Query psy8827
Match_columns 82
No_of_seqs 187 out of 1123
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:12:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shr_A CGMP-dependent protein 99.6 2.8E-15 9.6E-20 98.5 7.9 76 2-77 101-176 (299)
2 3of1_A CAMP-dependent protein 99.6 3.2E-15 1.1E-19 95.1 6.5 77 1-77 68-144 (246)
3 4din_B CAMP-dependent protein 99.6 6.7E-15 2.3E-19 100.6 8.1 76 2-77 192-267 (381)
4 2qcs_B CAMP-dependent protein 99.6 2.3E-14 7.9E-19 93.5 10.3 76 2-77 101-176 (291)
5 3tnp_B CAMP-dependent protein 99.5 8.5E-15 2.9E-19 101.3 5.2 76 2-77 211-286 (416)
6 3mdp_A Cyclic nucleotide-bindi 99.4 1.6E-12 5.6E-17 76.4 6.9 60 2-61 76-135 (142)
7 3idb_B CAMP-dependent protein 99.3 6E-13 2E-17 80.5 3.2 56 2-57 104-159 (161)
8 3ocp_A PRKG1 protein; serine/t 99.3 1.1E-12 3.7E-17 77.5 4.2 54 2-55 85-138 (139)
9 2ptm_A Hyperpolarization-activ 99.3 4E-12 1.4E-16 79.2 6.5 61 2-62 134-194 (198)
10 3ukn_A Novel protein similar t 99.3 4.3E-12 1.5E-16 79.8 6.7 62 2-63 137-200 (212)
11 1zyb_A Transcription regulator 99.3 1.5E-11 5E-16 78.3 8.4 80 2-81 87-174 (232)
12 3d0s_A Transcriptional regulat 99.3 3.5E-12 1.2E-16 80.5 5.0 79 2-80 73-158 (227)
13 2gau_A Transcriptional regulat 99.3 6.7E-12 2.3E-16 79.5 6.2 79 2-80 77-162 (232)
14 3fx3_A Cyclic nucleotide-bindi 99.3 8.6E-12 2.9E-16 79.2 6.7 79 2-80 78-163 (237)
15 3pna_A CAMP-dependent protein 99.3 2.9E-12 1E-16 77.0 4.2 54 2-55 100-153 (154)
16 2z69_A DNR protein; beta barre 99.3 1.9E-11 6.6E-16 72.6 7.3 64 2-65 79-143 (154)
17 1vp6_A CNBD, cyclic-nucleotide 99.3 1.7E-11 5.7E-16 71.9 6.9 61 3-63 72-132 (138)
18 2oz6_A Virulence factor regula 99.3 9.9E-12 3.4E-16 77.3 6.2 79 2-80 57-146 (207)
19 4ev0_A Transcription regulator 99.2 6.7E-12 2.3E-16 78.5 4.9 79 2-80 66-151 (216)
20 3ryp_A Catabolite gene activat 99.2 1.4E-11 4.8E-16 76.7 5.8 79 2-80 63-149 (210)
21 2pqq_A Putative transcriptiona 99.2 1.6E-11 5.4E-16 72.5 5.4 55 2-56 72-126 (149)
22 3gyd_A CNMP-BD protein, cyclic 99.2 1.3E-11 4.5E-16 76.7 5.2 55 2-56 106-160 (187)
23 3iwz_A CAP-like, catabolite ac 99.2 3.9E-11 1.3E-15 75.6 7.2 79 2-80 78-169 (230)
24 3bpz_A Potassium/sodium hyperp 99.2 1.3E-11 4.3E-16 77.3 4.9 56 3-58 135-190 (202)
25 1o5l_A Transcriptional regulat 99.2 2.1E-11 7.3E-16 76.7 5.7 79 2-80 66-152 (213)
26 4din_B CAMP-dependent protein 99.2 1.6E-11 5.6E-16 83.8 5.6 52 2-53 316-367 (381)
27 3kcc_A Catabolite gene activat 99.2 2.3E-11 7.7E-16 78.9 5.9 79 2-80 113-199 (260)
28 4f8a_A Potassium voltage-gated 99.2 3.5E-11 1.2E-15 72.0 6.4 55 2-56 89-145 (160)
29 2qcs_B CAMP-dependent protein 99.2 1.3E-11 4.4E-16 80.4 4.6 52 2-53 225-276 (291)
30 3of1_A CAMP-dependent protein 99.2 1.8E-11 6.1E-16 77.6 4.4 50 2-51 188-237 (246)
31 4f7z_A RAP guanine nucleotide 99.2 2.1E-11 7.1E-16 91.4 5.3 46 2-47 401-447 (999)
32 3dkw_A DNR protein; CRP-FNR, H 99.2 1.1E-11 3.8E-16 78.0 3.2 78 2-79 76-161 (227)
33 3dn7_A Cyclic nucleotide bindi 99.2 1.4E-11 4.9E-16 76.1 3.6 78 2-79 74-159 (194)
34 3b02_A Transcriptional regulat 99.2 1.1E-10 3.6E-15 72.5 7.3 78 2-80 43-121 (195)
35 4f7z_A RAP guanine nucleotide 99.2 1.6E-10 5.5E-15 86.7 9.5 46 2-48 111-156 (999)
36 3shr_A CGMP-dependent protein 99.2 7.9E-12 2.7E-16 82.0 1.9 51 2-52 225-275 (299)
37 3dv8_A Transcriptional regulat 99.1 1.2E-10 4.2E-15 72.9 7.1 79 2-80 70-157 (220)
38 3e97_A Transcriptional regulat 99.1 8.8E-11 3E-15 74.2 6.2 52 2-53 73-124 (231)
39 4ava_A Lysine acetyltransferas 99.1 4.7E-11 1.6E-15 79.4 5.1 56 2-58 79-134 (333)
40 3la7_A Global nitrogen regulat 99.1 1.4E-10 4.8E-15 74.3 7.1 79 2-80 87-174 (243)
41 3tnp_B CAMP-dependent protein 99.1 3.5E-11 1.2E-15 83.2 3.7 52 2-53 340-391 (416)
42 3e6c_C CPRK, cyclic nucleotide 99.1 5.9E-10 2E-14 71.4 7.2 76 2-80 76-158 (250)
43 1wgp_A Probable cyclic nucleot 99.0 2.3E-10 7.9E-15 67.0 4.0 48 3-50 75-131 (137)
44 1o7f_A CAMP-dependent RAP1 gua 99.0 2.1E-10 7.2E-15 79.3 3.8 52 2-53 401-453 (469)
45 1o7f_A CAMP-dependent RAP1 gua 99.0 8.7E-11 3E-15 81.2 1.4 49 2-51 111-159 (469)
46 2fmy_A COOA, carbon monoxide o 98.9 1.1E-09 3.8E-14 68.7 4.7 72 2-80 70-148 (220)
47 2d93_A RAP guanine nucleotide 98.9 5.8E-10 2E-14 65.3 2.6 46 3-48 80-126 (134)
48 2bgc_A PRFA; bacterial infecti 98.9 2.5E-09 8.7E-14 68.1 5.8 78 2-80 62-149 (238)
49 1ft9_A Carbon monoxide oxidati 98.8 3.7E-09 1.3E-13 66.5 5.0 72 2-80 66-144 (222)
50 3beh_A MLL3241 protein; transm 98.8 4.6E-10 1.6E-14 75.8 0.0 55 3-57 289-343 (355)
51 2zcw_A TTHA1359, transcription 98.8 4.5E-09 1.6E-13 65.3 4.3 77 2-80 51-128 (202)
52 3cf6_E RAP guanine nucleotide 98.6 2.2E-08 7.6E-13 73.4 2.9 49 2-50 96-145 (694)
53 3idb_B CAMP-dependent protein 92.1 0.019 6.5E-07 33.7 -0.7 56 21-77 2-57 (161)
54 3l0l_A Nuclear receptor ROR-ga 75.7 9 0.00031 24.2 5.8 33 46-78 62-94 (248)
55 3cqv_A Nuclear receptor subfam 75.3 11 0.00038 22.8 5.9 28 51-78 31-58 (199)
56 3pna_A CAMP-dependent protein 72.6 1.1 3.7E-05 25.7 0.7 28 50-77 30-57 (154)
57 1n83_A Nuclear receptor ROR-al 71.7 14 0.00047 23.8 5.9 28 50-77 75-102 (270)
58 1pdu_A DHR38, nuclear hormone 70.4 14 0.00048 23.3 5.7 40 38-77 45-84 (244)
59 3n00_A REV-ERBA-alpha; reverba 67.8 11 0.00037 23.9 4.7 30 49-78 74-103 (245)
60 1nq7_A Nuclear receptor ROR-be 66.5 15 0.0005 23.1 5.2 27 51-77 61-87 (244)
61 3ltx_A Estrogen receptor; cons 66.3 19 0.00066 22.5 5.7 34 45-78 41-74 (243)
62 3oll_A Estrogen receptor beta; 66.1 21 0.00071 22.2 5.8 34 45-78 38-71 (240)
63 3vi8_A Peroxisome proliferator 63.8 23 0.00079 22.8 5.8 30 49-78 85-114 (273)
64 1yye_A ER-beta, estrogen recep 60.5 29 0.00099 22.1 5.8 33 46-78 37-69 (268)
65 3vhv_A Mineralocorticoid recep 58.6 32 0.0011 21.8 5.8 32 47-78 47-78 (260)
66 3gyt_A Nuclear hormone recepto 58.6 20 0.0007 22.8 4.8 27 52-78 53-79 (244)
67 1osh_A BIle acid receptor; nuc 57.8 23 0.0008 21.8 4.9 29 50-78 52-80 (232)
68 1xpc_A Estrogen receptor; nucl 57.5 23 0.00079 22.2 4.9 33 46-78 41-73 (248)
69 3vhu_A Mineralocorticoid recep 57.1 37 0.0013 22.1 6.0 29 50-78 84-112 (294)
70 1fcy_A RAR-gamma-1, retinoic a 57.0 30 0.001 21.4 5.3 30 48-77 52-81 (236)
71 2nxx_E Ecdysone receptor (ECR, 56.7 25 0.00085 22.1 4.9 28 51-78 63-90 (248)
72 2ocf_A Estrogen receptor; estr 56.6 35 0.0012 22.3 5.8 34 45-78 49-82 (298)
73 1l2j_A Estrogen receptor beta; 56.5 36 0.0012 21.7 5.8 30 49-78 68-97 (271)
74 3b0t_A Vitamin D3 receptor; nu 55.9 25 0.00087 22.0 4.9 29 50-78 66-94 (254)
75 3ipq_A Oxysterols receptor LXR 55.7 38 0.0013 21.7 5.8 30 49-78 97-126 (283)
76 3kmr_A Retinoic acid receptor 54.7 35 0.0012 21.8 5.4 29 50-78 78-106 (266)
77 3k6p_A Steroid hormone recepto 54.6 28 0.00096 21.9 4.9 30 49-78 57-86 (248)
78 2nxx_A Ultraspiracle (USP, NR2 54.3 26 0.0009 21.7 4.7 29 50-78 47-75 (235)
79 2iz2_A FTZ-F1 alpha, nuclear h 54.0 33 0.0011 21.5 5.1 27 52-78 58-84 (243)
80 3ilz_A Thyroid hormone recepto 53.6 27 0.00092 22.3 4.7 40 38-78 69-108 (267)
81 2p1t_A Retinoic acid receptor 53.6 26 0.00088 21.7 4.6 27 52-78 53-79 (240)
82 3u9q_A Peroxisome proliferator 53.6 29 0.001 22.2 4.9 26 53-78 86-111 (269)
83 1sqn_A PR, progesterone recept 53.5 40 0.0014 21.3 5.8 32 47-78 48-79 (261)
84 3plz_A FTZ-F1 related protein; 53.0 30 0.001 21.9 4.9 27 52-78 68-94 (257)
85 1t7r_A Androgen receptor; nucl 52.9 42 0.0014 21.4 5.8 29 50-78 59-87 (269)
86 3cjw_A COUP transcription fact 52.9 26 0.00089 21.8 4.5 26 53-78 50-75 (244)
87 1xdk_B RAR-beta, retinoic acid 52.8 33 0.0011 22.3 5.1 29 50-78 81-109 (303)
88 1ovl_A Orphan nuclear receptor 52.7 37 0.0013 21.5 5.3 29 50-78 84-112 (271)
89 1ymt_A Steroidogenic factor 1; 52.3 32 0.0011 21.5 4.9 28 51-78 56-83 (246)
90 2o4j_A Vitamin D3 receptor; nu 51.6 31 0.0011 22.3 4.9 29 49-77 68-96 (292)
91 3up3_A Acedaf-12; ligand bindi 51.5 21 0.00071 22.6 3.9 29 50-78 51-79 (243)
92 2r40_D Ecdysone receptor, 20-h 51.4 33 0.0011 21.8 4.9 27 52-78 80-106 (266)
93 3mnp_A Glucocorticoid receptor 51.1 45 0.0015 21.2 5.8 30 49-78 51-80 (261)
94 2e2r_A Estrogen-related recept 50.9 43 0.0015 20.9 5.7 29 50-78 58-86 (244)
95 1g2n_A Ultraspiracle protein; 50.8 34 0.0012 21.6 4.9 29 50-78 52-80 (264)
96 2hc4_A Vitamin D receptor; alp 50.7 35 0.0012 22.3 5.0 29 50-78 112-140 (302)
97 3f5c_B Nuclear receptor subfam 50.4 26 0.00089 22.5 4.3 27 52-78 59-85 (268)
98 1xvp_B Orphan nuclear receptor 50.1 25 0.00085 21.9 4.1 32 47-78 61-92 (246)
99 3p0u_A Nuclear receptor subfam 49.8 28 0.00096 21.9 4.3 26 53-78 47-72 (249)
100 1z5x_E Ecdysone receptor ligan 49.4 36 0.0012 22.4 4.9 26 53-78 129-154 (310)
101 1lbd_A RXR_LBD, retinoid X rec 49.4 31 0.0011 22.0 4.5 26 53-78 96-121 (282)
102 3v3e_B Nuclear receptor subfam 49.1 30 0.001 22.0 4.4 27 52-78 64-90 (257)
103 1hg4_A Ultraspiracle; nuclear 47.0 42 0.0015 21.3 4.9 28 51-78 58-85 (279)
104 1nrl_A Orphan nuclear receptor 44.4 35 0.0012 22.6 4.3 32 47-78 127-158 (316)
105 1pzl_A Hepatocyte nuclear fact 42.8 34 0.0012 21.0 3.8 26 53-78 54-79 (237)
106 3dzy_D Peroxisome proliferator 42.1 52 0.0018 22.5 5.0 26 53-78 235-260 (419)
107 2gsm_B Cytochrome C oxidase su 39.8 31 0.001 22.4 3.4 39 5-48 219-257 (262)
108 3dzy_A Retinoic acid receptor 35.5 66 0.0023 22.4 4.7 26 53-78 281-306 (467)
109 1xat_A Xenobiotic acetyltransf 30.1 58 0.002 20.1 3.4 70 3-74 130-201 (212)
110 1v54_B Cytochrome C oxidase po 29.5 55 0.0019 20.7 3.3 38 5-47 188-225 (227)
111 3cf6_E RAP guanine nucleotide 28.6 22 0.00076 26.1 1.4 43 36-78 6-52 (694)
112 3tx7_B Nuclear receptor subfam 27.6 32 0.0011 23.2 1.9 25 53-77 164-188 (352)
113 3hb3_B Cytochrome C oxidase su 25.8 84 0.0029 20.8 3.7 39 5-48 237-275 (298)
114 3gzf_A Replicase polyprotein 1 21.2 98 0.0034 17.1 2.8 36 34-69 20-55 (96)
115 1l6x_B Minimized B-domain of p 21.1 71 0.0024 14.3 1.9 16 63-78 12-27 (34)
116 3rh3_A Uncharacterized DUF3829 20.2 29 0.001 22.8 0.6 10 3-12 70-79 (264)
No 1
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=2.8e-15 Score=98.48 Aligned_cols=76 Identities=33% Similarity=0.589 Sum_probs=71.3
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
..+++|++|||++++.+.||++||+|.++|++|.|++++|..++.+.+..++..+..+++++++|+.+++.++...
T Consensus 101 ~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l 176 (299)
T 3shr_A 101 CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKL 176 (299)
T ss_dssp EEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHH
T ss_pred EEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998888899999999999999999887543
No 2
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.2e-15 Score=95.11 Aligned_cols=77 Identities=51% Similarity=0.763 Sum_probs=71.0
Q ss_pred CcccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
+..+++|++|||++++.+.||++|++|.++|++|.+++++|..++.+.+..++.....++++++.|+.|++.++...
T Consensus 68 ~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l 144 (246)
T 3of1_A 68 VNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKL 144 (246)
T ss_dssp CEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHH
T ss_pred EEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHH
Confidence 35689999999999999999999999999999999999999999999988888888999999999999999876443
No 3
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=100.65 Aligned_cols=76 Identities=42% Similarity=0.763 Sum_probs=71.3
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
..+++|++|||++++.+.||++|++|.++|++|.|++++|++++.+.+..+++.+..++++++.|..+++.++...
T Consensus 192 ~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l 267 (381)
T 4din_B 192 TNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTV 267 (381)
T ss_dssp EEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHH
T ss_pred eeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999989999999999999999998877543
No 4
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=2.3e-14 Score=93.52 Aligned_cols=76 Identities=42% Similarity=0.766 Sum_probs=71.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
..+++|++|||.+++.+.||++|++|.++|++|.+++++|..++.+++.........+++++++|..|++.++...
T Consensus 101 ~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l 176 (291)
T 2qcs_B 101 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTV 176 (291)
T ss_dssp EEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred EEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998888899999999999999999877543
No 5
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=8.5e-15 Score=101.33 Aligned_cols=76 Identities=55% Similarity=0.944 Sum_probs=71.0
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
..+++|++|||++++.+.||++||+|.++|++|.|++++|.+++.+.+..++..+..+++++++|..|++.++...
T Consensus 211 ~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L 286 (416)
T 3tnp_B 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKV 286 (416)
T ss_dssp EEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHH
T ss_pred EEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998888888899999999999999887554
No 6
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.37 E-value=1.6e-12 Score=76.40 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=53.3
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLID 61 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~ 61 (82)
..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++.........+.+
T Consensus 76 ~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 76 CSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp EEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999998877655555543
No 7
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.33 E-value=6e-13 Score=80.47 Aligned_cols=56 Identities=64% Similarity=1.105 Sum_probs=49.8
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE 57 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~ 57 (82)
..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..+++.+.
T Consensus 104 ~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp EEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred EEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999876654443
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.33 E-value=1.1e-12 Score=77.54 Aligned_cols=54 Identities=37% Similarity=0.646 Sum_probs=44.5
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM 55 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~ 55 (82)
..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..+++.
T Consensus 85 ~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 85 CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp EEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred EEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 468999999999999999999999999999999999999999999998876654
No 9
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.32 E-value=4e-12 Score=79.25 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=53.7
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA 62 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~ 62 (82)
..+++|++|||.+++.+.||+++++|.++|+++.+++++|..++.++|............+
T Consensus 134 ~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 134 TSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp EEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred EEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998766555544443
No 10
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.32 E-value=4.3e-12 Score=79.84 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=55.4
Q ss_pred cccCCCCeeehhhhcCCC--CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhC
Q psy8827 2 HAYEDKGSFGELALLYNM--PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~--~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~ 63 (82)
..+++|++|||.+++.+. +|+++|+|.++|+++.+++++|..++.++|.........+.+.+
T Consensus 137 ~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 137 AILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp EEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred EEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 568999999999999998 99999999999999999999999999999988776666665544
No 11
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.29 E-value=1.5e-11 Score=78.33 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=66.4
Q ss_pred cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH-------HHHHHHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR-------KMYEKLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~ 73 (82)
..+++|++|||.+++.+.+ ++++++|.++|+++.+++++|..++.+++.... +........+..+...+..+
T Consensus 87 ~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~ 166 (232)
T 1zyb_A 87 EQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKS 166 (232)
T ss_dssp EEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHH
T ss_pred EEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 4678999999999999998 999999999999999999999999988875543 23444566677788889999
Q ss_pred HHHHHHhh
Q psy8827 74 FFLYLVCA 81 (82)
Q Consensus 74 ~~~~~~~~ 81 (82)
|++.++..
T Consensus 167 Rl~~~L~~ 174 (232)
T 1zyb_A 167 KIIRFFLS 174 (232)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98866543
No 12
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.28 E-value=3.5e-12 Score=80.54 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=62.9
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.++|..... ......+.+..+...+..+|
T Consensus 73 ~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 152 (227)
T 3d0s_A 73 TIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGR 152 (227)
T ss_dssp EEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred EEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46889999999999999999999999999999999999999999887755432 22333344455666788888
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.+++
T Consensus 153 l~~~L~ 158 (227)
T 3d0s_A 153 VAKQLL 158 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 13
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.28 E-value=6.7e-12 Score=79.47 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=63.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.++|..... ......+.+..+...+..+|
T Consensus 77 ~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 156 (232)
T 2gau_A 77 RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGR 156 (232)
T ss_dssp EEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred EEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999999999999999999999888765432 22333444455666788888
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.+++
T Consensus 157 l~~~L~ 162 (232)
T 2gau_A 157 LAETLL 162 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 14
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.28 E-value=8.6e-12 Score=79.20 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=65.3
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++..... ......+.+..+...+..+|
T Consensus 78 ~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 157 (237)
T 3fx3_A 78 SVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQR 157 (237)
T ss_dssp EEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred EEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46789999999999999999999999999999999999999999888765432 33344555666778889999
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.+++
T Consensus 158 l~~~L~ 163 (237)
T 3fx3_A 158 VAEFLL 163 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 15
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.28 E-value=2.9e-12 Score=76.99 Aligned_cols=54 Identities=48% Similarity=0.906 Sum_probs=48.2
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM 55 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~ 55 (82)
..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..++++
T Consensus 100 ~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 100 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp EEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred EEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 468999999999999999999999999999999999999999999988765543
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.27 E-value=1.9e-11 Score=72.61 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=55.5
Q ss_pred cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCcc
Q psy8827 2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPM 65 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~ 65 (82)
..+++|++|||.+++.+.+ ++++++|.++|+++.+++++|..++.+++.........+.+++..
T Consensus 79 ~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 79 EVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp EEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred EEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 5688999999999999998 999999999999999999999999999988776666655554433
No 17
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.26 E-value=1.7e-11 Score=71.94 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=53.9
Q ss_pred ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhC
Q psy8827 3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63 (82)
Q Consensus 3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~ 63 (82)
.+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++...........+++
T Consensus 72 ~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 72 ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp EECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred eECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999887766655555543
No 18
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.26 E-value=9.9e-12 Score=77.28 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred cccCCCCeeehhhhcCCC----CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCC
Q psy8827 2 HAYEDKGSFGELALLYNM----PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQ 70 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~----~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~ 70 (82)
..++||++|||.+++.+. |++++++|.++|+++.+++++|..++.++|...... .......+..+...+
T Consensus 57 ~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 136 (207)
T 2oz6_A 57 GYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLD 136 (207)
T ss_dssp EEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999999998 899999999999999999999999998887654322 223333444556678
Q ss_pred HHHHHHHHHh
Q psy8827 71 VMVFFLYLVC 80 (82)
Q Consensus 71 ~~~~~~~~~~ 80 (82)
..+|++.+++
T Consensus 137 ~~~Rl~~~L~ 146 (207)
T 2oz6_A 137 VTGRVARTLL 146 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776553
No 19
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.25 E-value=6.7e-12 Score=78.50 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH-------HHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY-------EKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~-------~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++....... ....+.+..+...+..+|
T Consensus 66 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~R 145 (216)
T 4ev0_A 66 ALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNR 145 (216)
T ss_dssp EEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4689999999999999999999999999999999999999999988876543322 222333334444556677
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.++.
T Consensus 146 l~~~L~ 151 (216)
T 4ev0_A 146 VAYALL 151 (216)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 20
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.24 E-value=1.4e-11 Score=76.73 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~ 73 (82)
..++||++|||.+++.+. |++++++|.++|+++.+++++|..++.+++...... .......+..+...+..+
T Consensus 63 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 142 (210)
T 3ryp_A 63 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTG 142 (210)
T ss_dssp EEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred EEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 457899999999999988 899999999999999999999999998877554322 223334445556677888
Q ss_pred HHHHHHh
Q psy8827 74 FFLYLVC 80 (82)
Q Consensus 74 ~~~~~~~ 80 (82)
|++.++.
T Consensus 143 Rl~~~L~ 149 (210)
T 3ryp_A 143 RIAQTLL 149 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8775554
No 21
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.23 E-value=1.6e-11 Score=72.52 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=49.2
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~ 56 (82)
..+++|++|||.+++.+.|++++++|.++|+++.+++++|.+++.+++.......
T Consensus 72 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 72 AVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp EEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred EEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 4688999999999999999999999999999999999999999998876654433
No 22
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.22 E-value=1.3e-11 Score=76.66 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=50.0
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~ 56 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|.+++.+++.......
T Consensus 106 ~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 106 AKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 4689999999999999999999999999999999999999999998887665444
No 23
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.22 E-value=3.9e-11 Score=75.60 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=62.8
Q ss_pred cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhh-----HHHHHH-------HHHHHHhhCccccC
Q psy8827 2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKS-----AFKKRK-------MYEKLIDAVPMLKS 68 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~-----~~~~~~-------~~~~~l~~~~~~~~ 68 (82)
..++||++|||.+++.+. |++++++|.++|+++.+++++|.+++.++ +..... ......+.+..+..
T Consensus 78 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~ 157 (230)
T 3iwz_A 78 GYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAF 157 (230)
T ss_dssp EEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999985 79999999999999999999999999988 765432 23334455556667
Q ss_pred CCHHHHHHHHHh
Q psy8827 69 LQVMVFFLYLVC 80 (82)
Q Consensus 69 l~~~~~~~~~~~ 80 (82)
.+..+|++.++.
T Consensus 158 ~~~~~Rl~~~L~ 169 (230)
T 3iwz_A 158 LDVTDRIVRTLH 169 (230)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 788888775544
No 24
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.22 E-value=1.3e-11 Score=77.29 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=49.7
Q ss_pred ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827 3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58 (82)
Q Consensus 3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~ 58 (82)
.+++|++|||.+++.+.+|+++|+|.++|+++.+++++|..++.++|.........
T Consensus 135 ~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 135 KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999888665444333
No 25
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.21 E-value=2.1e-11 Score=76.69 Aligned_cols=79 Identities=5% Similarity=0.077 Sum_probs=54.4
Q ss_pred cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~ 73 (82)
..+++|++|||.+++.+. +++++++|.++|+++.+++++|.+++.+++...... .......+..+...+..+
T Consensus 66 ~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~ 145 (213)
T 1o5l_A 66 DEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLRE 145 (213)
T ss_dssp EEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred EEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 468999999999999886 999999999999999999999999998887654322 223334445566677777
Q ss_pred HHHHHHh
Q psy8827 74 FFLYLVC 80 (82)
Q Consensus 74 ~~~~~~~ 80 (82)
|++.+++
T Consensus 146 Rl~~~L~ 152 (213)
T 1o5l_A 146 KLMNFLV 152 (213)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 7776554
No 26
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=83.83 Aligned_cols=52 Identities=31% Similarity=0.379 Sum_probs=48.0
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR 53 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~ 53 (82)
..+++|++|||.+++.+.||++||+|.++|.++.|++++|.+++...+....
T Consensus 316 ~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 316 GRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp EEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred EEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 4689999999999999999999999999999999999999999998876543
No 27
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.21 E-value=2.3e-11 Score=78.87 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=62.6
Q ss_pred cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~ 73 (82)
..++||++|||.+++.+. |++++++|.++|+++.+++++|..++.+++..... ........+..+...+..+
T Consensus 113 ~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~ 192 (260)
T 3kcc_A 113 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTG 192 (260)
T ss_dssp EEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred EEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 467899999999999998 89999999999999999999999999887655432 2333444455566678888
Q ss_pred HHHHHHh
Q psy8827 74 FFLYLVC 80 (82)
Q Consensus 74 ~~~~~~~ 80 (82)
|++.+++
T Consensus 193 Rla~~Ll 199 (260)
T 3kcc_A 193 RIAQTLL 199 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 28
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.21 E-value=3.5e-11 Score=72.00 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=49.5
Q ss_pred cccCCCCeeehhhhcCC--CCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYN--MPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~--~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~ 56 (82)
..+++|++|||.+++.+ .+++++++|.++|+++.+++++|.+++.+++.......
T Consensus 89 ~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 145 (160)
T 4f8a_A 89 AILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFS 145 (160)
T ss_dssp EEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998 79999999999999999999999999999987655433
No 29
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.20 E-value=1.3e-11 Score=80.44 Aligned_cols=52 Identities=29% Similarity=0.361 Sum_probs=48.3
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR 53 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~ 53 (82)
..+++|++|||.+++.+.||++|++|.++|.++.|++++|.+++.+++....
T Consensus 225 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 276 (291)
T 2qcs_B 225 GRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILK 276 (291)
T ss_dssp EEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred EEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence 4689999999999999999999999999999999999999999998887543
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.8e-11 Score=77.63 Aligned_cols=50 Identities=28% Similarity=0.471 Sum_probs=46.9
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK 51 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~ 51 (82)
..+++|++|||.+++.+.||+++|+|.++|+++.|++++|.+++...+..
T Consensus 188 ~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~ 237 (246)
T 3of1_A 188 NKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDV 237 (246)
T ss_dssp EEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred EEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence 46899999999999999999999999999999999999999999887754
No 31
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=2.1e-11 Score=91.42 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=43.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCc-EEEEEEcHHHHHHHHHh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDRKTFKQIVLK 47 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~-~~~~~l~~~~f~~ll~~ 47 (82)
..+++||+|||++++.+.||.|||+|.++ |+++++++++|.+++.+
T Consensus 401 ~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 401 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp EEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred EEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 56899999999999999999999999885 99999999999999954
No 32
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.18 E-value=1.1e-11 Score=78.02 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=58.9
Q ss_pred cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH-------HHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE-------KLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~-------~~l~~~~~~~~l~~~~ 73 (82)
..++||++|||.+++.+.| ++++++|.++|+++.+++++|..++.+++........ .....+..+...+..+
T Consensus 76 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 155 (227)
T 3dkw_A 76 EVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATH 155 (227)
T ss_dssp CEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5688999999999999999 9999999999999999999999999877655433222 2223333344456667
Q ss_pred HHHHHH
Q psy8827 74 FFLYLV 79 (82)
Q Consensus 74 ~~~~~~ 79 (82)
|++.++
T Consensus 156 Rl~~~L 161 (227)
T 3dkw_A 156 RVVRYL 161 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 33
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.17 E-value=1.4e-11 Score=76.08 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=52.7
Q ss_pred cccCCCCeeehh-hhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH-------HHHHHHHhhCccccCCCHHH
Q psy8827 2 HAYEDKGSFGEL-ALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR-------KMYEKLIDAVPMLKSLQVMV 73 (82)
Q Consensus 2 ~~l~~G~~FGE~-al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~ 73 (82)
..++||++|||+ +++.+.|++++++|.++|+++.+++++|.+++.+++.... +......+.+..+...+..+
T Consensus 74 ~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 153 (194)
T 3dn7_A 74 QFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEE 153 (194)
T ss_dssp EEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 457899999998 7889999999999999999999999999999987764432 12223334444555566667
Q ss_pred HHHHHH
Q psy8827 74 FFLYLV 79 (82)
Q Consensus 74 ~~~~~~ 79 (82)
|++.++
T Consensus 154 Rl~~~L 159 (194)
T 3dn7_A 154 QYHNFS 159 (194)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 766544
No 34
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.17 E-value=1.1e-10 Score=72.49 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=57.5
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhH-HHHHHHHHHHHhhCccccCCCHHHHHHHHHh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSA-FKKRKMYEKLIDAVPMLKSLQVMVFFLYLVC 80 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 80 (82)
..++||++||| +++.+.|++++++|.++|+++.+++++|..-+.... ..-..........+..+...+..+|++.+++
T Consensus 43 ~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 121 (195)
T 3b02_A 43 RHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLL 121 (195)
T ss_dssp EEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred EEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46889999999 999999999999999999999999999972221111 1111234445555666777888888876654
No 35
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.16 E-value=1.6e-10 Score=86.65 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=42.9
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~ 48 (82)
+.+++|++||| +++++.||+|||+|.++|++|++++++|+.++.++
T Consensus 111 ~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~ 156 (999)
T 4f7z_A 111 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156 (999)
T ss_dssp EEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred EEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhC
Confidence 56899999999 99999999999999999999999999999998654
No 36
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.16 E-value=7.9e-12 Score=81.95 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=46.6
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK 52 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~ 52 (82)
..+++|++|||.+++.+.||++||+|.++|.++.|++++|.+++.+++...
T Consensus 225 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~ 275 (299)
T 3shr_A 225 RTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVS 275 (299)
T ss_dssp EEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCC
T ss_pred EEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHH
Confidence 468899999999999999999999999999999999999999998766443
No 37
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.15 E-value=1.2e-10 Score=72.88 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=62.5
Q ss_pred cccCCCCe--eehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHH
Q psy8827 2 HAYEDKGS--FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVM 72 (82)
Q Consensus 2 ~~l~~G~~--FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~ 72 (82)
..++||++ |||.+++.+.|++++++|.++|+++.+++++|.+++.+++...... .......+..+...+..
T Consensus 70 ~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 149 (220)
T 3dv8_A 70 YRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLD 149 (220)
T ss_dssp EEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred EecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 46789999 8999999999999999999999999999999999998887654322 22333444556667788
Q ss_pred HHHHHHHh
Q psy8827 73 VFFLYLVC 80 (82)
Q Consensus 73 ~~~~~~~~ 80 (82)
+|++.++.
T Consensus 150 ~Rl~~~L~ 157 (220)
T 3dv8_A 150 KRVASFLL 157 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776554
No 38
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.14 E-value=8.8e-11 Score=74.23 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=47.7
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR 53 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~ 53 (82)
..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++....
T Consensus 73 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (231)
T 3e97_A 73 GDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124 (231)
T ss_dssp EEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred EecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 4678999999999999999999999999999999999999999988776543
No 39
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.14 E-value=4.7e-11 Score=79.36 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=49.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK 58 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~ 58 (82)
..+++|++|||.+++.+.||++|++|.++|+++.|++++|.+++ +++.........
T Consensus 79 ~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~ 134 (333)
T 4ava_A 79 ARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRT 134 (333)
T ss_dssp EEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHH
T ss_pred EEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999 777665444333
No 40
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.14 E-value=1.4e-10 Score=74.27 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=61.7
Q ss_pred cccCCCCeeehhhhcCCCC--ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHH
Q psy8827 2 HAYEDKGSFGELALLYNMP--RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVM 72 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~--r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~ 72 (82)
..++||++|||.+++.+.| ++++++|.++|+++.+++++|.+++.+++...... .......+..+...+..
T Consensus 87 ~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~ 166 (243)
T 3la7_A 87 ALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMG 166 (243)
T ss_dssp EEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred EEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4689999999999999886 56999999999999999999999998887654332 22233344456677888
Q ss_pred HHHHHHHh
Q psy8827 73 VFFLYLVC 80 (82)
Q Consensus 73 ~~~~~~~~ 80 (82)
+|++.+++
T Consensus 167 ~Rla~~L~ 174 (243)
T 3la7_A 167 SRLVSFLL 174 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.12 E-value=3.5e-11 Score=83.23 Aligned_cols=52 Identities=33% Similarity=0.341 Sum_probs=48.0
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR 53 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~ 53 (82)
..+++|++|||++++.+.||++||+|.++|.++.|++++|.+++...+....
T Consensus 340 ~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~ 391 (416)
T 3tnp_B 340 ARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK 391 (416)
T ss_dssp EEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred EEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence 5689999999999999999999999999999999999999999988876543
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.05 E-value=5.9e-10 Score=71.43 Aligned_cols=76 Identities=9% Similarity=-0.000 Sum_probs=60.1
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++||| ++.+. ++++++|.++|+++.+++++|..++.+++..... ......+.+..+...+..+|
T Consensus 76 ~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~R 152 (250)
T 3e6c_C 76 YYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIR 152 (250)
T ss_dssp EEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred EEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46889999999 77777 9999999999999999999999999887654432 23334445556777888888
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.+++
T Consensus 153 l~~~L~ 158 (250)
T 3e6c_C 153 ILRLFY 158 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 43
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.02 E-value=2.3e-10 Score=66.99 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=43.3
Q ss_pred ccCCCCeeehhhh---cCCCC------ceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827 3 AYEDKGSFGELAL---LYNMP------RAATIKATSTGSLWAMDRKTFKQIVLKSAF 50 (82)
Q Consensus 3 ~l~~G~~FGE~al---~~~~~------r~atv~a~~~~~~~~l~~~~f~~ll~~~~~ 50 (82)
.+++|++|||.++ +.+.| ++++++|.++|+++.+++++|.+++.+++.
T Consensus 75 ~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 131 (137)
T 1wgp_A 75 LLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131 (137)
T ss_dssp ECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred eecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHh
Confidence 7899999999996 78775 589999999999999999999999988764
No 44
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.00 E-value=2.1e-10 Score=79.25 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=46.6
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcC-cEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAFKKR 53 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~-~~~~~~l~~~~f~~ll~~~~~~~~ 53 (82)
..+++|++|||.+++.+.||++||+|.+ +|+++.|++++|.+++.+++....
T Consensus 401 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~ 453 (469)
T 1o7f_A 401 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 453 (469)
T ss_dssp EEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred EEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence 5689999999999999999999999998 799999999999999998876543
No 45
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.98 E-value=8.7e-11 Score=81.16 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=45.4
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK 51 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~ 51 (82)
..+++|++|||.+ +.+.||++|++|.++|++|.+++++|..++.+++..
T Consensus 111 ~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~ 159 (469)
T 1o7f_A 111 CTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (469)
T ss_dssp EEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGG
T ss_pred EEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHH
Confidence 4689999999999 999999999999999999999999999999877653
No 46
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.92 E-value=1.1e-09 Score=68.75 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++||| |++++++|.++|+++.+++++|.+++.++|..... ......+.+..+...+..+|
T Consensus 70 ~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~R 142 (220)
T 2fmy_A 70 AILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLR 142 (220)
T ss_dssp EEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 46789999999 89999999999999999999999999887655432 22333344445556677777
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.++.
T Consensus 143 l~~~L~ 148 (220)
T 2fmy_A 143 LAEFLV 148 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 47
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.90 E-value=5.8e-10 Score=65.34 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=42.8
Q ss_pred ccCCCCeeehhhhcCCCCceeEE-EEcCcEEEEEEcHHHHHHHHHhh
Q psy8827 3 AYEDKGSFGELALLYNMPRAATI-KATSTGSLWAMDRKTFKQIVLKS 48 (82)
Q Consensus 3 ~l~~G~~FGE~al~~~~~r~atv-~a~~~~~~~~l~~~~f~~ll~~~ 48 (82)
.+++|++|||.+++.+.++++++ +|.++|+++.+++++|..++.+.
T Consensus 80 ~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (134)
T 2d93_A 80 NLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHV 126 (134)
T ss_dssp EECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCC
T ss_pred EecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHH
Confidence 47899999999999999999999 99999999999999999998654
No 48
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.90 E-value=2.5e-09 Score=68.11 Aligned_cols=78 Identities=4% Similarity=-0.053 Sum_probs=57.2
Q ss_pred cccCCCCeeehhhhcCCCCc--eeEEEEc-CcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCH
Q psy8827 2 HAYEDKGSFGELALLYNMPR--AATIKAT-STGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQV 71 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r--~atv~a~-~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~ 71 (82)
..+ ||++|||.+++.+.++ +.++.|. ++|+++.+++++|..++.+++...... .......+..+...+.
T Consensus 62 ~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 140 (238)
T 2bgc_A 62 QYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGK 140 (238)
T ss_dssp EEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred EEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 346 8999999999999875 6677777 599999999999999998877554322 2233344455566677
Q ss_pred HHHHHHHHh
Q psy8827 72 MVFFLYLVC 80 (82)
Q Consensus 72 ~~~~~~~~~ 80 (82)
.+|++.++.
T Consensus 141 ~~Rla~~L~ 149 (238)
T 2bgc_A 141 LGSICSQLL 149 (238)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788776554
No 49
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.84 E-value=3.7e-09 Score=66.52 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~ 74 (82)
..++||++|| .|++++++|.++|+++.+++++|..++.++|..... ........+..+...+..+|
T Consensus 66 ~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 138 (222)
T 1ft9_A 66 FYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQR 138 (222)
T ss_dssp EEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4678999999 789999999999999999999999999877643322 22333444455566677777
Q ss_pred HHHHHh
Q psy8827 75 FLYLVC 80 (82)
Q Consensus 75 ~~~~~~ 80 (82)
++.+++
T Consensus 139 l~~~L~ 144 (222)
T 1ft9_A 139 IAGFFI 144 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 50
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.81 E-value=4.6e-10 Score=75.80 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=0.0
Q ss_pred ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy8827 3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE 57 (82)
Q Consensus 3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~ 57 (82)
.+++||+|||.+++.+.||+++++|.++|+++.+++++|.++++++|.......+
T Consensus 289 ~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~ 343 (355)
T 3beh_A 289 ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 343 (355)
T ss_dssp -------------------------------------------------------
T ss_pred EECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999876554433
No 51
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.80 E-value=4.5e-09 Score=65.27 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=53.2
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHH-HHHHHHHHHHhhCccccCCCHHHHHHHHHh
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAF-KKRKMYEKLIDAVPMLKSLQVMVFFLYLVC 80 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 80 (82)
..++||++||| +++.+.|++++++|.++|+++.+ +++|..-+..... .-.+........+..+...+..+|++.+++
T Consensus 51 ~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~ 128 (202)
T 2zcw_A 51 RLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALL 128 (202)
T ss_dssp EEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred EEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46899999999 99999999999999999999999 9887621111111 111233334444555666777888776554
No 52
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.58 E-value=2.2e-08 Score=73.37 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=44.9
Q ss_pred cccCCCCeeehhhhcCCCCceeEEEEcC-cEEEEEEcHHHHHHHHHhhHH
Q psy8827 2 HAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAF 50 (82)
Q Consensus 2 ~~l~~G~~FGE~al~~~~~r~atv~a~~-~~~~~~l~~~~f~~ll~~~~~ 50 (82)
..+++|++|||.+++.+.+++++++|.+ +|+++.+++++|.+++.+++.
T Consensus 96 ~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~ 145 (694)
T 3cf6_E 96 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 145 (694)
T ss_dssp EEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred EEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence 5688999999999999999999999999 599999999999999976653
No 53
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=92.09 E-value=0.019 Score=33.69 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=32.7
Q ss_pred ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 21 RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 21 r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
|.++|.|.. ...+.....++..++........+.+..+++++|+|+.+++.+....
T Consensus 2 rr~~v~ae~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l 57 (161)
T 3idb_B 2 RRASVCAEA-YNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQV 57 (161)
T ss_dssp CCCCEECCC-CCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHH
T ss_pred CceeEEecc-CCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHH
Confidence 445554432 22344455666666655555667788899999999999999876543
No 54
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=75.71 E-value=9 Score=24.24 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 46 LKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 46 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.+..........+|.+++|.|..|+.++++..+
T Consensus 62 ~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LL 94 (248)
T 3l0l_A 62 AHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLL 94 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHH
Confidence 333444556788999999999999987765543
No 55
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=75.35 E-value=11 Score=22.85 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 51 KKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.......++.+++|.|..|+.++++..+
T Consensus 31 ~~l~~~V~waK~lp~F~~L~~~DQ~~LL 58 (199)
T 3cqv_A 31 PAVKEVVEFAKRIPGFRDLSQHDQVNLL 58 (199)
T ss_dssp HHHHHHHHHHHTSGGGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhhCCHHHHHHHH
Confidence 3456788999999999999987765543
No 56
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=72.61 E-value=1.1 Score=25.74 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
....+.+..+++++|+|+.|+++++...
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l 57 (154)
T 3pna_A 30 YKTMAALAKAIEKNVLFSHLDDNERSDI 57 (154)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhCCHHHHHHH
Confidence 3445677889999999999999876543
No 57
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=71.67 E-value=14 Score=23.76 Aligned_cols=28 Identities=4% Similarity=-0.096 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
........++.+++|.|..|+.+.++..
T Consensus 75 ~~~l~~~VewaK~lP~F~~L~~~DQi~L 102 (270)
T 1n83_A 75 TEAIQYVVEFAKRIDGFMELCQNDQIVL 102 (270)
T ss_dssp HHHHHHHHHHHHHSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhcCHHHHHHH
Confidence 3345678899999999999998776554
No 58
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=70.44 E-value=14 Score=23.35 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 38 RKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 38 ~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
+.+.-..+.+..........++.+++|.|..|+.++++..
T Consensus 45 ~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~L 84 (244)
T 1pdu_A 45 EADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELL 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 3333333334444455678899999999999998776554
No 59
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=67.83 E-value=11 Score=23.92 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.........++.+++|.|..|+.++++..+
T Consensus 74 ~~~~l~~~VewAK~lP~F~~L~~~DQ~~LL 103 (245)
T 3n00_A 74 FTPAVREVVEFAKHIPGFRDLSQHDQVTLL 103 (245)
T ss_dssp HHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 334456788999999999999988776543
No 60
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=66.53 E-value=15 Score=23.10 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 51 KKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
.......++.+++|.|..|+.+.++..
T Consensus 61 ~~l~~~VewaK~lp~F~~L~~~DQ~~L 87 (244)
T 1nq7_A 61 HAIQYVVEFAKRITGFMELCQNDQILL 87 (244)
T ss_dssp HHHHHHHHHHHTCHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 345578899999999999998776554
No 61
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=66.26 E-value=19 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=24.9
Q ss_pred HHhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 45 VLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 45 l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+.+..........++.+++|.|..|+.++++..+
T Consensus 41 ~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LL 74 (243)
T 3ltx_A 41 LVKLAERELVHLINWAKNVPGYTDLSLSDQVHLI 74 (243)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHH
Confidence 3344444556788999999999999987765543
No 62
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=66.06 E-value=21 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 45 VLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 45 l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+.+..........++.+++|.|..|+.++++..+
T Consensus 38 ~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LL 71 (240)
T 3oll_A 38 LTKLADKELVHMISWAKKIPGFVELSLFDQVRLL 71 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHH
Confidence 3344444556788999999999999987765543
No 63
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=63.81 E-value=23 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....+...+|.+++|.|..|+.+.++..|
T Consensus 85 ~~~~v~~iVewAK~iPgF~~L~~~DQi~LL 114 (273)
T 3vi8_A 85 SVETVTELTEFAKAIPGFANLDLNDQVTLL 114 (273)
T ss_dssp HHHHHHHHHHHGGGSTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcCcccCCHHHHHHHH
Confidence 344567889999999999999987765543
No 64
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=60.51 E-value=29 Score=22.13 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=24.3
Q ss_pred HhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 46 LKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 46 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.+..........++.+++|.|..|+.++++..+
T Consensus 37 ~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LL 69 (268)
T 1yye_A 37 TKLADKELVHMISWAKKIPGFVELSLFDQVRLL 69 (268)
T ss_dssp HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHH
Confidence 334444456788999999999999987765543
No 65
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=58.60 E-value=32 Score=21.81 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 47 KSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+..........++.+++|.|..|+.++++..+
T Consensus 47 e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LL 78 (260)
T 3vhv_A 47 RLAGKQMIQVVKWAKVLPGFKNLPLEDQITLI 78 (260)
T ss_dssp HHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHhcCCHHHHHHHH
Confidence 33344456788899999999999987765543
No 66
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=58.56 E-value=20 Score=22.81 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......+|.+++|.|..|+.+.++..|
T Consensus 53 ~l~~iVefAK~iPgF~~L~~~DQi~LL 79 (244)
T 3gyt_A 53 TMRRLVKMAKRLGAFNEISEAGKFSLL 79 (244)
T ss_dssp HHHHHHHHHHTCGGGGGSCHHHHHHHH
T ss_pred HHHHHHHHHccCCCcccCCHHHHHHHH
Confidence 355678999999999999987765543
No 67
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=57.82 E-value=23 Score=21.82 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 52 ~~~l~~~vewaK~lp~F~~L~~~DQ~~LL 80 (232)
T 1osh_A 52 TNHVQVLVEFTKKLPGFQTLDHEDQIALL 80 (232)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhhCCHHHHHHHH
Confidence 33456788899999999999987765543
No 68
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=57.48 E-value=23 Score=22.15 Aligned_cols=33 Identities=15% Similarity=0.000 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 46 LKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 46 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
-+..........++.+++|.|..|+.++++..+
T Consensus 41 ~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LL 73 (248)
T 1xpc_A 41 TNLADRELVHMINWAKRVPGFVDLTLHDQVHLL 73 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCHHHHHHHH
Confidence 334444455788899999999999987765543
No 69
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=57.14 E-value=37 Score=22.10 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 84 ~~~l~~~VewAK~lP~F~~L~~~DQi~LL 112 (294)
T 3vhu_A 84 GKQMIQVVKWAKVLPGFKNLPLEDQITLI 112 (294)
T ss_dssp HHHHHHHHHHHHTCTTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhhCCHHHHHHHH
Confidence 33456788899999999999987765543
No 70
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=56.99 E-value=30 Score=21.45 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 48 SAFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 48 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
..........++.+++|.|..|+.+.++..
T Consensus 52 ~~~~~l~~~VewaK~lp~F~~L~~~DQ~~L 81 (236)
T 1fcy_A 52 LATKCIIKIVEFAKRLPGFTGLSIADQITL 81 (236)
T ss_dssp HHHHHHHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcccCCHHHHHHH
Confidence 334445678899999999999998776554
No 71
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=56.74 E-value=25 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 51 KKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.......++.+++|.|..|+.++++..+
T Consensus 63 ~~l~~~VewaK~lp~F~~L~~~DQ~~LL 90 (248)
T 2nxx_E 63 LTVQLIVEFAKRLPGFDKLLREDQIALL 90 (248)
T ss_dssp HHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhhCCHHHHHHHH
Confidence 3445778899999999999987765543
No 72
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=56.65 E-value=35 Score=22.26 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=24.7
Q ss_pred HHhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 45 VLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 45 l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+.+..........++.+++|.|..|+.++++..+
T Consensus 49 l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LL 82 (298)
T 2ocf_A 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLL 82 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHH
Confidence 3344444456788999999999999987765543
No 73
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=56.46 E-value=36 Score=21.72 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.........++.+++|.|..|+.++++..+
T Consensus 68 a~~~l~~~VewAK~lP~F~~L~~~DQi~LL 97 (271)
T 1l2j_A 68 ADKELVHMISWAKKIPGFVELSLFDQVRLL 97 (271)
T ss_dssp HHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCHHHHHHHH
Confidence 334456788899999999999987765543
No 74
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=55.94 E-value=25 Score=22.02 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 66 ~~~l~~~VewaK~ip~F~~L~~~DQ~~LL 94 (254)
T 3b0t_A 66 SYSIQKVIGFAKMIPGFRDLTSEDQIVLL 94 (254)
T ss_dssp HHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcccCCHHHHHHHH
Confidence 33456788999999999999987765543
No 75
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=55.73 E-value=38 Score=21.74 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
..........|.+++|.|..|+.++++..+
T Consensus 97 ~~~~l~~~VewaK~lP~F~~L~~~DQ~~LL 126 (283)
T 3ipq_A 97 AIVSVQEIVDFAKQLPGFLQLSREDQIALL 126 (283)
T ss_dssp HHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcChhhCCHHHHHHHH
Confidence 334456788999999999999988776543
No 76
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=54.74 E-value=35 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........+|.+++|.|..|+.++++..+
T Consensus 78 ~~~l~~~VewaK~lP~F~~L~~~DQi~LL 106 (266)
T 3kmr_A 78 TKCIIKTVEFAKQLPGFTTLTIADQITLL 106 (266)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcChhhCCHHHHHHHH
Confidence 34456788999999999999987765543
No 77
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=54.62 E-value=28 Score=21.86 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.........++.+++|.|..|+.++++..+
T Consensus 57 a~~~l~~~VewaK~ip~F~~L~~~DQ~~LL 86 (248)
T 3k6p_A 57 FDREIVVTISWAKSIPGFSSLSLSDQMSVL 86 (248)
T ss_dssp HHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccCCHHHHHHHH
Confidence 334456788899999999999987776543
No 78
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=54.28 E-value=26 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 47 ~~~l~~~vewaK~ip~F~~L~~~DQ~~LL 75 (235)
T 2nxx_A 47 HKQLFQLVQWAKLVPHFTSLPLTDQVQLL 75 (235)
T ss_dssp HHHHHHHHHHHHHSTTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 33456788899999999999987765543
No 79
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=53.98 E-value=33 Score=21.47 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......++.+++|.|..|+.++++..+
T Consensus 58 ~l~~~VewaK~lp~F~~L~~~DQ~~LL 84 (243)
T 2iz2_A 58 NLFSQVDWARNTVFFKDLKVDDQMKLL 84 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhChhHhhCChHHHHHHH
Confidence 345778899999999999987765543
No 80
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=53.62 E-value=27 Score=22.25 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 38 RKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 38 ~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.+.|..+- +..........+|.+++|.|..|+.++++..+
T Consensus 69 ~~~~~~~~-~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LL 108 (267)
T 3ilz_A 69 LEAFSEFT-KIITPAITRVVDFAKKLPMFSELPXEDQIILL 108 (267)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCcchhhCCHhHHHHHH
Confidence 34444433 33344566788999999999999987765543
No 81
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=53.61 E-value=26 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......++.+++|.|+.|+.++++..+
T Consensus 53 ~l~~~vewak~ip~F~~L~~~DQ~~LL 79 (240)
T 2p1t_A 53 QLFTLVEWAKRIPHFSELPLDDQVILL 79 (240)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcChhcCCHHHHHHHH
Confidence 345678899999999999987776543
No 82
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=53.57 E-value=29 Score=22.23 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....+|.+++|.|..|+.+.++..+
T Consensus 86 v~~~VewAK~iP~F~~L~~~DQi~LL 111 (269)
T 3u9q_A 86 VQEITEYAKSIPGFVNLDLNDQVTLL 111 (269)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHcCCCChhhcCHHHHHHHH
Confidence 34678999999999999987776544
No 83
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=53.54 E-value=40 Score=21.35 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 47 KSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+..........++.+++|.|..|+.++++..+
T Consensus 48 e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LL 79 (261)
T 1sqn_A 48 QLGERQLLSVVKWSKSLPGFRNLHIDDQITLI 79 (261)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccHhhCCHHHHHHHH
Confidence 33444456788899999999999987765543
No 84
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=52.99 E-value=30 Score=21.92 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......++.+++|.|..|+.++++..+
T Consensus 68 ~l~~~VewaK~ip~F~~L~~~DQ~~LL 94 (257)
T 3plz_A 68 TLFSIVEWARSSIFFRELKVDDQMKLL 94 (257)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHcCcChhcCCHHHHHHHH
Confidence 345678899999999999987765543
No 85
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=52.93 E-value=42 Score=21.36 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 59 ~~~l~~~VewAK~ip~F~~L~~~DQv~LL 87 (269)
T 1t7r_A 59 ERQLVHVVKWAKALPGFRNLHVDDQMAVI 87 (269)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHhhCCHHHHHHHH
Confidence 33456788899999999999987765543
No 86
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=52.92 E-value=26 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....++.+++|.|..|+.++++..+
T Consensus 50 l~~~VewaK~lp~F~~L~~~DQ~~LL 75 (244)
T 3cjw_A 50 LFSAVEWARNIPFFPDLQITDQVALL 75 (244)
T ss_dssp HHHHHHHHHHSSSGGGSCHHHHHHHH
T ss_pred HHHHHhHHHhCCChhcCCHHHHHHHH
Confidence 44678899999999999987766543
No 87
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=52.76 E-value=33 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........+|.+++|.|..|+.++++..|
T Consensus 81 ~~~l~~~VewaK~iP~F~~L~~~DQi~LL 109 (303)
T 1xdk_B 81 TKCIIKIVEFAKRLPGFTGLTIADQITLL 109 (303)
T ss_dssp HHHHHHHHHHHHTSTTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccCCHHHHHHHH
Confidence 33456788999999999999987765543
No 88
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=52.66 E-value=37 Score=21.48 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 84 ~~~l~~~v~waK~ip~F~~L~~~DQ~~LL 112 (271)
T 1ovl_A 84 TGSMEIIRGWAEKIPGFADLPKADQDLLF 112 (271)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCChHHHHHHH
Confidence 33456778999999999999987765543
No 89
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=52.29 E-value=32 Score=21.48 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 51 KKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.......++.+++|.|..|+.++++..+
T Consensus 56 ~~l~~~V~waK~lp~F~~L~~~DQ~~LL 83 (246)
T 1ymt_A 56 QTFISIVDWARRCMVFKELEVADQMTLL 83 (246)
T ss_dssp HHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHhChhHHhCCHHHHHHHH
Confidence 3345688899999999999987765543
No 90
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=51.64 E-value=31 Score=22.30 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
.........++.+++|.|..|+.+.++..
T Consensus 68 ~~~~l~~~VewAK~iP~F~~L~~~DQi~L 96 (292)
T 2o4j_A 68 VSYSIQKVIGFAKMIPGFRDLTSDDQIVL 96 (292)
T ss_dssp HHHHHHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhccHHHHHHH
Confidence 33345678899999999999998776554
No 91
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=51.50 E-value=21 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........+|.+++|.|..|+.+.++..+
T Consensus 51 ~~~l~~~VewAK~iP~F~~L~~~DQi~LL 79 (243)
T 3up3_A 51 DVTMRRFVKMAKRLPAFNDLSQDGKFALL 79 (243)
T ss_dssp HHHHHHHHHHHHHCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccCCHHHHHHHH
Confidence 33455788999999999999987765543
No 92
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=51.42 E-value=33 Score=21.83 Aligned_cols=27 Identities=7% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......++.+++|.|..|+.+.++..+
T Consensus 80 ~l~~~VewaK~lp~F~~L~~~DQi~LL 106 (266)
T 2r40_D 80 TVQLIVEFAKGLPGFAKISQSDQITLL 106 (266)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccCCHHHHHHHH
Confidence 345788899999999999987765543
No 93
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=51.08 E-value=45 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 49 AFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.........++.+++|.|..|+.++++..+
T Consensus 51 a~~~l~~~VewaK~iP~F~~L~~~DQ~~LL 80 (261)
T 3mnp_A 51 GGRQVIAAVKWAKAIPGFRNLHLDDQMTLL 80 (261)
T ss_dssp HHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhcCCHHHHHHHH
Confidence 333445678899999999999987765543
No 94
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=50.93 E-value=43 Score=20.91 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 58 ~~~l~~~VewaK~ip~F~~L~~~DQ~~LL 86 (244)
T 2e2r_A 58 DRELVVIIGWAKHIPGFSTLSLADQMSLL 86 (244)
T ss_dssp HHHHHHHHHHHTTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 33455778999999999999987765543
No 95
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=50.84 E-value=34 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.++++..+
T Consensus 52 ~~~l~~~VewaK~lp~F~~L~~~DQ~~LL 80 (264)
T 1g2n_A 52 NKQIAALVVWARDIPHFSQLEMEDQILLI 80 (264)
T ss_dssp HHHHHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhcCCHHHHHHHH
Confidence 33456788899999999999987765543
No 96
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=50.66 E-value=35 Score=22.27 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 50 FKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 50 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
........++.+++|.|..|+.+.++..|
T Consensus 112 ~~~l~~~VewAK~iP~F~~L~~~DQi~LL 140 (302)
T 2hc4_A 112 SYSIQKVIGFAKMIPGFRDLTAEDQIALL 140 (302)
T ss_dssp HHHHHHHHHHHTTSTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 33456788999999999999987765543
No 97
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=50.44 E-value=26 Score=22.48 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......+|.+++|.|..|+.++++..+
T Consensus 59 ~L~~~V~wAK~iP~F~~L~~~DQv~LL 85 (268)
T 3f5c_B 59 GLLKTLRFVKYLPCFQILPLDQQLVLV 85 (268)
T ss_dssp HHHHHHHHHHTCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCCCcccCCHHHHHHHH
Confidence 345678999999999999987665543
No 98
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=50.08 E-value=25 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 47 KSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+..........++.+++|.|..|+.+.++..+
T Consensus 61 e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LL 92 (246)
T 1xvp_B 61 DINTFMVLQVIKFTKDLPVFRSLPIEDQISLL 92 (246)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchhhCCHHHHHHHH
Confidence 33344556788999999999999987765543
No 99
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=49.78 E-value=28 Score=21.87 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....++.+++|.|..|+.++++..+
T Consensus 47 L~~~VewaK~iP~F~~L~~~DQ~~LL 72 (249)
T 3p0u_A 47 LFLSMHWARSIPAFQALGQDCNTSLV 72 (249)
T ss_dssp HHHHHHHHHTCTTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHcCcchhcCCHHHHHHHH
Confidence 34678899999999999987765543
No 100
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=49.44 E-value=36 Score=22.38 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....+|.+++|.|..|+.++++..|
T Consensus 129 l~~~VewAK~lP~F~~L~~~DQi~LL 154 (310)
T 1z5x_E 129 VQLIVEFSKRLPGFDKLIREDQIALL 154 (310)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCcchhhCCHHHHHHHH
Confidence 45678899999999999987765543
No 101
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=49.37 E-value=31 Score=22.02 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....++.+++|.|..|+.++++..+
T Consensus 96 l~~~vewaK~ip~F~~L~~~DQ~~LL 121 (282)
T 1lbd_A 96 LFTLVEWAKRIPHFSELPLDDQVILL 121 (282)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHHH
Confidence 45677899999999999987775543
No 102
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=49.06 E-value=30 Score=22.02 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 52 KRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 52 ~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
..+...+|.+++|.|..|+.+.++..|
T Consensus 64 ~i~~iV~wAK~iP~F~~L~~~DQi~LL 90 (257)
T 3v3e_B 64 SLEVIRKWAEKIPGFAELSPADQDLLL 90 (257)
T ss_dssp THHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCHHHHHHHH
Confidence 456788999999999999987765543
No 103
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=47.05 E-value=42 Score=21.27 Aligned_cols=28 Identities=11% Similarity=0.085 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 51 KKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.......++.+++|.|..|+.++++..+
T Consensus 58 ~~l~~~VewaK~lp~F~~L~~~DQ~~LL 85 (279)
T 1hg4_A 58 KQLFQMVEYARMMPHFAQVPLDDQVILL 85 (279)
T ss_dssp HHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhhCCHHHHHHHH
Confidence 3445778899999999999987765543
No 104
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=44.42 E-value=35 Score=22.56 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 47 KSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
+..........++.+++|.|..|+.+.++..|
T Consensus 127 e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LL 158 (316)
T 1nrl_A 127 DMSTYMFKGIISFAKVISYFRDLPIEDQISLL 158 (316)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhhcCHHHHHHHH
Confidence 33444556788999999999999987665543
No 105
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=42.78 E-value=34 Score=20.95 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
......+.+++|.|+.|+.++++..+
T Consensus 54 l~~~v~wak~~p~F~~L~~~DQ~~LL 79 (237)
T 1pzl_A 54 LLVLVEWAKYIPAFCELPLDDQVALL 79 (237)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccCCHHHHHHHH
Confidence 34678899999999999988776543
No 106
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=42.10 E-value=52 Score=22.53 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....+|.+++|.|..|+.++++..|
T Consensus 235 l~~~VewAK~iP~F~~L~~~DQi~LL 260 (419)
T 3dzy_D 235 VQEITEYAKSIPGFVNLDLNDQVTLL 260 (419)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHH
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHH
Confidence 34577999999999999987766544
No 107
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=39.84 E-value=31 Score=22.40 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827 5 EDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48 (82)
Q Consensus 5 ~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~ 48 (82)
+||.++|.-+=+.|..++. -+..+.+++.++|.++++++
T Consensus 219 ~~G~y~g~Cse~CG~~H~~-----M~~~v~vv~~~~f~~W~~~~ 257 (262)
T 2gsm_B 219 REGIFFGQCSELCGISHAY-----MPITVKVVSEEAYAAWLEQH 257 (262)
T ss_dssp SCEEEEECCCSCCSTTGGG-----CCEEEEEECHHHHHHHHHHH
T ss_pred CcEEEEEEChHhcccCccc-----CeEEEEEEcHHHHHHHHHHh
Confidence 5677777776666655532 24577789999999999775
No 108
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=35.49 E-value=66 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.....++.+++|.|..|+.++++..|
T Consensus 281 L~~vVeWAK~iP~F~~L~~~DQi~LL 306 (467)
T 3dzy_A 281 LFTLVEWAKRIPHFSELPLDDQVILL 306 (467)
T ss_dssp HHHHHHHHHHSTTSTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCcchhcCCHHHHHHHH
Confidence 34577899999999999988776544
No 109
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*
Probab=30.14 E-value=58 Score=20.14 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=37.6
Q ss_pred ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEE--EcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHH
Q psy8827 3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWA--MDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVF 74 (82)
Q Consensus 3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~--l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 74 (82)
.++.|...|.-+.+...-.+.++.+-.+++... ++.++...+.... ........+-+.++.|...+.+..
T Consensus 130 ~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~~~~~~~~~l~~~~--ww~~~~~~~~~~~~~~~~~~~~~~ 201 (212)
T 1xat_A 130 RVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKRFSDGDIQNLLEMA--WWDWPLADIEAAMPLLCTGDIPAL 201 (212)
T ss_dssp EECTTCEECTTCEECSCBCTTEEEETTTTEEEEESSCHHHHHHHHHHC--GGGSCHHHHHHSHHHHTSSCHHHH
T ss_pred EECCCCEECCCCEEcccCCCCcEEEccCCEEEcccCCHHHHHHHHhhc--cccCCHHHHHHHHHHhhhhhHHHH
Confidence 355666677777776655556677777787776 4555555544321 000111223344556665555443
No 110
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=29.54 E-value=55 Score=20.70 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=27.5
Q ss_pred CCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHh
Q psy8827 5 EDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47 (82)
Q Consensus 5 ~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~ 47 (82)
+||.++|.-+=+.|..++. =+..+-+++.++|.+++.+
T Consensus 188 ~~G~y~g~Cse~CG~~Hs~-----M~~~v~vv~~~~f~~W~~~ 225 (227)
T 1v54_B 188 RPGLYYGQCSEICGSNHSF-----MPIVLELVPLKYFEKWSAS 225 (227)
T ss_dssp SCEEEEECCCSCCSTTGGG-----CCEEEEEECHHHHHHHHHH
T ss_pred CcEEEEEEehhhccccccc-----CeEEEEEEcHHHHHHHHHh
Confidence 5788888777777766542 2456678899999998854
No 111
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=28.57 E-value=22 Score=26.09 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=27.6
Q ss_pred EcHHHHHHHHHhhHHHH----HHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827 36 MDRKTFKQIVLKSAFKK----RKMYEKLIDAVPMLKSLQVMVFFLYL 78 (82)
Q Consensus 36 l~~~~f~~ll~~~~~~~----~~~~~~~l~~~~~~~~l~~~~~~~~~ 78 (82)
.+.+.|+.++.+.+..+ .+....+++++++|+.++++++...+
T Consensus 6 ~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~ 52 (694)
T 3cf6_E 6 FPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELA 52 (694)
T ss_dssp -----CHHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHH
T ss_pred CcHHHHHHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHH
Confidence 45567788886554332 34567899999999999998775543
No 112
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=27.60 E-value=32 Score=23.18 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=10.7
Q ss_pred HHHHHHHHhhCccccCCCHHHHHHH
Q psy8827 53 RKMYEKLIDAVPMLKSLQVMVFFLY 77 (82)
Q Consensus 53 ~~~~~~~l~~~~~~~~l~~~~~~~~ 77 (82)
.....++.+++|.|..|+.++++..
T Consensus 164 L~~~VewAK~iP~F~~L~~~DQi~L 188 (352)
T 3tx7_B 164 LFSIVEWARSSIFFRELKVDDQMKL 188 (352)
T ss_dssp HHHHHHHTCCC----------CHHH
T ss_pred HHHHHHHHHcChhhhhCCHHHHHHH
Confidence 4567789999999999998766543
No 113
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=25.83 E-value=84 Score=20.84 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827 5 EDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48 (82)
Q Consensus 5 ~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~ 48 (82)
+||.+.|.-+=+.|..++. =+..+.+++.++|.+++.+.
T Consensus 237 ~~G~y~g~CsE~CG~~Hs~-----M~~~v~vvs~~~F~~Wl~~~ 275 (298)
T 3hb3_B 237 QEGVYFGQCSELCGINHAY-----MPIVVKAVSQEKYEAWLAGA 275 (298)
T ss_dssp SSEEEEECCCSCCSTTTTS-----CCEEEEEECHHHHHHHHHHH
T ss_pred CCEEEEEEcccccCcCccC-----CeeEEEEEcHHHHHHHHHHh
Confidence 4677777766666655432 24577889999999999654
No 114
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=21.18 E-value=98 Score=17.13 Aligned_cols=36 Identities=11% Similarity=0.335 Sum_probs=31.0
Q ss_pred EEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCC
Q psy8827 34 WAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSL 69 (82)
Q Consensus 34 ~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l 69 (82)
++|+.+.|.++....+..+.+.+.....+..+++.-
T Consensus 20 FvId~~~Y~kL~n~is~~~~~~Yla~yNKYKYySGs 55 (96)
T 3gzf_A 20 FVIDMRSYETLVNSTSLDRIKSYANSFNKYKYYTGS 55 (96)
T ss_dssp EEECHHHHHHHHTTTTHHHHHHHHHTHHHHHSCCSC
T ss_pred EEEccHHHHHHHhhcCHHHHHHHHHHHhhhccccCC
Confidence 689999999999888877888888888888888763
No 115
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=21.09 E-value=71 Score=14.27 Aligned_cols=16 Identities=6% Similarity=-0.303 Sum_probs=10.3
Q ss_pred CccccCCCHHHHHHHH
Q psy8827 63 VPMLKSLQVMVFFLYL 78 (82)
Q Consensus 63 ~~~~~~l~~~~~~~~~ 78 (82)
+-.+.+|+++||-.|+
T Consensus 12 vLh~~nLtEeQrn~yI 27 (34)
T 1l6x_B 12 ALHDPNLNEEQRNAKI 27 (34)
T ss_dssp HHHCTTCCHHHHHHHH
T ss_pred HHcCCCCCHHHHHhHH
Confidence 3345677777776654
No 116
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.24 E-value=29 Score=22.82 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=7.7
Q ss_pred ccCCCCeeeh
Q psy8827 3 AYEDKGSFGE 12 (82)
Q Consensus 3 ~l~~G~~FGE 12 (82)
.+.||++||+
T Consensus 70 ~~~pgd~Fg~ 79 (264)
T 3rh3_A 70 LLDPGDYFNP 79 (264)
T ss_dssp GGCCCTTSCH
T ss_pred hcCcccccCH
Confidence 3568889888
Done!