RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8827
(82 letters)
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 90.5 bits (225), Expect = 4e-25
Identities = 36/56 (64%), Positives = 47/56 (83%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+ KKRKMYE
Sbjct: 106 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161
Score = 29.6 bits (67), Expect = 0.066
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 21 RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSL 69
R A++ A + + +I+ +R ++ + + K+L
Sbjct: 2 RRASVCAEAYN-PDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNL 49
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 88.5 bits (220), Expect = 1e-24
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
FGELA+LYN R AT+K LWA+DR+ F+ I++++ K Y
Sbjct: 87 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 139
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 89.0 bits (221), Expect = 1e-24
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
+ GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMY
Sbjct: 102 VGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 80.9 bits (199), Expect = 6e-20
Identities = 41/66 (62%), Positives = 56/66 (84%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+ KKRKMYE I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272
Query: 64 PMLKSL 69
P LKSL
Sbjct: 273 PFLKSL 278
Score = 56.3 bits (135), Expect = 3e-11
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
FGELAL+ N PRAA+ A T AMD + F++++ ++
Sbjct: 342 CFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 74.9 bits (184), Expect = 2e-18
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
SFGELAL+YN PRAAT+ ATS LWA+DR TF++I+L S+FKKR MY+ L+ ++
Sbjct: 71 SGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM 130
Query: 64 PMLKSL 69
P+LKSL
Sbjct: 131 PVLKSL 136
Score = 56.8 bits (137), Expect = 1e-11
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
+D FGE+ALL ++PR AT+ AT + + + F++++
Sbjct: 190 LKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 76.1 bits (186), Expect = 3e-18
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 8 GSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPML 66
FG+LAL+ + PRAA+I +D++ F +I+ ++ E V +L
Sbjct: 407 DDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHD-QDVLVL 465
Query: 67 KSL 69
+ +
Sbjct: 466 EKV 468
Score = 42.6 bits (99), Expect = 2e-06
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
+FGE ++L N PR ATI + L ++++ FK + K +
Sbjct: 113 LGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 73.8 bits (181), Expect = 1e-17
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
FGELA+LYN R AT+K LWA+DR+ F+ I++++ K Y + + +V
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV 162
Query: 64 PMLKSL 69
P +SL
Sbjct: 163 PTFQSL 168
Score = 61.1 bits (148), Expect = 4e-13
Identities = 15/66 (22%), Positives = 21/66 (31%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
FGE AL R A + A + +DR +FK ++ K YE
Sbjct: 227 LGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286
Query: 64 PMLKSL 69
Sbjct: 287 KYEAEA 292
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 68.9 bits (168), Expect = 7e-16
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
+ GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V
Sbjct: 103 VGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV 162
Query: 64 PMLKSL 69
+L+SL
Sbjct: 163 SILESL 168
Score = 55.4 bits (133), Expect = 4e-11
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV--LKSAFKKR-KMYEKLI 60
FGE+ALL N P+AAT+ A +DR F++++ K+ + Y +
Sbjct: 227 LGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFV 286
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 69.0 bits (168), Expect = 1e-15
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
+ GSFGELAL+Y PRAAT+KA + LW +DR ++++I++ S +KRKMYE+ + V
Sbjct: 194 ISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV 253
Query: 64 PMLKSL 69
+L+SL
Sbjct: 254 SILESL 259
Score = 57.8 bits (139), Expect = 9e-12
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV--LKSAFKKR-KMYEKLI 60
FGE+ALL N PRAAT+ A +DR F++++ K+ + Y I
Sbjct: 318 LGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 55.5 bits (134), Expect = 9e-12
Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 4 YEDKGSFGELALLYNMPRAATIKATSTGS-LWAMDRKTFKQIV 45
SFG L ++ + ++ + +I+
Sbjct: 81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 48.8 bits (117), Expect = 3e-09
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
FGE+AL+ PR+AT+ A +T SL ++ F+ + S +
Sbjct: 79 FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTA 128
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 42.4 bits (100), Expect = 1e-06
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
GE++++ MPR+A+ A+ + R Q++ K+ +L+
Sbjct: 114 IGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 40.4 bits (94), Expect = 1e-05
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
GE+ALL + PR+AT+ + W R F +V +R +
Sbjct: 87 VGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLR 133
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 38.4 bits (90), Expect = 3e-05
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
FG +L+ ++ +AT + ++ +++
Sbjct: 84 FGVSSLIKPYHYTSSARATKPVRVVDINGARLREMS 119
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 37.6 bits (88), Expect = 6e-05
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
GEL+L PR AT A + L A+ + +
Sbjct: 80 IGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNV 117
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 36.9 bits (86), Expect = 2e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 7 KGS-FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQI 44
GS FGE+ LL R A+++A + L+++ F ++
Sbjct: 138 DGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 36.5 bits (85), Expect = 3e-04
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 7 KGS-FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV-----LKSAFKK--RKMYEK 58
GS FGE+ LL R A++K + +L+++ + F Q++ ++ ++ + +
Sbjct: 138 DGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLTR 197
Query: 59 L 59
+
Sbjct: 198 I 198
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 35.7 bits (83), Expect = 4e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
GE A+L + R+A+++A + + R+ F+ I+ +
Sbjct: 81 VGETAVLAHQERSASVRALTPVRTLMLHREHFELILRR 118
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48
FGE+AL+ PR+AT+ A +T SL ++ F+ + S
Sbjct: 296 FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 334
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
FGEL++ PR ++ + +MDR + +
Sbjct: 81 FGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIAD 118
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
FGE++LL R+A+ A L A+ R+ + ++ +
Sbjct: 74 FGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRR 111
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 32.6 bits (75), Expect = 0.007
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
FGE L N P + +A + + + F ++ +
Sbjct: 86 FGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRR 123
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 32.5 bits (73), Expect = 0.007
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 9 SFGELALLYNMPRAATIKAT-STGSLWAMDRKTFKQIVLKSAFKKRKMYE 57
FG+LAL+ + PRAA+I +D++ F +I+ ++ E
Sbjct: 408 DFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457
Score = 29.8 bits (66), Expect = 0.062
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 9 SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQI 44
+FGE ++L N PR ATI + L ++++ FK +
Sbjct: 118 AFGE-SILDNTPRHATIVTRESSELLRIEQEDFKAL 152
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 32.1 bits (72), Expect = 0.010
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 9 SFGELALLYNMPRAATIKATSTGS-LWAMDRKTFKQIVLKSAFKKRKMYE 57
FG+LAL+ + PRAA+I +D++ F +I+ ++ E
Sbjct: 103 DFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 152
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 31.3 bits (71), Expect = 0.012
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 10 FGELALLYNM---------PRAATIKATSTGSLWAMDRKTFKQI 44
G+ L + + T+KA + +A+ K +
Sbjct: 82 CGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 31.5 bits (72), Expect = 0.013
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 7 KGS-FGELALLYNMP--RAATIKATSTGSLWAMDRKTFKQI 44
KG FG++ A ++A + L + R +++
Sbjct: 93 KGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKV 133
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 31.1 bits (71), Expect = 0.015
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 10 FGELALLYNMPR-AATIKATSTGSLWAMDRKTFKQIVLK 47
F E + + P AT +A L+ K + + +
Sbjct: 87 FAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQD 125
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 30.7 bits (70), Expect = 0.030
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
FG ++T A + A+ + + ++
Sbjct: 85 FGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKG 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.32
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 10 FGELALLYNMPR---AATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLID 61
F EL LY IK ++ +T +++ ++ K++ + ++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSA---------ETLSELI-RTTLDAEKVFTQGLN 214
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 27.7 bits (62), Expect = 0.36
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 10 FGELALLYN--MPRAATIKATSTGSLWAMDRKTFKQIVLK 47
FG L+LL R A + L + + +Q + +
Sbjct: 95 FGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKE 134
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 27.6 bits (62), Expect = 0.40
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 10 FGELALLYNMPR-AATIKATSTGSLWAMDRKTFKQIVLK 47
F E + + P AT +A L+ K + + +
Sbjct: 84 FAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQD 122
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 25.8 bits (57), Expect = 1.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 38 RKTFKQIVLKSAFKKRKMY--EKLIDAVP-----MLKSL 69
+K F +I KS KKR ++ E++++ P M SL
Sbjct: 640 KKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSL 678
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION
pump, carboxyltransferase, lyase; 2.20A
{Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 23.9 bits (52), Expect = 7.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 6 DKGSFGELALLYNM 19
+ GS+ L L+N
Sbjct: 72 EPGSWRPLNTLFNP 85
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 23.4 bits (51), Expect = 9.4
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 36 MDRKTFKQIV----------LKSAFKKRKMYEKLID 61
+ F + L+S + K+ ++++
Sbjct: 127 IPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLN 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.135 0.391
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,160,537
Number of extensions: 51181
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 42
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)