BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8827
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 101 bits (251), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/68 (63%), Positives = 58/68 (85%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+ KKRKMYE I+++
Sbjct: 102 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 161
Query: 64 PMLKSLQV 71
P LKSL+V
Sbjct: 162 PFLKSLEV 169
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGELAL+ N PRAA+ A T AMD + F++++
Sbjct: 237 FGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 272
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+ KKRKMYE I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272
Query: 64 PMLKSLQV 71
P LKSL+V
Sbjct: 273 PFLKSLEV 280
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGELAL+ N PRAA+ A T AMD + F++++
Sbjct: 348 FGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 99.8 bits (247), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+ KKRKMYE I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272
Query: 64 PMLKSLQV 71
P LKSL+V
Sbjct: 273 PFLKSLEV 280
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGELAL+ N PRAA+ A T AMD + F++++
Sbjct: 348 FGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 99.4 bits (246), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+ KKRKM+E I++V
Sbjct: 106 YDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 165
Query: 64 PMLKSLQV 71
P+ KSL++
Sbjct: 166 PLFKSLEM 173
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGELAL+ N PRAA+ MD + F++++
Sbjct: 242 FGELALVTNKPRAASAYGVGDVKCLVMDVQAFERLL 277
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE 57
Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+ KKRKMYE
Sbjct: 106 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 46/53 (86%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+ KKRKMY
Sbjct: 112 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 164
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 9 SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKS 68
SFGELAL+YN PRAAT+ ATS LWA+DR TF++I+L S+FKKR MY+ L+ ++P+LKS
Sbjct: 76 SFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKS 135
Query: 69 L 69
L
Sbjct: 136 L 136
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
++ +D FGE+ALL ++PR AT+ AT + + + F++++
Sbjct: 187 INKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V +L+
Sbjct: 198 GSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 257
Query: 68 SLQ 70
SL+
Sbjct: 258 SLE 260
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGE+ALL N PRAAT+ A +DR F++++
Sbjct: 324 FGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V +L+
Sbjct: 103 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 162
Query: 68 SL 69
SL
Sbjct: 163 SL 164
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGE+ALL N PRAAT+ A +DR F++++
Sbjct: 229 FGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 264
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V +L+
Sbjct: 105 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 164
Query: 68 SL 69
SL
Sbjct: 165 SL 166
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGE+ALL N PRAAT+ A +DR F++++
Sbjct: 231 FGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 266
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V +L+
Sbjct: 107 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 166
Query: 68 SL 69
SL
Sbjct: 167 SL 168
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FGE+ALL N P+AAT+ A +DR F++++
Sbjct: 233 FGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVL 268
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMY
Sbjct: 106 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 8 GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM 55
GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKM
Sbjct: 113 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 160
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSL 69
FGELA+LYN R AT+K LWA+DR+ F+ I++++ K Y + + +VP +SL
Sbjct: 109 FGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSL 168
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
FGELA+LYN R AT+K LWA+DR+ F+ I++++ K Y
Sbjct: 93 FGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 139
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58
FGE+AL+ PR+AT+ A +T SL ++ F Q++ S+ + +++ K
Sbjct: 79 FGEMALISGEPRSATVSAATTVSLLSLHSADF-QMLCSSSPEIAEIFRK 126
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58
FGE+AL+ PR+AT+ A +T SL ++ F Q++ S+ + +++ K
Sbjct: 79 FGEMALISGEPRSATVSAATTVSLLSLHSADF-QMLCSSSPEIAEIFRK 126
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFK----------QIVLKSAFKKR 53
FGE+AL+ PR+AT+ A +T SL ++ F+ +I K+A ++R
Sbjct: 81 FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 134
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58
FGE+AL+ PR+AT+ A +T SL ++ F Q++ S+ + +++ K
Sbjct: 83 FGEMALISGEPRSATVSAATTVSLLSLHSADF-QMLCSSSPEIAEIFRK 130
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48
FGE+AL+ PR+AT+ A +T SL ++ F+ + S
Sbjct: 296 FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 334
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFK----------QIVLKSAFKKR 53
FGE+AL+ P +AT+ A +T SL ++ F+ +I K+A ++R
Sbjct: 81 FGEMALISGEPESATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 134
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58
FGE+AL+ P +AT+ A +T SL ++ F Q++ S+ + +++ K
Sbjct: 81 FGEMALISGEPWSATVSAATTVSLLSLHSADF-QMLCSSSPEIAEIFRK 128
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 6 DKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
D FGE+ LL R A++K + +L+++ + F Q++
Sbjct: 138 DGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 11 GELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
GE+ALL + PR+AT+ + W R F +V
Sbjct: 88 GEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV 122
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 11 GELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
GE+ALL + PR+AT+ + W R F V
Sbjct: 88 GEIALLRDSPRSATVTTIEPLTGWTGGRGAFATXV 122
>pdb|1W36|C Chain C, Recbcd:dna Complex
pdb|1W36|F Chain F, Recbcd:dna Complex
pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1122
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 33 LWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPML 66
+W M + +I +SAF K+ M KL+ +P L
Sbjct: 69 IWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL 102
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 35 AMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVM 72
A D+ T K + +K K +M+E LID +L+ + ++
Sbjct: 45 AYDKNTEKNVAIK---KVNRMFEDLIDCKRILREITIL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,006,055
Number of Sequences: 62578
Number of extensions: 52868
Number of successful extensions: 182
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 37
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)