BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8828
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
GV+ +K V IC IC EF+ P+ L C HIFCE C+T WF+RE+TCPLCR + D
Sbjct: 360 GVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDH 419
Query: 67 -PAWRDGATSYFVQIF 81
W+DGATS +QI+
Sbjct: 420 INKWKDGATSSHLQIY 435
>sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2 OS=Homo
sapiens GN=RNFT2 PE=2 SV=2
Length = 444
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
GV T + G IC IC EF+ P+ L C H+FCE C+ W DRE+TCPLCR+ VD
Sbjct: 369 GVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRSVAVDT 428
Query: 67 -PAWRDGATSYFVQIF 81
W+DGATS Q++
Sbjct: 429 LRCWKDGATSAHFQVY 444
>sp|Q5RAG4|RNFT2_PONAB RING finger and transmembrane domain-containing protein 2 OS=Pongo
abelii GN=RNFT2 PE=2 SV=1
Length = 444
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
GV T + G IC IC EF+ P+ L C H+FCE C+ W DRE+TCPL R+ VD
Sbjct: 369 GVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLSRSVAVDT 428
Query: 67 -PAWRDGATSYFVQIF 81
W+DGATS Q++
Sbjct: 429 LRCWKDGATSAHFQVY 444
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
G + + G ICPIC +FK P L C HIFCE C+ +W ++E+TCPLCR + D
Sbjct: 344 GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVITDK 403
Query: 67 -PAWRDGATSYFVQIF 81
W+DGATS +QI+
Sbjct: 404 VHKWKDGATSAHLQIY 419
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
GV T + G +C IC EF+ P+ L C H+FCE C+ W DRE+TCPLCR+ VD
Sbjct: 370 GVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLCRSVAVDT 429
Query: 67 PA-WRDGATSYFVQIF 81
W+DGATS +Q++
Sbjct: 430 LRCWKDGATSAHLQVY 445
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
G + TK V +C IC EF P+ L C H+FCE C++ WF++E+TCPLCR + +
Sbjct: 341 GAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLCRTVISNQ 400
Query: 67 P-AWRDGATSYFVQIF 81
W+DGATS ++IF
Sbjct: 401 SHKWKDGATSLQLRIF 416
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 7 GVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD- 65
GV +K + IC IC EF+ PV L C HIFCE C+T WF+RE+TCPLCR + +
Sbjct: 320 GVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC 379
Query: 66 DPAWRDGATSYFVQIF 81
W+DGATS +Q++
Sbjct: 380 INKWKDGATSSHLQMY 395
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 5 QLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64
G + TK +C IC EF P+ L C H+FCE C++ WF++E+TCPLCR TL+
Sbjct: 339 NYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCR-TLI 397
Query: 65 DDPA--WRDGATSYFVQIF 81
+ + W+DGATS ++IF
Sbjct: 398 SNHSHKWKDGATSLQLRIF 416
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 60
T E L V +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 60
T E L +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 60
T E L + +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 280 TPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 22 CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68
CP+C +EF+ L CCH+F C+ W + TCPLCRA LV P
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPG 168
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
ICPIC + PVQ C H FC +C+T+WF ++QTCP+ R+ +
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV 60
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 60
T E L + +C IC +E T + L C HIF SC+ WF R+QTCP CR
Sbjct: 274 TAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
+C +CH K PV+L C HIFC+ C+ +W R++TCP CR +
Sbjct: 19 LCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQKTCPCCRKEV 61
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 11 TKETLLGVGCICPICHDEFK---TPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
+ E L + C IC +E +P +L C H+F C+ WF R+QTCP CR +
Sbjct: 281 SAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
+C +CH K P +L C HIFC+ C+ +W R++TCP CR +
Sbjct: 19 VCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEV 61
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDREQTCPLCR 60
T E L + +C IC +E + + L C HIF SC+ WF R+QTCP CR
Sbjct: 274 TAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 11 TKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
+ + L + C IC +E +P +L C H+F C+ WF R+QTCP CR +
Sbjct: 281 SNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
C IC D +TPV C H FC C+ ++ ++E CPLC A L
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAEL 73
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 11 TKETLLGVGCICPIC-HDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 67
T E L IC IC D +L C HIF +C+ WF R+QTCP CR ++ P
Sbjct: 278 TPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTP 335
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
C IC + F V L C H FC C+ W R++ CP+CR +V +
Sbjct: 382 CIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEIVTE 426
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64
+C +CH K P +L C HIFC+ C+ +W R+ TCP CR +
Sbjct: 19 LCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVT 62
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 21 ICPICHDEF-------------KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
IC IC DE K P +L C HI SC+ W +R QTCP+CR + D+
Sbjct: 348 ICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICRLPVFDE 406
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 22 CPICHDEF-----KTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
CPIC+D+ K ++ C HIF ++C+ KW + TCPLCR
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCR 150
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68
CPIC + + P C H +C C+ W ++CP CR L P+
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131
>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC24 PE=3 SV=1
Length = 256
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
G+ CPIC EFK+PV CCH FCE C ++Q C +C
Sbjct: 201 GIPDTCPICQGEFKSPVVTQCCHYFCEKCFLAKHKKKQNCFVC 243
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT--CPLCRATLVD 65
CP+C + FK PV + C H FC SC+ K ++ + + CP CR ++ D
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITD 190
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
C IC + F V L C H FC C+ W R++ CP+CR ++ +
Sbjct: 377 CIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEILSE 421
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 11 TKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
TKE L IC IC+ + K+ V C H F C+ KW ++TCPLC L
Sbjct: 526 TKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCHCHL 578
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 6 LGVSPTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRAT 62
L P E +G G CP+C +++ ++ QL C H+F +SC+ W ++ +CP+CR +
Sbjct: 215 LPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 274
Query: 63 LV 64
L
Sbjct: 275 LT 276
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 405 CIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICR 443
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWF----DREQTCPLCRATLVDDPAWRDGATSY 76
+C ICHD P+ C H +C C+ WF +E CP CR+ + PA Y
Sbjct: 29 VCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDITTIPALNTTLQQY 88
Query: 77 F 77
Sbjct: 89 L 89
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
CPIC + + V L+C H+FC +C+ K + TCP+C+
Sbjct: 16 CPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK 54
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 22 CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68
C +C +EF+ L CCH+F C+ W TCPLCRA L+ P
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPG 194
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLC 59
C IC + F V L C H FC+ C+++W +R+ CP+C
Sbjct: 392 CSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 403 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 441
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
C IC + F V L C H FC C+ +W R+ CP+CR
Sbjct: 404 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICR 442
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 6 LGVSPTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRAT 62
L P E +G G CP+C D++ + QL C H+F + C+ W ++ +CP+CR +
Sbjct: 216 LPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKS 275
Query: 63 LV 64
L
Sbjct: 276 LT 277
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 6 LGVSPTKETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRAT 62
L P E +G G CP+C D++ + QL C H+F + C+ W ++ +CP+CR +
Sbjct: 213 LPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKS 272
Query: 63 LV 64
L
Sbjct: 273 LT 274
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT-CPLCR 60
C+CP+C + F PV L C H FC+ C + D+ CPLCR
Sbjct: 24 CVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCR 65
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
C IC + F V L C H FC C+++W R+ CP+CR
Sbjct: 405 CIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICR 443
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT--CPLCRATLVD 65
CP+C + FK PV + C H FC SC+ K ++ + + CP C+ ++ D
Sbjct: 146 CPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITD 191
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRA 61
C ICH+ F+ P+ +C H FC C+ + CP CRA
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRA 68
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 8 VSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 67
VSP + +L C +C D F PV +C H FC C+ + E CP CR++ +
Sbjct: 21 VSPLESSLR-----CQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACRSSDQELK 75
Query: 68 AWRDGATSYFVQIF 81
R+ A V+ F
Sbjct: 76 LRRNWAVQELVEAF 89
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 9 SPTKETLLGVGCI-CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATL 63
S K +G G + C +C EF+ L CCH+F CV W TCPLCRA L
Sbjct: 121 SEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180
Query: 64 V 64
V
Sbjct: 181 V 181
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 13 ETLLGVGCICPICHDEF---KTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
E +G G CP+C +++ ++ QL C H+F C+ W ++ TCP+CR +L
Sbjct: 218 EEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,196,257
Number of Sequences: 539616
Number of extensions: 1077481
Number of successful extensions: 3950
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 1141
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)