RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8827
         (82 letters)



>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 136

 Score = 53.2 bits (127), Expect = 3e-11
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
             +  + GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMY
Sbjct: 81  ATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 136


>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 136

 Score = 52.5 bits (125), Expect = 5e-11
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
           +  Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMY
Sbjct: 81  VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 136


>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 132

 Score = 39.4 bits (91), Expect = 5e-06
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
           +        FGE+ALL N PRAAT+ A        +DR  F++++   +   ++  ++ 
Sbjct: 69  VGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 127


>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 147

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 9   SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
            FGELAL+ N PRAA+  A  T    AMD + F++++       ++     
Sbjct: 82  YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 132


>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
           and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 30.1 bits (67), Expect = 0.015
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGS-LWAMDRKTFKQIV 45
           +    +   FG+LAL+ + PRAA+I           +D++ F +I+
Sbjct: 73  VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 275,201
Number of extensions: 9522
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 7
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)