D K++ S+ + T
Sbjct: 26 GASATLSCEV--AQAQTEVTWYK-DGKKLSS-------------SSKVRVEAV--GCTRR 67
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
L+V+ + +AG Y C+ G ++S + + +
Sbjct: 68 LVVQQAGQAEAGEYSCEA--G-GQQLSFRLQVAGQ 99
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 221 EVEFAPVITVPKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+V FA + G + L C V + W K+ + L+++ +
Sbjct: 8 KVVFAKEQPAHREVQAEAGASAT----LSCEVAQ-AQTEVTWYKDG--KKLSSSSKVRVE 60
Query: 278 HFATADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVE 319
R + +++ G Y C A + + V
Sbjct: 61 A--------VGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 60.3 bits (146), Expect = 2e-10
Identities = 43/312 (13%), Positives = 78/312 (25%), Gaps = 52/312 (16%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ Q P +S + GG V L+C ++ + + K DR +
Sbjct: 16 GSHMGGQDKPFLS-AWPSAVVPRGGHVTLRCHYRHRFNN-FMLYKEDRIHIPI------- 66
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQV 131
+ + + + AG Y C+ + S V + V
Sbjct: 67 -------------FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV 113
Query: 132 ---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP-----TGGSI 183
R P + + +V G+ V L+C +E + P
Sbjct: 114 TGNHRKPSLLAH--PGPLVKSGERVILQC-WSDIMFEHFFLHKEGISKDPSRLVGQIHDG 170
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRR------NIAVEVEFAPVITVPKPRLGQ 237
+ I + GTY C +I V + +P
Sbjct: 171 VSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV 230
Query: 238 ALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ L C +E ++ AD +
Sbjct: 231 QAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQAD------FPLGPAT- 282
Query: 298 RQYGSYICRAAN 309
G+Y C +
Sbjct: 283 -HGGTYRCFGSF 293
Score = 49.9 bits (119), Expect = 5e-07
Identities = 31/205 (15%), Positives = 54/205 (26%), Gaps = 27/205 (13%)
Query: 124 SAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ + P +S S VV G V L C H +E+ +P
Sbjct: 11 DDDDKGSHMGGQDKPFLSAWP--SAVVPRGGHVTLRC-HYRHRFNNFMLYKEDRIHIPIF 67
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL----- 235
+ +T G Y C + + V KP L
Sbjct: 68 HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 236 -----GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTI 290
G+ + L+C + KE + + + A F +I
Sbjct: 128 PLVKSGERVI----LQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKA-NF---SI 178
Query: 291 RVITIEKRQYGSYICRAANKLGTSE 315
+ + G+Y C + +
Sbjct: 179 GPMMLALA--GTYRCYGSVTHTPYQ 201
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.2 bits (136), Expect = 2e-10
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
S L++ P V+ G+ + L+C + + W + + +
Sbjct: 3 SGSSGLKILTPL-------TDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLK 53
Query: 181 ----GSIYRGSILKIPQITKEDRGTYYCVAENG 209
G I++ L I ED G Y +
Sbjct: 54 VVQKGRIHK---LVIANALTEDEGDYVFAPDAY 83
Score = 46.6 bits (111), Expect = 5e-07
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + LKC + +++ P W K + V E R + + L
Sbjct: 22 GKEICLKCEI--SENIPGKWTK-NGLPVQE-------------SDRLKVVQKG--RIHKL 63
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
++ + D G Y ++ + V P
Sbjct: 64 VIANALTEDEGDYVFAPDAY---NVTLPAKVHVISGP 97
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 56.9 bits (137), Expect = 2e-10
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTGGSIY-------------RG 186
+ V G+ + P I W + L + +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
++I + G Y C + +EV + T
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116
Score = 47.7 bits (113), Expect = 4e-07
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
Q +G + V+ + W K L G L ++++
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMD----LASKAGKHLQLKET---FE 67
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDN 140
+ T+ + + ++ AG YRC+V K S DL+V + N
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVT----YKDKFDSCSFDLEVHESTGTTPN 118
Score = 43.4 bits (102), Expect = 1e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 245 LECHVEAYP---PPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQY 300
V+A P I W K + + +H + T + + + I K +
Sbjct: 27 FIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE--TFERHSRVYTFEMQIIKAKD 84
Query: 301 ---GSYICRAANKLGTSEKTVEL 320
G+Y C K + +L
Sbjct: 85 NFAGNYRCEVTYKDKFDSCSFDL 107
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 56.2 bits (136), Expect = 2e-10
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRG 186
+ + V +G V+ P + W + I P+ G
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64
Query: 187 SILKIPQITKEDRGTYYCVAEN 208
L I D YY A +
Sbjct: 65 --LFINNCQMTDDSEYYVTAGD 84
Score = 43.5 bits (103), Expect = 6e-06
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 22/97 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
GG V + V W K + ++ +++ + L
Sbjct: 23 GGRVRFVVELADP-KLEVKWYK-NGQEIRP-------------STKYIFEHK--GCQRIL 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + Q TD Y G + K S E L VR P
Sbjct: 66 FINNCQMTDDSEYYVTA--G-DEKCSTE--LFVRSGP 97
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+ A P + W K Q + + Y H R++ I Q
Sbjct: 28 FVVEL-ADPKLEVKWYKNG--QEIRPSTKYIFEH--------KGCQRILFINNCQMTDDS 76
Query: 302 SYICRAANKLGTSEKTVE 319
Y A ++ ++E V
Sbjct: 77 EYYVTAGDEKCSTELFVR 94
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 3e-10
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+L V E C HP ++WR+ + +G G R L I +
Sbjct: 16 TNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR---LTISALE 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
K D TY C +
Sbjct: 72 KADSDTYTCDIGQAQSRAQ 90
Score = 41.2 bits (97), Expect = 5e-05
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 26/108 (24%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
E++ ++ GT C ++ V W K G + +
Sbjct: 13 EELTNLQVEEKGTAVFTCKTEHP-AATVTWRK--------------GLLELRASGKHQPS 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
+ T L + +++ D+ Y C + + + L V+
Sbjct: 58 QE--GLTLRLTISALEKADSDTYTCDI-----GQAQSRAQLLVQGRRS 98
Score = 37.3 bits (87), Expect = 0.001
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
C E +P + W K L + + S + +TI +
Sbjct: 28 FTCKTE-HPAATVTWRKGL--LELRASGKHQPSQ--------EGLTLRLTISALEKADSD 76
Query: 302 SYICRAANKLGTSEKTVE 319
+Y C ++ V+
Sbjct: 77 TYTCDIGQAQSRAQLLVQ 94
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 58.0 bits (139), Expect = 3e-10
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 25/182 (13%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +VEL C + D + W K + LP L+++D F+ D S Y
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQ-----ELPQKHDKHLVLQD--FSEVED--SGYYVC 62
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSL--------VVSEG 150
+ Y + +V + K A ++ D S +
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 151 QPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210
V L C G I W ++ + I P + + K+ RGTY C
Sbjct: 123 GSVLLTC---GLTDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKET 176
Query: 211 GK 212
Sbjct: 177 SN 178
Score = 40.6 bits (94), Expect = 3e-04
Identities = 29/187 (15%), Positives = 47/187 (25%), Gaps = 43/187 (22%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGTYYCVAEN 208
G V+L C + W + N LP + L + ++ ED G Y C
Sbjct: 14 GTSVELTCPL--DSDENLKWEK-NGQELPQKHDKH----LVLQDFSEVEDSGYYVCYTPA 66
Query: 209 G-----------VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY----- 252
VG + K Q + ++
Sbjct: 67 SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126
Query: 253 -----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
I W+K+ + N T T + K G+Y C+
Sbjct: 127 LTCGLTDKTIKWLKDGSIISPLNA--------------TKNTWNLGNNAKDPRGTYQCQG 172
Query: 308 ANKLGTS 314
A +
Sbjct: 173 AKETSNP 179
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 55.4 bits (134), Expect = 4e-10
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSI 183
++P RS+ V+ G P E ++ W+R + I + G+
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
+ L + ++ D+G+Y +A + K
Sbjct: 63 HT---LTVREVGPADQGSYAVIAGSSKVKFD 90
Score = 40.8 bits (96), Expect = 5e-05
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + + A V W + G S I +++ + + + +TL
Sbjct: 23 GSPAVFEAETERA-GVKVRWQR--------------GGSDISASNKYGLATE--GTRHTL 65
Query: 99 LVKDIQETDAGYYRCQV 115
V+++ D G Y
Sbjct: 66 TVREVGPADQGSYAVIA 82
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
E E + W + + ++ + Y ++ E T T+ V + GSY
Sbjct: 28 FEAETER-AGVKVRWQRGGSD--ISASNKYGLAT-----EGTRHTLTVREVGPADQGSYA 79
Query: 305 CRAANKLGTSEKTVE 319
A + + V
Sbjct: 80 VIAGSSKVKFDLKVI 94
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 55.0 bits (133), Expect = 4e-10
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+ V G+ E P W+ + + + G + L +
Sbjct: 13 YGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI---LILHNCQ 68
Query: 196 KEDRGTYYCVAENGVGKGT 214
G A N
Sbjct: 69 LGMTGEVSFQAANTKSAAN 87
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 25/99 (25%)
Query: 21 AQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGS 76
A + + + + G T + + D W
Sbjct: 2 AMALIEVE----KPLYGVEVFVGETAHFEIELSEP-DVHGQWKL--------------KG 42
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+ I D + L++ + Q G Q
Sbjct: 43 QPLAASPDCEIIED--GKKHILILHNCQLGMTGEVSFQA 79
Score = 37.3 bits (87), Expect = 8e-04
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
E + + P W + Q L + I D ++ + Q G
Sbjct: 25 FEIEL-SEPDVHGQWKLKG--QPLAASPDCEIIE--------DGKKHILILHNCQLGMTG 73
Query: 302 SYICRAANKLGTSEKTVE 319
+AAN + V+
Sbjct: 74 EVSFQAANTKSAANLKVK 91
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 55.8 bits (135), Expect = 4e-10
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 120 NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179
+ L VR P+ R+ +EG L C + W + + +
Sbjct: 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG 61
Query: 180 G-------GSIYRGSILKIPQITKEDRGTYYCVAEN 208
G+ L+I + ED G Y C+
Sbjct: 62 DRHSLRQDGARCE---LQIRGLVAEDAGEYLCMCGK 94
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 23/97 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L+C + + PV W K G + R ++R D + L
Sbjct: 34 GATAVLRCELS--KMAPVEWWK--------------GHETLRDGDRHSLRQD--GARCEL 75
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
++ + DAG Y C K L VR P
Sbjct: 76 QIRGLVAEDAGEYLCMC-----GKERTSAMLTVRAMP 107
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 57.5 bits (139), Expect = 4e-10
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 25/164 (15%)
Query: 55 PVIWMKVDRNKVTEPLP-ISTGSSLIIR--DSRFAIRY-------DTASSTYTLLVKDIQ 104
P + P + + +R Y L + ++
Sbjct: 9 PSLQ--------ALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIPAMK 60
Query: 105 ETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAG 160
+ AG YRC G S +++L P +S + VS G V L+C
Sbjct: 61 RSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS--AQPGPAVSSGGDVTLQC-QT 117
Query: 161 GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYC 204
+ + + +E + + + I +T GTY C
Sbjct: 118 RYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
Score = 41.3 bits (97), Expect = 1e-04
Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 24/180 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P + S +V +PV L C G + +++ L IP
Sbjct: 8 KPSLQALP--SSLVPLEKPVTLRC-QGPPGVDLYRLEKLSSSRYQDQAV------LFIPA 58
Query: 194 ITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLECHVE 250
+ + G Y C +NG + + FA +P + D+ L+C
Sbjct: 59 MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTR 118
Query: 251 AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310
Y KE N + + + F I +T G+Y C + +
Sbjct: 119 -YGFDQFALYKEGDPAPYKNPERWYRASF---------PIITVTAAHS--GTYRCYSFSS 166
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 55.4 bits (134), Expect = 4e-10
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+ L V EG L C P + W NN + P G++ L + +
Sbjct: 16 KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE---LVVRNLR 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
+D G Y C + T
Sbjct: 72 PQDSGRYSCSFGDQTTSAT 90
Score = 45.4 bits (108), Expect = 1e-06
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 26/107 (24%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
E +KD+ GG L+C + + PV W + ++ ++++R
Sbjct: 13 EALKDLEVLEGGAATLRCVLS-SVAAPVKWCYGNN--------------VLRPGDKYSLR 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + L+V++++ D+G Y C + L V P
Sbjct: 58 QE--GAMLELVVRNLRPQDSGRYSCSF-----GDQTTSATLTVTALP 97
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 55.6 bits (134), Expect = 5e-10
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
GG++ ++C Y + W + + + + + + T S R+ R +IR A+ +
Sbjct: 11 GGSLSVQC--PYEKEHRTLNKYWCRPPQIFLCDKI-VETKGSAGKRNGRVSIRDSPANLS 67
Query: 96 YTLLVKDIQETDAGYYRCQVIIG 118
+T+ ++++ E DAG Y C V
Sbjct: 68 FTVTLENLTEEDAGTYWCGVDTP 90
Score = 33.3 bits (76), Expect = 0.035
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRREN-----NAILPTGGSIY----RGSI---- 188
R++ G + ++C + H T W R + I+ T GS R SI
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSP 63
Query: 189 ------LKIPQITKEDRGTYYC-VAENGVGKGTRRNIAVEVEFAP 226
+ + +T+ED GTY+C V + + VEV P
Sbjct: 64 ANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 55.0 bits (132), Expect = 7e-10
Identities = 12/86 (13%), Positives = 19/86 (22%), Gaps = 16/86 (18%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTG-------------GSIYRG 186
+ V+ G + G P + W + L + S
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
L I G+Y C
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKF 97
Score = 48.1 bits (114), Expect = 2e-07
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 17/114 (14%)
Query: 25 PTISYIS--QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLI 79
P ++ Q+ +GG++ V A V W K L G L
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWV----DLSSKVGQHLQ 58
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQV 131
+ DS + + L + D Q G YRC+V + +L V
Sbjct: 59 LHDS---YDRASKVYLFELHITDAQPAFTGSYRCEV---STKDKFDCSNFNLTV 106
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 242 DMDLECHVEAYP---PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
+ V PP + W K L++ + + D + + + I
Sbjct: 21 SITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79
Query: 299 Q---YGSYICRAANKLGTSEKTVEL 320
Q GSY C + K L
Sbjct: 80 QPAFTGSYRCEVSTKDKFDCSNFNL 104
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 54.9 bits (132), Expect = 8e-10
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 28 SYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMK--VDRNKVTEPLPISTGSSLIIRD 82
Y + G L CS P+ W K ++ T L + ++ +
Sbjct: 3 GYKVEV-----GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQK 57
Query: 83 S-RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII-GINNKISAEVDLQVR 132
S R+ ++ D +L++K++ D G Y C++ G+ N E+ L ++
Sbjct: 58 SSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
Score = 38.0 bits (88), Expect = 7e-04
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPT--PRISWRRE-------NNAILPTG------------- 180
V G+ L C + + W + N +L T
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 181 --GSIYRGSI-LKIPQITKEDRGTYYCVAEN-GVGKGTRRNIAVEVE 223
G + +G + L I +T +D GTY C + G+ + + ++++
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 54.9 bits (132), Expect = 9e-10
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 39 GGTVELKCSVQYAQD-YPVIWMK--VDRNKVTEPLPISTGSSLIIRDS-RFAIRYDTASS 94
G V L C+ + W + + L + G + + S R+ ++ +
Sbjct: 12 GHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEG 71
Query: 95 TYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPV 136
+L +++ E+D+G Y C+V I G N LQV+ V
Sbjct: 72 DVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
Score = 38.7 bits (90), Expect = 5e-04
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRRE-------NNAILPTGGS---------- 182
S + G PV L C ++ W R N ++ T G
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 183 -----IYRGSI-LKIPQITKEDRGTYYCVAEN-GVGKGTRRNIAVEVEFAPV 227
I G + L I + D G Y C E G + +++V+ V
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 57.9 bits (139), Expect = 1e-09
Identities = 36/253 (14%), Positives = 72/253 (28%), Gaps = 28/253 (11%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIY-RG 186
L RR P + + L G V L C + W A G
Sbjct: 1 LAPRRCPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
L + + D G Y C + V E + K ++
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKS-------PLSNVV 112
Query: 247 CHVEAY-----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
C A++ +++ + Q + + +F+ + V + Y
Sbjct: 113 CEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQE-PCQYSQESQKFS-CQLAVPEGDSSFYI 170
Query: 302 SYICRAANKLGTSEKTVELFE--SIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTSWEPQ 359
+C A+ +G+ + F+ I+ PP + ++V +W+
Sbjct: 171 VSMC-VASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSV-------TWQDP 222
Query: 360 RK-QLNCSSLLYQ 371
+ L ++
Sbjct: 223 HSWNSSFYRLRFE 235
Score = 44.5 bits (104), Expect = 3e-05
Identities = 27/166 (16%), Positives = 43/166 (25%), Gaps = 38/166 (22%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+R P G +V L C +D + + +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---------- 51
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD 139
A LL++ +Q D+G Y C + + V L V PP
Sbjct: 52 --------PSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPP---- 95
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIY 184
+ QL CF + W + L T +
Sbjct: 96 -----------EEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 134 PPV--ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIY 184
PV +S SL + + V L C +W ++ + + G +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 185 RGSILKIPQITKEDRGTYYCVAEN 208
R L +P+ +D G + C E
Sbjct: 66 R---LILPEAKVQDSGEFECRTEG 86
Score = 46.2 bits (110), Expect = 9e-07
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 22/100 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
V L C + D+P W K D KV E ++ D + L
Sbjct: 25 SERVVLTCELSRV-DFPATWYK-DGQKVEE-------------SELLVVKMD--GRKHRL 67
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
++ + + D+G + C+ +SA + V+ P S
Sbjct: 68 ILPEAKVQDSGEFECRT-----EGVSAFFGVTVQDPSGPS 102
Score = 38.1 bits (89), Expect = 5e-04
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L C + + W K+ Q + ++ + D + + + + G
Sbjct: 30 LTCEL-SRVDFPATWYKDG--QKVEESELLVVKM--------DGRKHRLILPEAKVQDSG 78
Query: 302 SYICRAANKLGTSEKTVE 319
+ CR TV+
Sbjct: 79 EFECRTEGVSAFFGVTVQ 96
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 52.9 bits (127), Expect = 4e-09
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V LK Y I W+ K+ E + S+ I +S F R +
Sbjct: 18 GSNVTLKIHKDPLGPYRRITWLHTKNQKILE---YNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
L + ++++ D G Y +V+ N++ + L+V P
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETENELK--ITLEVFDP 109
Score = 34.4 bits (79), Expect = 0.012
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 136 VISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRR---------ENNAILPTGGSIYR 185
+ + S + G V L+ P RI+W N+ S ++
Sbjct: 4 IRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 186 GSI--------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227
G + L I + KED+GTYY I +EV F PV
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRVLR--ETENELKITLEV-FDPV 110
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 55.8 bits (134), Expect = 4e-09
Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 44/246 (17%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTP----RISWRREN------ 173
A++ +++ + + V + C P I+W ++
Sbjct: 1 ADLKVEMMAGG--------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE 52
Query: 174 ----------------NAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
AI+ + L++P I E+ G Y C K
Sbjct: 53 VKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGT- 111
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSI 276
+ +EV +P + ++G + + C YP + ++ TQ+ +
Sbjct: 112 VQLEVVASPASRLLLDQVGM-KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISED 170
Query: 277 SHFATADEFTDTT------IRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
+ D T +++ + ++ Y C + + +
Sbjct: 171 VITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230
Query: 331 QTQPSE 336
+T+ ++
Sbjct: 231 ETEKTD 236
Score = 52.0 bits (124), Expect = 8e-08
Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 30/204 (14%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPIS--TGSSLIIRDS 83
QI + V + C++ Y+Q + W E R
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ S +L + IQ +AG YRC+V++ K V L+V P
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT-PLKAQGTVQLEVVASPASR--LLL 126
Query: 144 SLVVSEGQPVQLECFA-GGHPTP-RISWRRENNAILPTGGSIYRG--------------- 186
V + + C + G +P I+W + P I
Sbjct: 127 DQVGMKENEDKYMCESSGFYPEAINITWEK-QTQKFPHPIEISEDVITGPTIKNMDGTFN 185
Query: 187 --SILKIPQITKEDRGTYYCVAEN 208
S LK+ ++ Y CV +
Sbjct: 186 VTSCLKLNSSQEDPGTVYQCVVRH 209
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.4 bits (126), Expect = 6e-09
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
++ SEG L+C + W++ + G G+ L+I ++
Sbjct: 16 KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE---LQIHDLS 70
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG 236
D G Y C+ T + V A P G
Sbjct: 71 VADAGEYSCMCGQERTSAT---LTVRALPARFTEGSGPSSG 108
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L+C + ++ PV W K G + R++++ D + L
Sbjct: 23 GATATLQCEL--SKVAPVEWKK--------------GPETLRDGGRYSLKQD--GTRCEL 64
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
+ D+ DAG Y C + L VR P
Sbjct: 65 QIHDLSVADAGEYSCMC-----GQERTSATLTVRALPA 97
Score = 36.2 bits (84), Expect = 0.003
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L+C + + W K + L + YS+ D T + I G
Sbjct: 28 LQCELS--KVAPVEWKKGP--ETLRDGGRYSLKQ--------DGTRCELQIHDLSVADAG 75
Query: 302 SYICRAANKLGTSEKTVE 319
Y C + ++ TV
Sbjct: 76 EYSCMCGQERTSATLTVR 93
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.4 bits (136), Expect = 7e-09
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKED 198
V EGQ C P ++W +++ + + + R L I ++ +D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549
Query: 199 RGTYYCVAENGVGK 212
+G Y A+N G
Sbjct: 550 KGEYTVRAKNSYGT 563
Score = 52.1 bits (125), Expect = 1e-07
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C V A PP + W K+D + L + Y + TI + + + G Y
Sbjct: 502 FYCRVIASSPPVVTWHKDDRE--LKQSVKYMKRY---NGNDYGLTINRVKGDDK--GEYT 554
Query: 305 CRAANKLGTSEKTVELF 321
RA N GT E+ V L
Sbjct: 555 VRAKNSYGTKEEIVFLN 571
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + C V + V W K DR + + ++ RY+ + Y L
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRE--------------LKQSVKYMKRYN--GNDYGL 540
Query: 99 LVKDIQETDAGYYRCQVI 116
+ ++ D G Y +
Sbjct: 541 TINRVKGDDKGEYTVRAK 558
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 52.6 bits (126), Expect = 7e-09
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 39 GGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93
G +V + C Y + W + L S G R + +
Sbjct: 15 GNSVSITC--YYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN 72
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
T+ + + + + D+G Y+C + I + +S +V L+V
Sbjct: 73 GTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
Score = 31.8 bits (72), Expect = 0.12
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 143 RSLVVSEGQPVQLECF---AGGHPTPRISWRREN-----NAILPTGGSIY-----RGSI- 188
+ EG V + C+ + R W R+ ++ + G + R ++
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 189 ---------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ I Q++++D G Y C +G ++++EV
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 54.0 bits (130), Expect = 8e-09
Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 26/186 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I + V + C +Y + ++ +
Sbjct: 5 PFIWAEPHFMVPK-EKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPER------ 53
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVR---RPPVISDN 140
+ + D+ AG Y C +G ++ S +DL V P +S
Sbjct: 54 --------INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLS-- 103
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
V G+ V C + +E + G + + +T RG
Sbjct: 104 VHPGPEVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 162
Query: 201 TYYCVA 206
TY C
Sbjct: 163 TYRCFG 168
Score = 44.4 bits (105), Expect = 1e-05
Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 21/183 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
P I +V + + V + C G + E +
Sbjct: 4 KPFIWAEP--HFMVPKEKQVTICC-QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
IP + G Y C+ G N + V + P + C
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
++ + +KE + Q A EF + +T R G+Y C
Sbjct: 121 RLD-TATSMFLLLKEGRSSHV---QRGYGKVQA---EF---PLGPVTTAHR--GTYRCFG 168
Query: 308 ANK 310
+
Sbjct: 169 SYN 171
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 52.3 bits (125), Expect = 8e-09
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 30 ISQEQIK-DIGGTVELKC--SVQYAQDYPVIWMK--VDRNKVTEPLPISTGSSLIIRDS- 83
+S++ I +G V L C + W K +K L + G+ +I R S
Sbjct: 1 MSEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKST 60
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPV 136
++ + +L + + D+G Y C++ + G N + V L++RR V
Sbjct: 61 KYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
Score = 37.6 bits (87), Expect = 0.001
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 26/113 (23%)
Query: 141 STRSLVVSEGQPVQLECF--AGGHPTPRISWRRE-------NNAILPTGGS--------- 182
S +++ GQPV L C + + W + N +L T G+
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 183 ------IYRGSI-LKIPQITKEDRGTYYCVAEN-GVGKGTRRNIAVEVEFAPV 227
+ G + L I + D G Y C E G ++N+ +E+ A V
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 55.6 bits (133), Expect = 2e-08
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 17/149 (11%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
+ Y ++ + I GY + + + +++ V+
Sbjct: 129 TFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP----------CTRTPHFLRIQNVEVNA 178
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-------GSILKIPQITKEDRGTY 202
GQ +C A G + + + + + TK D G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVP 231
C+ G G + V+ PV P
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAP 267
Score = 54.4 bits (130), Expect = 3e-08
Identities = 24/188 (12%), Positives = 43/188 (22%), Gaps = 14/188 (7%)
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
S + + P W + + + L I + V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDP-----TRTWNRAELAISTFWPNFYQVIFEVIT 143
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ----YDMDLECHVEAYPPPAIVWIKED 263
+G +G V+V P P Q ++ +C +
Sbjct: 144 SG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
Query: 264 TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323
+ + T+ + V+ KR G Y C + G
Sbjct: 203 IDVRDAPLKEIKV----TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 324 IIPVCPPQ 331
P P
Sbjct: 259 KEPPVPIA 266
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 53.3 bits (128), Expect = 2e-08
Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 32/179 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V L+C ++ R K T P L
Sbjct: 19 GSPVTLRCQG----GQETQEYRLYREKKTAPWITRIPQEL--------------VKKGQF 60
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPV 153
+ I G YRC + S ++L V P +S S VV+ G V
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSA--QPSPVVNSGGNV 118
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGS------ILKIPQITKEDRGTYYCVA 206
L+C +E P + + I + ++ R Y C A
Sbjct: 119 TLQC-DSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176
Score = 46.0 bits (109), Expect = 5e-06
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
P + V+++G PV L C GG T RE
Sbjct: 5 KPTLWAEP--GSVITQGSPVTLRC-QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFP 61
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-----FAPVITV---PKPRLGQALQYD 242
IP IT E G Y C + + + +E+ P ++ P G +
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVT-- 119
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
L+C + KE + + ++ F ++ ++ +R
Sbjct: 120 --LQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIF---SVGPVSPSRR--WW 171
Query: 303 YICRAANK 310
Y C A +
Sbjct: 172 YRCYAYDS 179
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 52.9 bits (127), Expect = 2e-08
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVR---RPPVISDNSTRSLVVS 148
+ + + E AG YRC + + S ++L + P +S + S +V+
Sbjct: 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS--ALPSPLVT 112
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS-----ILKIPQITKEDRGTYY 203
G+ V L C P +E A G+ + +T GTY
Sbjct: 113 SGKSVTLLC-QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
Query: 204 C 204
C
Sbjct: 172 C 172
Score = 45.6 bits (108), Expect = 7e-06
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SIL 189
P + V+S G V + C G +E + + +
Sbjct: 4 PKPTLWAEP--GSVISWGNSVTIWC-QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLE 246
IP +T++ G Y C + VG + + + ++ P + L
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLL 120
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C P + KE L + + A+ F + +T G+Y C
Sbjct: 121 CQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE-F---PMSPVTSVHG--GTYRCF 173
Query: 307 AANK 310
+++
Sbjct: 174 SSHG 177
Score = 27.5 bits (61), Expect = 6.6
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 16/75 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +V L C + D + K P+ S +
Sbjct: 114 GKSVTLLCQSRSPMD-TFLLCKER-----AAHPLLCLRS----------EHGAQQHQAEF 157
Query: 99 LVKDIQETDAGYYRC 113
+ + G YRC
Sbjct: 158 PMSPVTSVHGGTYRC 172
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 50.7 bits (121), Expect = 2e-08
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMK--VDRNKVTEPLPISTGSSLIIR-DSRFAIRYDTAS 93
G V L C S P+ W + L + G ++ + +SR+ ++ + +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 94 STYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPP 135
+L +++ D G Y C V I G + + ++++ P
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
Score = 39.2 bits (91), Expect = 3e-04
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 141 STRSLVVSEGQPVQLECF--AGGHPTPRISWRRE-------NNAILPTGGS--------- 182
S ++ G PV L C + W +++ T G
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62
Query: 183 ------IYRGSI-LKIPQITKEDRGTYYC-VAENGVGKGTRRNIAVEVEFAP 226
I G++ L I D G Y C V G + V+ E P
Sbjct: 63 YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 53.4 bits (128), Expect = 3e-08
Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 31/239 (12%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I + V + C +Y + ++ +
Sbjct: 8 PFIWAEPHFMVPK-EKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPER------ 56
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDN 140
+ + D+ AG Y C +G ++ S +DL V P +S +
Sbjct: 57 --------INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH 108
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
V G+ V C T +E + G + + +T RG
Sbjct: 109 --PGPEVISGEKVTFYC-RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 165
Query: 201 TYYCVAENGVGKGTRR----NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255
TY C + + V + P+ A E
Sbjct: 166 TYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADT-WGTYLLTTETGLQK 223
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 50.7 bits (121), Expect = 3e-08
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 38 IGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
GG++ L+C + V W + D+ L I F R
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQL-----LAICNADLGWHISPSFKDRV-APGPG 70
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
L ++ + D G Y C + + + L+V V +
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
Score = 36.0 bits (83), Expect = 0.004
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAIL---PTGG-----------SIY 184
+T ++ +G + L+C +++W +++ + G +
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68
Query: 185 RGSILKIPQITKEDRGTYYC-VAENGVGKGTRRNIAVEVEFAPVI 228
G L + +T D G Y+C G T R I +EV + V
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGR-IFLEVLESSVA 112
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 50.5 bits (121), Expect = 3e-08
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G++ ++C +Y DY W + + + L + S +++ +R +IR +
Sbjct: 16 QGSLTVQC--RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFI 73
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+T+ ++D++ +DAG Y C + G +V + +
Sbjct: 74 FTVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNI 108
Score = 32.8 bits (75), Expect = 0.051
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISW-----RRENNAILPTGGSIY-----RGSI--- 188
+ E + ++C + G + W +R ++ T S R SI
Sbjct: 9 EEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDN 68
Query: 189 -------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
+ + + D G Y+C G G + V + P
Sbjct: 69 QRDFIFTVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNIGPVP 112
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 54.2 bits (130), Expect = 3e-08
Identities = 31/213 (14%), Positives = 54/213 (25%), Gaps = 45/213 (21%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+ C ++ +D V + + I ++ I TASS
Sbjct: 17 LHSNFTAVCVLKEKC--------MDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS--- 65
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
+ DI + + G + + + PP +P L C
Sbjct: 66 VTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EKPKNLSC 111
Query: 158 FAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRG---------------- 200
R W L T ++ + K +
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
+ AEN +GK T +I + P P
Sbjct: 172 EVWVEAENALGKVTSDHINFDPV---YKVKPNP 201
Score = 43.8 bits (103), Expect = 7e-05
Identities = 27/202 (13%), Positives = 39/202 (19%), Gaps = 28/202 (13%)
Query: 143 RSLVVSEGQPVQLEC-------FAGGHPTPRISWRRENNAILPTGGSI--YRGSILKIPQ 193
S VV C I W+ + I +I S +
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTD 70
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYP 253
I C V P+ +L C V
Sbjct: 71 IAS-LNIQLTCNILTFGQLEQ----NVYGITIISGLPPEK--------PKNLSCIVNEGK 117
Query: 254 PPAIVWIK-EDTQQVLTNNQHYSISHFATADEFT-----DTTIRVITIEKRQYGSYICRA 307
W +T + AD + + A
Sbjct: 118 KMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177
Query: 308 ANKLGTSEKTVELFESIIPVCP 329
N LG F+ + V P
Sbjct: 178 ENALGKVTSDHINFDPVYKVKP 199
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 52.0 bits (125), Expect = 9e-08
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 53/228 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL-PISTGSSLIIRDSRFAIRYDTASSTYT 97
G +++L+C Y+ + W + + L +G ++ + F + + S++
Sbjct: 18 GASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFH 77
Query: 98 LLVKDIQETDAGYYRCQVIIGINN-------------KISAEVDLQVRRPPVISDNST-- 142
L + +D+ Y C V S
Sbjct: 78 LRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE 137
Query: 143 -------RSLVVSEGQPVQLECFA-GGHPTPRISWRR------------------ENNAI 176
R+ V G+ V L C H + W R
Sbjct: 138 AAVTQSPRNKVTVTGENVTLSCRQTNSHNY--MYWYRQDTGHELRLIYYSYGAGNLQIGD 195
Query: 177 LPTGGSIYRGSI----LKIPQITKEDRGTYYCVAENGV-----GKGTR 215
+P G R + L + + Y+C + + G+G++
Sbjct: 196 VPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK 243
Score = 33.5 bits (77), Expect = 0.084
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 28/101 (27%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE-------------NNAILPTGGSIYRGSI- 188
+ VSEG +QL C TP + W + + + G + +
Sbjct: 11 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS 70
Query: 189 -------LKIPQITKEDRGTYYCVAENGV-------GKGTR 215
L+ + + D Y+C GKG +
Sbjct: 71 KSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAK 111
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 49.6 bits (118), Expect = 9e-08
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DTA 92
G V+++C + Y V W+ + + + + I+ +++ R
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVR-HGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKV 74
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRR 133
+L + +Q D +Y C+V + ++L+VR+
Sbjct: 75 PGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
Score = 30.3 bits (68), Expect = 0.37
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 27/110 (24%)
Query: 141 STRSLVVSEGQPVQLECF---AGGHPTPRISWRRENNA------ILPTGGSI-----YRG 186
+ S+ + V+++C G+ + W + + + + G YRG
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 187 SI-----------LKIPQITKEDRGTYYCVAENGVGKGT--RRNIAVEVE 223
+ L+I + +DR Y C G R+ +E+
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 51.0 bits (122), Expect = 1e-07
Identities = 32/178 (17%), Positives = 54/178 (30%), Gaps = 31/178 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +V ++C ++ + EP +
Sbjct: 19 GNSVTIRCQG----TLEAQEYRLVKEGSPEPWDTQNPLE--------------PKNKARF 60
Query: 99 LVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQ 154
+ + E AG YRC ++ S ++L V P +S + S VV+ G+ V
Sbjct: 61 SIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS--ALPSPVVTSGENVT 118
Query: 155 LECFAGGHPTPRISWRRENNAILP-TGGSIYRGS-----ILKIPQITKEDRGTYYCVA 206
L+C R E + L T S S + + +T R C
Sbjct: 119 LQC-GSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 43.3 bits (102), Expect = 4e-05
Identities = 23/183 (12%), Positives = 46/183 (25%), Gaps = 15/183 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
+ V+S G V + C G +E + +
Sbjct: 5 KATLWAEP--GSVISRGNSVTIRC-QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFS 61
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
IP +T+ G Y C + G + + V + P ++ L+C
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQC 121
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ +E ++ F + +T R C
Sbjct: 122 GSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALF---PVGPVTPSHR--WMLRCYG 175
Query: 308 ANK 310
+ +
Sbjct: 176 SRR 178
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 50.7 bits (121), Expect = 1e-07
Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 13/131 (9%)
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI----SAEVDLQVR---RPPV 136
R + S + + + AG YRC + + S +D+ + P
Sbjct: 51 RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPS 110
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI---LPTGGSIYRGSILKIPQ 193
+S + V G+ V L C + RE A LP G + P
Sbjct: 111 LS--AQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPL 167
Query: 194 ITKEDRGTYYC 204
GTY C
Sbjct: 168 GPATHGGTYRC 178
Score = 34.5 bits (79), Expect = 0.033
Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 15/162 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--TGGSIYRGS--- 187
R P + + +V + V L+C+ RE G + G
Sbjct: 7 RKPSLLAHP--GPLVKSEETVILQCW-SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRR------NIAVEVEFAPVITVPKPRLGQALQY 241
I ++T++ GTY C +I + + +P
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
++ L C +E ++ AD
Sbjct: 124 NVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQAD 164
Score = 26.8 bits (59), Expect = 9.8
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I + P++S + G V L CS + + D + G
Sbjct: 100 IVIIGLYEKPSLSAQPGPTVL-AGENVTLSCSSRSSYD-MYHLSRE-------------G 144
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114
+ R T + + L T G YRC
Sbjct: 145 EAHERRLPAGPKVNGTFQADFPL----GPATHGGTYRCF 179
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 51.5 bits (123), Expect = 1e-07
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 13/129 (10%)
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI----SAEVDLQVRR---PPVISDN 140
+ S + + + AG YRC + + S +D+ + P +S
Sbjct: 54 EHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLS-- 111
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI---LPTGGSIYRGSILKIPQITKE 197
+ V G+ V L C + RE A G + P
Sbjct: 112 AQPGPTVLAGESVTLSC-SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT 170
Query: 198 DRGTYYCVA 206
GTY C
Sbjct: 171 HGGTYRCFG 179
Score = 37.7 bits (87), Expect = 0.003
Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 30/221 (13%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--TGGSIYRGS--- 187
R P + + +V + V L+C+ RE G + G
Sbjct: 6 RKPSLLAHP--GPLVKSEETVILQCW-SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKA 62
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRR------NIAVEVEFAPVITVPKPRLGQALQY 241
I + ++ GTY C +I + + +P
Sbjct: 63 NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGE 122
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ L C +E + ++ AD F G
Sbjct: 123 SVTLSCSSR-SSYDMYHLSREGEAHERRFSAGPKVNGTFQAD-FPLGPA-------THGG 173
Query: 302 SYICRAANK---LGTSEK--TVELF--ESIIPVCPPQTQPS 335
+Y C + + S + + + P T+PS
Sbjct: 174 TYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPS 214
Score = 36.1 bits (83), Expect = 0.014
Identities = 32/171 (18%), Positives = 48/171 (28%), Gaps = 26/171 (15%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I +T P++S + G +V L CS + + D + G
Sbjct: 99 IVITGLYEKPSLSAQPGPTVLA-GESVTLSCSSRSSYD-MYHLSRE-------------G 143
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQV 131
+ R S T + + L T G YRC + S + + V
Sbjct: 144 EAHERRFSAGPKVNGTFQADFPL----GPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSV 199
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182
P S S G P L A + +P G S
Sbjct: 200 TGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDL---VPRGSS 247
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 39 GGTVELKCSVQYAQDYP------VIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIRY 89
G + + C Y D P IW K + I +G ++ R +
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGK--RQVVIHSGDPKLVDKRFRGRAELMG 72
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNK 122
+ LL+KD++ D+G Y + I +N+
Sbjct: 73 NMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105
Score = 29.8 bits (67), Expect = 0.50
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 27/97 (27%)
Query: 140 NSTRSLVVSEGQPVQLEC----FAGGHPTP--RISWRRENNAILPTG------------- 180
+S +++ G + + C A + W + +
Sbjct: 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 181 -------GSIYRGSI-LKIPQITKEDRGTYYCVAENG 209
G++ L + + ED GTY E
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 49.8 bits (118), Expect = 2e-07
Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 14/174 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
+ L V +++ C + N IL +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDTVL 65
Query: 203 YCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA---IV 258
C G + N++V VI +P L A+ +EC V P +
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTL-VAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+ + + L + A A + T + + ++ C A L
Sbjct: 125 LFRGN--ETLHYE---TFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173
Score = 43.2 bits (101), Expect = 4e-05
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 34/189 (17%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
++ + G++E+ CS Q V ++ NK+ + +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQP-EVGGLETSLNKI----LLDEQAQWKHY---------- 54
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
LV +I + +C + S ++ V +PP + + +V+ G+
Sbjct: 55 -------LVSNI--SHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGK 104
Query: 152 PVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRG------SILKIPQITKEDRGTY 202
+EC P + R N + + ++ +
Sbjct: 105 SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF 164
Query: 203 YCVAENGVG 211
C+A +
Sbjct: 165 SCLAVLDLM 173
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 47.9 bits (114), Expect = 2e-07
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 38 IGGTVELKCSVQYAQDYP-----VIWMKVDRNKVTEPLPISTG-SSLIIRDSRFAIRYDT 91
T +L C +Q+ V W + + + G S++ R
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVL---NEVYLGKEKFDSVHSKYMGRTSF 64
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVI----IGINNKISAEVDLQVR 132
S ++TL + ++Q D G Y+C + G+ +L V
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 38 IGGTVELKCSV---QYAQDYPVIWMKVDRNKVT------EPLPISTGSSLIIRDSRFAIR 88
+G EL C + + A V W + ++V + R +
Sbjct: 20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL--K 77
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
L +++++ +D G Y C + A V+L+V P +
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINPGRSR 132
Score = 33.4 bits (76), Expect = 0.039
Identities = 21/135 (15%), Positives = 35/135 (25%), Gaps = 36/135 (26%)
Query: 123 ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF---AGGHPTPRISWRRENNA---I 176
+ +V P + G +L C + W R +
Sbjct: 1 MRGSGQFRVIGP-------GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53
Query: 177 LPTGGSI--------YRGSI-------------LKIPQITKEDRGTYYCVAENGVGKGTR 215
L G YRG L+I + D G Y C + +
Sbjct: 54 LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE- 112
Query: 216 RNIAVEVEFAPVITV 230
+ ++VE P +
Sbjct: 113 AAVELKVE-DPFYWI 126
Score = 29.1 bits (65), Expect = 1.1
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 227 VITVPKP---RLGQALQYDMDLECHVEAYPPP---AIVWIKEDTQQVLTNNQHYSISHFA 280
VI P +G + +L C + + W + +V+ ++
Sbjct: 9 VIGPGHPIRALVGD----EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAE 64
Query: 281 TADEFTDTTIRV----------ITIEKRQ---YGSYICRAANKLGTSEKTVEL--FESII 325
A E+ T + + I+ + G Y C + E VEL +
Sbjct: 65 QAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY 124
Query: 326 PVCPPQTQP 334
+ P +++
Sbjct: 125 WINPGRSRS 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 101/281 (35%)
Query: 71 PISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVD 128
P ++ I+ DS + + + L + ++ + QV + N
Sbjct: 315 PNTSLPPSILEDS---LENNEGVPSPMLSISNLT-------QEQVQDYVNKTNS-----H 359
Query: 129 LQVRRPPVIS-DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS 187
L + IS N ++LVVS G P L R+ A P+G R
Sbjct: 360 LPAGKQVEISLVNGAKNLVVS-GPPQSLYGLN--------LTLRKAKA--PSGLDQSR-- 406
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP--KPRLGQALQY-DMD 244
IP + R + F P + P L A + D
Sbjct: 407 ---IP--------------------FSERKLKFSNRFLP-VASPFHSHLLVPASDLINKD 442
Query: 245 LECHVEAYPPPAI---VWIKED---------------TQQVLT------NNQHYSISH-- 278
L + ++ I V+ D ++ + +H
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 279 -FA----------TADEFTDTTIRVI---TIEKR---QYGS 302
F T T +RVI T++ YG
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 35.8 bits (82), Expect = 0.030
Identities = 56/326 (17%), Positives = 99/326 (30%), Gaps = 129/326 (39%)
Query: 31 SQEQIKDIG-GTVELKCSVQYAQDYPVIWMKVDRN----------KVTEPLPIS-----T 74
SQEQ G G ++L + + AQD +W + D + + P++
Sbjct: 1626 SQEQ----GMG-MDLYKTSKAAQD---VWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 75 G-SSLIIRDSRFAIRYDT---ASSTYTLLVKDIQETDAGY-YRCQVIIGINNKISAEVDL 129
G IR++ A+ ++T + K+I E Y +R + + L
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-----------KGLL 1726
Query: 130 ------QVRRPPVISDNSTRSLVVS---------EGQPVQLECFAG---GHPTPRISWRR 171
Q P + ++ +G FAG G
Sbjct: 1727 SATQFTQ----PAL-------TLMEKAAFEDLKSKGLIPADATFAGHSLG---------- 1765
Query: 172 ENNAILPTGGSIYRGSILKIPQITKED-------RGTY--YCVAENGVGKGTRRNIAVEV 222
E A+ + SI E RG V + +G+ IA+
Sbjct: 1766 EYAALASLADVM---SI--------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-- 1812
Query: 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT--N----NQHYSI 276
P R+ + + L+ VE + + T ++ N NQ Y
Sbjct: 1813 -------NPG-RVAASFSQE-ALQYVVER--------VGKRTGWLVEIVNYNVENQQYVA 1855
Query: 277 S-HFATADEFTDTT----IRVITIEK 297
+ D T+ ++ I I +
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIE 1881
Score = 35.0 bits (80), Expect = 0.050
Identities = 57/422 (13%), Positives = 120/422 (28%), Gaps = 140/422 (33%)
Query: 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL-----P 71
+L PT S+ Q+++ Q+ + P + TE P
Sbjct: 15 SLEHVLLVPTASFFIASQLQE-----------QFNKILP---------EPTEGFAADDEP 54
Query: 72 ISTGSSLIIRDSRFAIRY---DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SA 125
+ + L+ + + +L + E + Y N I +A
Sbjct: 55 TTP-AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-------GNDIHALAA 106
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS----WR--RENNAILPT 179
++ + V + ++ + + P + S +R E NA L
Sbjct: 107 KLLQENDTTLVKTKELIKNYITA--------RIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 180 --GG---------------SIYRGSI----------LKIPQITKEDRGTYYCVAENGVGK 212
GG Y + L T D + +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-------TQ 211
Query: 213 G-------TRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262
G + + ++ P+ + P + Q Y + + + P + +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVT--AKLLGFTPGEL---RS 265
Query: 263 DTQQVLTNNQH----YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ ++Q +I+ + + F + + IT+
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV----------------------- 302
Query: 319 ELFESIIPVCPPQTQPSELLPLRNVNMAVIFAE-QPTSWEPQRKQLNCSSLLYQCVLPLV 377
LF I V + P+ LP + ++ E P+ P L+ S+L + V V
Sbjct: 303 -LF--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS---P---MLSISNLTQEQVQDYV 353
Query: 378 DR 379
++
Sbjct: 354 NK 355
Score = 31.6 bits (71), Expect = 0.63
Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 59/194 (30%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK------IPQI 194
STR L +S G LE ++PT S + S L+ +P+
Sbjct: 5 STRPLTLSHG---SLEH----------VL------LVPT-ASFFIASQLQEQFNKILPEP 44
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL--ECHVEAY 252
T A + E + +G+ L Y L V +
Sbjct: 45 T--------------------EGFAADDEPTTPAEL----VGKFLGYVSSLVEPSKVGQF 80
Query: 253 PPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSY-ICRAANK 310
+ + E L N H + ++ T + + I + Y A +
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-I--KNY--ITARIMAKR 135
Query: 311 LGTSEKTVELFESI 324
+ LF ++
Sbjct: 136 PFDKKSNSALFRAV 149
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 47.1 bits (112), Expect = 6e-07
Identities = 13/98 (13%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPL---PISTGSSLIIRDSRFAIRYDTAS 93
G T+++KC +++ W + ++ + L + +S ++ R +
Sbjct: 19 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 78
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ + ++Q D+G Y+C + +++
Sbjct: 79 GLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 116
Score = 29.4 bits (66), Expect = 0.78
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 32/109 (29%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRREN---------- 173
E+ + + EGQ + ++C + + +W+
Sbjct: 2 ELRAATKLTE-------EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLAC 54
Query: 174 -NAILPTGGSIYRG--SI----------LKIPQITKEDRGTYYCVAENG 209
+ G + +++ + ED G Y CV
Sbjct: 55 TERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP 103
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 46.7 bits (111), Expect = 7e-07
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 24/135 (17%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
A + Y +E G T+++KC +++ W + ++ + L + S
Sbjct: 1 ATKLTEEKYELKE-----GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 55
Query: 79 IIRDS---RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R + + + ++Q D+G Y+C + ++
Sbjct: 56 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIR----- 110
Query: 136 VISDNSTRSLVVSEG 150
LVV++G
Sbjct: 111 ---------LVVTKG 116
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 46.1 bits (109), Expect = 1e-06
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 38 IGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
+G +V ++Q + + W P T + + + R Y
Sbjct: 13 LGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNY 72
Query: 97 TLLVKDIQETDAGYYRCQVII-GINNKISAEVDLQV 131
L++ D++ DAG Y+ + + +LQ+
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 29.9 bits (67), Expect = 0.44
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 21/89 (23%)
Query: 137 ISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENN--AILPTGGSI---------- 183
+ D+ ++ G+ V I+W + + + P
Sbjct: 1 MKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRN 60
Query: 184 YRGSI--------LKIPQITKEDRGTYYC 204
Y I L I + ED G Y
Sbjct: 61 YYERIHALGPNYNLVISDLRMEDAGDYKA 89
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 47.5 bits (113), Expect = 2e-06
Identities = 40/242 (16%), Positives = 72/242 (29%), Gaps = 66/242 (27%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL-PISTGSSLIIRDS----RFAIRYDTAS 93
G + E+ C + + W K + L + +S ++ +S Y +
Sbjct: 17 GSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTR 76
Query: 94 STYTLLVKDIQETDAGYYRCQ------------------VIIGINNKISAEVDLQVRRPP 135
++++++ E D+G Y C V + A+ D +
Sbjct: 77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGA 136
Query: 136 VISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGS----IYRGSI-- 188
+ S+ + + V L C + + I W + I +GS
Sbjct: 137 QKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR-----LPSKEMIFLIRQGSDEQ 191
Query: 189 -------------------LKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVE 221
L I + ED Y+C + GKGTR V
Sbjct: 192 NAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTR----VT 247
Query: 222 VE 223
VE
Sbjct: 248 VE 249
Score = 31.3 bits (71), Expect = 0.46
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 25/89 (28%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--------AILPTGGSIYRGSI---- 188
T+S++ G ++ C T I W S+ S
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPG 67
Query: 189 -------------LKIPQITKEDRGTYYC 204
+ + + + D G YYC
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYC 96
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 44.4 bits (105), Expect = 5e-06
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 39 GGTVELKCSVQ-----YAQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYDT 91
G +V L C +Q + W + + + G S R A R
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+L + ++ D G Y C + S ++ L+V P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 33.3 bits (76), Expect = 0.037
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 35/104 (33%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-----RISWRRENNA-----IL 177
D+ V+ P + G V L C+ +++W R +
Sbjct: 1 DVVVQAPTQVP--------GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH 52
Query: 178 PTGGSIYRGSI-----------------LKIPQITKEDRGTYYC 204
T G Y S L++ + ED G Y C
Sbjct: 53 QTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.6 bits (102), Expect = 8e-06
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G + V + + W K + L +G+ ++S +++AS+
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLE----LGSKSGARFSFKES-----HNSASNV 77
Query: 96 YT--LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
YT L + + D GYYR +V + S ++ V P
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEV-KAKDTCDSCGFNIDVEAP 117
Score = 37.1 bits (85), Expect = 0.002
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 16/86 (18%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPT-------------GGSIYRG 186
S+ V G+ + G P I W + L + S
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
L I ++ DRG Y +
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTC 105
Score = 32.9 bits (74), Expect = 0.051
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 242 DMDLECHVEAYP---PPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEK 297
D + V P I W K ++ + + +S + + ++ + I K
Sbjct: 29 DAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKE--SHNSASNVYTVELHIGK 86
Query: 298 RQY---GSYICRAANKLGTSEKTVEL 320
G Y K +
Sbjct: 87 VVLGDRGYYRLEVKAKDTCDSCGFNI 112
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 43.8 bits (103), Expect = 9e-06
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 35/114 (30%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC----FAGGHPTPRISWRRENNA---ILPTGG 181
L V +PP + EG L C G ++W R+ + G
Sbjct: 9 LWVSQPP--------EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGT 60
Query: 182 SIYRGSI---------------LKIPQITKEDRGTYYCVAEN-----GVGKGTR 215
+RG + L I + D Y C E G G GTR
Sbjct: 61 PEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTR 114
Score = 41.9 bits (98), Expect = 3e-05
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 39 GGTVELKCSVQYAQ-DYPVIWMKVDRNKVTE-PLPISTGSSLIIRDSRFAIRYDTASSTY 96
G + L CS +Q + + R++V + R + A
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 97 TLLVKDIQETDAGYYRCQVIIG 118
L ++D++ DA Y C+V +
Sbjct: 82 ELHIRDVRGHDASIYVCRVEVL 103
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 44.2 bits (104), Expect = 1e-05
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 14/143 (9%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP----LPISTGSSLIIRDSRFAIRYDTAS 93
+G V+L C V + W+ + + + +++ + I D + ++
Sbjct: 23 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 82
Query: 94 -----STYTLLVKDIQETDAGYYRCQV----IIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ Y L + + + GYY C V ++ ++ + + + +
Sbjct: 83 MRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPV 142
Query: 145 LVVSEGQPVQLE-CFAGGHPTPR 166
QP + E C G
Sbjct: 143 HPTGTSQPQRPEDCRPRGSVKGT 165
Score = 37.3 bits (86), Expect = 0.003
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 29/124 (23%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISW--RRENNAILPTGGSIYRGS----------- 187
+ + GQ V L C G + SW + ++ + +Y S
Sbjct: 15 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 74
Query: 188 ----------------ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
+L + + +KE+ G Y+C + + V + T P
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKP 134
Query: 232 KPRL 235
R
Sbjct: 135 VLRT 138
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 42.8 bits (101), Expect = 2e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSL-IIRDSRFAIRYDTASSTY 96
G CS+ +++D + W ++ + TE + ++D+RF I +
Sbjct: 14 GANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDF 73
Query: 97 TLLVKDIQETDAGYYRCQVI 116
+ + D + D+G Y C I
Sbjct: 74 HMNILDTRRNDSGIYLCGAI 93
Score = 26.6 bits (59), Expect = 7.0
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 22/83 (26%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGSI-------------- 188
L VSEG C + ++W R + + + + +
Sbjct: 8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL 67
Query: 189 -------LKIPQITKEDRGTYYC 204
+ I + D G Y C
Sbjct: 68 PNRHDFHMNILDTRRNDSGIYLC 90
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 42.6 bits (100), Expect = 2e-05
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 39 GGTVELKCSVQYAQDYP-------VIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIR 88
G V ++CS Y D W + + + + + +++ RF +
Sbjct: 21 GMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL 80
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIG 118
D + TL ++D + +DAG Y ++ G
Sbjct: 81 GDPQTKNCTLSIRDARMSDAGRYFFRMEKG 110
Score = 29.1 bits (65), Expect = 1.0
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L I D G Y+ E G K + + V
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSV 123
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 43.6 bits (102), Expect = 3e-05
Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 24/177 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGT 201
+++ G V + C + LP + G+ K+ +++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIE----TPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 202 YYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA--- 256
C + + + V + P V P P Q + + L C VE P A
Sbjct: 63 PMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLT 120
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG-SYICRAANKLG 312
+V ++ + + L A + + + +G + CR L
Sbjct: 121 VVLLRGE--KELKR---------EPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166
Score = 42.4 bits (99), Expect = 7e-05
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
++ + ++QE C + + +A+ L V P + +
Sbjct: 44 LPGNNRKVYELSNVQED--SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 150 GQPVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY-CV 205
G+ + L C GG P + + R + + + ++ G + C
Sbjct: 101 GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCR 160
Query: 206 AENGVG 211
E +
Sbjct: 161 TELDLR 166
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 44.8 bits (104), Expect = 4e-05
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAENGV 210
+L+C R+ W+ +N + L I +++ D G Y C++E V
Sbjct: 551 AELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 211 GKGTRRNIAVEVEFAPVITVPKPRL 235
T + + V VPKP +
Sbjct: 610 KNKTVFQVVAKHVLE-VKVVPKPVV 633
Score = 33.2 bits (74), Expect = 0.15
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 98 LLVKDIQETDAGYYRC----QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
LL+ ++ E D+G Y+C +V ++ A+ L+V+ P T S+V +EG +
Sbjct: 588 LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRI 647
Query: 154 QLECFAGGHPTP 165
+
Sbjct: 648 ATKVLVASTKHH 659
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 41.1 bits (96), Expect = 8e-05
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP----ISTGSSLIIRDSRFAIRYDTAS 93
+G V+L C V + W+ + + +++ + I D + ++
Sbjct: 18 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 77
Query: 94 -----STYTLLVKDIQETDAGYYRCQVIIG 118
+ Y L + + + GYY C VI
Sbjct: 78 MRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
Score = 34.9 bits (80), Expect = 0.012
Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 40/123 (32%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISW--RRENNAILPTGGSIYRGSI------------- 188
+ GQ V L C G + SW + ++ + +Y S
Sbjct: 13 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSS 72
Query: 189 --------------LKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITV 230
L + + +KE+ G Y+C + V +
Sbjct: 73 KLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPV-------LQKVSSA 125
Query: 231 PKP 233
P
Sbjct: 126 LVP 128
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 43.7 bits (103), Expect = 8e-05
Identities = 51/332 (15%), Positives = 95/332 (28%), Gaps = 56/332 (16%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYT 97
G V + C+ + V W + + L + RF+ + ++ +
Sbjct: 15 GQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPT-RFSG--SKSGTSAS 71
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV--------VSE 149
L + ++ D Y C N+ ++ V + V+ V +
Sbjct: 72 LAISGLEAEDESDYYCASW---NSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQ 128
Query: 150 GQPVQLECFAGGH-PTP-RISWRRENNAILPTG----------GSIYRG-SILKIPQITK 196
L C P ++W+ + + + G + Y S L +
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW 187
Query: 197 EDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY- 252
+ +Y C + V K P + P L C V+ Y
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 247
Query: 253 PPPAIV-WIKEDTQQ-------VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS-- 302
P P V W VL ++ YS+S V+T+ G+
Sbjct: 248 PQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS-------------SVVTVPSSSLGTQT 294
Query: 303 YICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
YIC +K ++ + +P
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPK 326
Score = 41.4 bits (97), Expect = 4e-04
Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 39/239 (16%)
Query: 111 YRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----HPTPR 166
Y C V +N + + P V + + ++ C P +
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK 354
Query: 167 ISWRRENNAILPT--------GGSIYRG-SILKIPQITKEDRGTYYCVAENG---VGKGT 214
+W + + S YR S+L + D Y C N
Sbjct: 355 FNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEK 414
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV--WIKED--------T 264
+ A P + P + + + L C V+ + P I W T
Sbjct: 415 TISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT 474
Query: 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA---ANKLGTSEKTVEL 320
VL ++ + + + V +Q + C A ++K++ L
Sbjct: 475 PPVLDSDGSFFLYS----------KLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSL 523
Score = 41.0 bits (96), Expect = 5e-04
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 189 LKIPQITKEDRGTYYCVAENG------VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD 242
L I + ED YYC + N G GT+ + + + P +T+ P +
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 243 MDLECHVEAY-PPPAIV-WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L C + + P V W + + + + +++ +++ Q+
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADG--SPVKAGVETTKPSKQSNNKYA--ASSYLSLTPEQW 187
Query: 301 GS---YICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPL 340
S Y C+ ++ T EKTV C T+ + PL
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVA-----PTECSASTKGPSVFPL 225
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 42.2 bits (99), Expect = 8e-05
Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 45/214 (21%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPR---ISWRRENNAILPT--------GG 181
PP D V++ ++ C SW ++ +
Sbjct: 8 PPKPKD------VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFN 61
Query: 182 SIYRG-SILKIPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
S +R S L I + + C + + AP + P Q
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQ 121
Query: 238 ALQYDMDLECHVEA-YPPPAIV-WIKED--------TQQVLTNNQHYSISHFATADEFTD 287
+ + L C + +P V W TQ ++ + Y +
Sbjct: 122 MAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYS--------- 172
Query: 288 TTIRVITIEKRQYGSYICRA---ANKLGTSEKTV 318
+ V ++ C +EK++
Sbjct: 173 -KLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSL 205
Score = 30.6 bits (69), Expect = 0.54
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 31 SQEQIKDIGGTVELKCSV----QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
+ + I T ++ C V + + W VD +V +S F
Sbjct: 10 KPKDVLTITLTPKVTCVVVDISKDDPEVQFSW-FVDDVEVHTAQTKPREEQ---FNSTF- 64
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQV 115
S L + + ++C+V
Sbjct: 65 ------RSVSELPIMHQDWLNGKEFKCRV 87
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 41.1 bits (96), Expect = 9e-05
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 39 GGTVELKCSVQ----YAQDYPVIWMKVDRNKVTEPLPI--STGSSLIIRDSRFAIRY--- 89
G V L CS + D W + G I F R
Sbjct: 14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73
Query: 90 -DTASSTYTLLVKDIQETDAGYYRCQVII--GINNKISAEVDLQVR-RPP 135
D + ++++ ++ +D G + C V I K +++V L V + P
Sbjct: 74 GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK-TSQVTLYVFEKVP 122
Score = 31.5 bits (71), Expect = 0.16
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
+ + +A G P + S GSI I + D GT+ C +
Sbjct: 43 GGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI-VIHNLDYSDNGTFTCDVK 101
Query: 208 NGVGKGTR 215
N +
Sbjct: 102 NPPDIVGK 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 9e-05
Identities = 67/429 (15%), Positives = 120/429 (27%), Gaps = 128/429 (29%)
Query: 47 SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST----------- 95
VQ D+ + W+ + E + L D + R D +S+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 96 --------Y--TLL----VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
Y LL V++ + +A C++++ K + + D+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 142 TRSLVVSEGQPVQLECFA---------------GGHPTPRIS---------------WRR 171
+ +L E +P R+S W+
Sbjct: 295 SMTLTPDEV----KSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKH 349
Query: 172 EN------------NAILPTGGSIYRG-----SIL----KIPQITKE---DRGTYYCVAE 207
N N + P + YR S+ IP I V
Sbjct: 350 VNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-M 405
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH---VEAYPPPAIVWIKEDT 264
V K + ++ + I++P L ++ + + H V+ Y P + +D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDL 464
Query: 265 QQVLTNNQHYS-IS-HFATADE---------------FTDTTIRVITIEK---------- 297
+ YS I H + F + IR +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 298 ---RQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT 354
+ Y YIC K E+ V +P S+ L + +A + AE
Sbjct: 525 QQLKFYKPYICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDL--LRIA-LMAEDEA 578
Query: 355 SWEPQRKQL 363
+E KQ+
Sbjct: 579 IFEEAHKQV 587
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 40.6 bits (95), Expect = 1e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 29 YISQEQIK-DIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPIST---GSSLII 80
+E I+ G T L C + W+ + I
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 81 RDSRFAIR-----YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
R D S ++ V ++Q +D G Y+C+V + ++ L V
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKIHLVV 123
Score = 29.5 bits (66), Expect = 0.83
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 33/116 (28%)
Query: 141 STRSLVVSEGQPVQLECF----AGGHPTPRISWRRENNA--------ILPTGGSIYRGSI 188
+ ++G+ L C I W IL +G IY
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 189 --------------------LKIPQITKEDRGTYYCVAENGVGKGTRR-NIAVEVE 223
+ + + D GTY C + G ++ ++ V V+
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 41.8 bits (98), Expect = 1e-04
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 25/195 (12%)
Query: 147 VSEGQPVQLECFAGGHPTP---RISWRRENNAILPTG------GSIYRG-SILKIPQITK 196
+ G L C G +W + G Y S+L
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 75
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV---PKPRLGQALQYDMDLECHVEAYP 253
T+ C A K + V P P AL + L C +
Sbjct: 76 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 135
Query: 254 PPAIV--WIKEDTQQVLTNNQHYSISHFATADEFTDT-----TIRVITIEKRQYGSYICR 306
P ++ W++ + L ++ + + + T T +RV + ++ ++ C
Sbjct: 136 PKDVLVRWLQGSQE--LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM 193
Query: 307 A---ANKLGTSEKTV 318
A L ++KT+
Sbjct: 194 VGHEALPLAFTQKTI 208
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 40.4 bits (94), Expect = 1e-04
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 19/112 (16%)
Query: 39 GGTVELKCSVQ----YAQDYPVIWMKVDRNKVTEPLPI---------------STGSSLI 79
GGTVEL C + V W + D + + S S +
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ TL + + D G Y C+ + L+V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.3 bits (68), Expect = 0.48
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 166 RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYC 204
R+S+ + + + + L + +T ED G Y C
Sbjct: 72 RLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 42.6 bits (100), Expect = 2e-04
Identities = 42/303 (13%), Positives = 84/303 (27%), Gaps = 60/303 (19%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQ--YAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
P++ ++ V L C V+ + + V W + P S L
Sbjct: 117 TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL- 175
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR------R 133
Y T SS+ T+ + C V + S +VD ++ +
Sbjct: 176 ---------Y-TLSSSVTVPS---SPRPSETVTCNVA---HPASSTKVDKKIVPRDCGCK 219
Query: 134 PPVISDNSTRSL---------VVSEGQPVQLECFAGG--HPTPRISW-RRENNAILPTGG 181
P + + S+ + ++ C P + + +N + T
Sbjct: 220 PCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ 279
Query: 182 SIYRG----------SILKIPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVI 228
+ R S L I + + C + + AP +
Sbjct: 280 TQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQV 339
Query: 229 TVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKED--------TQQVLTNNQHYSISH 278
P Q + + L C + + P + W + TQ ++ + Y +
Sbjct: 340 YTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYS 399
Query: 279 FAT 281
Sbjct: 400 KLN 402
Score = 41.1 bits (96), Expect = 4e-04
Identities = 41/227 (18%), Positives = 69/227 (30%), Gaps = 40/227 (17%)
Query: 146 VVSEGQPVQLECFA-GGHPTP-RISWRREN--------NAILPTGGSIY-------RGSI 188
+ G V++ C A G T I W ++ I P+ + ++
Sbjct: 10 LARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATL 69
Query: 189 ----------LKIPQITKEDRGTYYCVAENGV---GKGTRRNIAVEVEFAPVITVPKPRL 235
+ + +T +D YYCV E V G+GT ++ P + P
Sbjct: 70 TRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGS 129
Query: 236 GQALQYDMDLECHVEAY-PPPAIV-WIK-EDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
+ L C V+ Y P P V W + V T + + T
Sbjct: 130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT------ 183
Query: 293 ITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLP 339
+ R + C A+ +S K + C P +
Sbjct: 184 VPSSPRPSETVTCNVAHP-ASSTKVDKKIVPRDCGCKPCICTVPEVS 229
Score = 29.5 bits (66), Expect = 1.8
Identities = 52/339 (15%), Positives = 103/339 (30%), Gaps = 54/339 (15%)
Query: 39 GGTVELKCSVQ-YA-QDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRD----SRFAIRYDT 91
G +V++ C Y Y + W+K + E + I+ S + + + D
Sbjct: 14 GASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDR 73
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGIN---NKISAEVDLQVRRPPVISDNSTRSLVVS 148
+S+T + + + D+ Y C + + V PP + + S +
Sbjct: 74 SSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQT 133
Query: 149 EGQPVQLECFAGG-HPTP-RISWRRENNAILPTG---------GSIYRG-SILKIPQITK 196
V L C G P P ++W N+ L +G +Y S + +P +
Sbjct: 134 -NSMVTLGCLVKGYFPEPVTVTW---NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SP 188
Query: 197 EDRGTYYC-VAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY------------DM 243
T C VA + I P + +
Sbjct: 189 RPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTP 248
Query: 244 DLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV---ITIEKR 298
+ C V P + + +N + +E ++T RV + I +
Sbjct: 249 KVTCVVVDISKDDPEVQFSW------FVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQ 302
Query: 299 QYGS---YICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
+ + + CR + + + ++ PQ
Sbjct: 303 DWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYT 341
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 41.5 bits (97), Expect = 2e-04
Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 3/140 (2%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + CS + Y + W + + K E L + T + + R + +T L
Sbjct: 15 GDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYL 74
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
+K Q D+ Y C G L V D + L S+ + C
Sbjct: 75 YIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKSV-CL 133
Query: 159 AGGHP--TPRISWRRENNAI 176
T + + I
Sbjct: 134 FTDFDSQTNVSQSKDSDAYI 153
Score = 36.1 bits (83), Expect = 0.011
Identities = 27/149 (18%), Positives = 35/149 (23%), Gaps = 33/149 (22%)
Query: 143 RSLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIYRG- 186
+SL V EG C P + S
Sbjct: 8 QSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNT 67
Query: 187 ----SILKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITVPKPRLGQ- 237
S L I ED TY C G G GT + P I P P + Q
Sbjct: 68 KEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTS------LTVIPNIQNPDPAVYQL 121
Query: 238 -ALQYDMDLECHVEAYPP-PAIVWIKEDT 264
+ C + + K+
Sbjct: 122 RDSKSSDKSVCLFTDFDSQTNVSQSKDSD 150
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.9 bits (97), Expect = 3e-04
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH 162
+ + I+ + P + + ++ L C
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES- 526
Query: 163 PTPRISWRRENNAILPTGGSIYRGS-ILKIPQITKEDRGTYYCVA-ENGVGKGTRR 216
SWR + N + IL I +T + G Y+C A E + +
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQH 582
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 40.7 bits (95), Expect = 6e-04
Identities = 42/293 (14%), Positives = 74/293 (25%), Gaps = 32/293 (10%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQ--YAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
P++ ++ G +V L C V+ + + + W + P S L
Sbjct: 120 KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 179
Query: 79 IIRDSRFAI-RYDTASSTYTLLVK---DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
S + S + T V + D I + P
Sbjct: 180 YTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGP 239
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRRE-NNAILPTGGSIYRG----- 186
V V+ + C P + NN + T +
Sbjct: 240 SVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299
Query: 187 -----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---FAPVITVPKPRLGQA 238
S L I + C N + + AP + V P +
Sbjct: 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEM 359
Query: 239 LQYDMDLECHVEAYPPP--AIVWIKED--------TQQVLTNNQHYSISHFAT 281
+ + L C V + P + W T+ VL ++ Y +
Sbjct: 360 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLR 412
Score = 35.3 bits (81), Expect = 0.035
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 189 LKIPQITKEDRGTYYCVAENGV------GKGTRRNIAVEVEFAPVITVPKPRLGQALQYD 242
L++ ++ ED YYC G G+GT ++ AP + P G
Sbjct: 81 LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSS 140
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ L C V+ Y P V + ++ + + + +D +T ++ +T S
Sbjct: 141 VTLGCLVKGY-FPEPVTLTWNSGSLSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPSQS 197
Query: 303 YICRAANKLGTSEKTVEL---FESIIPVCPPQTQPSELLPLRNVNM 345
C A+ +++ ++ +I P P + LL +V +
Sbjct: 198 ITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFI 243
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 39.9 bits (93), Expect = 6e-04
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V++ C+ Q + + W + + L + RF+ + L
Sbjct: 14 GAIVQINCTYQTSGFNGLFWYQQHAGEAPTFL-SYNVLDGLEEKGRFSSFLSRSKGYSYL 72
Query: 99 LVKDIQETDAGYYRCQV 115
L+K++Q D+ Y C V
Sbjct: 73 LLKELQMKDSASYLCAV 89
Score = 31.0 bits (70), Expect = 0.45
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 36/118 (30%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISW-------------RRENNAILPTGGSIYRGSI-- 188
+ +EG VQ+ C + W + + G + +
Sbjct: 8 EMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGR--FSSFLSR 65
Query: 189 ------LKIPQITKEDRGTYYCVAENGV-------GKGTRRNIAVEVEFAPVITVPKP 233
L + ++ +D +Y C + G+GT + P I P P
Sbjct: 66 SKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTS------LIVHPYIQNPDP 117
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 39 GGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G ++ + C V+ ++ W R P S I R+ + S ++
Sbjct: 15 GESLTINCVVRDSRCVLSTGYWY---RKP-----PGSRNEESISDGGRYVETVNRGSKSF 66
Query: 97 TLLVKDIQETDAGYYRCQV 115
+L + D+ D+G YRC+
Sbjct: 67 SLRINDLTVKDSGTYRCKP 85
Score = 30.8 bits (70), Expect = 0.24
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 22/96 (22%)
Query: 139 DNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRRENNAILPTGG---SIYRGS------ 187
D + + + G+ + + C W R+ P SI G
Sbjct: 4 DQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKP----PGSRNEESISDGGRYVETV 59
Query: 188 -------ILKIPQITKEDRGTYYCVAENGVGKGTRR 216
L+I +T +D GTY C E+ G
Sbjct: 60 NRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAV 95
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV--PKPRLGQALQYDMDLE 246
+P++ GTY +G + + + V P +++ + +L
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELL 314
Query: 247 CHVEAYPPPAIV---WIK---EDTQQVLTNNQHYSISHFATADE-FTDT-TIRVITIEKR 298
C V + P + W + Q + + +D + + ++ +
Sbjct: 315 CLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTE 374
Query: 299 QYG-SYICRAANK-----LGTSEKTVE 319
Q+G Y CR + ++E T+E
Sbjct: 375 QHGARYACRIHHPSLPASGRSAEVTLE 401
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 38.5 bits (89), Expect = 0.001
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
GG L C+ W + + + L +S S ++ RF + AS +L
Sbjct: 17 GGMASLNCTSSDRNFQYFWWYRQHSGEGPKAL-MSIFSDGDKKEGRFTAHLNKASLHVSL 75
Query: 99 LVKDIQETDAGYYRCQVIIGINN 121
++D Q +D+ Y C N
Sbjct: 76 HIRDSQPSDSALYFCAASEQNNY 98
Score = 33.5 bits (76), Expect = 0.078
Identities = 31/182 (17%), Positives = 50/182 (27%), Gaps = 45/182 (24%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIYRGS- 187
SL V EG L C +G P +S + + + +
Sbjct: 11 SLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKAS 70
Query: 188 ---ILKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVEVEFAPVITVPKPRLG 236
L I D Y+C A G GTR ++ P I P P +
Sbjct: 71 LHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSV------FPYIQNPDPAVY 124
Query: 237 QALQYDMDLE--CHVEAYPP-PAIVWIKEDTQQ-----VLT----NNQHYSISHFATADE 284
Q + C + + K+ VL + + S ++ +
Sbjct: 125 QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSD 184
Query: 285 FT 286
F
Sbjct: 185 FA 186
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 38.4 bits (89), Expect = 0.002
Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 36/176 (20%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIY---- 184
+ +SE + + C ++G P + NN G
Sbjct: 9 QVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKG 68
Query: 185 -RGSILKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITVPKPRLGQAL 239
L+ + + D YYC A +G G GT+ + ++ V + R ++
Sbjct: 69 TTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDP-AVYQLRDSKSS 127
Query: 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLT---------NNQHYSISHFATADEFT 286
+ L + K+ + + + S ++ +F
Sbjct: 128 DKSVCLFTDF--DSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 181
Score = 36.9 bits (85), Expect = 0.006
Identities = 14/82 (17%), Positives = 28/82 (34%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
+ + C+ + W + + L T ++ F YD ++++ L
Sbjct: 15 NDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHL 74
Query: 99 LVKDIQETDAGYYRCQVIIGIN 120
+QE D+ Y C G
Sbjct: 75 QKTSVQEIDSAVYYCAANSGTY 96
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 37.5 bits (86), Expect = 0.002
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 39 GGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS-- 93
GGTVEL CS Q Q + W+K + + + S
Sbjct: 19 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 78
Query: 94 -----------STYTLLVKDIQETDAGYYRCQVIIG 118
+ TL + + D G Y CQV
Sbjct: 79 DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
Score = 27.5 bits (60), Expect = 4.0
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 36/106 (33%)
Query: 145 LVVSEGQPVQLEC---FAGGHPTPRISWRRENNAILPTGGSI------------------ 183
+ V G V+L C A P ISW + + T
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 73
Query: 184 ------YRGSI---------LKIPQITKEDRGTYYCVAENGVGKGT 214
+ G L++ + +D G Y+C +
Sbjct: 74 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 39.1 bits (91), Expect = 0.002
Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 26/174 (14%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGG--HPTPRISW-RRENNAILPTGGSIYRG---- 186
P V + + ++ C H P + + + + + R
Sbjct: 248 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 307
Query: 187 ------SILKIPQITKEDRGTYYCVAENGVGKGTRRNI---AVEVEFAPVITVPKPRLGQ 237
S+L + + Y C N A P + P +
Sbjct: 308 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 367
Query: 238 ALQYDMDLECHVEAYPPP--AIVWIKED--------TQQVLTNNQHYSISHFAT 281
+ + L C V+ + P A+ W T VL ++ + + T
Sbjct: 368 LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT 421
Score = 32.2 bits (73), Expect = 0.30
Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 189 LKIPQITKEDRGTYYCVAENGV---------------GKGTRRNIAVEVEFAPVITVPKP 233
+++ + D YYC GKGT ++ P + P
Sbjct: 81 MELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP 140
Query: 234 RLGQALQYDMDLECHVEAY-PPPAIV-WIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291
L C V+ Y P P V W LT+ H + ++ ++ +++
Sbjct: 141 SSKSTSGGTAALGCLVKDYFPEPVTVSW----NSGALTSGVHTFPAVLQSSGLYSLSSVV 196
Query: 292 VITIEKRQYGSYICRAANKLGTS--EKTVELFESIIPVCPPQTQPSELLPLRNV 343
+ +YIC +K + +K E P ELL +V
Sbjct: 197 TVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSV 250
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 39.2 bits (91), Expect = 0.002
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 8/158 (5%)
Query: 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAI 87
+ +Q IG + LKC + + K++ + TE + + DS +
Sbjct: 370 AASAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGR-TEAWKVLSPQGGGPWDSVARV 428
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVV 147
+L + + D G +RCQ + + + ++V + P + + +
Sbjct: 429 -----LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASEL 483
Query: 148 SEGQPVQL-ECFA-GGHPTPRISWRRENNAILPTGGSI 183
+ G P ++ C + G +P +SW + ++P +
Sbjct: 484 TAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGV 521
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 37.8 bits (88), Expect = 0.002
Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 46/209 (22%)
Query: 144 SLVVSEGQPVQLECFAGG---------HP--TPRISWRRENNAILPTG------GSIYRG 186
S S GQ + + C H P++ N P+G GS
Sbjct: 9 SASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNK--RPSGVPDRFSGSKSGN 66
Query: 187 S-ILKIPQITKEDRGTYYCVAENG-----VGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
+ L + + +D YYC + G G GT+ + + + AP +T+ P +
Sbjct: 67 TASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQA 126
Query: 241 YDMDLECHVEAYPP--PAIVWIK---------EDTQQVLTNNQHYSISHFATADEFTDTT 289
L C + + P + W E T +N Y+ S +
Sbjct: 127 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS----------SY 176
Query: 290 IRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ + + + + SY C+ ++ T EKTV
Sbjct: 177 LSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 37.3 bits (86), Expect = 0.004
Identities = 20/77 (25%), Positives = 28/77 (36%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L CS + Y + W + D K L + S R D +S TL
Sbjct: 15 GENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTL 74
Query: 99 LVKDIQETDAGYYRCQV 115
+ Q D+ Y C V
Sbjct: 75 YIAASQPGDSATYLCAV 91
Score = 29.6 bits (66), Expect = 1.3
Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 34/118 (28%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIY---- 184
+L V EG+ + L C G T + + +
Sbjct: 9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKS 68
Query: 185 -RGSILKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVEVEFAPVITVPKP 233
S L I D TY C G+GT + P I P P
Sbjct: 69 SGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIV------HPYIQNPDP 120
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 37.6 bits (87), Expect = 0.004
Identities = 33/225 (14%), Positives = 56/225 (24%), Gaps = 61/225 (27%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPT-----------PR-ISWRRENNAILPTG------GSI 183
R+ V G V L C H R I + + S
Sbjct: 7 RNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR 66
Query: 184 YRGS--ILKIPQITKEDRGTYYCV--------AENGVGKGTR--RNIAVEVEFAPVITVP 231
L + T Y+C AE G GTR + P +++
Sbjct: 67 PSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLF 126
Query: 232 KPRLGQALQYDM-DLECHVEAYPPPAI--VW----------IKEDTQQVLTNNQHYSISH 278
+P + L C + P + W + D Q +N Y +S
Sbjct: 127 EPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLS- 185
Query: 279 FATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVE 319
+ + + + + C+ + E
Sbjct: 186 ------------SRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 218
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 37.3 bits (87), Expect = 0.004
Identities = 43/217 (19%), Positives = 69/217 (31%), Gaps = 51/217 (23%)
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRR-------ENNAILPTGGSIYRGS-------- 187
S S G +L C H T I W + + L GS G
Sbjct: 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSG 68
Query: 188 -------ILKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVEVEFAPVITVPK 232
L I I ED Y C + + G GT+ + + + P +TV
Sbjct: 69 SSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP 128
Query: 233 PRLGQALQYDMDLECHVEA-YPPPAIV-WIKED---TQQVLT-----NNQHYSISHFATA 282
P + + L C + P V W TQ V T + S
Sbjct: 129 PSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMAS----- 183
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
+ + + + + R + S+ C+ ++ T EK++
Sbjct: 184 -----SFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS 215
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 37.6 bits (87), Expect = 0.004
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 18/139 (12%)
Query: 146 VVSEGQPVQLEC----FAGGHPTPRISWRRENNAILP---------TGGSIYRGSILKIP 192
V+ G ++ C + P R SW ++ + + ++ S L I
Sbjct: 28 VLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIV 87
Query: 193 QITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+ + T+ C +G + P + P + Q + + C V
Sbjct: 88 ERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMV 147
Query: 250 EA-YPPPAIV-WIKEDTQQ 266
+ YPP W Q
Sbjct: 148 KGFYPPDIYTEWKMNGQPQ 166
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 35.8 bits (83), Expect = 0.004
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 39 GGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G ++ + C ++ A W + I + R+ ++ S ++
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKK--------SGEGNEESISKGGRYVETVNSGSKSF 66
Query: 97 TLLVKDIQETDAGYYRCQV 115
+L + D+ D G YRC +
Sbjct: 67 SLRINDLTVEDGGTYRCGL 85
Score = 29.6 bits (67), Expect = 0.64
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 143 RSLVVSEGQPVQLECFAGG--HPTPRISWRR-----ENNAILPTGGSIYRGSI------- 188
RS+ G+ + + C + W R N + GG R
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGG---RYVETVNSGSK 64
Query: 189 ---LKIPQITKEDRGTYYCVAENGVGKGT 214
L+I +T ED GTY C G
Sbjct: 65 SFSLRINDLTVEDGGTYRCGLGVAGGYCD 93
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 37.4 bits (86), Expect = 0.005
Identities = 17/77 (22%), Positives = 26/77 (33%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G L+C+ D + W K D K L + + R++ D + TL
Sbjct: 16 GENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTL 75
Query: 99 LVKDIQETDAGYYRCQV 115
+ D Y C V
Sbjct: 76 HITATLLDDTATYFCVV 92
Score = 34.7 bits (79), Expect = 0.037
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 30/114 (26%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSI----- 183
SLVV +G+ L+C G + + S
Sbjct: 10 SLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKD 69
Query: 184 YRGSILKIPQITKEDRGTYYCVAENG----VGKGTRRNIAVEVEFAPVITVPKP 233
+ S L I +D TY+CV + G GT+ + P I P+P
Sbjct: 70 AKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIV------IPYIQNPEP 117
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 37.3 bits (86), Expect = 0.005
Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 63/225 (28%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRR-------------ENNAILPTGG-----SI 183
R ++ +G L C GH + W + G S+
Sbjct: 10 RHIIKEKGGRSVLTCIPISGHSN--VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSV 67
Query: 184 YRGS----ILKIPQITKEDRGTYYCVAENG--------VGKGTRRNIAVEVEFAPVITVP 231
+ + + + ED Y+C + G + P +++
Sbjct: 68 QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF 127
Query: 232 KPRLGQALQYDM-DLECHVEAYPPPA--IVW----------IKEDTQQVLTNNQHYSISH 278
+P + L C + P + W + D Q +N YS+S
Sbjct: 128 EPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLS- 186
Query: 279 FATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVE 319
+ + + + + C+ + E
Sbjct: 187 ------------SRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 219
Score = 33.4 bits (76), Expect = 0.091
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 25/182 (13%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS- 93
IK+ GG L C + V+W + K + L I + R+ +
Sbjct: 13 IKEKGGRSVLTCI-PISGHSNVVWYQQTLGKELKFL-IQHYEKVERDKGFLPSRF-SVQQ 69
Query: 94 ---STYTLLVKDIQETDAGYYRCQVIIGINN--------KISAEVDLQVRRPPVISDNST 142
+ + ++ D+ Y C + + +++ DL+ PP +S
Sbjct: 70 FDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEP 129
Query: 143 RSLVVSEGQPVQLECFAGG--HPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
++ Q L C A G +SW G + PQ KE
Sbjct: 130 SKAEIANKQKATLVCLARGFFPDHVELSWW--------VNGKEVHSGVSTDPQAYKESNY 181
Query: 201 TY 202
+Y
Sbjct: 182 SY 183
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 37.0 bits (86), Expect = 0.005
Identities = 40/179 (22%), Positives = 55/179 (30%), Gaps = 49/179 (27%)
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ----------------------VIIGIN 120
SR +I DT+ + L + +Q D G Y C V +
Sbjct: 65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSG 124
Query: 121 NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE-------- 172
S + S L S G V L C + ++W ++
Sbjct: 125 GGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKL 184
Query: 173 ---NNAILPTG------GSIYRGS----ILKIPQITKEDRGTYYCVAENG---VGKGTR 215
N L TG GS GS L I + ED TY+C N G GT+
Sbjct: 185 LIYNTNSLQTGIPSRFSGS---GSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTK 240
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 37.0 bits (86), Expect = 0.006
Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRE-----------NNAILPTG------GSIYRG 186
+ V+ GQ + C + W ++ + P+G GS
Sbjct: 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGS---N 65
Query: 187 S----ILKIPQITKEDRGTYYCVAENG------VGKGTRRNIAVEVEFAPVITVPKPRLG 236
S L I + D YYC + +G G GT+ + + AP +T+ P
Sbjct: 66 SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSE 125
Query: 237 QALQYDMDLECHVEAYPPPA--IVWIKED---TQQVLTNNQHYSISHFATADEFTDTTIR 291
+ L C + + P + W + TQ V T S S + + +
Sbjct: 126 ELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYM-----ATSYLT 180
Query: 292 VITIEKRQYGSYICRAANKLGTSEKTV 318
+ + ++IC+ + T EK++
Sbjct: 181 MTADAWKSRNTFICKVTHGGNTVEKSL 207
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 36.5 bits (84), Expect = 0.006
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V L C+ Q + W N+ + L S + F +SS++ L
Sbjct: 16 GLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHL 75
Query: 99 LVKDIQETDAGYYRCQVIIGINN 121
Q +D+ Y C + + ++
Sbjct: 76 QKSSAQLSDSALYYCALFLASSS 98
Score = 28.8 bits (64), Expect = 2.0
Identities = 26/183 (14%), Positives = 46/183 (25%), Gaps = 46/183 (25%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIY---- 184
+ ++EG PV L C P + +N G
Sbjct: 10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKS 69
Query: 185 -RGSILKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVEVEFAPVITVPKPRL 235
L+ D YYC G+GT ++ P I P+P +
Sbjct: 70 SSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSV------VPNIQNPEPAV 123
Query: 236 GQ--ALQYDMDLECHVEAYPPP-AIVWIKEDTQQV---------LTNNQHYSISHFATAD 283
Q + C + + E + +++ ++
Sbjct: 124 YQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQT 183
Query: 284 EFT 286
FT
Sbjct: 184 SFT 186
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 36.9 bits (86), Expect = 0.006
Identities = 38/213 (17%), Positives = 67/213 (31%), Gaps = 50/213 (23%)
Query: 144 SLVVSEGQPVQLECFAGG--------------HP--TPRISWRRENNAILPTG------G 181
+L S G+ V L C + P NN G G
Sbjct: 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNN--RAPGVPARFSG 66
Query: 182 SIYRGS----ILKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITVPKP 233
S L I ED Y+C + G GT+ + + + +P +T+ P
Sbjct: 67 S---LIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPP 123
Query: 234 RLGQALQYDMDLECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291
+ L C + + P + W + T T + + ++
Sbjct: 124 SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPV--TAGMETT-----QPSKQSNNKYM 176
Query: 292 ---VITIEKRQY---GSYICRAANKLGTSEKTV 318
+T+ R + SY C+ ++ +S KT+
Sbjct: 177 ASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 35.5 bits (82), Expect = 0.007
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLI-IRDSRFAIRYDTASSTY 96
G CS+ +++D + W ++ + TE + ++D+RF I +
Sbjct: 24 GANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDF 83
Query: 97 TLLVKDIQETDAGYYRCQVI 116
+ + D + D+G Y C I
Sbjct: 84 HMNILDTRRNDSGIYLCGAI 103
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 35.5 bits (82), Expect = 0.007
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 39 GGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G ++ + C ++ A W R K ST I R+ + S ++
Sbjct: 15 GESLTINCVLRDASFELKDTGWY---RTK-----LGSTNEQSISIGGRYVETVNKGSKSF 66
Query: 97 TLLVKDIQETDAGYYRCQV 115
+L + D++ D+G Y+CQ
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
Score = 28.2 bits (63), Expect = 2.5
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 141 STRSLVVSEGQPVQLECF--AGGHPTPRISWRR----ENNAILPTGGSIYRGSI------ 188
+ R+ G+ + + C W R N + G Y ++
Sbjct: 6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKS 65
Query: 189 --LKIPQITKEDRGTYYC 204
L+I + ED GTY C
Sbjct: 66 FSLRISDLRVEDSGTYKC 83
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 36.4 bits (84), Expect = 0.007
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 29/113 (25%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIY---- 184
SL V EG+ L C F G P I+ R +N +I+
Sbjct: 9 SLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKR 68
Query: 185 -RGSILKIPQITKEDRGTYYCVAENGV---GKGTRRNIAVEVEFAPVITVPKP 233
+ L I D TY+C A + G GT+ + P I P+P
Sbjct: 69 EKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQ------LVVKPNIQNPEP 115
Score = 35.6 bits (82), Expect = 0.012
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L CS + + W + L S D RF I ++ ++L
Sbjct: 15 GETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSL 74
Query: 99 LVKDIQETDAGYYRCQV 115
+ D Q D+ Y C
Sbjct: 75 HIADSQPGDSATYFCAA 91
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 36.8 bits (85), Expect = 0.008
Identities = 39/241 (16%), Positives = 66/241 (27%), Gaps = 65/241 (26%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRR-------------ENNAILPTG--------G 181
+LV G P+ LEC G P + W R + +
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASR 68
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGV---------GKGTRRNIAVEVE--FAPVITV 230
R IL ++ D G Y C V G+G+ + ++ F P + V
Sbjct: 69 PQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAV 128
Query: 231 PKPRLGQALQYDM-DLECHVEAYPPPA--IVWIKED--------------TQQVLTNNQH 273
+P + L C + P + W +Q N+
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 188
Query: 274 YSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
Y++S + +RV + + C+ + P T
Sbjct: 189 YALS----------SRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRAKPVT 233
Query: 333 Q 333
Q
Sbjct: 234 Q 234
Score = 32.5 bits (74), Expect = 0.18
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 20/155 (12%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS----RFAIRYDTASS 94
G + L+C+V+ + + W + + + L S G S +
Sbjct: 16 GSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIG--QISSEVPQNLSASRPQ-DR 72
Query: 95 TYTLLVKDIQETDAGYYRCQVIIGINN-----------KISAEVDLQVRRPPVISDNSTR 143
+ L K + +D+G+Y C + + ++ DL PP ++
Sbjct: 73 QFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPS 132
Query: 144 SLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAI 176
+S Q L C A G P +SW +
Sbjct: 133 EAEISHTQKATLVCLATGFFPDHVELSWWVNGKEV 167
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 36.7 bits (85), Expect = 0.008
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 11/139 (7%)
Query: 189 LKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
LKI ++ ED G YYCV + G GT+ + AP +++ P Q
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADA-APTVSIFPPSSEQLTSGGAS 173
Query: 245 LECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFT-DTTIRVITIEKRQYG 301
+ C + + P + W K D + + + ++ +T+ + E ++
Sbjct: 174 VVCFLNNFYPKDINVKW-KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 232
Query: 302 SYICRAANKLGTS--EKTV 318
SY C A +K TS K+
Sbjct: 233 SYTCEATHKTSTSPIVKSF 251
Score = 28.2 bits (63), Expect = 4.7
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 17/127 (13%)
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEG 150
+ +TL + ++ D G Y C A L+++R P +S S
Sbjct: 111 TDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVS-IFPPSSEQLTS 169
Query: 151 QPVQLECFAGGH--PTPRISWRRENNAILP----------TGGSIYRGS-ILKIPQITKE 197
+ CF + W+ + + + S Y S L + + E
Sbjct: 170 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE 229
Query: 198 DRGTYYC 204
+Y C
Sbjct: 230 RHNSYTC 236
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.8 bits (79), Expect = 0.009
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITK-EDRGT 201
V G V L C +P I W+ + I L + + ++ E G
Sbjct: 17 VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 74
Query: 202 YYCVAENGVGK 212
Y C +
Sbjct: 75 YVCYPRGSKPE 85
Score = 30.5 bits (68), Expect = 0.30
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 20/95 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G TV L C ++W D + + I D L
Sbjct: 21 GTTVILTCPQY--PGSEILWQHND-----KNIGGDEDDKNIGSDED------------HL 61
Query: 99 LVKDIQET-DAGYYRCQVIIGINNKISAEVDLQVR 132
+K+ E +GYY C + + L+ R
Sbjct: 62 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 96
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 36.2 bits (83), Expect = 0.009
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G L+C+ + + W K D + L I T S + R+ D + +L
Sbjct: 18 GKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSL 77
Query: 99 LVKDIQETDAGYYRCQV 115
+ Q +D+ Y C V
Sbjct: 78 HITASQLSDSASYICVV 94
Score = 32.7 bits (74), Expect = 0.14
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 143 RSLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIY--- 184
+SL++ EG+ L+C G P N +
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA 70
Query: 185 --RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI--AVEVEFAPVITVPKPRLGQ 237
+ S L I D +Y CV + R ++ P I P P + Q
Sbjct: 71 DTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQ 127
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 35.0 bits (80), Expect = 0.010
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 39 GGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPIS-TGSSLIIRDSRFAIRYDTASS 94
G C + V ++ +++TE + T + + S
Sbjct: 14 HGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNES 73
Query: 95 TYTLLVKDIQETDAGYYRCQV 115
L ++ ++ D G Y C+V
Sbjct: 74 RVNLTIQGLRAVDTGLYLCKV 94
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 36.6 bits (84), Expect = 0.010
Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 17/157 (10%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS- 93
+K G +++C + V W + ++N + L ++ + R+ +A
Sbjct: 38 VKGQGQKAKMRCIPEKGHPV-VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRF-SAEC 95
Query: 94 ---STYTLLVKDIQETDAGYYRCQVIIGINN---------KISAEVDLQVRRPPVISDNS 141
S +L ++ + D+ Y C + + ++ DL+ PP ++
Sbjct: 96 PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE 155
Query: 142 TRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAI 176
+S Q L C A G +SW +
Sbjct: 156 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 192
Score = 33.1 bits (75), Expect = 0.13
Identities = 36/245 (14%), Positives = 64/245 (26%), Gaps = 74/245 (30%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRR-------------ENNAILPTGGSI---YR 185
R LV +GQ ++ C GHP + W + +N +L +
Sbjct: 35 RYLVKGQGQKAKMRCIPEKGHPV--VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFS 92
Query: 186 GS-------ILKIPQITKEDRGTYYCVAENGVG-------KGTRRNIAV--EVEFAPVIT 229
L+I D Y C + GTR + + F P +
Sbjct: 93 AECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVA 152
Query: 230 VPKPRLGQALQYDMD-LECHVEAYPPPA--IVWIKED--------------TQQVLTNNQ 272
V +P + L C + P + W +Q N+
Sbjct: 153 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 212
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVC 328
Y++S + + + + + C+ +
Sbjct: 213 RYALSSR-------------LRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRA 254
Query: 329 PPQTQ 333
P TQ
Sbjct: 255 KPVTQ 259
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 34.7 bits (79), Expect = 0.012
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 39 GGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPIS--TGSSLIIRDSRFAIRYDTAS 93
G C A + V ++ ++VTE + G+ L D ++
Sbjct: 16 RGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI-CTGTSSG 74
Query: 94 STYTLLVKDIQETDAGYYRCQV 115
+ L ++ ++ D G Y C+V
Sbjct: 75 NQVNLTIQGLRAMDTGLYICKV 96
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 35.7 bits (82), Expect = 0.013
Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 33/151 (21%)
Query: 141 STRSLVVSEGQPVQLEC--------------FAGGHPTPRISWRRENNAILPTGGSIY-- 184
S + L + EG+ + + C G P ++ +
Sbjct: 7 SPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG 66
Query: 185 ---RGSILKIPQITKEDRGTYYCVAENGV-----GKGTRRNIAVEVEFAPVITVPKPRLG 236
+ S L I D G Y C GKGT+ + P I P P +
Sbjct: 67 DARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTK------LSVKPNIQNPDPAVY 120
Query: 237 QALQYDMD--LECHVEAYPPP-AIVWIKEDT 264
Q C + + K+
Sbjct: 121 QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSD 151
Score = 33.0 bits (75), Expect = 0.12
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + + C+ + W + + + L + + R ++ A +L
Sbjct: 16 GENLTVYCNSSSVFSS-LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSL 74
Query: 99 LVKDIQETDAGYYRCQVIIGIN 120
+ Q D G Y C
Sbjct: 75 HITAAQPGDTGLYLCAGAGSQG 96
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 34.4 bits (78), Expect = 0.014
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 38 IGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G EL+C V+Y + P V W K++ + + + D + + + + S +
Sbjct: 25 AGDPFELECPVKYCANRPHVTWCKLNGT-----------TCVKLEDRQTSWKEEKNISFF 73
Query: 97 TLLVKDIQETDAGYYRCQV 115
L + + D G YRC
Sbjct: 74 ILHFEPVLPNDNGSYRCSA 92
Score = 34.4 bits (78), Expect = 0.015
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 18/114 (15%)
Query: 119 INNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRR-ENNAI 176
I+ K S +V L ++R S S + G P +LEC P ++W +
Sbjct: 3 IHGKESCDVQLYIKR------QSEHS--ILAGDPFELECPVKYCANRPHVTWCKLNGTTC 54
Query: 177 LPTGGSIYRGS--------ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ IL + D G+Y C A + + V
Sbjct: 55 VKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 35.6 bits (82), Expect = 0.017
Identities = 35/245 (14%), Positives = 68/245 (27%), Gaps = 71/245 (28%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENN-------AILPTGGSIYRGSI------- 188
R +V GQ V L C P +SW +++ L + G S+
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68
Query: 189 -------LKIPQITKEDRGTYYCVAENGV---------GKGTRRNIAVEVE--FAPVITV 230
L++ T YC + G+G++ + +++ F P + V
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAV 128
Query: 231 PKPRLGQALQYDM-DLECHVEAYPPPA--IVWIKEDT--------------QQVLTNNQH 273
+P + L C + P + W +Q N+
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSR 188
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVCP 329
Y++S + + + + + C+ +
Sbjct: 189 YALSSR-------------LRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRAK 230
Query: 330 PQTQP 334
P TQ
Sbjct: 231 PVTQI 235
Score = 29.1 bits (65), Expect = 2.3
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS----RFAIRYDTASS 94
G V L+C ++ +Q + W + D K + L + S + +
Sbjct: 16 GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWL-FTLRSPGDKEVKSLPGADYLATRV--T 72
Query: 95 TYTLLVKDIQETDAGYYRCQ 114
L ++ + C
Sbjct: 73 DTELRLQVANMSQGRTLYCT 92
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 35.3 bits (81), Expect = 0.017
Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 46/183 (25%)
Query: 144 SLVVSEGQPVQLEC----------------FAGGHPTPRISWRRENNAILPTGGSI---Y 184
S+ +E +PV L C P I N +I
Sbjct: 8 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR 67
Query: 185 RGSILKIPQITKEDRGTYYCVAENG---------VGKGTRRNIAVEVEFAPVITVPKPRL 235
+ S L + + T D YYC+ G+GT + P I P P +
Sbjct: 68 KSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTI------LTVHPNIQNPDPAV 121
Query: 236 GQ--ALQYDMDLECHVEAYPP-PAIVWIKEDTQQVLTN---------NQHYSISHFATAD 283
Q + C + + K+ + + S ++
Sbjct: 122 YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKS 181
Query: 284 EFT 286
+F
Sbjct: 182 DFA 184
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 35.4 bits (82), Expect = 0.018
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 33/150 (22%)
Query: 189 LKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
L+I ++ ED G YYC + V G GT+ + AP +++ P Q
Sbjct: 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADA-APTVSIFPPSSEQLTSGGAS 169
Query: 245 LECHVEAYPPPA--IVWIKEDTQQ----------VLTNNQHYSISHFAT--ADEFTDTTI 290
+ C + + P + W + +++ + + YS+S T DE+
Sbjct: 170 VVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY----- 224
Query: 291 RVITIEKRQYGSYICRAANKLGTS--EKTV 318
++ SY C A +K TS K+
Sbjct: 225 -------ERHNSYTCEATHKTSTSPIVKSF 247
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 33.8 bits (78), Expect = 0.021
Identities = 23/98 (23%), Positives = 29/98 (29%), Gaps = 25/98 (25%)
Query: 143 RSLVVSEGQPVQLEC--------------FAGGHPTPRISWRREN--NAILPTGGSIYRG 186
+L + EG L C + G N L + R
Sbjct: 9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERA 68
Query: 187 --SILKIPQITKEDRGTYYCVAENGV-------GKGTR 215
S L I ED GTY+C AE G GT+
Sbjct: 69 RYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQ 106
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY-T 97
G L+C+ V W + + + + +S + R +D+ + Y T
Sbjct: 16 GTDSALRCNFTTTMRS-VQWFRQNSRG--SLISLFYLASGTKENGRLKSAFDSERARYST 72
Query: 98 LLVKDIQETDAGYYRCQVIIGINN 121
L ++D Q D+G Y C +
Sbjct: 73 LHIRDAQLEDSGTYFCAAEASSGS 96
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 33.4 bits (77), Expect = 0.026
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
I R++ D S++ +L ++D++ D+G Y+C+
Sbjct: 48 TISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85
Score = 26.9 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 181 GSIYRGS---ILKIPQITKEDRGTYYCVAENGVGKGT 214
++ GS L I + ED GTY C A T
Sbjct: 57 ETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNT 93
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 34.6 bits (79), Expect = 0.030
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + CS + + + + W + + + L + + R + DT+ + +L
Sbjct: 16 GENATMNCSYKTSINN-LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSL 74
Query: 99 LVKDIQETDAGYYRCQV 115
L+ + D Y C
Sbjct: 75 LITASRAADTASYFCAT 91
Score = 30.4 bits (68), Expect = 0.68
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 143 RSLVVSEGQPVQLEC--------------FAGGHPTPRISWRRENNAILPTGGSIY---- 184
++L + EG+ + C +G I R +
Sbjct: 9 QALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTS 68
Query: 185 -RGSILKIPQITKEDRGTYYCVAEN 208
+ S L I D +Y+C +
Sbjct: 69 KKSSSLLITASRAADTASYFCATDT 93
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 34.6 bits (79), Expect = 0.030
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEP---LPISTGSSLIIRDSRFAIRYDTASST 95
G +++L+C Y+ + W + L +G ++ + F + + S+
Sbjct: 24 GASLQLRCKYSYSATPYLFWYVQYPRQ--GLQMLLKYYSGDPVVQGVNGFEAEFSKSDSS 81
Query: 96 YTLLVKDIQETDAGYYRCQV 115
+ L + +D+ Y C V
Sbjct: 82 FHLRKASVHWSDSAVYFCAV 101
Score = 31.9 bits (72), Expect = 0.26
Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 46/183 (25%)
Query: 144 SLVVSEGQPVQLEC---------------FAGGHPTPRISWRRENNAILPTGGSIYRG-- 186
+ VSEG +QL C + + + + + G
Sbjct: 18 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSK 77
Query: 187 ----SILKIPQITKEDRGTYYCVAENG-------VGKGTRRNIAVEVEFAPVITVPKPRL 235
L+ + D Y+C GKG + + +P I P P +
Sbjct: 78 SDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAK------LTVSPNIQNPDPAV 131
Query: 236 GQALQYDMDLE--CHVEAYPP-PAIVWIKEDTQQVLT---------NNQHYSISHFATAD 283
Q + C + + K+ + + + S ++
Sbjct: 132 YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS 191
Query: 284 EFT 286
+F
Sbjct: 192 DFA 194
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 34.1 bits (78), Expect = 0.042
Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 39/202 (19%)
Query: 146 VVSEGQPVQLEC----FAGGHPTPRISWRRENNAILPT--------GGSIYRG-SILKIP 192
+ + ++ C + P + +W + + S YR S+L +
Sbjct: 14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVL 73
Query: 193 QITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+ Y C N + A P + P + + + L C V
Sbjct: 74 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLV 133
Query: 250 EA-YPPPAIV-WIKED--------TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
+ YP V W T VL ++ + + + + V +Q
Sbjct: 134 KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY----------SKLTVDKSRWQQ 183
Query: 300 YGSYICRA---ANKLGTSEKTV 318
+ C A ++K++
Sbjct: 184 GNVFSCSVMHEALHNHYTQKSL 205
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 33.5 bits (77), Expect = 0.047
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 39 GGTVELKCSVQY-AQDYPVIWMKVDRNKVTEP---LPISTGSSLIIRDSRFAIRYDTASS 94
TV + C + Y + W K + E + + +++ + S
Sbjct: 15 KTTVTMDCVYETQDSSYFLFWYKQTASG--EIVFLIRQDSYKKENATVGHYSLNFQKPKS 72
Query: 95 TYTLLVKDIQETDAGYYRC 113
+ L++ Q D+ Y C
Sbjct: 73 SIGLIITATQIEDSAVYFC 91
Score = 31.5 bits (72), Expect = 0.19
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 37/121 (30%)
Query: 144 SLVVSEGQPVQLEC----------------FAGGHPT---PRISWRRENNAILPTGGSIY 184
S+ V E V ++C A G + S+++EN + +
Sbjct: 9 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ 68
Query: 185 RG---SILKIPQITKEDRGTYYCVAENGV---------GKGTRRNIAVEVEFAPVITVPK 232
+ L I ED Y+C G GT + V+ P
Sbjct: 69 KPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTL----LSVK--PGSADDA 122
Query: 233 P 233
Sbjct: 123 K 123
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 34.2 bits (78), Expect = 0.047
Identities = 33/202 (16%), Positives = 50/202 (24%), Gaps = 37/202 (18%)
Query: 144 SLVVSEGQPVQLEC--------------FAGGHPTPRI---SWRRENNAILPTGGSIYRG 186
+L + EG L C + G S +EN + S R
Sbjct: 10 ALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERR 69
Query: 187 SI-LKIPQITKEDRGTYYCVAENGVGKGTRRNI--------AVEVEFAPVITVPKPRLGQ 237
L I ED GTY+C A+ +V P P
Sbjct: 70 YSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVF 129
Query: 238 ALQYDMDLECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
++ ++ C V+ + P I A + V
Sbjct: 130 IMKNGTNVACLVKDFYPKEVTISLRSSKKIV---------EFDPAIVISPSGKYSAVKLG 180
Query: 296 EKRQYGSYICRAANKLGTSEKT 317
+ S C + T T
Sbjct: 181 QYGDSNSVTCSVQHNSETVHST 202
Score = 32.6 bits (74), Expect = 0.13
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS-STYT 97
G L+C+ V W + + + + +S + R +D+ T
Sbjct: 16 GTDSALRCNFTTTMRS-VQWFRQNSRG--SLISLFYLASGTKENGRLKSAFDSKERRYST 72
Query: 98 LLVKDIQETDAGYYRCQV 115
L ++D Q D+G Y C
Sbjct: 73 LHIRDAQLEDSGTYFCAA 90
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 34.2 bits (78), Expect = 0.047
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS- 93
I D+G V L C Y W K + E L ++ + F ++ +
Sbjct: 13 IIDMGQMVTLNCDPVSNHLY-FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQF-SVER 70
Query: 94 ---STYTLLVKDIQETDAGYYRCQVIIGINN---------KISAEVDLQVRRPPVISDNS 141
S +TL ++ D+ Y C +++ DL+ PP ++
Sbjct: 71 PDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE 130
Query: 142 TRSLVVSEGQPVQLECFA-GGHPTP-RISWRRENNAI 176
+S Q L C A G +P +SW +
Sbjct: 131 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
Score = 33.5 bits (76), Expect = 0.080
Identities = 34/245 (13%), Positives = 59/245 (24%), Gaps = 74/245 (30%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISW-------------------RRENNAILPTGGS 182
++ GQ V L C H W E + + S
Sbjct: 10 SHQIIDMGQMVTLNCDPVSNHLY--FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFS 67
Query: 183 IYRGS----ILKIPQITKEDRGTYYCVAENG---------VGKGTRRNIAVEVEFAPVIT 229
+ R LKI ED Y+C + G ++ F P +
Sbjct: 68 VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVA 127
Query: 230 VPKPRLGQALQYDM-DLECHVEAYPPPA--IVWIKED--------------TQQVLTNNQ 272
V +P + L C + P + W +Q N+
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVC 328
Y++S + + + + + C+ +
Sbjct: 188 RYALSSR-------------LRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRA 229
Query: 329 PPQTQ 333
P TQ
Sbjct: 230 KPVTQ 234
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 34.3 bits (78), Expect = 0.049
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G L+C+ V W + + + + + + R +++ TL
Sbjct: 16 GADSGLRCNFSTTMKS-VQWFQQNHRG--RLITLFYLAQGTKENGRLKSTFNSKERYSTL 72
Query: 99 LVKDIQETDAGYYRCQV 115
+KD Q D+G Y C
Sbjct: 73 HIKDAQLEDSGTYFCAA 89
Score = 31.6 bits (71), Expect = 0.32
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 24/100 (24%)
Query: 143 RSLVVSEGQPVQLEC--------------FAGGHPTPRI---SWRRENNAILPTGGSIYR 185
+L + EG L C G +EN + T S R
Sbjct: 9 PALSLYEGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKER 68
Query: 186 GSILKIPQITKEDRGTYYCVAENGV-------GKGTRRNI 218
S L I ED GTY+C AE+G G GT ++
Sbjct: 69 YSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSV 108
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.7 bits (75), Expect = 0.049
Identities = 15/72 (20%), Positives = 18/72 (25%), Gaps = 4/72 (5%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP-TGGSIYRGSILKIP 192
P +S S VS G V L C + +
Sbjct: 5 QPSLS--LHPSQGVSLGDTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFA 61
Query: 193 QITKEDRGTYYC 204
ED GTY C
Sbjct: 62 VTNLEDAGTYQC 73
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 34.3 bits (78), Expect = 0.049
Identities = 38/243 (15%), Positives = 65/243 (26%), Gaps = 72/243 (29%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRR-------------ENNAILPTGGSIYRG-- 186
+ V +G+ V+L C GH + W R + G
Sbjct: 34 SNKVTEKGKYVELRCDPISGHTA--LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFF 91
Query: 187 --------SILKIPQITKEDRGTYYCVA-----ENGVGKGTRRNIAVEVE--FAPVITVP 231
S LKI + + D Y C G GTR + +++ F P + V
Sbjct: 92 AVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVF 151
Query: 232 KPRLGQALQYDMD-LECHVEAYPPPA--IVWIKED--------------TQQVLTNNQHY 274
+P + L C + P + W +Q N+ Y
Sbjct: 152 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRY 211
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVCPP 330
S+S + + + + + C+ + P
Sbjct: 212 SLSSR-------------LRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRAKP 253
Query: 331 QTQ 333
TQ
Sbjct: 254 VTQ 256
Score = 30.4 bits (68), Expect = 0.94
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 13/154 (8%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DT 91
+ + G VEL+C + W + + E L G+ R+
Sbjct: 37 VTEKGKYVELRCDPISGHTA-LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP 95
Query: 92 ASSTYTLLVKDIQETDAGYYRCQ-------VIIGINNKISAEVDLQVRRPPVISDNSTRS 144
S TL ++ + D+ Y C G +++ DL+ PP ++
Sbjct: 96 EGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSE 155
Query: 145 LVVSEGQPVQLECFAGGHPTP--RISWRRENNAI 176
+S Q L C A G +SW +
Sbjct: 156 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 189
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 32.9 bits (74), Expect = 0.058
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRR--ENNAILPTG 180
EV L ++R NS S G+ ++EC P ++W + +
Sbjct: 11 ECEVQLNIKR------NSKHS--AWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEV 62
Query: 181 GSIYRGS----------ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
G S +L I D G+Y C ++ + V
Sbjct: 63 GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 32.5 bits (73), Expect = 0.073
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 38 IGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G +++C V+Y P V W K + +P+ G L + + +
Sbjct: 28 TGELFKIECPVKYCVHRPNVTWCKHNGTIW---VPLEVGPQLYTSWEE-----NRSVPVF 79
Query: 97 TLLVKDIQETDAGYYRCQV 115
L K I +D G Y C
Sbjct: 80 VLHFKPIHLSDNGSYSCST 98
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 33.6 bits (77), Expect = 0.082
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L CS + + W + + L S D RF I ++ +L
Sbjct: 142 GETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSL 201
Query: 99 LVKDIQETDAGYYRCQV 115
+ D Q D+ Y C
Sbjct: 202 HIADSQPGDSATYFCAA 218
Score = 33.2 bits (76), Expect = 0.095
Identities = 40/221 (18%), Positives = 64/221 (28%), Gaps = 46/221 (20%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DTASST 95
GG V L C+ + + W + D + S G+ Y +
Sbjct: 15 GGKVTLSCNQTNNHNN-MYWYRQDTGHGLRLIHYSYGAG-STEKGDIPDGYKASRPSQEN 72
Query: 96 YTLLVKDIQETDAGYYRCQV----------IIGINNKISAEVDLQVRRPPVISDN----- 140
++L+++ + Y C G K+S + +
Sbjct: 73 FSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQ 132
Query: 141 STRSLVVSEGQPVQLECFA---------------GGHPTPRISWRRENNAILPTGGSIYR 185
S +SL V EG+ L C G P IS ++ +I+
Sbjct: 133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF 192
Query: 186 GS-----ILKIPQITKEDRGTYYCVAENGV------GKGTR 215
L I D TY+C A + GKGT
Sbjct: 193 NKREKKLSLHIADSQPGDSATYFCAAIDTNAYKVIFGKGTH 233
Score = 30.9 bits (70), Expect = 0.62
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 25/89 (28%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRR------------------ENNAILPTGG 181
S R+ V G V L C H + W R +P G
Sbjct: 6 SPRNKVAVTGGKVTLSCNQTNNHNN--MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGY 63
Query: 182 SIYRGSI----LKIPQITKEDRGTYYCVA 206
R S L + T Y+C +
Sbjct: 64 KASRPSQENFSLILELATPSQTSVYFCAS 92
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 32.3 bits (74), Expect = 0.092
Identities = 31/129 (24%), Positives = 40/129 (31%), Gaps = 39/129 (30%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAI-------- 176
E +LQV +P +S+ V+ G+ L C P I W R A
Sbjct: 1 EDELQVIQPE-------KSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQK 53
Query: 177 --LPTGGSIYRGSI--------LKIPQITKEDRGTYYCV---------AENGVGKGTRRN 217
+ + I IT D GTYYCV E G GT
Sbjct: 54 EGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTE-- 111
Query: 218 IAVEVEFAP 226
+ V P
Sbjct: 112 --LSVRAKP 118
Score = 26.5 bits (59), Expect = 8.6
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL------PISTGSSLIIRDSRFAIRYDTA 92
G + L+C++ PV + R + +
Sbjct: 18 GESATLRCAM--TSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELT------KR 69
Query: 93 SST-YTLLVKDIQETDAGYYRCQ 114
++ +++ + +I DAG Y C
Sbjct: 70 NNLDFSISISNITPADAGTYYCV 92
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 31.9 bits (73), Expect = 0.095
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 39 GGTVELKCSVQY-AQDYPVIWMKVDRNKVTEP---LPISTGSSLIIRDSRFAIRYDTASS 94
TV + C + Y + W K + E + + +++ + S
Sbjct: 15 KTTVTMDCVYETQDSSYFLFWYKQTASG--EIVFLIRQDSYKKENATVGHYSLNFQKPKS 72
Query: 95 TYTLLVKDIQETDAGYYRC 113
+ L++ Q D+ Y C
Sbjct: 73 SIGLIITATQIEDSAVYFC 91
Score = 28.8 bits (65), Expect = 1.0
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGG---SIYRGSI-------- 188
+ S+ V E V ++C + + + W ++ +G I + S
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQT----ASGEIVFLIRQDSYKKENATVG 61
Query: 189 --------------LKIPQITKEDRGTYYCVAENGV---------GKGTR 215
L I ED Y+C G GT
Sbjct: 62 HYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTL 111
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 33.4 bits (76), Expect = 0.096
Identities = 37/241 (15%), Positives = 63/241 (26%), Gaps = 68/241 (28%)
Query: 143 RSLVVSEGQPVQLECFAG-------------GHPTPRISWRRENNAILPTGGSI-YRGS- 187
+ L EGQ V L C G I + + N + Y S
Sbjct: 11 KYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR 70
Query: 188 ------ILKIPQITKEDRGTYYCVAENG------VGKGTRRNIAVEVE--FAPVITVPKP 233
L + K Y C + + G GTR + +++ F P + V +P
Sbjct: 71 EKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP 130
Query: 234 RLGQALQYDM-DLECHVEAYPPPA--IVWIKED--------------TQQVLTNNQHYSI 276
+ L C + P + W +Q N+ YS+
Sbjct: 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL 190
Query: 277 SHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVCPPQT 332
S + + + + + C+ + P T
Sbjct: 191 S-------------SRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRAKPVT 232
Query: 333 Q 333
Q
Sbjct: 233 Q 233
Score = 33.1 bits (75), Expect = 0.12
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 15/156 (9%)
Query: 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD--- 90
+ G V L C Q + W + D + + + + A Y
Sbjct: 13 LFRKEGQNVTLSCE-QNLNHDAMYWYRQDPGQGLRLI-YYSQIVNDFQKGDIAEGYSVSR 70
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISA--------EVDLQVRRPPVISDNST 142
++ L V Q+ +Y C + + DL+ PP ++
Sbjct: 71 EKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP 130
Query: 143 RSLVVSEGQPVQLECFA-GGHPTP-RISWRRENNAI 176
+S Q L C A G +P +SW +
Sbjct: 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 32.7 bits (74), Expect = 0.11
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G L+C+ V W + + + + +S + R +D+ TL
Sbjct: 18 GTGSALRCNFTTTMRA-VQWFRKNSRG--SLINLFYLASGTKENGRLKSAFDSKERYSTL 74
Query: 99 LVKDIQETDAGYYRCQVIIGINNKI 123
++D Q D+G Y C NK+
Sbjct: 75 HIRDAQLEDSGTYFCAAEASNTNKV 99
Score = 32.0 bits (72), Expect = 0.21
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 17/112 (15%)
Query: 143 RSLVVSEGQPVQLEC--------------FAGGHPTPRI---SWRRENNAILPTGGSIYR 185
+L + EG L C + G S +EN + S R
Sbjct: 11 SALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKER 70
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
S L I ED GTY+C AE ++ P I P P + Q
Sbjct: 71 YSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAVYQ 122
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 33.3 bits (76), Expect = 0.12
Identities = 34/237 (14%), Positives = 66/237 (27%), Gaps = 52/237 (21%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENN--------AILPTGGSIYRGSI------ 188
++ G V++EC + + W R+ + Y +
Sbjct: 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 91
Query: 189 ----------LKIPQITKEDRGTYYCVAENGV---------GKGTRRNIAVEVE--FAPV 227
L + ED Y C A + G GTR + +++ F P
Sbjct: 92 INHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPE 151
Query: 228 ITVPKPRLGQALQYDM-DLECHVEAYPPPAI--VWI---KEDTQQVLTNNQHYSISHFAT 281
+ V +P + L C + P + W KE V T+ Q
Sbjct: 152 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALN 211
Query: 282 ADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
++ ++ + + + + + C+ + P TQ
Sbjct: 212 DSRYSLSS--RLRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRAKPVTQI 261
Score = 28.7 bits (64), Expect = 3.1
Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 24/192 (12%)
Query: 8 FGFVLFFLINLTTAQRTPTISYISQEQ-----IKDIGGTVELKCSVQYAQDYPVIWMKVD 62
F V F + + Q I G +V+++C Q + W +
Sbjct: 3 FARVHFISALHGSGGGSGGGGGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQF 62
Query: 63 RNKVTEPLP-ISTGSSLIIRDS----RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII 117
+ + + GS +F I + + TL V D+ +Y C
Sbjct: 63 PKQSLMLMATSNEGSKATYEQGVEKDKFLIN-HASLTLSTLTVTSAHPEDSSFYICSARD 121
Query: 118 GINNKISAEVDLQVRRPPVISDNSTR-----------SLVVSEGQPVQLECFAGGH-PTP 165
+ + + R V D +S Q L C A G P
Sbjct: 122 LTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181
Query: 166 -RISWRRENNAI 176
+SW +
Sbjct: 182 VELSWWVNGKEV 193
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 32.9 bits (75), Expect = 0.13
Identities = 31/245 (12%), Positives = 59/245 (24%), Gaps = 72/245 (29%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENN--------AILPTGGSIYRGSI------ 188
++ G V++EC + + W R+ + Y +
Sbjct: 9 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 68
Query: 189 ----------LKIPQITKEDRGTYYCVAEN---------GVGKGTRRNIAVEVEFAPVIT 229
L + ED Y C A G G ++ F P +
Sbjct: 69 INHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVA 128
Query: 230 VPKPRLGQALQYDM-DLECHVEAYPPPAI--VWIKED--------------TQQVLTNNQ 272
V +P + L C + P + W +Q N+
Sbjct: 129 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 188
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGS----YICRAANKLGTSEKTVELFESIIPVC 328
Y++S + + + + + C+ +
Sbjct: 189 RYALSSR-------------LRVSATFWQNPRNHFRCQVQFYGLSENDEWT-----QDRA 230
Query: 329 PPQTQ 333
P TQ
Sbjct: 231 KPVTQ 235
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 31.1 bits (71), Expect = 0.18
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 39 GGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G ++ +KC ++ W + E IS G R+ D S ++
Sbjct: 15 GESLTIKCVLKDHSCGLSSTTWYRTQLGSTNE-KTISIGG-------RYDETVDKGSKSF 66
Query: 97 TLLVKDIQETDAGYYRCQV 115
+L + D++ D+G Y+CQ
Sbjct: 67 SLRISDLRVEDSGTYKCQA 85
Score = 29.2 bits (66), Expect = 0.76
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 139 DNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRR----ENNAILPTGGSIYRGSI---- 188
D + R++ G+ + ++C +W R N + G Y ++
Sbjct: 4 DQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS 63
Query: 189 ----LKIPQITKEDRGTYYCVAENGVGKGTRRN 217
L+I + ED GTY C A+ + +
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQADYSPSCYSYPS 96
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 31.6 bits (72), Expect = 0.18
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G TV++ C + A K L + R S TL
Sbjct: 33 GFTVKMHCYMNSASGNVSWLWK--------QEMDENPQQLKLEKGRMEES--QNESLATL 82
Query: 99 LVKDIQETDAGYYRCQ 114
++ I+ D G Y CQ
Sbjct: 83 TIQGIRFEDNGIYFCQ 98
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 32.0 bits (72), Expect = 0.21
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEP---LPISTGSSLIIRDSRFAIRYDTASS 94
V L C + + W K + E + ++ R++ + ++S
Sbjct: 18 KEDVTLDCVYETRDTTYYLFWYKQPPSG--ELVFLIRRNSFDEQNEISGRYSWNFQKSTS 75
Query: 95 TYTLLVKDIQETDAGYYRCQVIIGINN 121
++ + Q D+ Y C + N
Sbjct: 76 SFNFTITASQVVDSAVYFCALSGFYNT 102
Score = 28.1 bits (62), Expect = 3.6
Identities = 21/123 (17%), Positives = 29/123 (23%), Gaps = 35/123 (28%)
Query: 144 SLVVSEGQPVQLEC----------------FAGGHPTPRISWRRENNAILPTGG------ 181
+ V E + V L+C G I + +G
Sbjct: 12 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQ 71
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGV-------GKGTRRNIAVEVEFAPVITVPKPR 234
I D Y+C G GTR + P I P P
Sbjct: 72 KSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQV------FPNIQNPDPA 125
Query: 235 LGQ 237
+ Q
Sbjct: 126 VYQ 128
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 32.2 bits (73), Expect = 0.21
Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 35/187 (18%)
Query: 157 CFAGGHPTPRISWRRENNAILPT--------GGSIYRG-SILKIPQITKEDRGTYYCVAE 207
+ P + +W + + S YR S+L + + Y C
Sbjct: 50 DVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVS 109
Query: 208 NG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIV-WIKE 262
N + A P + P + + + L C V+ YP V W
Sbjct: 110 NKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN 169
Query: 263 D--------TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA---ANKL 311
T VL ++ + + + + V +Q + C A
Sbjct: 170 GQPENNYKATPPVLDSDGSFFLY----------SKLTVDKSRWQQGNVFSCSVMHEALHN 219
Query: 312 GTSEKTV 318
++K++
Sbjct: 220 HYTQKSL 226
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 30.8 bits (70), Expect = 0.22
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK--------IPQIT 195
SL++S+G V + C + + R G + S I +
Sbjct: 17 SLMISQGTFVTVVC-SYSDKHDLYNMVRLEKD----GSTFMEKSTEPYKTEDEFEIGPVN 71
Query: 196 KEDRGTYYCVAENGVG 211
+ G Y C+ G+
Sbjct: 72 ETITGHYSCIYSKGIT 87
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 31.8 bits (73), Expect = 0.24
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 33/104 (31%)
Query: 144 SLVVSEGQPVQLECFAGGHP--TPRISWRR--ENNA------ILPTGGSIYRGSI----- 188
S+ + Q+ C + I W R N +L T I+
Sbjct: 10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKME 69
Query: 189 -----------LKIPQITKEDRGTYYCVAENGV-------GKGT 214
L I + +ED YYC G +GT
Sbjct: 70 ASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGT 113
Score = 28.7 bits (65), Expect = 2.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 72 ISTGSSLIIRDS---RFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114
+ + I D + + ++ST L + ++E D Y C
Sbjct: 52 VLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCS 97
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.8 bits (72), Expect = 0.25
Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 45/214 (21%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLEC----FAGGHPTPRISWRRENNAILPT---------G 180
PP I D V+ ++ C + P +ISW N +
Sbjct: 16 PPNIKD------VLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYN 69
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
+I S L I + C N + + AP + + P Q
Sbjct: 70 STIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQ 129
Query: 238 ALQYDMDLECHVEA-YPPPAIV-WIKED--------TQQVLTNNQHYSISHFATADEFTD 287
+ D+ L C V P V W T VL ++ Y I
Sbjct: 130 LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYS--------- 180
Query: 288 TTIRVITIEKRQYGSYICRA---ANKLGTSEKTV 318
+ + T + + S+ C K +KT+
Sbjct: 181 -KLNMKTSKWEKTDSFSCNVRHEGLKNYYLKKTI 213
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 30.1 bits (68), Expect = 0.32
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK--- 190
P IS V+ G V C G RE+ + + + S +
Sbjct: 9 RPSISAEP--GTVIPLGSHVTFVC-RGPVGVQTFRLERESRSTYNDTEDVSQASPSESEA 65
Query: 191 ---IPQITKEDRGTYYC 204
I +++ + G Y C
Sbjct: 66 RFRIDSVSEGNAGPYRC 82
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 30.7 bits (70), Expect = 0.36
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST--- 95
G + L+C++ PV + R I R +
Sbjct: 23 GESATLRCAM--TSLIPVGPIMWFRGAGAGRELIYNQKEG--HFPRVTTVSELTKRNNLD 78
Query: 96 YTLLVKDIQETDAGYYRCQ 114
+++ + +I DAG Y C
Sbjct: 79 FSISISNITPADAGTYYCV 97
Score = 29.1 bits (66), Expect = 1.1
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNA-----ILP 178
+ +LQV +P +S+ V+ G+ L C P I W R A
Sbjct: 5 SSGELQVIQPE-------KSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQ 57
Query: 179 TGGSIYRGSI-------------LKIPQITKEDRGTYYCV 205
G R + + I IT D GTYYCV
Sbjct: 58 KEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCV 97
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.4 bits (69), Expect = 0.38
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISW--RRENNA--ILPTGGSIYRGSI------LKIP 192
R V+ C+ + ++W +R + L + + L I
Sbjct: 25 RFAAKKRSSMVKFHCYTNH--SGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQ 82
Query: 193 QITKEDRGTYYC 204
I ED G Y+C
Sbjct: 83 NIQYEDNGIYFC 94
Score = 29.6 bits (67), Expect = 0.67
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST-YT 97
V+ C + W R + L+ + R T + + YT
Sbjct: 32 SSMVKFHCYTN--HSGALTWF---RKR-----GSQQPQELVSEEGRIV---QTQNGSVYT 78
Query: 98 LLVKDIQETDAGYYRCQ 114
L +++IQ D G Y C+
Sbjct: 79 LTIQNIQYEDNGIYFCK 95
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 30.3 bits (69), Expect = 0.39
Identities = 26/115 (22%), Positives = 31/115 (26%), Gaps = 43/115 (37%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGG---SIYRGSI----------- 188
V+ G V L C + + P + W R P Y
Sbjct: 9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRI----RPDYSFQFVFYGDDSRSEGADFTQGR 64
Query: 189 -------------LKIPQITKEDRGTYYCVAENGV-------GKGTRRNIAVEVE 223
L I + ED TYYC GKGTR V VE
Sbjct: 65 FSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGTR----VTVE 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.46
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 237 QALQYDMDLECHVEAYPP---PAIVWIK 261
QAL+ L+ ++ Y PA+ IK
Sbjct: 20 QALK---KLQASLKLYADDSAPALA-IK 43
Score = 30.3 bits (67), Expect = 0.65
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDY-PVIWMK 60
++ +K + +++L YA D P + +K
Sbjct: 19 KQALKKLQASLKL-----YADDSAPALAIK 43
Score = 27.2 bits (59), Expect = 6.7
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 24/53 (45%)
Query: 296 EKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVI 348
EK+ KL + +++L+ + P+ L ++ A +
Sbjct: 18 EKQAL--------KKL---QASLKLYA-------DDSAPA--LAIK----ATM 46
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 31.4 bits (71), Expect = 0.49
Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 24/172 (13%)
Query: 189 LKIPQITKEDRGTYYCVAENGV---GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
+++ + ED Y+C + G+GT ++ P + P L
Sbjct: 81 VELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAAL 140
Query: 246 ECHVEAYPPPAIV--WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
C V+ Y P + W LT+ H + ++ ++ +++ + +Y
Sbjct: 141 GCLVKDYFPEPVTVSW----NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTY 196
Query: 304 ICRAANKLGTSEKTVELFESII---------------PVCPPQTQPSELLPL 340
IC +K ++ ++ Q + ++ L
Sbjct: 197 ICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTL 248
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 29.9 bits (68), Expect = 0.51
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 70 LPISTGSSLII-RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI 123
L IS S D RF I ++ +L + D Q D+ Y C
Sbjct: 44 LLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASANSGTYQ 98
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 29.7 bits (67), Expect = 0.59
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK--------IPQIT 195
SL++S+G V + C + + R G + S I +
Sbjct: 17 SLMISQGTFVTVVC-SYSDKHDLYNMVRLEKD----GSTFMEKSTEPYKTEDEFEIGPVN 71
Query: 196 KEDRGTYYCVAENGVG 211
+ G Y C+ G+
Sbjct: 72 ETITGHYSCIYSKGIT 87
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1}
Length = 395
Score = 31.0 bits (71), Expect = 0.69
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 27/82 (32%)
Query: 230 VPKPRLGQALQYDMDLECH-------VEAYPPPAIVWIKEDT----------------QQ 266
L + +D+ + + + V + DT ++
Sbjct: 90 WDYSDLKLFIDHDIVITIPSLAWLQNLPDFEGTLKVSLAIDTGMTRIGFDKADEISAAKK 149
Query: 267 VLTNNQHYSI----SHFATADE 284
++ N + +HFATADE
Sbjct: 150 IIDKNPQLDLFSVYTHFATADE 171
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 29.1 bits (65), Expect = 0.94
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ +LL+++I + DAG+Y VI A +V
Sbjct: 66 EIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 28.8 bits (65), Expect = 1.2
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 38/106 (35%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGS- 182
+L+V +P +S+ V+ G L C P I W R G S
Sbjct: 4 GSKELKVTQPE-------KSVSVAAGDSTVLNCTLTSLLPVGPIKWYRG------VGQSR 50
Query: 183 --IYRGSILKIPQITK---------------------EDRGTYYCV 205
IY + P++T ED GTYYCV
Sbjct: 51 LLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCV 96
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 28.8 bits (65), Expect = 1.3
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 39 GGTVELKCSV---QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIRYDTA 92
G T+ +KC +YA + W ++ K L ++ + +F +++D +
Sbjct: 14 GQTLTVKCPFNIMKYA-NSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS 72
Query: 93 SSTYTLLVKDIQETDAGYYRC 113
+ + + D+Q TD+G YRC
Sbjct: 73 EAMLQVQMTDLQVTDSGLYRC 93
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 29.6 bits (67), Expect = 1.4
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 32/115 (27%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPR--ISWRRE-----------NNAILPTG------G 181
S+ Q L C + +W ++ N P+G
Sbjct: 145 QPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSA 204
Query: 182 SIYRGSI----LKIPQITKEDRGTYYCVAENG------VGKGTRRNIAVEVEFAP 226
S S L I + ED YYC + G GT+ + + + AP
Sbjct: 205 S---RSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAP 256
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.9 bits (67), Expect = 1.4
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 195 TKEDRGTYYCVAENGV---------GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
ED YYC + G+GT ++ +P + Q ++ +
Sbjct: 88 RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQP-DGNVVI 146
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEKRQYGSYI 304
C V+ + P + + +++ S A+ D +T + + + + S
Sbjct: 147 ACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVT 206
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
C + S + V + + P + + P + + +P
Sbjct: 207 CHVKHYTNPS-QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPAL 256
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 29.6 bits (67), Expect = 1.4
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 26/108 (24%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRE-----------NNAILPTGG-SIYRGS- 187
S +L V+ G V L C A + + W R+ + G S + GS
Sbjct: 143 SPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSG 202
Query: 188 -----ILKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAP 226
L I + ED G Y+C N G GT+ +E++ A
Sbjct: 203 SGTEFTLSINSVETEDFGIYFCQQSNSWPHTFGTGTK----LELKRAD 246
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 29.7 bits (68), Expect = 1.5
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 27/82 (32%)
Query: 230 VPKPRLGQALQYDMDLECH--------VEAYPPPAIVWIKEDT---------------QQ 266
P+ A+ ++DL +E V IK D+
Sbjct: 83 TPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVSIKIDSGLHRSGVDEQEWEGVFS 142
Query: 267 VLTNNQHYSI----SHFATADE 284
L H + +H A ADE
Sbjct: 143 ALAAAPHIEVTGMFTHLACADE 164
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure
for C-terminal domain, internal/external aldimine forms,
isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas
aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Length = 357
Score = 29.3 bits (67), Expect = 1.8
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 28/85 (32%)
Query: 235 LGQALQYDMDLECH-------VEAYPP--PAIVWIKEDT---------------QQVLTN 270
L + +D H +E P VW+K D+ + L
Sbjct: 87 LELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKMDSGMHRVGFFPEDFRAAHERLRA 146
Query: 271 NQHYSI----SHFATADEFTDTTIR 291
+ + SHF+ ADE
Sbjct: 147 SGKVAKIVMMSHFSRADELDCPRTE 171
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 28.4 bits (64), Expect = 1.9
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLII-RDSRFAIRYDTASSTY 96
G CS ++ + + W ++ + T+ L +D RF + +
Sbjct: 16 GDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDF 75
Query: 97 TLLVKDIQETDAGYYRCQVI 116
+ V + D+G Y C I
Sbjct: 76 HMSVVRARRNDSGTYLCGAI 95
Score = 27.7 bits (62), Expect = 3.9
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 197 EDRGTYYCVAENG-----VGKGTRRNIAVEVEFAPVITVP 231
D GTY C A + + + R + V A V T
Sbjct: 85 NDSGTYLCGAISLAPKLQIKESLRAELRVTERRAEVPTAH 124
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 28.3 bits (64), Expect = 1.9
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 26/101 (25%)
Query: 141 STRSLVVSEGQPVQLECFAG-GHPT------------PRI-----SWRRENNAILPTGGS 182
S R+ V G+ V L C + R+ R +P G
Sbjct: 11 SPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYK 70
Query: 183 IYRGS----ILKIPQITKEDRGTYYCVAENGV----GKGTR 215
R S L + T Y+C + G G GTR
Sbjct: 71 ASRPSQENFSLILELATPSQTSVYFCASGGGGTLYFGAGTR 111
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel,
glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPVI--SDNSTRSLVVSEGQPVQLECFAGGHP 163
TD G Q + K++ D + P V+ + + SEG V F GG
Sbjct: 739 TDQGKTNEQTVAVSGGKVTLTADAET--PYVVYKGEAKQIQVNWSEGMHVVDAGFNGGSN 796
Query: 164 TPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218
T +W + G G + ++T G Y GV + +
Sbjct: 797 TLTDNWTVSGSGKAEVEGDNNAMLRLTGKVDVSQRLTDLKAGQKY-ALYVGVDNRSTGDA 855
Query: 219 AVEV 222
+V V
Sbjct: 856 SVTV 859
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel,
RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP:
c.6.3.2 PDB: 2czv_A*
Length = 212
Score = 28.8 bits (64), Expect = 2.5
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
+ P + ++D G + +A+ V ++N+A+ P++ L++ M
Sbjct: 99 AIISPWVNRKDPGIDHVLAKLMV----KKNVALGFSLRPLLYSNPYERANLLRFMMKAWK 154
Query: 248 HVEAYPPPAIV 258
VE Y +
Sbjct: 155 LVEKYKVRRFL 165
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.7 bits (63), Expect = 2.6
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 147 VSEGQPVQLEC-FAGGHPTPRISWRRENNAIL-------PTGGSIYRGSILKIPQITKED 198
V+ GQ +C G W + + T + S + TK D
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS-FNVVNTTKRD 234
Query: 199 RGTYYCVAENGVGKG 213
G Y C+ G G
Sbjct: 235 AGKYRCMIRTEGGVG 249
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 28.8 bits (65), Expect = 2.7
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 37/111 (33%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPR--ISWRREN--------NAILPTGGSIY------ 184
S + + +LEC G + W RE +I G
Sbjct: 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPS 66
Query: 185 -RGSI----------LKIPQITKEDRGTYYCVAENGV----------GKGT 214
+ + L I + K+D TYYC G GT
Sbjct: 67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGT 117
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 27.4 bits (60), Expect = 2.8
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK---IPQIT 195
+ ++EG+ + + C P ++ ++ L G K I T
Sbjct: 9 SEIPEIIHMTEGRELVIPCR-VTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNAT 67
Query: 196 KEDRGTYYCVAENG 209
++ G C A
Sbjct: 68 YKEIGLLTCEATVN 81
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 28.5 bits (64), Expect = 3.0
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 189 LKIPQITKEDRGTYYCVAENGV------GKGTRRNIAVEVEFAPVITVPKPRLGQALQYD 242
L I + ED YYC + G GT+ + + + AP +T+ P +
Sbjct: 93 LAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 152
Query: 243 MDLECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTD---TTIRVITIEK 297
L C + + P A + W + + + ++ +++
Sbjct: 153 ATLVCLISDFFPGAVTVAWKADGAPV--KAGVETTKP-----SKQSNNKYAASSYLSLTP 205
Query: 298 RQY---GSYICRAANKLGTSEKTV 318
Q+ SY C+ ++ T EKTV
Sbjct: 206 EQWKSHRSYSCQVTHEGSTVEKTV 229
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 28.4 bits (64), Expect = 3.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 189 LKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEVEFAP 226
L I + ED +Y+C + G GT+ +E++ AP
Sbjct: 214 LTISSMEAEDAASYFCHQWSSFPFTFGSGTK----LEIKRAP 251
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 27.6 bits (61), Expect = 4.0
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
+ + ++ ED GTY ++G G + + +
Sbjct: 98 MFMEKLQDEDEGTYTFQIQDGKATGHSTLVLIGDVY 133
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 28.1 bits (63), Expect = 4.1
Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 52/166 (31%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQ---------------VIIGINNKISAEVDLQVRRP 134
+ + +TL++ ++ D Y CQ I G + EV LQ
Sbjct: 69 TGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQ---- 124
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPR--ISWRREN--------NAILPTGGSIY 184
S LV G V+L C A G + W ++ I P G+
Sbjct: 125 -----QSGAELV-EPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSK 178
Query: 185 -------RGSI----------LKIPQITKEDRGTYYCVAENGVGKG 213
+ +I L++ +T ED YYC
Sbjct: 179 YVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSD 224
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA
complex, signaling, transcription, notch, activator,
alternative splicing; HET: XYL; 2.00A {Mus musculus}
PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Length = 422
Score = 28.5 bits (63), Expect = 4.1
Identities = 14/80 (17%), Positives = 27/80 (33%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKI 191
+ + R + GQ V+L C G PR+ R+ + + K
Sbjct: 201 DDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKC 260
Query: 192 PQITKEDRGTYYCVAENGVG 211
K+ Y C+++ +
Sbjct: 261 AFYLKDTERMYLCLSQERII 280
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 4.2
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA 206
+++ + E P WR E L + + + + K+D +
Sbjct: 74 IAQADRLTQE------PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 207 ENGVGKGTRRNIAVEVEF 224
V K N + F
Sbjct: 128 SEQVEKNKINNRIADKAF 145
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 28.3 bits (62), Expect = 4.5
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 17/141 (12%)
Query: 138 SDNSTRSLVVSEG----QPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSI 188
S + + EG +L+C + SW N T ++Y I
Sbjct: 83 SILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKI 142
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH 248
+ I +E + V + +V++ K G+ +
Sbjct: 143 HQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMV-------KDNAGKIKPSFNIVPLT 195
Query: 249 VEAYP-PPAIVWIKEDTQQVL 268
P PP I + +
Sbjct: 196 SRVKPDPPHIKNLSFHNDDLY 216
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 28.0 bits (63), Expect = 4.7
Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 50/212 (23%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRE-----------NNAILPTG------GSIYRG 186
S V+ G+ V++ C P W ++ + P+G GS
Sbjct: 8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGS---T 64
Query: 187 S----ILKIPQITKEDRGTYYCVAENGV------GKGTRRNIAVEVEFAPVITVPKPRLG 236
S L I ED YYC++ G G GT+ + + +P +TV P
Sbjct: 65 SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPE 124
Query: 237 QALQYDMDLECHVEAYPPPA--IVWIKED---TQQVLTNNQ-----HYSISHFATADEFT 286
+ L C V + P + + W V T +Y S
Sbjct: 125 ELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTS--------- 175
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ + + + + + C+ ++ T EK++
Sbjct: 176 -SYLSLTADQWKSHNRVSCQVTHEGETVEKSL 206
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 28.4 bits (63), Expect = 4.9
Identities = 21/185 (11%), Positives = 39/185 (21%), Gaps = 27/185 (14%)
Query: 38 IGGTVELKCSV--QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
+ C V +D + W + G + + S
Sbjct: 311 LRDKATFTCFVVGSDLKDAHLTWE---VAGKVPTGGVEEGLLERHSNGSQ-----SQHSR 362
Query: 96 YTLLVKDIQETDAGYYRCQVI-----IGINNKISAEVDLQVRRPPVI------SDNSTRS 144
TL C + + + + +
Sbjct: 363 LTLPRSLWNAGT--SVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASW 420
Query: 145 L--VVSE--GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
L VS + L + P + + S+L++P
Sbjct: 421 LLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPA 480
Query: 201 TYYCV 205
TY CV
Sbjct: 481 TYTCV 485
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin
resistance, center for STR genomics of infectious
diseases (csgid); HET: MSE; 2.02A {Enterococcus
faecalis}
Length = 374
Score = 28.2 bits (64), Expect = 4.9
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 25/80 (31%)
Query: 230 VPKPRLGQALQYDMDLECH-------VEAYPPPAIVWIKEDT------------QQVLTN 270
R + +Y++ + IK DT ++L
Sbjct: 87 TSPSRAKELCKYELTQTLIDYRYSLLLNKQGYDIKAHIKIDTGMHRLGFSTEDKDKILAA 146
Query: 271 NQHYSI------SHFATADE 284
I +H AD
Sbjct: 147 FSLKHIKVAGIFTHLCAADS 166
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 27.6 bits (62), Expect = 6.4
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRE-----------NNAILPTG------GSI 183
S +L +S G+ L C A ++W ++ + + TG GS
Sbjct: 141 SPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG 200
Query: 184 YRGSI-LKIPQITKEDRGTYYCVAENGV----GKGTRRNIAVEV 222
L I ++ ED YYC + G+GT+ VEV
Sbjct: 201 SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTK----VEV 240
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 26.5 bits (58), Expect = 6.6
Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 16/91 (17%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR--------ENNAILPTGGSIYR 185
+ V +G+ W E + G YR
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYR 64
Query: 186 GS------ILKIPQITKEDRGTYYCVAENGV 210
L + + +D G + GV
Sbjct: 65 IEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM
barrel, structural genomics, NEW YORK SGX center for
structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Length = 380
Score = 27.5 bits (62), Expect = 7.4
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 30/85 (35%)
Query: 230 VPKPRLGQALQYDMDLECH----VEAY-----PPPAIVWIKEDT---------------- 264
+ A +Y +++ V + DT
Sbjct: 89 IDVKYAPIASKYHFLTTVSSLDWLKSADKILGKEKLSVNLAVDTGMNRIGVRSKKDLKDE 148
Query: 265 -QQVLTNNQHYSI----SHFATADE 284
+ + ++ H+S +HFA++D
Sbjct: 149 IEFLQEHSDHFSYDGIFTHFASSDN 173
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 27.8 bits (61), Expect = 7.4
Identities = 12/89 (13%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 245 LECHV--EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ C V E P + ++V Q S F + G+
Sbjct: 250 MHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGA 309
Query: 303 YICRAANKLGTSEKTVELFESIIPVCPPQ 331
C + + P P
Sbjct: 310 TSCECEEGFFRAPQDPASMPCTRPPSAPH 338
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 26.7 bits (58), Expect = 8.6
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+ F + + T ++++ Y C++
Sbjct: 65 KTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKI 98
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP;
2.15A {Staphylococcus aureus} PDB: 3oo2_A
Length = 382
Score = 27.1 bits (61), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 277 SHFATADEFTDTT 289
+HFA ADE D T
Sbjct: 167 THFACADEPGDMT 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,800,567
Number of extensions: 345866
Number of successful extensions: 2890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 791
Length of query: 386
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 291
Effective length of database: 4,049,298
Effective search space: 1178345718
Effective search space used: 1178345718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)