BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8828
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 4 GQLGVSPTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
G G S T+E + G G CP+C +++ ++ QL C H+F +SC+ W ++ +CP+CR
Sbjct: 1 GSSGSSGTEEHV-GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
Query: 61 ATLV 64
+L
Sbjct: 60 KSLT 63
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
C IC + F V L C H FC C+ +W R+ CP+CR +
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
C IC + F V L C H FC C+ +W R+ CP+CR +
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
C IC + F V L C H FC C+ +W R+ CP+CR +
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64
C IC D + + L C H FC+ C+ KW DR + CP+CR +
Sbjct: 18 CCICMD-GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ---TCPLCRATLVDDPAWRDGATSYFV 78
CPIC + K PV C HIFC+ C+ K ++++ CPLC+ + S V
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLV 83
Query: 79 Q 79
+
Sbjct: 84 E 84
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 4 GQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWF---DREQTCPLC 59
G G S E L V C +C + K PV + C H FC++C+T+W+ +R+ CP+C
Sbjct: 1 GSSGSSGALENL-QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 22 CPIC-HDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + L C H FC C+T+W + TCPLC+ +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ------TCPLCRA 61
CPIC + K PV C H FC +C+T ++ + CP+CR
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDR------EQTCPLCRAT 62
CPIC + P+ L C H FC++C+T + E +CP+CR +
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 22 CPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
CPIC E+ +L C H F + CV+ W + TCP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE---QTCPLCRATLVDD 66
ICPIC D + PV + C H FC C+T+ + CPLC+ ++ +
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 16 LGVGCI-CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
+G G + CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 16 LGVGCI-CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
+G G + CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 16 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDDPAWRDG 72
LG CPIC + VQ C H FC++C+ K D CP+ L+++ + D
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 60
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 9 SPTKETLLGVGCICPICHDEFKTPVQLTCC---HIFCESCVTKWFDREQTCPLCRATLVD 65
S K L + +C +C ++FK +L C H F C+ KW + + CPLC ++
Sbjct: 5 SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDDPAWRDG 72
CPIC + VQ C H FC++C+ K D CP+ L+++ + D
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 79
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
C IC F+ PV C H FCESC + F C +C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 35 LTCCHIFCESCVTKWFDREQTCPLCRA 61
L C H F CV KW +TCP+CRA
Sbjct: 42 LPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCR 60
+C IC + K C H+ C SC+T W + E Q CP CR
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCR 60
+C IC + K C H+ C SC+T W + E Q CP CR
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCR 60
+C IC + K C H+ C SC+T W + E Q CP CR
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCR 60
+C IC + K C H+ C SC+T W + E Q CP CR
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDDPAWRDG 72
CPIC + VQ C H FC++C+ K D CP+ L+++ + D
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATL 63
+C IC + K C H+ C SC+T W + E Q CP CR +
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATL 63
+C IC + K C H+ C SC+T W + E Q CP CR +
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE---QTCPLC 59
ICPIC D + PV + C H FC C+T+ + CPLC
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDDPAWRDG 72
CPIC + VQ C H FC++C+ K D CP+ L+++ + D
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCR 60
+C IC + K C H+ C SC+T W + + Q CP CR
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 19 GCICPICHDEFKTPVQLT----CCHIFCESCVTKWFDREQTCPLCRATLV 64
G C +C E + + C H F CV W TCPLCR T+V
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATL 63
+C IC + K C H+ C SC+T W + + Q CP CR +
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLV 64
CPI + K PV ++ + S + KW D +TCP + TL+
Sbjct: 11 CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLVDDPAW 69
C CH +P Q C H FCESC+ C C+ ++V D +
Sbjct: 18 CEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
IC +E + +L C H+F + CV +W + CP+CR +
Sbjct: 19 ICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
C IC PV L C H+FC CV + C LCR + +D
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 12 KETLLGVGCICPICHDEF-KTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
K T L +C +C F + C H FC++C+ ++ + + CP+C
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 12 KETLLGVGCICPICHDEF-KTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
K T L +C +C F + C H FC++C+ ++ + + CP+C
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVT-------KWFDREQTCPLC 59
CPIC + P+ L C H C +C+T + +CP+C
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 12 KETLLGVGCICPICHDEF-KTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
K T L +C +C F + C H FC++C+ ++ + + CP+C
Sbjct: 4 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 19 GCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQT------CP--------LCRATL 63
G CPI +E K PV+ C H + E + + + Q CP + ++ L
Sbjct: 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
Query: 64 VDDPAWR 70
+ D A R
Sbjct: 67 IQDEALR 73
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 21 ICPICHDEFKTPVQLT-CCHIFCESCVTKWFDREQTCPLCR 60
+C IC +T C H FC+SC+ + F CP C
Sbjct: 17 LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCN 57
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 5 QLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ--TCPLCRAT 62
QL +S +ET CIC C + P+ C H C+ C+ + F R Q +CP CR
Sbjct: 43 QLFLSKVEETF---QCIC--CQELVFRPITTVCQHNVCKDCLDRSF-RAQVFSCPACRYD 96
Query: 63 L 63
L
Sbjct: 97 L 97
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 6 LGVSPTKETLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLV 64
L V T + LL G IC + F + + C H +C C+ K+ + CP C T V
Sbjct: 13 LAVMKTIDDLLRCG----ICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT-V 67
Query: 65 DDPAWRDG 72
+P ++
Sbjct: 68 TEPDLKNN 75
>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQD|B Chain B, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+
pdb|1YQX|A Chain A, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
pdb|1YQX|B Chain B, Sinapyl Alcohol Dehydrogenase At 2.5 Angstrom Resolution
Length = 366
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 19/61 (31%)
Query: 16 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATS 75
+GVGC+ CH CESC D E CP + L + DG +
Sbjct: 98 VGVGCLVGACHS--------------CESCAN---DLENYCP--KMILTYASIYHDGTIT 138
Query: 76 Y 76
Y
Sbjct: 139 Y 139
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT-CPLCR 60
C C IC + PV L C H C+ C ++ CP CR
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR 57
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT-CPLCR 60
C IC PV+ +C H+FC C+ + + CP CR
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATL 63
C+C C + PV C H C+ C+ + F + +CP CR L
Sbjct: 81 CVC--CQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRA 61
C +C D + V + C H+ C C Q CP+CRA
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRA 51
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3LN2|A Chain A, Crystal Structure Of A Charge Engineered Human Lysozyme
Variant
pdb|3LN2|B Chain B, Crystal Structure Of A Charge Engineered Human Lysozyme
Variant
Length = 130
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 27 DEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP-------AWRD 71
++ KTP + CH+ C + + D C +VDDP AWR+
Sbjct: 66 NDGKTPGAVNACHLSCSALLQ---DNIADAVACAKRVVDDPQGIRAWVAWRN 114
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 12 KETLLGVGC----ICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLC 59
+TLLG +C C + + P Q C H +C C+ Q C C
Sbjct: 20 SKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAAC 72
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWF--DREQTCPLCRATLV 64
+C IC D V + CC + +C+ C+ E TCP C V
Sbjct: 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 CCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 36 TCCHIFCESCVTKWFDREQTCPL 58
C H F C+++W Q CPL
Sbjct: 56 VCNHAFHFHCISRWLKTRQVCPL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,580,455
Number of Sequences: 62578
Number of extensions: 85195
Number of successful extensions: 514
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 77
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)