Query psy8828
Match_columns 81
No_of_seqs 175 out of 1020
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 20:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecw_A Tripartite motif-contai 99.8 1.2E-20 4E-25 97.1 6.9 75 5-79 5-85 (85)
2 2ecv_A Tripartite motif-contai 99.8 1.4E-20 4.8E-25 96.8 6.3 76 4-79 4-85 (85)
3 1t1h_A Gspef-atpub14, armadill 99.8 5.7E-21 1.9E-25 97.3 4.6 67 15-81 4-71 (78)
4 3ztg_A E3 ubiquitin-protein li 99.8 1.5E-20 5E-25 98.4 4.4 71 10-80 4-78 (92)
5 1wgm_A Ubiquitin conjugation f 99.8 4.9E-20 1.7E-24 97.6 5.5 68 14-81 17-85 (98)
6 2egp_A Tripartite motif-contai 99.8 1.5E-20 5.2E-25 95.7 3.1 67 12-78 5-78 (79)
7 2djb_A Polycomb group ring fin 99.8 1.6E-19 5.3E-24 90.7 6.6 61 9-69 5-66 (72)
8 2kr4_A Ubiquitin conjugation f 99.8 4.6E-20 1.6E-24 95.5 3.9 68 14-81 9-76 (85)
9 2kre_A Ubiquitin conjugation f 99.8 1.3E-19 4.5E-24 96.3 4.9 67 15-81 25-91 (100)
10 2y43_A E3 ubiquitin-protein li 99.8 2.1E-20 7.2E-25 99.0 0.8 67 14-80 17-84 (99)
11 2csy_A Zinc finger protein 183 99.8 4.9E-19 1.7E-23 90.7 5.5 53 12-64 8-60 (81)
12 2ysl_A Tripartite motif-contai 99.8 1.5E-18 5E-23 87.2 6.9 56 12-67 13-71 (73)
13 2ecy_A TNF receptor-associated 99.8 1E-18 3.5E-23 86.4 6.0 56 12-67 8-64 (66)
14 2yur_A Retinoblastoma-binding 99.8 8.2E-19 2.8E-23 88.6 5.8 56 10-65 6-64 (74)
15 3lrq_A E3 ubiquitin-protein li 99.8 4.1E-20 1.4E-24 98.2 -0.8 65 14-78 17-83 (100)
16 2d8t_A Dactylidin, ring finger 99.7 1.3E-18 4.5E-23 87.1 4.5 53 14-66 10-62 (71)
17 3fl2_A E3 ubiquitin-protein li 99.7 5.5E-19 1.9E-23 96.8 3.2 64 16-79 49-114 (124)
18 2ct2_A Tripartite motif protei 99.7 4.1E-18 1.4E-22 88.2 6.4 57 10-66 6-69 (88)
19 2ysj_A Tripartite motif-contai 99.7 7.4E-18 2.5E-22 82.5 6.7 49 11-59 12-63 (63)
20 2ect_A Ring finger protein 126 99.7 4.5E-18 1.5E-22 86.4 5.9 61 11-71 7-70 (78)
21 2ea6_A Ring finger protein 4; 99.7 1.8E-18 6.2E-23 85.8 4.2 54 12-65 8-68 (69)
22 3hct_A TNF receptor-associated 99.7 1.1E-18 3.8E-23 95.0 3.6 68 11-78 10-78 (118)
23 2ckl_A Polycomb group ring fin 99.7 7.6E-19 2.6E-23 94.3 2.3 65 14-78 10-79 (108)
24 3ng2_A RNF4, snurf, ring finge 99.7 2.1E-18 7.1E-23 86.1 3.3 54 16-69 7-67 (71)
25 4ayc_A E3 ubiquitin-protein li 99.7 4.5E-18 1.5E-22 94.8 3.4 50 17-66 51-100 (138)
26 1jm7_A BRCA1, breast cancer ty 99.7 8.9E-18 3E-22 90.3 4.5 63 17-79 19-84 (112)
27 1z6u_A NP95-like ring finger p 99.7 7E-18 2.4E-22 95.2 4.0 65 16-80 75-141 (150)
28 2ecj_A Tripartite motif-contai 99.7 2.4E-17 8.3E-22 79.3 5.4 49 11-59 7-58 (58)
29 2ep4_A Ring finger protein 24; 99.7 3.2E-17 1.1E-21 82.5 5.7 55 12-66 8-65 (74)
30 3l11_A E3 ubiquitin-protein li 99.7 7.8E-19 2.7E-23 95.1 -0.5 52 14-65 10-62 (115)
31 1jm7_B BARD1, BRCA1-associated 99.7 2.1E-19 7.2E-24 97.7 -3.1 65 13-79 16-81 (117)
32 2yu4_A E3 SUMO-protein ligase 99.7 5.2E-18 1.8E-22 89.2 2.2 65 16-80 4-78 (94)
33 2kiz_A E3 ubiquitin-protein li 99.7 9.6E-17 3.3E-21 79.7 5.9 53 14-66 9-64 (69)
34 2xeu_A Ring finger protein 4; 99.7 1.2E-17 4E-22 81.8 2.5 51 18-68 2-59 (64)
35 1iym_A EL5; ring-H2 finger, ub 99.7 5.6E-17 1.9E-21 77.3 4.2 48 17-64 3-54 (55)
36 2c2l_A CHIP, carboxy terminus 99.7 2.5E-17 8.6E-22 99.8 3.3 67 15-81 204-271 (281)
37 2ecn_A Ring finger protein 141 99.7 2.5E-17 8.6E-22 82.1 2.6 53 13-66 9-61 (70)
38 2ckl_B Ubiquitin ligase protei 99.7 1.4E-17 4.9E-22 95.0 1.5 62 17-78 52-116 (165)
39 3hcs_A TNF receptor-associated 99.7 3.6E-17 1.2E-21 93.7 3.1 68 10-77 9-77 (170)
40 1x4j_A Ring finger protein 38; 99.7 6.3E-17 2.1E-21 81.7 3.1 51 16-66 20-73 (75)
41 2l0b_A E3 ubiquitin-protein li 99.6 1.3E-16 4.5E-21 83.3 4.3 49 17-65 38-89 (91)
42 2ecm_A Ring finger and CHY zin 99.6 1.2E-16 4.1E-21 76.1 3.7 47 18-64 4-54 (55)
43 1g25_A CDK-activating kinase a 99.6 1.9E-16 6.6E-21 77.9 4.1 51 18-68 2-58 (65)
44 1chc_A Equine herpes virus-1 r 99.6 1.4E-16 4.9E-21 78.9 3.6 48 18-65 4-52 (68)
45 2f42_A STIP1 homology and U-bo 99.6 9.2E-17 3.2E-21 92.8 3.1 68 14-81 101-169 (179)
46 1rmd_A RAG1; V(D)J recombinati 99.6 6.6E-17 2.3E-21 87.6 2.0 54 15-68 19-73 (116)
47 4ap4_A E3 ubiquitin ligase RNF 99.6 1.4E-16 4.8E-21 87.5 3.1 52 17-68 5-63 (133)
48 3knv_A TNF receptor-associated 99.6 4E-17 1.4E-21 91.3 0.8 51 14-64 26-77 (141)
49 2ecl_A Ring-box protein 2; RNF 99.6 8.3E-16 2.8E-20 78.7 4.8 49 18-66 14-77 (81)
50 1bor_A Transcription factor PM 99.6 3.5E-16 1.2E-20 75.0 2.5 47 17-66 4-50 (56)
51 1v87_A Deltex protein 2; ring- 99.6 1.6E-15 5.6E-20 81.8 5.4 49 18-66 24-95 (114)
52 1e4u_A Transcriptional repress 99.6 3.9E-15 1.3E-19 75.8 5.9 53 15-67 7-64 (78)
53 3dpl_R Ring-box protein 1; ubi 99.5 1.6E-14 5.5E-19 77.3 4.5 47 18-64 36-100 (106)
54 3htk_C E3 SUMO-protein ligase 99.5 4.4E-15 1.5E-19 89.8 1.5 65 16-80 178-247 (267)
55 4ap4_A E3 ubiquitin ligase RNF 99.5 4.7E-15 1.6E-19 81.4 1.4 53 16-68 69-128 (133)
56 4ic3_A E3 ubiquitin-protein li 99.5 1.1E-15 3.8E-20 77.0 -1.4 46 16-65 21-67 (74)
57 2vje_A E3 ubiquitin-protein li 99.5 4.1E-14 1.4E-18 69.5 3.4 47 18-64 7-56 (64)
58 2vje_B MDM4 protein; proto-onc 99.4 5.4E-14 1.8E-18 68.8 3.0 47 18-64 6-55 (63)
59 2y1n_A E3 ubiquitin-protein li 99.4 9.9E-14 3.4E-18 87.9 4.8 49 18-66 331-380 (389)
60 2ecg_A Baculoviral IAP repeat- 99.4 2E-14 6.8E-19 72.5 0.1 45 17-65 23-68 (75)
61 2bay_A PRE-mRNA splicing facto 99.4 1.8E-13 6E-18 66.6 2.4 54 19-72 3-57 (61)
62 2ea5_A Cell growth regulator w 99.4 8.9E-13 3E-17 65.4 4.4 48 14-65 10-58 (68)
63 2d8s_A Cellular modulator of i 99.4 1.1E-12 3.7E-17 67.0 4.4 50 17-66 13-71 (80)
64 4a0k_B E3 ubiquitin-protein li 99.3 1.4E-13 4.6E-18 74.8 0.2 48 18-65 47-112 (117)
65 2ct0_A Non-SMC element 1 homol 99.3 1.9E-11 6.5E-16 61.4 6.7 51 15-65 11-64 (74)
66 2yho_A E3 ubiquitin-protein li 99.2 1E-12 3.6E-17 66.8 0.8 47 15-65 14-61 (79)
67 1wim_A KIAA0161 protein; ring 99.2 1.7E-11 5.7E-16 64.0 2.8 48 18-65 4-66 (94)
68 3t6p_A Baculoviral IAP repeat- 99.2 5.4E-12 1.9E-16 79.1 1.0 45 17-65 293-338 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.9 2.9E-09 9.9E-14 51.4 4.5 47 18-64 5-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.5E-09 8.7E-14 67.0 1.3 49 17-65 306-373 (381)
71 3vk6_A E3 ubiquitin-protein li 98.7 1.7E-08 5.7E-13 52.9 3.7 45 21-65 3-49 (101)
72 3m62_A Ubiquitin conjugation f 98.2 7.3E-07 2.5E-11 62.0 3.4 67 15-81 887-954 (968)
73 3nw0_A Non-structural maintena 98.1 6E-06 2.1E-10 49.5 4.9 47 19-65 180-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 97.7 1.9E-05 6.6E-10 41.2 2.7 32 18-49 2-36 (101)
75 2ko5_A Ring finger protein Z; 97.5 0.00015 5.2E-09 37.5 3.5 46 19-66 28-74 (99)
76 2cs3_A Protein C14ORF4, MY039 96.8 0.0052 1.8E-07 30.9 5.4 35 17-51 13-51 (93)
77 2lri_C Autoimmune regulator; Z 95.9 0.019 6.5E-07 27.7 4.3 45 17-63 10-60 (66)
78 3i2d_A E3 SUMO-protein ligase 95.9 0.008 2.8E-07 38.2 3.5 61 18-78 248-313 (371)
79 4fo9_A E3 SUMO-protein ligase 95.7 0.01 3.6E-07 37.6 3.5 61 18-78 214-279 (360)
80 1weo_A Cellulose synthase, cat 94.4 0.22 7.6E-06 25.5 6.2 47 18-64 15-69 (93)
81 1wil_A KIAA1045 protein; ring 93.7 0.31 1.1E-05 24.7 5.2 35 14-49 10-47 (89)
82 2l5u_A Chromodomain-helicase-D 92.4 0.15 5.2E-06 24.0 2.9 43 17-61 9-57 (61)
83 1f62_A Transcription factor WS 92.1 0.12 4E-06 23.3 2.2 41 21-61 2-49 (51)
84 2k16_A Transcription initiatio 91.6 0.067 2.3E-06 26.2 1.1 48 17-64 16-70 (75)
85 3t7l_A Zinc finger FYVE domain 91.1 0.17 5.9E-06 25.7 2.4 30 19-48 20-53 (90)
86 3mjh_B Early endosome antigen 90.9 0.016 5.6E-07 24.4 -1.3 16 18-33 4-19 (34)
87 1m3v_A FLIN4, fusion of the LI 90.6 0.34 1.1E-05 25.7 3.4 47 20-66 33-82 (122)
88 1wen_A Inhibitor of growth fam 89.7 0.9 3.1E-05 22.0 4.2 44 17-63 14-66 (71)
89 1vfy_A Phosphatidylinositol-3- 89.6 0.25 8.6E-06 24.0 2.2 29 19-47 11-43 (73)
90 1y02_A CARP2, FYVE-ring finger 89.1 0.14 4.8E-06 27.6 1.1 43 18-60 18-64 (120)
91 1x62_A C-terminal LIM domain p 89.0 0.69 2.4E-05 22.4 3.6 39 18-64 14-52 (79)
92 2o35_A Hypothetical protein DU 88.6 0.2 6.9E-06 26.1 1.4 12 40-51 42-53 (105)
93 3fyb_A Protein of unknown func 88.6 0.21 7E-06 26.0 1.4 12 40-51 41-52 (104)
94 1mm2_A MI2-beta; PHD, zinc fin 88.1 0.17 5.8E-06 23.8 0.9 44 17-62 7-56 (61)
95 3o70_A PHD finger protein 13; 88.0 0.23 7.9E-06 23.9 1.4 59 1-60 1-65 (68)
96 1wem_A Death associated transc 88.0 1.4 4.7E-05 21.4 4.3 46 17-63 14-71 (76)
97 1wev_A Riken cDNA 1110020M19; 87.9 0.14 4.8E-06 26.0 0.6 47 17-63 14-73 (88)
98 2e6r_A Jumonji/ARID domain-con 87.2 0.044 1.5E-06 28.1 -1.6 46 16-61 13-65 (92)
99 2lv9_A Histone-lysine N-methyl 87.0 0.19 6.6E-06 25.9 0.8 44 18-62 27-76 (98)
100 1x64_A Alpha-actinin-2 associa 86.6 1.9 6.3E-05 21.3 4.8 41 18-66 24-64 (89)
101 1z2q_A LM5-1; membrane protein 86.3 0.43 1.5E-05 23.8 1.9 31 18-48 20-54 (84)
102 2yw8_A RUN and FYVE domain-con 86.2 0.44 1.5E-05 23.7 1.9 30 19-48 19-52 (82)
103 2xjy_A Rhombotin-2; oncoprotei 85.6 0.81 2.8E-05 24.3 2.9 48 18-65 28-78 (131)
104 1joc_A EEA1, early endosomal a 85.4 0.35 1.2E-05 26.1 1.3 28 20-47 70-101 (125)
105 3v43_A Histone acetyltransfera 85.1 2.8 9.5E-05 21.9 5.0 43 18-60 4-62 (112)
106 1x4u_A Zinc finger, FYVE domai 85.1 0.47 1.6E-05 23.7 1.6 29 19-47 14-46 (84)
107 3zyq_A Hepatocyte growth facto 84.3 0.66 2.3E-05 27.4 2.3 31 17-47 162-196 (226)
108 1wfk_A Zinc finger, FYVE domai 84.2 0.59 2E-05 23.6 1.8 29 19-47 9-41 (88)
109 1wep_A PHF8; structural genomi 83.9 2.6 8.8E-05 20.6 4.5 47 18-65 11-66 (79)
110 1dvp_A HRS, hepatocyte growth 83.8 0.55 1.9E-05 27.5 1.8 31 17-47 159-193 (220)
111 2lbm_A Transcriptional regulat 83.7 2.6 8.9E-05 23.3 4.4 42 18-61 62-116 (142)
112 2cor_A Pinch protein; LIM doma 83.3 2 6.8E-05 20.8 3.5 40 19-66 15-54 (79)
113 1fp0_A KAP-1 corepressor; PHD 83.1 1.4 4.7E-05 22.4 2.9 47 14-62 20-72 (88)
114 1z60_A TFIIH basal transcripti 82.9 1.2 4E-05 21.0 2.4 40 20-59 16-58 (59)
115 3ql9_A Transcriptional regulat 82.6 2.5 8.6E-05 23.0 4.0 44 18-61 56-110 (129)
116 2ku3_A Bromodomain-containing 82.2 2.5 8.6E-05 20.4 3.5 47 14-60 11-64 (71)
117 2gmg_A Hypothetical protein PF 81.6 0.52 1.8E-05 24.8 1.0 31 31-66 67-97 (105)
118 2ysm_A Myeloid/lymphoid or mix 81.1 0.39 1.3E-05 25.1 0.4 42 18-59 6-54 (111)
119 2rgt_A Fusion of LIM/homeobox 81.0 4 0.00014 22.7 4.6 46 18-65 32-77 (169)
120 2co8_A NEDD9 interacting prote 80.7 3.5 0.00012 20.0 4.0 43 16-66 12-55 (82)
121 2pv0_B DNA (cytosine-5)-methyl 80.2 2.7 9.2E-05 27.0 4.0 42 19-62 93-148 (386)
122 1weu_A Inhibitor of growth fam 78.9 2.8 9.4E-05 21.4 3.2 44 18-63 35-86 (91)
123 2yql_A PHD finger protein 21A; 78.9 0.11 3.9E-06 23.9 -1.9 40 18-59 8-53 (56)
124 2jrp_A Putative cytoplasmic pr 78.9 0.038 1.3E-06 27.8 -3.7 11 20-30 3-13 (81)
125 1rut_X Flinc4, fusion protein 78.6 0.51 1.7E-05 26.9 0.4 47 19-65 32-81 (188)
126 2xqn_T Testin, TESS; metal-bin 78.5 1.9 6.6E-05 22.6 2.7 45 19-65 30-75 (126)
127 3asl_A E3 ubiquitin-protein li 78.4 0.4 1.4E-05 23.2 -0.1 41 21-61 20-68 (70)
128 3o36_A Transcription intermedi 78.2 0.58 2E-05 26.6 0.5 44 18-63 3-52 (184)
129 2l43_A N-teminal domain from h 77.8 4.5 0.00015 20.3 3.8 49 15-63 21-76 (88)
130 2d8z_A Four and A half LIM dom 77.7 3 0.0001 19.4 3.0 36 21-64 7-42 (70)
131 1wg2_A Zinc finger (AN1-like) 77.7 4.4 0.00015 19.3 3.8 27 18-44 14-41 (64)
132 3a1b_A DNA (cytosine-5)-methyl 77.5 1.6 5.4E-05 24.6 2.2 41 19-62 79-134 (159)
133 2e6s_A E3 ubiquitin-protein li 77.2 0.41 1.4E-05 23.7 -0.3 41 21-61 28-76 (77)
134 2dar_A PDZ and LIM domain prot 76.9 3.7 0.00013 20.2 3.3 39 19-65 25-63 (90)
135 1wyh_A SLIM 2, skeletal muscle 76.9 2.7 9.3E-05 19.6 2.7 37 21-65 7-45 (72)
136 1wig_A KIAA1808 protein; LIM d 76.2 2.7 9.3E-05 19.9 2.6 36 21-64 7-42 (73)
137 3lqh_A Histone-lysine N-methyl 75.3 0.95 3.2E-05 26.0 0.9 45 20-64 3-65 (183)
138 1nyp_A Pinch protein; LIM doma 75.0 2 6.7E-05 19.8 1.9 38 20-65 6-43 (66)
139 3shb_A E3 ubiquitin-protein li 74.9 0.35 1.2E-05 23.9 -0.9 41 21-61 28-76 (77)
140 3ttc_A HYPF, transcriptional r 74.8 1.9 6.6E-05 29.5 2.4 48 16-63 14-99 (657)
141 1wd2_A Ariadne-1 protein homol 74.7 0.29 9.9E-06 23.0 -1.2 32 20-51 7-46 (60)
142 1x4w_A Hypothetical protein FL 74.3 2 6.9E-05 20.7 1.8 28 17-44 13-44 (67)
143 1x63_A Skeletal muscle LIM-pro 73.9 4.1 0.00014 19.5 3.0 39 20-66 16-56 (82)
144 3u5n_A E3 ubiquitin-protein li 73.7 0.76 2.6E-05 26.7 0.2 44 18-63 6-55 (207)
145 2fiy_A Protein FDHE homolog; F 73.7 0.23 7.7E-06 30.9 -2.1 46 17-62 180-231 (309)
146 4g9i_A Hydrogenase maturation 73.4 2.9 9.8E-05 29.2 3.0 47 17-63 104-188 (772)
147 2jtn_A LIM domain-binding prot 73.4 3.7 0.00013 23.1 3.1 44 20-65 88-131 (182)
148 2d8x_A Protein pinch; LIM doma 73.3 1.7 5.7E-05 20.3 1.4 37 21-65 7-43 (70)
149 2ro1_A Transcription intermedi 73.1 0.99 3.4E-05 25.9 0.6 44 20-63 3-50 (189)
150 2jmo_A Parkin; IBR, E3 ligase, 72.9 0.19 6.5E-06 25.0 -2.2 16 36-51 55-70 (80)
151 1x6a_A LIMK-2, LIM domain kina 71.8 3 0.0001 20.0 2.2 36 21-64 17-52 (81)
152 1xwh_A Autoimmune regulator; P 71.7 0.37 1.3E-05 22.9 -1.2 43 18-62 7-55 (66)
153 1x4l_A Skeletal muscle LIM-pro 71.3 4.2 0.00015 19.0 2.6 36 21-64 7-46 (72)
154 2d8y_A Eplin protein; LIM doma 70.4 8 0.00027 19.0 4.1 39 19-65 15-54 (91)
155 2vpb_A Hpygo1, pygopus homolog 70.4 3.7 0.00013 19.4 2.2 31 17-47 6-41 (65)
156 1v6g_A Actin binding LIM prote 70.3 2.7 9.2E-05 20.2 1.8 37 21-65 17-53 (81)
157 2cuq_A Four and A half LIM dom 69.6 4.7 0.00016 19.2 2.6 37 20-64 16-52 (80)
158 2puy_A PHD finger protein 21A; 69.5 0.46 1.6E-05 22.1 -1.1 42 18-61 4-51 (60)
159 2cu8_A Cysteine-rich protein 2 69.5 2.8 9.7E-05 19.9 1.8 38 20-65 10-48 (76)
160 2yt5_A Metal-response element- 69.1 2.3 7.7E-05 19.9 1.3 46 17-62 4-61 (66)
161 2dj7_A Actin-binding LIM prote 68.6 7.5 0.00026 18.7 3.2 40 18-65 14-54 (80)
162 1x68_A FHL5 protein; four-and- 67.9 3.5 0.00012 19.5 1.9 37 20-64 6-46 (76)
163 2jne_A Hypothetical protein YF 67.6 0.087 3E-06 27.4 -4.1 42 19-65 32-73 (101)
164 2dlo_A Thyroid receptor-intera 67.5 2.8 9.7E-05 20.2 1.5 38 20-65 16-53 (81)
165 1x4k_A Skeletal muscle LIM-pro 67.3 3.9 0.00013 19.0 2.0 37 21-65 7-45 (72)
166 1we9_A PHD finger family prote 67.1 2.4 8.3E-05 19.7 1.2 45 17-61 4-57 (64)
167 2cup_A Skeletal muscle LIM-pro 66.1 2.3 7.7E-05 21.4 1.0 45 19-65 33-78 (101)
168 3mpx_A FYVE, rhogef and PH dom 65.6 1.3 4.4E-05 28.2 0.0 31 19-49 375-409 (434)
169 1zbd_B Rabphilin-3A; G protein 65.4 1.9 6.5E-05 23.5 0.7 30 18-47 54-88 (134)
170 1x61_A Thyroid receptor intera 64.8 9.3 0.00032 17.7 4.2 31 20-50 34-65 (72)
171 3ask_A E3 ubiquitin-protein li 64.4 0.98 3.4E-05 26.9 -0.6 41 21-61 176-224 (226)
172 1wff_A Riken cDNA 2810002D23 p 64.3 12 0.00042 18.8 3.6 26 19-44 25-52 (85)
173 1wfl_A Zinc finger protein 216 64.3 11 0.00039 18.4 3.5 25 19-43 25-50 (74)
174 2l4z_A DNA endonuclease RBBP8, 64.1 6.4 0.00022 20.8 2.6 38 19-64 61-99 (123)
175 1x3h_A Leupaxin; paxillin fami 62.8 3.7 0.00013 19.6 1.4 37 21-65 17-53 (80)
176 2ehe_A Four and A half LIM dom 62.2 7.9 0.00027 18.5 2.6 38 20-65 16-55 (82)
177 1wfh_A Zinc finger (AN1-like) 60.9 12 0.00042 17.7 3.7 27 18-44 14-41 (64)
178 1iml_A CRIP, cysteine rich int 60.6 3.8 0.00013 19.4 1.2 43 18-62 26-70 (76)
179 2jvx_A NF-kappa-B essential mo 60.0 1.1 3.7E-05 17.9 -0.7 10 55-64 5-14 (28)
180 1wee_A PHD finger family prote 59.4 5.3 0.00018 19.0 1.6 45 16-61 13-65 (72)
181 2egq_A FHL1 protein; LIM domai 58.4 6.3 0.00021 18.6 1.8 38 20-65 16-58 (77)
182 3vth_A Hydrogenase maturation 57.8 8.9 0.00031 26.8 3.0 47 17-63 109-193 (761)
183 2zet_C Melanophilin; complex, 57.6 5.3 0.00018 22.3 1.6 29 18-46 67-100 (153)
184 1j2o_A FLIN2, fusion of rhombo 56.7 12 0.00042 19.2 2.9 36 18-53 29-67 (114)
185 2d8v_A Zinc finger FYVE domain 55.9 7.2 0.00025 18.7 1.7 31 19-50 8-39 (67)
186 1x4v_A Hypothetical protein LO 55.2 16 0.00054 17.2 3.7 37 18-57 11-50 (63)
187 2ct7_A Ring finger protein 31; 53.9 0.62 2.1E-05 23.3 -2.4 28 22-49 28-61 (86)
188 2l3k_A Rhombotin-2, linker, LI 53.0 9.2 0.00031 20.0 2.0 34 18-51 35-70 (123)
189 2cur_A Skeletal muscle LIM-pro 52.0 17 0.00058 16.6 3.5 10 21-30 7-16 (69)
190 2kgg_A Histone demethylase jar 51.6 14 0.00048 16.3 2.3 40 21-60 4-52 (52)
191 1wfp_A Zinc finger (AN1-like) 51.5 21 0.00071 17.5 4.2 28 17-44 23-51 (74)
192 2iyb_E Testin, TESS, TES; LIM 51.4 5.9 0.0002 18.2 1.0 36 21-64 4-43 (65)
193 1g47_A Pinch protein; LIM doma 50.1 13 0.00046 17.3 2.2 39 19-65 11-51 (77)
194 1zfo_A LAsp-1; LIM domain, zin 50.0 6.5 0.00022 15.5 0.9 25 21-45 5-30 (31)
195 2ffw_A Midline-1; B-BOX, ring 49.9 16 0.00053 17.7 2.4 31 18-48 29-62 (78)
196 1b8t_A Protein (CRP1); LIM dom 49.5 24 0.00083 19.8 3.6 34 18-51 33-67 (192)
197 1wew_A DNA-binding family prot 49.4 22 0.00075 17.1 4.3 44 18-62 15-72 (78)
198 2ee8_A Protein ODD-skipped-rel 48.1 22 0.00075 17.2 3.0 51 15-65 13-85 (106)
199 4gut_A Lysine-specific histone 47.4 15 0.00051 25.6 2.8 32 20-51 14-55 (776)
200 1l8d_A DNA double-strand break 45.7 5.3 0.00018 20.6 0.3 13 53-65 47-59 (112)
201 2jmi_A Protein YNG1, ING1 homo 43.1 11 0.00039 19.0 1.3 44 17-61 24-75 (90)
202 2lv2_A Insulinoma-associated p 41.8 20 0.00068 17.5 2.1 39 17-66 26-69 (85)
203 1wfe_A Riken cDNA 2310008M20 p 40.3 26 0.00091 17.5 2.4 27 18-44 24-53 (86)
204 3vhs_A ATPase wrnip1; zinc fin 40.2 10 0.00035 14.6 0.7 11 55-65 8-18 (29)
205 3f6q_B LIM and senescent cell 39.9 16 0.00054 16.7 1.5 39 19-65 11-51 (72)
206 3c5k_A HD6, histone deacetylas 39.7 18 0.00061 18.9 1.8 26 19-44 24-49 (109)
207 6rxn_A Rubredoxin; electron tr 38.1 15 0.00052 16.1 1.2 14 15-28 26-39 (46)
208 1a7i_A QCRP2 (LIM1); LIM domai 37.8 4.5 0.00015 19.4 -0.7 10 21-30 9-18 (81)
209 2ctu_A Zinc finger protein 483 37.7 7.1 0.00024 17.5 0.1 18 18-35 17-34 (73)
210 2xb1_A Pygopus homolog 2, B-ce 36.0 16 0.00054 18.8 1.2 45 19-63 3-62 (105)
211 2das_A Zinc finger MYM-type pr 35.7 38 0.0013 15.9 4.9 37 15-51 16-57 (62)
212 2kkx_A Uncharacterized protein 35.5 49 0.0017 17.2 3.0 57 10-66 18-80 (102)
213 1e8j_A Rubredoxin; iron-sulfur 33.8 18 0.00062 16.3 1.1 14 15-28 32-45 (52)
214 4rxn_A Rubredoxin; electron tr 33.1 20 0.00068 16.3 1.2 14 15-28 32-45 (54)
215 1yk4_A Rubredoxin, RD; electro 32.4 21 0.00071 16.0 1.2 14 15-28 31-44 (52)
216 2jyp_A Aragonite protein AP7; 32.4 30 0.001 13.9 1.5 25 18-42 8-32 (36)
217 1lv3_A Hypothetical protein YA 32.1 12 0.00041 18.0 0.3 11 54-64 10-20 (68)
218 1erd_A Pheromone ER-2; NMR {Eu 32.0 5.9 0.0002 16.4 -0.7 15 35-49 10-24 (40)
219 2csz_A Synaptotagmin-like prot 31.4 15 0.00051 18.1 0.6 30 17-46 23-57 (76)
220 4gne_A Histone-lysine N-methyl 31.1 12 0.0004 19.6 0.2 42 14-60 10-60 (107)
221 2a20_A Regulating synaptic mem 30.9 30 0.001 16.2 1.6 13 16-28 6-18 (62)
222 2lce_A B-cell lymphoma 6 prote 30.7 32 0.0011 15.4 1.8 38 17-65 15-57 (74)
223 1r79_A Diacylglycerol kinase, 30.6 55 0.0019 16.2 3.1 31 19-49 38-74 (84)
224 2v3b_B Rubredoxin 2, rubredoxi 30.5 22 0.00076 16.1 1.1 14 15-28 32-45 (55)
225 2pk7_A Uncharacterized protein 30.1 13 0.00045 17.8 0.3 12 53-64 8-19 (69)
226 1dx8_A Rubredoxin; electron tr 28.8 25 0.00086 16.8 1.2 14 15-28 36-49 (70)
227 1loi_A Cyclic 3',5'-AMP specif 28.8 1.9 6.3E-05 16.3 -2.3 10 41-50 7-16 (26)
228 1ard_A Yeast transcription fac 28.5 26 0.00089 11.9 1.1 10 21-30 4-13 (29)
229 2kdx_A HYPA, hydrogenase/ureas 28.3 25 0.00086 18.3 1.3 22 36-63 78-100 (119)
230 2lcq_A Putative toxin VAPC6; P 28.3 10 0.00035 20.9 -0.3 10 54-63 149-158 (165)
231 2lq6_A Bromodomain-containing 27.6 63 0.0022 16.0 3.7 33 17-49 15-51 (87)
232 2hf1_A Tetraacyldisaccharide-1 27.3 23 0.00077 16.9 0.9 11 54-64 9-19 (68)
233 2jny_A Uncharacterized BCR; st 27.3 30 0.001 16.4 1.3 18 13-30 4-21 (67)
234 2kn9_A Rubredoxin; metalloprot 27.2 26 0.00088 17.4 1.1 14 15-28 56-69 (81)
235 2apo_B Ribosome biogenesis pro 27.1 55 0.0019 15.2 2.2 14 53-66 18-31 (60)
236 2kwj_A Zinc finger protein DPF 27.0 17 0.00058 18.9 0.4 40 21-60 60-106 (114)
237 2uzg_A Ubiquitin carboxyl-term 26.5 46 0.0016 16.8 2.0 26 19-44 25-53 (97)
238 2m0e_A Zinc finger and BTB dom 25.8 30 0.001 11.6 2.0 13 54-66 3-15 (29)
239 2jr6_A UPF0434 protein NMA0874 25.2 36 0.0012 16.2 1.3 16 15-30 4-19 (68)
240 2ri7_A Nucleosome-remodeling f 25.2 35 0.0012 18.8 1.6 44 18-62 7-59 (174)
241 2k5c_A Uncharacterized protein 24.8 22 0.00074 17.9 0.5 11 54-64 9-19 (95)
242 2kpi_A Uncharacterized protein 24.8 35 0.0012 15.5 1.2 17 14-30 5-21 (56)
243 2cot_A Zinc finger protein 435 24.5 59 0.002 14.6 3.0 38 17-65 16-58 (77)
244 2lvu_A Zinc finger and BTB dom 30.1 16 0.00055 12.3 0.0 6 22-27 5-10 (26)
245 2lvr_A Zinc finger and BTB dom 30.1 16 0.00055 12.7 0.0 7 56-62 6-12 (30)
246 1p7a_A BF3, BKLF, kruppel-like 24.1 39 0.0013 12.4 1.4 13 19-31 11-23 (37)
247 2kvf_A Zinc finger and BTB dom 24.1 26 0.0009 11.9 0.6 6 56-61 6-11 (28)
248 2kvh_A Zinc finger and BTB dom 23.9 25 0.00086 11.9 0.6 7 56-62 6-12 (27)
249 2elr_A Zinc finger protein 406 23.8 39 0.0013 12.3 1.5 13 19-31 9-21 (36)
250 3jyw_9 60S ribosomal protein L 23.5 65 0.0022 15.6 2.1 11 52-62 25-35 (72)
251 1znf_A 31ST zinc finger from X 23.4 33 0.0011 11.3 1.1 7 56-62 4-10 (27)
252 2enh_A Zinc finger protein 28 22.3 31 0.0011 13.7 0.8 15 18-32 11-25 (46)
253 2yte_A Zinc finger protein 473 22.1 47 0.0016 12.6 1.5 13 19-31 10-22 (42)
254 3j21_i 50S ribosomal protein L 22.1 71 0.0024 15.9 2.1 11 52-62 34-44 (83)
255 1s24_A Rubredoxin 2; electron 21.8 38 0.0013 17.0 1.1 14 15-28 64-77 (87)
256 1yuz_A Nigerythrin; rubrythrin 21.7 31 0.0011 19.9 0.9 9 54-62 187-195 (202)
257 2e5r_A Dystrobrevin alpha; ZZ 21.6 74 0.0025 14.7 3.5 29 20-48 12-44 (63)
258 2lvt_A Zinc finger and BTB dom 27.2 20 0.00067 12.4 0.0 9 21-29 4-12 (29)
259 2m0d_A Zinc finger and BTB dom 21.5 31 0.001 11.7 0.6 7 21-27 5-11 (30)
260 3d00_A Tungsten formylmethanof 21.4 21 0.00072 20.5 0.1 25 18-47 162-186 (191)
261 2js4_A UPF0434 protein BB2007; 21.1 40 0.0014 16.1 1.1 16 15-30 4-19 (70)
262 1rik_A E6APC1 peptide; E6-bind 20.7 38 0.0013 11.4 0.8 11 55-65 4-14 (29)
263 3i1m_R 30S ribosomal protein S 20.5 24 0.00081 17.2 0.2 14 51-64 6-19 (75)
264 1wii_A Hypothetical UPF0222 pr 20.2 43 0.0015 16.7 1.1 10 53-62 23-32 (85)
265 2epr_A POZ-, at HOOK-, and zin 20.1 44 0.0015 13.4 1.1 16 17-32 10-25 (48)
266 1klr_A Zinc finger Y-chromosom 20.1 42 0.0014 11.2 2.0 13 54-66 3-15 (30)
No 1
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.2e-20 Score=97.13 Aligned_cols=75 Identities=25% Similarity=0.599 Sum_probs=62.0
Q ss_pred CCCCCCCccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC------CCCCCCCCCCCCCCccccCcccchhh
Q psy8828 5 QLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR------EQTCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 5 ~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~------~~~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
+.+.+....+.+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.|+..+......++..+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 5 SSGMASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCCCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred cccchHHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 334444555667788999999999999999999999999999999986 67999999999877777777777665
Q ss_pred h
Q psy8828 79 Q 79 (81)
Q Consensus 79 ~ 79 (81)
+
T Consensus 85 e 85 (85)
T 2ecw_A 85 E 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=96.80 Aligned_cols=76 Identities=26% Similarity=0.643 Sum_probs=62.5
Q ss_pred CCCCCCCCccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC------CCCCCCCCCCCCCCccccCcccchh
Q psy8828 4 GQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR------EQTCPLCRATLVDDPAWRDGATSYF 77 (81)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~------~~~CP~C~~~~~~~~~~~~~~~~~~ 77 (81)
++.+.+......+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.|+..+......++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 4 GSSGMASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred ccccchHHHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 3344444555667788999999999999999999999999999999876 6899999999987777777777766
Q ss_pred hh
Q psy8828 78 VQ 79 (81)
Q Consensus 78 ~~ 79 (81)
++
T Consensus 84 ve 85 (85)
T 2ecv_A 84 VE 85 (85)
T ss_dssp CC
T ss_pred hC
Confidence 53
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.83 E-value=5.7e-21 Score=97.26 Aligned_cols=67 Identities=22% Similarity=0.434 Sum_probs=58.9
Q ss_pred cCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC-CCCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~-~~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
...+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||.|+..+......+|..+.+.++.|
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 35678899999999999999999999999999999986 78999999999877777888888777654
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=98.35 Aligned_cols=71 Identities=23% Similarity=0.490 Sum_probs=57.1
Q ss_pred CCccccCCCCccccccccCCCCCeecC-CCCcccHHHHHHHHhC--CCCCCCCCCCCC-CCccccCcccchhhhc
Q psy8828 10 PTKETLLGVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDR--EQTCPLCRATLV-DDPAWRDGATSYFVQI 80 (81)
Q Consensus 10 ~~~~~~~~~~~~C~iC~~~~~~p~~l~-C~h~fc~~Cl~~~~~~--~~~CP~C~~~~~-~~~~~~~~~~~~~~~~ 80 (81)
.+....+.+.+.|+||++.+.+|++++ |||+||..||.+|+.. ...||.|+..+. ......|..+.++++.
T Consensus 4 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 78 (92)
T 3ztg_A 4 GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNN 78 (92)
T ss_dssp SSSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHH
T ss_pred CcccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHH
Confidence 344556678899999999999999999 9999999999999874 369999999973 4456667666666553
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.81 E-value=4.9e-20 Score=97.61 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=60.5
Q ss_pred ccCCCCccccccccCCCCCeecCCC-CcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~-h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
....+.+.||||++++.+|++++|| |+||+.||.+|+.....||+|+.++....+.+|..+.+.++.|
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 3456789999999999999999999 9999999999999888999999999888888888888777654
No 6
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=95.74 Aligned_cols=67 Identities=22% Similarity=0.549 Sum_probs=57.2
Q ss_pred ccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC-------CCCCCCCCCCCCCCccccCcccchhh
Q psy8828 12 KETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-------EQTCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~-------~~~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
..+.+++.+.|+||++.+.+|+.++|||+||..|+.+|+.. ...||.||..+.......|..+.+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 34456678899999999999999999999999999999886 57899999999877777777776665
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=90.74 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=52.4
Q ss_pred CCCccccCCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccc
Q psy8828 9 SPTKETLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 69 (81)
Q Consensus 9 ~~~~~~~~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~ 69 (81)
+....+.+++.+.|+||++.+.+|+.+ +|||+||..||.+|+..+..||+||+.+...+..
T Consensus 5 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 5 SSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred chhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 344555667889999999999999987 9999999999999999889999999998765443
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.79 E-value=4.6e-20 Score=95.49 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=60.1
Q ss_pred ccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
....+.+.|+||++.+.+|++++|||+||+.||.+|+....+||+|+.++....+.+|..+.+.++.|
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999888999999999877788888887777654
No 9
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.79 E-value=1.3e-19 Score=96.29 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=60.0
Q ss_pred cCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
...+.+.||||++++.+|++++|||+||+.||.+|+.....||.|+.++....+.+|..+.+.++.|
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 4467899999999999999999999999999999999889999999999888888888887777654
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.1e-20 Score=98.98 Aligned_cols=67 Identities=21% Similarity=0.542 Sum_probs=56.6
Q ss_pred ccCCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhhc
Q psy8828 14 TLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQI 80 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~ 80 (81)
+.+.+.+.|+||++.+.+|+.+ +|||+||..|+.+|+..+..||.|+..+.......|..+.++++.
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKS 84 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHH
Confidence 3345678999999999999988 899999999999999988999999999887666667766666553
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=90.68 Aligned_cols=53 Identities=30% Similarity=0.666 Sum_probs=47.7
Q ss_pred ccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 12 KETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
..+...+.+.|+||++.+.+|++++|||+||..|+.+|+.....||+|+..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 33455667899999999999999999999999999999998899999999986
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=87.16 Aligned_cols=56 Identities=34% Similarity=0.757 Sum_probs=48.3
Q ss_pred ccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHh---CCCCCCCCCCCCCCCc
Q psy8828 12 KETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLCRATLVDDP 67 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~---~~~~CP~C~~~~~~~~ 67 (81)
....+.+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||+||+.+....
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3455677899999999999999999999999999999997 4568999999986543
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=86.39 Aligned_cols=56 Identities=29% Similarity=0.622 Sum_probs=48.5
Q ss_pred ccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHh-CCCCCCCCCCCCCCCc
Q psy8828 12 KETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDDP 67 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~-~~~~CP~C~~~~~~~~ 67 (81)
......+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||.|++.+....
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3445567899999999999999999999999999999995 5679999999987654
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.77 E-value=8.2e-19 Score=88.55 Aligned_cols=56 Identities=23% Similarity=0.628 Sum_probs=48.1
Q ss_pred CCccccCCCCccccccccCCCCCeecC-CCCcccHHHHHHHHhCC--CCCCCCCCCCCC
Q psy8828 10 PTKETLLGVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDRE--QTCPLCRATLVD 65 (81)
Q Consensus 10 ~~~~~~~~~~~~C~iC~~~~~~p~~l~-C~h~fc~~Cl~~~~~~~--~~CP~C~~~~~~ 65 (81)
....+.+.+.+.|+||++.+.+|+.++ |||+||..||.+|+..+ ..||+||+.+..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 334456677899999999999999999 99999999999999854 689999998654
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.75 E-value=4.1e-20 Score=98.16 Aligned_cols=65 Identities=22% Similarity=0.498 Sum_probs=54.8
Q ss_pred ccCCCCccccccccCCCCCee-cCCCCcccHHHHHHHHhCC-CCCCCCCCCCCCCccccCcccchhh
Q psy8828 14 TLLGVGCICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~-l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
..+.+.+.|+||++.+.+|+. ++|||+||..||.+|+... ..||.||.++....+..+..+..+.
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~ 83 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVT 83 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHH
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHH
Confidence 445667899999999999999 8999999999999999977 7999999999776666666555544
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=87.12 Aligned_cols=53 Identities=32% Similarity=0.589 Sum_probs=47.3
Q ss_pred ccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
....+.+.|+||++.+.+++.++|||.||..|+.+|+.....||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 34456789999999999999999999999999999999889999999988643
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.75 E-value=5.5e-19 Score=96.84 Aligned_cols=64 Identities=20% Similarity=0.481 Sum_probs=53.3
Q ss_pred CCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCCC-CccccCcccchhhh
Q psy8828 16 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVD-DPAWRDGATSYFVQ 79 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~-~~~~~~~~~~~~~~ 79 (81)
+.+.+.|+||++.+.+|+.++|||+||..||.+|+... ..||.||..+.. .....|..+.++++
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 34568999999999999999999999999999999854 599999999976 45566666666554
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=88.15 Aligned_cols=57 Identities=28% Similarity=0.637 Sum_probs=48.8
Q ss_pred CCccccCCCCccccccccCCCC----CeecCCCCcccHHHHHHHHhCC---CCCCCCCCCCCCC
Q psy8828 10 PTKETLLGVGCICPICHDEFKT----PVQLTCCHIFCESCVTKWFDRE---QTCPLCRATLVDD 66 (81)
Q Consensus 10 ~~~~~~~~~~~~C~iC~~~~~~----p~~l~C~h~fc~~Cl~~~~~~~---~~CP~C~~~~~~~ 66 (81)
....+...+.+.|+||++.+.+ |+.++|||+||..|+.+|+..+ ..||.||..+...
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3344566778899999999998 8999999999999999999865 7999999987654
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=82.52 Aligned_cols=49 Identities=39% Similarity=0.813 Sum_probs=42.9
Q ss_pred CccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHh---CCCCCCCC
Q psy8828 11 TKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLC 59 (81)
Q Consensus 11 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~---~~~~CP~C 59 (81)
...+.+++.+.|+||++.+.+|+.++|||+||..||.+|+. ....||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34456678899999999999999999999999999999998 45689987
No 20
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=4.5e-18 Score=86.43 Aligned_cols=61 Identities=31% Similarity=0.897 Sum_probs=50.1
Q ss_pred CccccCCCCccccccccCCCCC---eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccC
Q psy8828 11 TKETLLGVGCICPICHDEFKTP---VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRD 71 (81)
Q Consensus 11 ~~~~~~~~~~~C~iC~~~~~~p---~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~ 71 (81)
...+...+...|+||++.+.++ +.++|+|.||..||.+|+..+..||+||+.+.......+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3444556778999999999866 446999999999999999988999999999877655443
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=85.83 Aligned_cols=54 Identities=30% Similarity=0.729 Sum_probs=46.8
Q ss_pred ccccCCCCccccccccCCCCC-------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 12 KETLLGVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p-------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
......+...|+||++.+.++ +.++|||.||..||.+|+..+..||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 344556788999999999876 778999999999999999988999999998754
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.74 E-value=1.1e-18 Score=94.95 Aligned_cols=68 Identities=25% Similarity=0.550 Sum_probs=56.2
Q ss_pred CccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCC-CCCCCCCCCCCCccccCcccchhh
Q psy8828 11 TKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 11 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~-~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
.....+.+.+.|+||++.+.+|+.++|||+||..||.+|+..+. .||.||..+......++..+.+.+
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred hhccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH
Confidence 34556778899999999999999999999999999999998654 999999998776666665554444
No 23
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.73 E-value=7.6e-19 Score=94.26 Aligned_cols=65 Identities=23% Similarity=0.644 Sum_probs=53.2
Q ss_pred ccCCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCC----ccccCcccchhh
Q psy8828 14 TLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDD----PAWRDGATSYFV 78 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~----~~~~~~~~~~~~ 78 (81)
+.+.+.+.|+||++.+.+|+.+ +|||+||..||..|+..+..||.|+..+... ....+..+.+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i 79 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIV 79 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHH
Confidence 4456788999999999999998 9999999999999999989999999998754 333444444443
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.73 E-value=2.1e-18 Score=86.15 Aligned_cols=54 Identities=30% Similarity=0.734 Sum_probs=47.1
Q ss_pred CCCCccccccccCCCCC-------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccc
Q psy8828 16 LGVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAW 69 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p-------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~ 69 (81)
..+.+.|+||++.+.++ +.++|||+||..|+.+|+..+..||+||+.+......
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 34677999999999887 7889999999999999999889999999998765443
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.71 E-value=4.5e-18 Score=94.76 Aligned_cols=50 Identities=34% Similarity=0.928 Sum_probs=45.7
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
++.+.|+||++.+.+|+.++|||+||..||.+|+..+..||.||+++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34578999999999999999999999999999999999999999998653
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.71 E-value=8.9e-18 Score=90.33 Aligned_cols=63 Identities=32% Similarity=0.704 Sum_probs=52.9
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC---CCCCCCCCCCCCCccccCcccchhhh
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE---QTCPLCRATLVDDPAWRDGATSYFVQ 79 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~---~~CP~C~~~~~~~~~~~~~~~~~~~~ 79 (81)
.+.+.|+||++.+.+|+.++|||+||..|+.+|+... ..||.|+..+.......+..+.++++
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~ 84 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVE 84 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHH
Confidence 4567999999999999999999999999999999865 48999999998776666666555544
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.71 E-value=7e-18 Score=95.23 Aligned_cols=65 Identities=23% Similarity=0.596 Sum_probs=54.0
Q ss_pred CCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCCCC-ccccCcccchhhhc
Q psy8828 16 LGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDD-PAWRDGATSYFVQI 80 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~~-~~~~~~~~~~~~~~ 80 (81)
+.+.+.|+||++.+.+|++++|||+||..||.+|+... ..||+||..+... ....|..+.++++.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~ 141 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 34567999999999999999999999999999999865 4899999999876 55566666666543
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=79.30 Aligned_cols=49 Identities=37% Similarity=1.016 Sum_probs=42.1
Q ss_pred CccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHh---CCCCCCCC
Q psy8828 11 TKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLC 59 (81)
Q Consensus 11 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~---~~~~CP~C 59 (81)
...+...+.+.|+||++.+.+|+.++|||+||..||.+|+. ....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44455667889999999999999999999999999999954 55789987
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=82.47 Aligned_cols=55 Identities=31% Similarity=0.818 Sum_probs=46.4
Q ss_pred ccccCCCCccccccccCCCCCeec---CCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 12 KETLLGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 12 ~~~~~~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
..........|+||++.+.++..+ +|+|.||..||.+|+..+..||+||+.+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344556678999999999876544 9999999999999999888999999998654
No 30
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.70 E-value=7.8e-19 Score=95.10 Aligned_cols=52 Identities=29% Similarity=0.754 Sum_probs=45.7
Q ss_pred ccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC-CCCCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVD 65 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~-~~~CP~C~~~~~~ 65 (81)
....+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||.||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 344567899999999999999999999999999999876 5789999998753
No 31
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=2.1e-19 Score=97.71 Aligned_cols=65 Identities=26% Similarity=0.519 Sum_probs=54.8
Q ss_pred cccCCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhh
Q psy8828 13 ETLLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQ 79 (81)
Q Consensus 13 ~~~~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~ 79 (81)
...+.+.+.|+||++.+.+|+.+ +|||+||..||..|+. ..||.|+..+.......+..+.++++
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHH
Confidence 34456788999999999999999 9999999999999987 78999999987666666766666654
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-18 Score=89.17 Aligned_cols=65 Identities=26% Similarity=0.540 Sum_probs=54.4
Q ss_pred CCCCccccccccCCCCCeecC-CCCcccHHHHHHHHhCC------CCCCC--CCCC-CCCCccccCcccchhhhc
Q psy8828 16 LGVGCICPICHDEFKTPVQLT-CCHIFCESCVTKWFDRE------QTCPL--CRAT-LVDDPAWRDGATSYFVQI 80 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l~-C~h~fc~~Cl~~~~~~~------~~CP~--C~~~-~~~~~~~~~~~~~~~~~~ 80 (81)
..+.+.||||++++.+|++++ |||+||+.||.+|+..+ ..||+ |+.. +....+.+|..+.+.++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN 78 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence 456789999999999999996 99999999999999753 58999 8876 766677778777777654
No 33
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.6e-17 Score=79.74 Aligned_cols=53 Identities=28% Similarity=0.727 Sum_probs=44.6
Q ss_pred ccCCCCccccccccCCCC---CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
........|+||++.+.. ++.++|||.||..||.+|+..+..||+||..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 344566799999998853 46789999999999999999888999999988653
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=81.77 Aligned_cols=51 Identities=31% Similarity=0.801 Sum_probs=45.1
Q ss_pred CCccccccccCCCCC-------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCcc
Q psy8828 18 VGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p-------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~ 68 (81)
+.+.|+||++.+.++ +.++|||.||..|+.+|+..+..||.||+.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 467899999999876 678999999999999999999999999999876543
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=5.6e-17 Score=77.32 Aligned_cols=48 Identities=40% Similarity=0.884 Sum_probs=42.5
Q ss_pred CCCccccccccCCCC---CeecC-CCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKT---PVQLT-CCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~---p~~l~-C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
++...|+||++.+.+ ++.++ |||.||..|+.+|++.+..||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999987 66776 9999999999999999999999998764
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=2.5e-17 Score=99.81 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=57.4
Q ss_pred cCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
...+.+.|+||++.+.+|++++|||+||+.||.+|+..+ ..||+|+.++....+.+|..+.+.++.|
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 345678999999999999999999999999999999854 4599999999877788888877776643
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-17 Score=82.08 Aligned_cols=53 Identities=36% Similarity=0.842 Sum_probs=46.8
Q ss_pred cccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 13 ETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 13 ~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
.....+...|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3445667899999999999 8899999999999999999899999999988754
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.66 E-value=1.4e-17 Score=95.00 Aligned_cols=62 Identities=29% Similarity=0.693 Sum_probs=49.8
Q ss_pred CCCccccccccCCCCCeec-CCCCcccHHHHHHHHhC-CCCCCCCCCCCCCC-ccccCcccchhh
Q psy8828 17 GVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDR-EQTCPLCRATLVDD-PAWRDGATSYFV 78 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~-~~~CP~C~~~~~~~-~~~~~~~~~~~~ 78 (81)
.+.+.|+||++.+.+|+.+ +|||+||..||.+|+.. ...||.|+..+... ....+..+.+++
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i 116 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALI 116 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHH
Confidence 4557999999999999988 99999999999999996 68899999998543 334444444444
No 39
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.66 E-value=3.6e-17 Score=93.68 Aligned_cols=68 Identities=25% Similarity=0.537 Sum_probs=55.3
Q ss_pred CCccccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCCCCccccCcccchh
Q psy8828 10 PTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYF 77 (81)
Q Consensus 10 ~~~~~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~ 77 (81)
......+.+.+.|+||++.+.+|++++|||+||..|+.+|+..+ ..||.||..+......++..+.+.
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 77 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hhhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHH
Confidence 33455677889999999999999999999999999999999854 499999999877655555444433
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-17 Score=81.67 Aligned_cols=51 Identities=33% Similarity=0.803 Sum_probs=44.7
Q ss_pred CCCCccccccccCCCCC---eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 16 LGVGCICPICHDEFKTP---VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p---~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
..+...|+||++.+.++ +.++|+|.||..||.+|+..+..||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567999999999887 6679999999999999999889999999988653
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=83.27 Aligned_cols=49 Identities=37% Similarity=0.981 Sum_probs=43.5
Q ss_pred CCCccccccccCCCC---CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.+...|+||++.+.+ ++.++|||.||..||.+|+..+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999999887 6678999999999999999999999999998764
No 42
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.65 E-value=1.2e-16 Score=76.12 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=41.6
Q ss_pred CCccccccccCCCC----CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~----p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
+...|+||++.+.+ ++.++|||.||..|+.+|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999866 667799999999999999998899999998764
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.64 E-value=1.9e-16 Score=77.87 Aligned_cols=51 Identities=33% Similarity=0.753 Sum_probs=42.6
Q ss_pred CCcccccccc-CCCCC----eecCCCCcccHHHHHHHHhC-CCCCCCCCCCCCCCcc
Q psy8828 18 VGCICPICHD-EFKTP----VQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPA 68 (81)
Q Consensus 18 ~~~~C~iC~~-~~~~p----~~l~C~h~fc~~Cl~~~~~~-~~~CP~C~~~~~~~~~ 68 (81)
+++.|+||++ .+.+| +.++|||+||..|+.+|+.+ ...||.|++.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 88888 45799999999999999664 4689999999876544
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.64 E-value=1.4e-16 Score=78.86 Aligned_cols=48 Identities=38% Similarity=0.993 Sum_probs=43.4
Q ss_pred CCccccccccCCCCC-eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p-~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
....|+||++.+.++ +.++|||.||..|+.+|+..+..||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999999997 677999999999999999988999999998864
No 45
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.64 E-value=9.2e-17 Score=92.75 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=58.4
Q ss_pred ccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
....+.+.||||++++.+|++++|||+||+.||.+|+..+ .+||+|+.++....+.+|..+.+.++.|
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 3456789999999999999999999999999999999853 4699999999877788888887777643
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.63 E-value=6.6e-17 Score=87.57 Aligned_cols=54 Identities=26% Similarity=0.659 Sum_probs=47.2
Q ss_pred cCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhC-CCCCCCCCCCCCCCcc
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDDPA 68 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~-~~~CP~C~~~~~~~~~ 68 (81)
.+.+.+.|+||++.+.+|+.++|||+||..||.+|+.. ...||.|+..+.....
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 34557899999999999999999999999999999986 6799999999876543
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.63 E-value=1.4e-16 Score=87.51 Aligned_cols=52 Identities=31% Similarity=0.782 Sum_probs=46.6
Q ss_pred CCCccccccccCCCCC-------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCcc
Q psy8828 17 GVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p-------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~ 68 (81)
.+.+.|+||++.+.+| +.++|||+||..||.+|+..+..||+|++.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4578999999999988 888999999999999999999999999999876543
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.62 E-value=4e-17 Score=91.32 Aligned_cols=51 Identities=25% Similarity=0.680 Sum_probs=45.2
Q ss_pred ccCCCCccccccccCCCCCeecCCCCcccHHHHHHHHhCC-CCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLV 64 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~-~~CP~C~~~~~ 64 (81)
..+++.+.|+||++.+.+|++++|||+||..||.+|+... ..||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456789999999999999999999999999999999865 48999998753
No 49
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.3e-16 Score=78.72 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=41.5
Q ss_pred CCccccccccCCCC--------------Ceec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT--------------PVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 18 ~~~~C~iC~~~~~~--------------p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
++..|+||++.+.+ ++.+ +|+|.||..||.+|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46689999999976 3444 5999999999999999999999999987643
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.60 E-value=3.5e-16 Score=75.03 Aligned_cols=47 Identities=30% Similarity=0.636 Sum_probs=41.3
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 45789999999999999999999999999976 457899999988654
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.60 E-value=1.6e-15 Score=81.76 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=41.2
Q ss_pred CCccccccccCCCCCe------------------ecCCCCcccHHHHHHHH-----hCCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPV------------------QLTCCHIFCESCVTKWF-----DREQTCPLCRATLVDD 66 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~------------------~l~C~h~fc~~Cl~~~~-----~~~~~CP~C~~~~~~~ 66 (81)
.+..|+||++.|.++. .++|+|.||..||.+|+ ..+..||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4468999999997654 57999999999999999 4567999999988654
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.59 E-value=3.9e-15 Score=75.76 Aligned_cols=53 Identities=23% Similarity=0.558 Sum_probs=42.3
Q ss_pred cCCCCccccccccCCC--CCeecC--CCCcccHHHHHHHHh-CCCCCCCCCCCCCCCc
Q psy8828 15 LLGVGCICPICHDEFK--TPVQLT--CCHIFCESCVTKWFD-REQTCPLCRATLVDDP 67 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~--~p~~l~--C~h~fc~~Cl~~~~~-~~~~CP~C~~~~~~~~ 67 (81)
.+++.+.|+||++.+. ++..++ |||+||..|+.+++. ....||.||+++....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3567789999999884 344555 999999999999875 4578999999987653
No 53
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.51 E-value=1.6e-14 Score=77.28 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=41.0
Q ss_pred CCccccccccCCCCC------------------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTP------------------VQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p------------------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
+...|+||++.+.++ +.++|+|.||..||.+|+..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999998865 33699999999999999999999999999864
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.4e-15 Score=89.77 Aligned_cols=65 Identities=20% Similarity=0.452 Sum_probs=55.1
Q ss_pred CCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCC--CCCCC--CCCCCCCCccccCcccchhhhc
Q psy8828 16 LGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPL--CRATLVDDPAWRDGATSYFVQI 80 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~--~~CP~--C~~~~~~~~~~~~~~~~~~~~~ 80 (81)
....+.||||++.+.+|++. .|||+||+.||..|+..+ ..||+ |++.+....+.+|..+.++++.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 35678999999999999985 999999999999998854 57999 9999887777778777766653
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.49 E-value=4.7e-15 Score=81.37 Aligned_cols=53 Identities=30% Similarity=0.740 Sum_probs=46.2
Q ss_pred CCCCccccccccCCCCC-------eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCCcc
Q psy8828 16 LGVGCICPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p-------~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~ 68 (81)
..+...|+||++.+.++ +.++|||.||..|+.+|+..+..||+||..+....+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 35678999999998876 778999999999999999999999999999876543
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.48 E-value=1.1e-15 Score=77.03 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=41.0
Q ss_pred CCCCccccccccCCCCCeecCCCCc-ccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 16 LGVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+++.+.|+||++.+.+++.++|||. ||..|+.+| ..||+||+.+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3456799999999999999999999 999999887 789999998754
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.46 E-value=4.1e-14 Score=69.47 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=42.6
Q ss_pred CCccccccccCCCCCeec--CCCCc-ccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHI-FCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
++..|+||++...+++.+ ||||. ||..|+.+|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999999877 99999 899999999998899999999875
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.44 E-value=5.4e-14 Score=68.82 Aligned_cols=47 Identities=17% Similarity=0.527 Sum_probs=42.3
Q ss_pred CCccccccccCCCCCeec--CCCCc-ccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHI-FCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
....|+||++...+++.+ ||||. ||..|+.+|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 355899999999998877 99998 999999999988889999999875
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.44 E-value=9.9e-14 Score=87.90 Aligned_cols=49 Identities=33% Similarity=0.808 Sum_probs=44.4
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHHHHHh-CCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDD 66 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~-~~~~CP~C~~~~~~~ 66 (81)
....|+||++.+.+|+.++|||.||..|+..|+. ....||.||..+...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3479999999999999999999999999999998 778999999988653
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-14 Score=72.52 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=39.5
Q ss_pred CCCccccccccCCCCCeecCCCCc-ccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
++...|+||++.+.+++.++|||. ||..|+.+ ...||+||.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 445789999999999999999999 99999964 3789999998865
No 61
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.38 E-value=1.8e-13 Score=66.62 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=47.4
Q ss_pred CccccccccCCCCCeec-CCCCcccHHHHHHHHhCCCCCCCCCCCCCCCccccCc
Q psy8828 19 GCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDG 72 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~ 72 (81)
.+.|+|+++.+.+|+.+ ++||+|++.+|.+|+..+..||+.++++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 47899999999999999 9999999999999999878899999998776665544
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.9e-13 Score=65.37 Aligned_cols=48 Identities=29% Similarity=0.640 Sum_probs=41.3
Q ss_pred ccCCCCccccccccCCCCCeecCCCCc-ccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
....+...|.||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344457899999999999999999999 99999984 3789999998865
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=66.96 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=41.2
Q ss_pred CCCccccccccCCC--CCeecCCC-----CcccHHHHHHHHhCC--CCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFK--TPVQLTCC-----HIFCESCVTKWFDRE--QTCPLCRATLVDD 66 (81)
Q Consensus 17 ~~~~~C~iC~~~~~--~p~~l~C~-----h~fc~~Cl~~~~~~~--~~CP~C~~~~~~~ 66 (81)
.+...|.||++.+. +++++||. |.||..||.+|+..+ ..||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34568999998874 46777996 999999999999854 5999999998654
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.4e-13 Score=74.78 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=0.8
Q ss_pred CCccccccccCCCCCe------------------ecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPV------------------QLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~------------------~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+...|+||++.+.++. .++|+|.||..||.+|+..+..||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3468999999987631 24899999999999999999999999998643
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=61.41 Aligned_cols=51 Identities=27% Similarity=0.537 Sum_probs=42.3
Q ss_pred cCCCCccccccccCCCCCeec-CCCCcccHHHHHHHHhCC--CCCCCCCCCCCC
Q psy8828 15 LLGVGCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPLCRATLVD 65 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~--~~CP~C~~~~~~ 65 (81)
..+....|+||.+.+...... .|+|.|+..||.+|++.+ .+||.|+.....
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 334556899999999876544 899999999999999976 899999988653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.25 E-value=1e-12 Score=66.84 Aligned_cols=47 Identities=32% Similarity=0.764 Sum_probs=40.6
Q ss_pred cCCCCccccccccCCCCCeecCCCCc-ccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.+++...|+||++.+.+++.+||||. ||..|+..| ..||+||..+..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 33456789999999999999999999 999999866 489999998764
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.7e-11 Score=64.03 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=38.9
Q ss_pred CCccccccccCCCCCeec---CCCCcccHHHHHHHHhC--------CCCCCC--CCCC--CCC
Q psy8828 18 VGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFDR--------EQTCPL--CRAT--LVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~~--------~~~CP~--C~~~--~~~ 65 (81)
+.+.|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 467899999999887554 79999999999998762 247999 9888 543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.15 E-value=5.4e-12 Score=79.14 Aligned_cols=45 Identities=27% Similarity=0.778 Sum_probs=40.5
Q ss_pred CCCccccccccCCCCCeecCCCCc-ccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHI-FCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~-fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
++...|+||++.+.+|+.+||||. ||..|+..| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 456899999999999999999999 999999877 789999998754
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.90 E-value=2.9e-09 Score=51.39 Aligned_cols=47 Identities=23% Similarity=0.600 Sum_probs=38.4
Q ss_pred CCccccccccCCCCCeecCCC--C---cccHHHHHHHHh--CCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCC--H---IFCESCVTKWFD--REQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~--h---~fc~~Cl~~~~~--~~~~CP~C~~~~~ 64 (81)
+...|.||++...++..+||. + .||..||.+|+. .+..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999887777767865 4 799999999987 3678999998875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.72 E-value=2.5e-09 Score=67.03 Aligned_cols=49 Identities=27% Similarity=0.651 Sum_probs=38.6
Q ss_pred CCCccccccccCCCC----Cee----cCCCCcccHHHHHHHHhCC-----------CCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKT----PVQ----LTCCHIFCESCVTKWFDRE-----------QTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~----p~~----l~C~h~fc~~Cl~~~~~~~-----------~~CP~C~~~~~~ 65 (81)
+....|+||++.+.+ |.. ..|+|.||..||.+|++.. ..||.|++++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456799999999876 211 3699999999999999731 479999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.70 E-value=1.7e-08 Score=52.93 Aligned_cols=45 Identities=24% Similarity=0.630 Sum_probs=36.7
Q ss_pred cccccccCCCC-CeecCCCCcccHHHHHHHHh-CCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKT-PVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~-p~~l~C~h~fc~~Cl~~~~~-~~~~CP~C~~~~~~ 65 (81)
.|++|.-.+.. ...+||+|.||.+|+..|.+ +.+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 57888777665 34669999999999999986 56899999998764
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.23 E-value=7.3e-07 Score=61.96 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred cCCCCccccccccCCCCCeecCCC-CcccHHHHHHHHhCCCCCCCCCCCCCCCccccCcccchhhhcC
Q psy8828 15 LLGVGCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQIF 81 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l~C~-h~fc~~Cl~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~y 81 (81)
...+.+.|||-.+.+.+|++++-| ++|=+..|.+|+..+.+||.-+.++......+|..+...++.|
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 446789999999999999999998 6999999999999889999999999887888888888777654
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.08 E-value=6e-06 Score=49.52 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=39.3
Q ss_pred CccccccccCCCCCeec-CCCCcccHHHHHHHHhCC--CCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQL-TCCHIFCESCVTKWFDRE--QTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l-~C~h~fc~~Cl~~~~~~~--~~CP~C~~~~~~ 65 (81)
...|.+|.+.....+.- .|++.||..|+..|++.. ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56899999998877666 499999999999998754 599999887543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=41.16 Aligned_cols=32 Identities=22% Similarity=0.729 Sum_probs=26.9
Q ss_pred CCccccccccC-CCCCee--cCCCCcccHHHHHHH
Q psy8828 18 VGCICPICHDE-FKTPVQ--LTCCHIFCESCVTKW 49 (81)
Q Consensus 18 ~~~~C~iC~~~-~~~p~~--l~C~h~fc~~Cl~~~ 49 (81)
+++.|+||.+. +.+++. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45789999975 567777 799999999999983
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.45 E-value=0.00015 Score=37.49 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=37.6
Q ss_pred CccccccccCCCCCeecCCC-CcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C~-h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
.+.|..|+...+ -.+.|. |..|..|+...+..+..||+|+++++..
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 467888887655 345675 8899999999999999999999998764
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.85 E-value=0.0052 Score=30.94 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=28.9
Q ss_pred CCCccccccccCCCCCeecCC----CCcccHHHHHHHHh
Q psy8828 17 GVGCICPICHDEFKTPVQLTC----CHIFCESCVTKWFD 51 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C----~h~fc~~Cl~~~~~ 51 (81)
...+.|.+|.+.+++...+.| .|.||..|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456799999999998765544 69999999988877
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.94 E-value=0.019 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=31.6
Q ss_pred CCCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRATL 63 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~~ 63 (81)
.....|.||.+. ..+++ .|...||..|+..-+. ....|+.|....
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345579999864 22333 7889999999976655 346899997643
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.008 Score=38.21 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=42.7
Q ss_pred CCccccccccCCCCCeec-CCCCcccHH--HHHHHHh--CCCCCCCCCCCCCCCccccCcccchhh
Q psy8828 18 VGCICPICHDEFKTPVQL-TCCHIFCES--CVTKWFD--REQTCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l-~C~h~fc~~--Cl~~~~~--~~~~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
-.+.||+-...+..|+.- .|.|.-|.+ -+..... ....||+|.+.+....+..+..+..++
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 347999999999999865 899985533 3333332 457999999988766666665554444
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.73 E-value=0.01 Score=37.57 Aligned_cols=61 Identities=21% Similarity=0.486 Sum_probs=42.5
Q ss_pred CCccccccccCCCCCeec-CCCCccc--HHHHHHHHh--CCCCCCCCCCCCCCCccccCcccchhh
Q psy8828 18 VGCICPICHDEFKTPVQL-TCCHIFC--ESCVTKWFD--REQTCPLCRATLVDDPAWRDGATSYFV 78 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l-~C~h~fc--~~Cl~~~~~--~~~~CP~C~~~~~~~~~~~~~~~~~~~ 78 (81)
-.+.||+-...+..|+.- .|.|.-| ..-+..... ....||+|.+.+....+..+..+..++
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 357899999999999865 8999844 433333333 457999999988766666655544443
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.45 E-value=0.22 Score=25.45 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=33.8
Q ss_pred CCccccccccCCCC----Ceec---CCCCcccHHHHHHH-HhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT----PVQL---TCCHIFCESCVTKW-FDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~----p~~l---~C~h~fc~~Cl~~~-~~~~~~CP~C~~~~~ 64 (81)
..-.|.||-+.+-. ...+ .|+-..|+.|++-- ...+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34589999997532 1223 57778899999743 346789999988875
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.72 E-value=0.31 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.450 Sum_probs=24.7
Q ss_pred ccCCCCccccccccCCCCCeec---CCCCcccHHHHHHH
Q psy8828 14 TLLGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKW 49 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~ 49 (81)
+....+..|.||...-.+ ..+ -|+..||..|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 344467789999854322 333 47899999999986
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.39 E-value=0.15 Score=23.97 Aligned_cols=43 Identities=21% Similarity=0.580 Sum_probs=29.8
Q ss_pred CCCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRA 61 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~ 61 (81)
.....|.+|.+. ..+++ .|...||..|+..-+. ....||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345689999874 23333 7888999999986433 3468998854
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.13 E-value=0.12 Score=23.30 Aligned_cols=41 Identities=22% Similarity=0.561 Sum_probs=26.6
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----CCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRA 61 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~~~~CP~C~~ 61 (81)
.|.||...-.....+ .|...||..|+..-+. ....||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887654332233 6888999999964333 2357888854
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.64 E-value=0.067 Score=26.15 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCccccccccCCCCCeec---CCCCcccHHHHHHHHh----CCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRATLV 64 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~~~~CP~C~~~~~ 64 (81)
.+...|++|.........+ .|...||..|+..-.. ....||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3446799998876543233 6888999999964332 2467999966543
No 85
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.11 E-value=0.17 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=21.6
Q ss_pred CccccccccCCCCCe----ecCCCCcccHHHHHH
Q psy8828 19 GCICPICHDEFKTPV----QLTCCHIFCESCVTK 48 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~~ 48 (81)
...|.+|...|.--. -..||..||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 457999998775321 127999999999753
No 86
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=90.92 E-value=0.016 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=11.1
Q ss_pred CCccccccccCCCCCe
Q psy8828 18 VGCICPICHDEFKTPV 33 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~ 33 (81)
+.+.||+|+..+..+.
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3578888887776653
No 87
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=90.62 E-value=0.34 Score=25.69 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=35.5
Q ss_pred ccccccccCCCC---CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 20 ~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
+.|..|...+.+ .....=|..||..|..+.+.....|..|..++...
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 688999888863 23345677899999988776555899998888653
No 88
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=89.69 E-value=0.9 Score=22.01 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=28.4
Q ss_pred CCCccccccccCCCCCeec--C--CC-CcccHHHHHHHHh----CCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL--T--CC-HIFCESCVTKWFD----REQTCPLCRATL 63 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l--~--C~-h~fc~~Cl~~~~~----~~~~CP~C~~~~ 63 (81)
.+...| +|.......++. . |. ..||..|+. +. ....||.|....
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345677 898865443332 3 55 589999996 22 346899996543
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=89.60 E-value=0.25 Score=24.03 Aligned_cols=29 Identities=24% Similarity=0.637 Sum_probs=21.2
Q ss_pred CccccccccCCCCCee----cCCCCcccHHHHH
Q psy8828 19 GCICPICHDEFKTPVQ----LTCCHIFCESCVT 47 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~----l~C~h~fc~~Cl~ 47 (81)
...|.+|...|.--.. -.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999988763221 2799999999864
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=89.09 E-value=0.14 Score=27.57 Aligned_cols=43 Identities=26% Similarity=0.633 Sum_probs=25.8
Q ss_pred CCccccccccCCCCCe----ecCCCCcccHHHHHHHHhCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPV----QLTCCHIFCESCVTKWFDREQTCPLCR 60 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~~~~~~~~~CP~C~ 60 (81)
+...|..|...|.--. -..||..||..|..........|-.|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 3458999998876421 127999999999754433344565553
No 91
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.00 E-value=0.69 Score=22.40 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
....|+.|.+.+...++..-+..||..|+ .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45589999998877655566777777764 5888887764
No 92
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=88.62 E-value=0.2 Score=26.10 Aligned_cols=12 Identities=33% Similarity=1.384 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q psy8828 40 IFCESCVTKWFD 51 (81)
Q Consensus 40 ~fc~~Cl~~~~~ 51 (81)
.||+.||.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 93
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=88.56 E-value=0.21 Score=26.03 Aligned_cols=12 Identities=42% Similarity=1.284 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q psy8828 40 IFCESCVTKWFD 51 (81)
Q Consensus 40 ~fc~~Cl~~~~~ 51 (81)
.||+.||.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 94
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.13 E-value=0.17 Score=23.81 Aligned_cols=44 Identities=23% Similarity=0.490 Sum_probs=29.0
Q ss_pred CCCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 62 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~ 62 (81)
.....|.+|.+. ..+++ .|...||..|+..-+. ....||.|...
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999863 22222 6888899999875333 34579999654
No 95
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.03 E-value=0.23 Score=23.94 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCccccCCCCccccccccCCCCCeec---CCCCcccHHHHHHHHh---CCCCCCCCC
Q psy8828 1 MLGGQLGVSPTKETLLGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD---REQTCPLCR 60 (81)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~---~~~~CP~C~ 60 (81)
|+.+...++........+...| ||.........+ .|..-|+..|+.--.. ....||.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~ 65 (68)
T 3o70_A 1 MHHHHHHSSGRENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 65 (68)
T ss_dssp -------------CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHH
T ss_pred CcccccCCcccccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCC
Confidence 4445545555555555667788 998876654344 5777788888742111 234566663
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.00 E-value=1.4 Score=21.40 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=30.3
Q ss_pred CCCccccccccCCCCCeec---CCCCcccHHHHHH----H-----HhCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL---TCCHIFCESCVTK----W-----FDREQTCPLCRATL 63 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~----~-----~~~~~~CP~C~~~~ 63 (81)
.....| +|.........+ .|..-||..|+.- . ......||.|+...
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345677 899877643333 6888899999841 1 12467899986543
No 97
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.95 E-value=0.14 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.453 Sum_probs=32.2
Q ss_pred CCCccccccccCCC---CCeec--CCCCcccHHHHHHHHh--------CCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFK---TPVQL--TCCHIFCESCVTKWFD--------REQTCPLCRATL 63 (81)
Q Consensus 17 ~~~~~C~iC~~~~~---~p~~l--~C~h~fc~~Cl~~~~~--------~~~~CP~C~~~~ 63 (81)
+....|.+|...-. +.+++ .|...||..|+..-+. ....|+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 45678999998643 34444 7888999999875332 346888886544
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.15 E-value=0.044 Score=28.11 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=28.1
Q ss_pred CCCCccccccccCCCCCeec---CCCCcccHHHHHHHHh----CCCCCCCCCC
Q psy8828 16 LGVGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCRA 61 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~~~~CP~C~~ 61 (81)
..+...|.||...-....++ .|...||..|+.+-+. ....||.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34556799998764322222 6777788888763332 2356888754
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.98 E-value=0.19 Score=25.93 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCccccccccCCCCCeec---CCCCcccHHHHHHHHh---CCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL---TCCHIFCESCVTKWFD---REQTCPLCRAT 62 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~---~~~~CP~C~~~ 62 (81)
+...| ||.........+ .|...|+..|+..-.. ....||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 44577 888776555444 6788899999854222 23689999643
No 100
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=86.63 E-value=1.9 Score=21.31 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
....|..|.+.+...++..-+..||.+| +.|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4458999999888755556677777766 4588898887653
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=86.34 E-value=0.43 Score=23.82 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=22.4
Q ss_pred CCccccccccCCCCCee----cCCCCcccHHHHHH
Q psy8828 18 VGCICPICHDEFKTPVQ----LTCCHIFCESCVTK 48 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~----l~C~h~fc~~Cl~~ 48 (81)
+...|.+|...|.--.. -.||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34589999998764221 27999999999753
No 102
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=86.23 E-value=0.44 Score=23.67 Aligned_cols=30 Identities=33% Similarity=0.893 Sum_probs=21.9
Q ss_pred CccccccccCCCCCee----cCCCCcccHHHHHH
Q psy8828 19 GCICPICHDEFKTPVQ----LTCCHIFCESCVTK 48 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~----l~C~h~fc~~Cl~~ 48 (81)
...|.+|...|.--.. -.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3479999998763221 27999999999753
No 103
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=85.58 E-value=0.81 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCccccccccCCCC---CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+-+.|..|...+.. +....=|..||..|..+.......|..|.+++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 44788899888853 3344567789999988766544478888887754
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=85.41 E-value=0.35 Score=26.08 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=20.8
Q ss_pred ccccccccCCCCCe----ecCCCCcccHHHHH
Q psy8828 20 CICPICHDEFKTPV----QLTCCHIFCESCVT 47 (81)
Q Consensus 20 ~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~ 47 (81)
..|.+|...|.--. --.||+.||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 47999999876321 12799999999964
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.08 E-value=2.8 Score=21.91 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=25.7
Q ss_pred CCccccccccCCC-------CCeec--CCCCcccHHHHHH-------HHhCCCCCCCCC
Q psy8828 18 VGCICPICHDEFK-------TPVQL--TCCHIFCESCVTK-------WFDREQTCPLCR 60 (81)
Q Consensus 18 ~~~~C~iC~~~~~-------~p~~l--~C~h~fc~~Cl~~-------~~~~~~~CP~C~ 60 (81)
....|.+|...-. +..+. .|+..||..|+.. .......||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4557888876521 12222 7999999999941 122445666663
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.05 E-value=0.47 Score=23.67 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=21.0
Q ss_pred CccccccccCCCCCee----cCCCCcccHHHHH
Q psy8828 19 GCICPICHDEFKTPVQ----LTCCHIFCESCVT 47 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~----l~C~h~fc~~Cl~ 47 (81)
...|.+|...|.--.. ..||..||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3579999998753211 2799999999854
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.29 E-value=0.66 Score=27.39 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=22.3
Q ss_pred CCCccccccccCCCCCe----ecCCCCcccHHHHH
Q psy8828 17 GVGCICPICHDEFKTPV----QLTCCHIFCESCVT 47 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~ 47 (81)
.+...|.+|...|.--. -..||..||..|-.
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 34568999998776322 12799999999864
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=84.18 E-value=0.59 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=20.0
Q ss_pred CccccccccCCCCCee----cCCCCcccHHHHH
Q psy8828 19 GCICPICHDEFKTPVQ----LTCCHIFCESCVT 47 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~----l~C~h~fc~~Cl~ 47 (81)
...|.+|...|.--.. ..||..||..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3478899887653211 2689999888864
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.95 E-value=2.6 Score=20.60 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCccccccccCCC-CCeec---CCCCcccHHHHHHH---H--hCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFK-TPVQL---TCCHIFCESCVTKW---F--DREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~-~p~~l---~C~h~fc~~Cl~~~---~--~~~~~CP~C~~~~~~ 65 (81)
+...| +|..... ....+ .|..-||..|+.-- . .....||.|+.....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34466 8988764 22223 68888999999411 1 145789999776533
No 110
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.81 E-value=0.55 Score=27.49 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=22.0
Q ss_pred CCCccccccccCCCCCe----ecCCCCcccHHHHH
Q psy8828 17 GVGCICPICHDEFKTPV----QLTCCHIFCESCVT 47 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~ 47 (81)
.+...|.+|...|.--. --.||+.||..|..
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 34578999998875321 12799999998864
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.69 E-value=2.6 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.603 Sum_probs=28.8
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh-----------CCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD-----------REQTCPLCRA 61 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~-----------~~~~CP~C~~ 61 (81)
.+..|.+|.+-=. ... .|-..||..||.+-+. ....||.|..
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3457888877422 222 7889999999986542 3468999964
No 112
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.30 E-value=2 Score=20.79 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=27.4
Q ss_pred CccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
...|+.|...+....+..-+..||..| +.|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 457888988877655445566666655 4588888877644
No 113
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.12 E-value=1.4 Score=22.41 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=32.1
Q ss_pred ccCCCCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 62 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~ 62 (81)
........|.+|.+.- ...+ .|...|+..|+.+-+. ....||.|...
T Consensus 20 ~~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3344567899999752 2222 6888999999976544 34689999654
No 114
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.87 E-value=1.2 Score=20.95 Aligned_cols=40 Identities=30% Similarity=0.702 Sum_probs=26.9
Q ss_pred ccccccccCCCCCeec---CCCCcccHHHHHHHHhCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQL---TCCHIFCESCVTKWFDREQTCPLC 59 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~~~~~CP~C 59 (81)
..|-.|...+.+.... .|++.||.+|=.=.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588888888654422 689999999953222233578877
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.62 E-value=2.5 Score=22.97 Aligned_cols=44 Identities=18% Similarity=0.526 Sum_probs=27.8
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHHHHH-----------hCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWF-----------DREQTCPLCRA 61 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~-----------~~~~~CP~C~~ 61 (81)
.+..|.+|.+-=.-..--.|-..||.+||.+-+ .....|+.|..
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345688887642210011688999999998642 13468999944
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.17 E-value=2.5 Score=20.40 Aligned_cols=47 Identities=19% Similarity=0.457 Sum_probs=29.7
Q ss_pred ccCCCCccccccccCC---CCCeec--CCCCcccHHHHHHHHh--CCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEF---KTPVQL--TCCHIFCESCVTKWFD--REQTCPLCR 60 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~---~~p~~l--~C~h~fc~~Cl~~~~~--~~~~CP~C~ 60 (81)
....+...|.||.+.- .+.+++ .|...|+..|+..-.. ....||.|.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 3445567899998763 223333 7888999999863222 235677664
No 117
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=81.60 E-value=0.52 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.503 Sum_probs=19.5
Q ss_pred CCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 31 TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 31 ~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
.+.-..||+.|. .-+.....||.|+..-...
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 344457999981 1123447899998875543
No 118
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.14 E-value=0.39 Score=25.12 Aligned_cols=42 Identities=21% Similarity=0.519 Sum_probs=26.7
Q ss_pred CCccccccccCCCC-Ceec--CCCCcccHHHHHHHHh----CCCCCCCC
Q psy8828 18 VGCICPICHDEFKT-PVQL--TCCHIFCESCVTKWFD----REQTCPLC 59 (81)
Q Consensus 18 ~~~~C~iC~~~~~~-p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C 59 (81)
++..|.+|.+.-.. ..+. .|+..||..|+..... ....||.|
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 45689999876432 2222 7889999999975443 23455554
No 119
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=80.97 E-value=4 Score=22.65 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+-+.|..|...+.......=|..||..|..+... ..|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccCC
Confidence 4478888988877644445677899999876543 567777666543
No 120
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.74 E-value=3.5 Score=19.99 Aligned_cols=43 Identities=30% Similarity=0.612 Sum_probs=28.0
Q ss_pred CCCCccccccccCCCCC-eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 16 LGVGCICPICHDEFKTP-VQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p-~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
......|+.|.+.+... .+..-+..||..| +.|-.|+..+...
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 34456899999987543 3334556677666 4588887777553
No 121
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=80.22 E-value=2.7 Score=27.01 Aligned_cols=42 Identities=24% Similarity=0.657 Sum_probs=28.2
Q ss_pred CccccccccCCCCCeec----CCCCcccHHHHHHHHh----------CCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQL----TCCHIFCESCVTKWFD----------REQTCPLCRAT 62 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l----~C~h~fc~~Cl~~~~~----------~~~~CP~C~~~ 62 (81)
+..|.+|-+--. +.+ .|...||.+||.+.+. ....|-.|...
T Consensus 93 ~~yCr~C~~Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 446777766421 111 6889999999998874 23689888543
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.95 E-value=2.8 Score=21.37 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=27.1
Q ss_pred CCccccccccCCCCCeec---C--CC-CcccHHHHHHHH--hCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL---T--CC-HIFCESCVTKWF--DREQTCPLCRATL 63 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l---~--C~-h~fc~~Cl~~~~--~~~~~CP~C~~~~ 63 (81)
+...| +|....... .+ . |. ..||..|+.--. .....||.|+...
T Consensus 35 e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34567 998865443 33 3 54 579999986111 1346899996643
No 123
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.95 E-value=0.11 Score=23.94 Aligned_cols=40 Identities=20% Similarity=0.634 Sum_probs=24.3
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLC 59 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C 59 (81)
....|.+|.+. ..+++ .|...||..|+.+-+. ....||.|
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C 53 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHH
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhh
Confidence 45579999874 22222 6778888888864322 22356655
No 124
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=78.93 E-value=0.038 Score=27.81 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=6.7
Q ss_pred ccccccccCCC
Q psy8828 20 CICPICHDEFK 30 (81)
Q Consensus 20 ~~C~iC~~~~~ 30 (81)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45777766554
No 125
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=78.58 E-value=0.51 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.420 Sum_probs=32.3
Q ss_pred CccccccccCCCC---CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
-+.|..|...+.. .....=|..||..|..+.......|..|.+.+..
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 4788888887764 3334556789999987765433368888887754
No 126
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=78.52 E-value=1.9 Score=22.60 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=33.4
Q ss_pred CccccccccCCCCCe-ecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPV-QLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~-~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
-+.|..|...+.... ...=|..||..|..+. ....|..|.+++..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 478889988887532 3456778999998664 45789999888874
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.43 E-value=0.4 Score=23.19 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=25.5
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----C-CCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 61 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~-~~~CP~C~~ 61 (81)
.|.+|...-....++ .|...||..|+.+-+. . ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455776543233333 6888999999974333 2 457888854
No 128
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.24 E-value=0.58 Score=26.62 Aligned_cols=44 Identities=23% Similarity=0.486 Sum_probs=29.7
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRATL 63 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~~ 63 (81)
.+..|.+|.+.= ...+ .|...||..|+.+-+. ....||.|+...
T Consensus 3 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG--ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS--SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC--eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 345799998642 1222 6888999999865444 346899997654
No 129
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=77.78 E-value=4.5 Score=20.29 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.0
Q ss_pred cCCCCccccccccCCC--CCeec---CCCCcccHHHHHHHHh--CCCCCCCCCCCC
Q psy8828 15 LLGVGCICPICHDEFK--TPVQL---TCCHIFCESCVTKWFD--REQTCPLCRATL 63 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~--~p~~l---~C~h~fc~~Cl~~~~~--~~~~CP~C~~~~ 63 (81)
...+...|.||.+.-. ...++ .|.-.|+..|+..-.. ....||.|....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3456779999997641 12233 6888999999964322 346788885543
No 130
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.71 E-value=3 Score=19.37 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=18.3
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
.|+.|...+....+..-+..||..| ..|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 4666666555444334445555444 33555655553
No 131
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.69 E-value=4.4 Score=19.32 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=19.6
Q ss_pred CCccccccccCCCC-CeecCCCCcccHH
Q psy8828 18 VGCICPICHDEFKT-PVQLTCCHIFCES 44 (81)
Q Consensus 18 ~~~~C~iC~~~~~~-p~~l~C~h~fc~~ 44 (81)
....|..|...+.- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45689999986443 4555899999963
No 132
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=77.48 E-value=1.6 Score=24.64 Aligned_cols=41 Identities=29% Similarity=0.754 Sum_probs=26.9
Q ss_pred CccccccccCCCCCeec-----CCCCcccHHHHHHHHhC----------CCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQL-----TCCHIFCESCVTKWFDR----------EQTCPLCRAT 62 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l-----~C~h~fc~~Cl~~~~~~----------~~~CP~C~~~ 62 (81)
+.-|.+|-+- ...+ +|...||.+||...+.. ...|-.|.-.
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 3456666653 1222 48889999999887653 3578888543
No 133
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.16 E-value=0.41 Score=23.66 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=25.7
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----C-CCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 61 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~-~~~CP~C~~ 61 (81)
.|.+|...-....++ .|...||..|+.+-+. . ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 667787643332333 7888999999874333 2 457887753
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.88 E-value=3.7 Score=20.22 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=28.3
Q ss_pred CccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
...|+.|...+....+..-+..||..| +.|..|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCC
Confidence 357999999887666556667777666 458888888764
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.85 E-value=2.7 Score=19.62 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=20.6
Q ss_pred cccccccCCCC--CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKT--PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~--p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.|+.|...+.. .++..-+..|+..| ..|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCC
Confidence 56677776662 33334555555555 346666666543
No 136
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.23 E-value=2.7 Score=19.93 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=17.6
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
.|+-|...+....+..-+..||.+| +.|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 4555655555433334444444444 33555555544
No 137
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.26 E-value=0.95 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.462 Sum_probs=31.3
Q ss_pred ccccccccCCCCCe----ec---CCCCcccHHHHHH------HHh-----CCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPV----QL---TCCHIFCESCVTK------WFD-----REQTCPLCRATLV 64 (81)
Q Consensus 20 ~~C~iC~~~~~~p~----~l---~C~h~fc~~Cl~~------~~~-----~~~~CP~C~~~~~ 64 (81)
..|+||...+.+.- .+ .|..-||..|+.- .+. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999999887642 33 6888899999831 111 2579999977644
No 138
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=75.04 E-value=2 Score=19.81 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=22.9
Q ss_pred ccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
..|+.|...+....+..-+..|+..| ..|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCC
Confidence 35777777666544445555666555 347777766653
No 139
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=74.86 E-value=0.35 Score=23.93 Aligned_cols=41 Identities=27% Similarity=0.597 Sum_probs=24.3
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----CC-CCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----RE-QTCPLCRA 61 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~~-~~CP~C~~ 61 (81)
.|.+|...-....++ .|...||..|+.+-+. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455555543333333 6888899999875443 22 57887754
No 140
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=74.82 E-value=1.9 Score=29.52 Aligned_cols=48 Identities=31% Similarity=0.734 Sum_probs=35.1
Q ss_pred CCCCccccccccCCCCCee----------cCCCCcc--------------------cHHHHHHHHhC--------CCCCC
Q psy8828 16 LGVGCICPICHDEFKTPVQ----------LTCCHIF--------------------CESCVTKWFDR--------EQTCP 57 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p~~----------l~C~h~f--------------------c~~Cl~~~~~~--------~~~CP 57 (81)
..+.-.|+-|+..+.+|.- +.||..| |..|..++... ...||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 3456699999998877531 2577666 99999998762 25899
Q ss_pred CCCCCC
Q psy8828 58 LCRATL 63 (81)
Q Consensus 58 ~C~~~~ 63 (81)
.|.-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 997665
No 141
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.70 E-value=0.29 Score=23.03 Aligned_cols=32 Identities=28% Similarity=0.684 Sum_probs=20.2
Q ss_pred ccccccccCCCCC-----eecC---CCCcccHHHHHHHHh
Q psy8828 20 CICPICHDEFKTP-----VQLT---CCHIFCESCVTKWFD 51 (81)
Q Consensus 20 ~~C~iC~~~~~~p-----~~l~---C~h~fc~~Cl~~~~~ 51 (81)
-.||-|...++.. ++.. |++.||-.|..+|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 4788888877642 2222 667777766665543
No 142
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.31 E-value=2 Score=20.70 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred CCCccccccccCCCCC----eecCCCCcccHH
Q psy8828 17 GVGCICPICHDEFKTP----VQLTCCHIFCES 44 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p----~~l~C~h~fc~~ 44 (81)
.....|..|.....-+ ..-.||.+||..
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 3456899999876644 344799999963
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.86 E-value=4.1 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=25.4
Q ss_pred ccccccccCCC--CCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 20 ~~C~iC~~~~~--~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
..|+.|.+.+. +.++..-+..||..| ..|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCC
Confidence 47888888777 334445566666665 4577887777543
No 144
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=73.72 E-value=0.76 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=29.9
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRATL 63 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~~ 63 (81)
....|.+|.+.= .+.+ .|...||..|+.+-+. ....||.|+...
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445799998642 1222 6888999999865443 346899997654
No 145
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=73.66 E-value=0.23 Score=30.91 Aligned_cols=46 Identities=17% Similarity=0.491 Sum_probs=34.1
Q ss_pred CCCccccccccCCCCCeec----CCC--CcccHHHHHHHHhCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQL----TCC--HIFCESCVTKWFDREQTCPLCRAT 62 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l----~C~--h~fc~~Cl~~~~~~~~~CP~C~~~ 62 (81)
+..-.||+|.....-.+.. .=| +.+|.-|-..|.-....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999999976544432 133 457888888998888999999775
No 146
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=73.45 E-value=2.9 Score=29.18 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=35.0
Q ss_pred CCCccccccccCCCCCee----------cCCCCcc--------------------cHHHHHHHHhC--------CCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQ----------LTCCHIF--------------------CESCVTKWFDR--------EQTCPL 58 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~----------l~C~h~f--------------------c~~Cl~~~~~~--------~~~CP~ 58 (81)
.+.-.|+-|+..+.+|.- +.||..| |..|..++... ...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 456699999998887631 2577666 99999998762 248999
Q ss_pred CCCCC
Q psy8828 59 CRATL 63 (81)
Q Consensus 59 C~~~~ 63 (81)
|.-.+
T Consensus 184 CGP~l 188 (772)
T 4g9i_A 184 CGPSY 188 (772)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 97765
No 147
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=73.44 E-value=3.7 Score=23.07 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+.|..|...+.......=|..||..|..+. ....|..|...+..
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccCC
Confidence 445555544443222223455677776543 23567777776643
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.31 E-value=1.7 Score=20.34 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=18.1
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.|..|.+.+...++..-+..||.+| +.|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSS
T ss_pred cCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCC
Confidence 4666666555433333344444444 235556555543
No 149
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=73.08 E-value=0.99 Score=25.93 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=27.4
Q ss_pred ccccccccCCCCCeecCCCCcccHHHHHHHHh----CCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFD----REQTCPLCRATL 63 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~----~~~~CP~C~~~~ 63 (81)
..|.+|.+.-.--.--.|...||..|+.+-+. ....||.|+..-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 46888886422100116778899999865433 346899997653
No 150
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=72.94 E-value=0.19 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=13.3
Q ss_pred CCCCcccHHHHHHHHh
Q psy8828 36 TCCHIFCESCVTKWFD 51 (81)
Q Consensus 36 ~C~h~fc~~Cl~~~~~ 51 (81)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999987744
No 151
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.84 E-value=3 Score=20.03 Aligned_cols=36 Identities=17% Similarity=0.450 Sum_probs=21.9
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
.|+.|.+.+.+..+..-+..||.+| ..|..|+..+.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 5777777666544444455555554 34777777764
No 152
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=71.67 E-value=0.37 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRAT 62 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~~ 62 (81)
.+..|.||.+. ..+++ .|...||..|+..-+. ....||.|...
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45689999874 22222 6788899999874333 33578888543
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.35 E-value=4.2 Score=18.96 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=20.0
Q ss_pred cccccccCCCC----CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 21 ~C~iC~~~~~~----p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
.|+.|.+.+.. .++..-+..||.+| ..|-.|+..+.
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 56677766653 33334455555555 34666666654
No 154
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.42 E-value=8 Score=18.98 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=21.1
Q ss_pred CccccccccCCCC-CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKT-PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~-p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
...|+.|...+.. ..+..-+..||..| +.|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCC
Confidence 4467777776654 23334455555555 335566555543
No 155
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.39 E-value=3.7 Score=19.41 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=20.5
Q ss_pred CCCccccccccCCCCCe-ec----CCCCcccHHHHH
Q psy8828 17 GVGCICPICHDEFKTPV-QL----TCCHIFCESCVT 47 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~-~l----~C~h~fc~~Cl~ 47 (81)
+....|++|...+.+.. .+ .|..-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34568999999875432 22 577789999983
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.28 E-value=2.7 Score=20.23 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=24.8
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.|+.|...+...++..-+..||..| +.|-.|+.++..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCS
T ss_pred cCccccCEeccceEEECCceeCccC--------CccccCCCCCCC
Confidence 7888888777544445556666655 457888777754
No 157
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.63 E-value=4.7 Score=19.22 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=21.8
Q ss_pred ccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
..|+.|.+.+....+..-+..|+..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 35777777665544444555555555 34677776664
No 158
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.52 E-value=0.46 Score=22.10 Aligned_cols=42 Identities=19% Similarity=0.614 Sum_probs=24.4
Q ss_pred CCccccccccCCCCCeec--CCCCcccHHHHHHHHh----CCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL--TCCHIFCESCVTKWFD----REQTCPLCRA 61 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l--~C~h~fc~~Cl~~~~~----~~~~CP~C~~ 61 (81)
.+..|.+|.+. ..++. .|...|+..|+.+-+. ....||.|..
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 34568888764 22222 6777888888764332 2345776643
No 159
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.51 E-value=2.8 Score=19.87 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=25.1
Q ss_pred ccccccccCCC-CCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFK-TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~-~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
..|+.|.+.+. ...+..-+..||..| ..|..|+.++..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCC
Confidence 47888888876 344444556666655 458888877764
No 160
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.08 E-value=2.3 Score=19.91 Aligned_cols=46 Identities=24% Similarity=0.654 Sum_probs=29.6
Q ss_pred CCCccccccccCCC---CCeec--CCCCcccHHHHHHHH-------hCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFK---TPVQL--TCCHIFCESCVTKWF-------DREQTCPLCRAT 62 (81)
Q Consensus 17 ~~~~~C~iC~~~~~---~p~~l--~C~h~fc~~Cl~~~~-------~~~~~CP~C~~~ 62 (81)
.+...|.+|..... +.+++ .|...||..|+..-+ .....|+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34568999997642 23333 788899999986422 234678887543
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.58 E-value=7.5 Score=18.72 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=26.5
Q ss_pred CCccccccccCCCC-CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT-PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 18 ~~~~C~iC~~~~~~-p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
....|+.|.+.+.. ..+..-+..||.+| +.|..|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcCC
Confidence 45589999998763 33334455666665 458888887753
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.91 E-value=3.5 Score=19.55 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=22.8
Q ss_pred ccccccccCCCC----CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 20 ~~C~iC~~~~~~----p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
..|+.|...+.. .++..-+..||.+| ..|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 367778777764 34444555666666 34777766664
No 163
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=67.55 E-value=0.087 Score=27.39 Aligned_cols=42 Identities=26% Similarity=0.571 Sum_probs=26.4
Q ss_pred CccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
+..||+|...+.. .=++.+|..|-.. +.....||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCccee----cCCEEECccccch-hhccccCcchhhHHHH
Confidence 3789999987653 1233347766543 2234579999888743
No 164
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.50 E-value=2.8 Score=20.15 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=21.8
Q ss_pred ccccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
..|+.|...+.+.++..-+..|+..| ..|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CccccCCCeecceeEEECCccccHHh--------cCcccCCCccCC
Confidence 46777777666543334455555544 347777766653
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.33 E-value=3.9 Score=19.02 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=19.1
Q ss_pred cccccccCCCC--CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKT--PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~--p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.|+.|.+.+.. .++..-+..||..| ..|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCC
Confidence 56666666553 23333444555444 346666665543
No 166
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.14 E-value=2.4 Score=19.69 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=29.0
Q ss_pred CCCccccccccCCCC-Ceec---CCCCcccHHHHHHHHh-----CCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKT-PVQL---TCCHIFCESCVTKWFD-----REQTCPLCRA 61 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~-p~~l---~C~h~fc~~Cl~~~~~-----~~~~CP~C~~ 61 (81)
.+...|++|...+.+ ...+ .|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 355689999988743 2233 6777889888842111 3467888854
No 167
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=66.07 E-value=2.3 Score=21.37 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=31.5
Q ss_pred CccccccccCCCCCe-ecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPV-QLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~-~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
-+.|..|...+.... ...=|..||..|..+. ....|..|.+++..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCcccc
Confidence 478888888876532 3345678898887432 34689999888863
No 168
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.61 E-value=1.3 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=0.0
Q ss_pred CccccccccCCCCCe----ecCCCCcccHHHHHHH
Q psy8828 19 GCICPICHDEFKTPV----QLTCCHIFCESCVTKW 49 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~----~l~C~h~fc~~Cl~~~ 49 (81)
...|.+|...|.--. -..||+.||..|-...
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 457999998775321 1279999999998654
No 169
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.40 E-value=1.9 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCccccccccCCC---CCe--ecCCCCcccHHHHH
Q psy8828 18 VGCICPICHDEFK---TPV--QLTCCHIFCESCVT 47 (81)
Q Consensus 18 ~~~~C~iC~~~~~---~p~--~l~C~h~fc~~Cl~ 47 (81)
....|.+|...+. +.- -..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999873 121 23788988888864
No 170
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.84 E-value=9.3 Score=17.67 Aligned_cols=31 Identities=16% Similarity=0.553 Sum_probs=13.3
Q ss_pred ccccccccCCCCC-eecCCCCcccHHHHHHHH
Q psy8828 20 CICPICHDEFKTP-VQLTCCHIFCESCVTKWF 50 (81)
Q Consensus 20 ~~C~iC~~~~~~p-~~l~C~h~fc~~Cl~~~~ 50 (81)
+.|..|...+... ....=+..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 4445555444322 122334455555554443
No 171
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.38 E-value=0.98 Score=26.91 Aligned_cols=41 Identities=29% Similarity=0.604 Sum_probs=23.4
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----C-CCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----R-EQTCPLCRA 61 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~-~~~CP~C~~ 61 (81)
.|.+|...-.....+ .|...||..|+.+-+. . ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577777642222223 7888999999975443 2 457888854
No 172
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.30 E-value=12 Score=18.81 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=20.0
Q ss_pred CccccccccCCCC--CeecCCCCcccHH
Q psy8828 19 GCICPICHDEFKT--PVQLTCCHIFCES 44 (81)
Q Consensus 19 ~~~C~iC~~~~~~--p~~l~C~h~fc~~ 44 (81)
...|..|...+.- +..-.||..||..
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred CccchhhCCeecccCCeEcCCCCEeccc
Confidence 4689999986443 6777899999964
No 173
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.26 E-value=11 Score=18.42 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=18.1
Q ss_pred CccccccccCCC-CCeecCCCCcccH
Q psy8828 19 GCICPICHDEFK-TPVQLTCCHIFCE 43 (81)
Q Consensus 19 ~~~C~iC~~~~~-~p~~l~C~h~fc~ 43 (81)
...|..|...+. .+..-.||..||.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred CCcChhhCCcccccCeecCCCCEech
Confidence 458999988543 2455579999996
No 174
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=64.05 E-value=6.4 Score=20.80 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=27.9
Q ss_pred CccccccccCCCCCe-ecCCCCcccHHHHHHHHhCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTPV-QLTCCHIFCESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~-~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
...|+.|...+.... +..-+..||..| +.|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 358999999887763 445666777766 45888988875
No 175
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.84 E-value=3.7 Score=19.58 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=21.3
Q ss_pred cccccccCCCCCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
.|+.|...+....+..-+..|+..| ..|..|+.++..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCC
Confidence 5777777666544334444555444 347777776654
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.18 E-value=7.9 Score=18.48 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=24.2
Q ss_pred ccccccccCCC--CCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~--~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
..|+.|...+. ..++..-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 36888888777 333334466666655 457788777754
No 177
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.89 E-value=12 Score=17.75 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=19.6
Q ss_pred CCccccccccCCCC-CeecCCCCcccHH
Q psy8828 18 VGCICPICHDEFKT-PVQLTCCHIFCES 44 (81)
Q Consensus 18 ~~~~C~iC~~~~~~-p~~l~C~h~fc~~ 44 (81)
....|..|...+.- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 34689999986443 4555899999963
No 178
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.60 E-value=3.8 Score=19.42 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCccccccccCCCCC-eecCCCCcccH-HHHHHHHhCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTP-VQLTCCHIFCE-SCVTKWFDREQTCPLCRAT 62 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p-~~l~C~h~fc~-~Cl~~~~~~~~~CP~C~~~ 62 (81)
+-+.|..|...+... ....=+..||. .|..+. ....|..|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 347888888877653 33345677888 587654 34567777544
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.03 E-value=1.1 Score=17.85 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q psy8828 55 TCPLCRATLV 64 (81)
Q Consensus 55 ~CP~C~~~~~ 64 (81)
.||+|+..++
T Consensus 5 ~CpvCk~q~P 14 (28)
T 2jvx_A 5 CCPKCQYQAP 14 (28)
T ss_dssp ECTTSSCEES
T ss_pred cCccccccCc
Confidence 3555554443
No 180
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.39 E-value=5.3 Score=19.05 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCCCccccccccCCCCC-eec---CCCCcccHHHHHHHH----hCCCCCCCCCC
Q psy8828 16 LGVGCICPICHDEFKTP-VQL---TCCHIFCESCVTKWF----DREQTCPLCRA 61 (81)
Q Consensus 16 ~~~~~~C~iC~~~~~~p-~~l---~C~h~fc~~Cl~~~~----~~~~~CP~C~~ 61 (81)
..+...| +|.....+. ..+ .|..-||..|+.--. .....||.|+.
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3455678 798876443 233 577778888874221 12357777754
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.36 E-value=6.3 Score=18.58 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=25.3
Q ss_pred ccccccccCCCC-----CeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 20 CICPICHDEFKT-----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 20 ~~C~iC~~~~~~-----p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
..|+.|...+.. .++..-+..||..| +.|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCC
Confidence 468888888774 33334556666665 458888887754
No 182
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=57.83 E-value=8.9 Score=26.80 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=34.2
Q ss_pred CCCccccccccCCCCCee----------cCCCCcc--------------------cHHHHHHHHhC--------CCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQ----------LTCCHIF--------------------CESCVTKWFDR--------EQTCPL 58 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~----------l~C~h~f--------------------c~~Cl~~~~~~--------~~~CP~ 58 (81)
.+.-.|+-|+..+.+|.- +.||..| |..|..++... ...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 455689999998887631 3577555 99999998652 247999
Q ss_pred CCCCC
Q psy8828 59 CRATL 63 (81)
Q Consensus 59 C~~~~ 63 (81)
|.-.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 97665
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=57.57 E-value=5.3 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.668 Sum_probs=20.9
Q ss_pred CCccccccccCCC---CCe--ecCCCCcccHHHH
Q psy8828 18 VGCICPICHDEFK---TPV--QLTCCHIFCESCV 46 (81)
Q Consensus 18 ~~~~C~iC~~~~~---~p~--~l~C~h~fc~~Cl 46 (81)
..-.|.+|...|. +.. -..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3568999999753 222 2279999999886
No 184
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.69 E-value=12 Score=19.17 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCccccccccCCCC---CeecCCCCcccHHHHHHHHhCC
Q psy8828 18 VGCICPICHDEFKT---PVQLTCCHIFCESCVTKWFDRE 53 (81)
Q Consensus 18 ~~~~C~iC~~~~~~---p~~l~C~h~fc~~Cl~~~~~~~ 53 (81)
+-+.|..|...+.+ .....=|..||..|..+.+...
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 34788899888864 3333456789999988776644
No 185
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.92 E-value=7.2 Score=18.71 Aligned_cols=31 Identities=19% Similarity=0.512 Sum_probs=22.0
Q ss_pred CccccccccCCCCCeecCC-CCcccHHHHHHHH
Q psy8828 19 GCICPICHDEFKTPVQLTC-CHIFCESCVTKWF 50 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C-~h~fc~~Cl~~~~ 50 (81)
.--|-||.+.-. -.-+.| +-.||..|..+.-
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 346899998722 123478 6799999998764
No 186
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.23 E-value=16 Score=17.23 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCccccc--cccCCCCCeecC-CCCcccHHHHHHHHhCCCCCC
Q psy8828 18 VGCICPI--CHDEFKTPVQLT-CCHIFCESCVTKWFDREQTCP 57 (81)
Q Consensus 18 ~~~~C~i--C~~~~~~p~~l~-C~h~fc~~Cl~~~~~~~~~CP 57 (81)
....|.. |...-..|+.-. |+..||.+ -.+...-.|+
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~---HR~~e~H~C~ 50 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK---HRHPLDHDCS 50 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH---HHSTTSSCCC
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc---cCCccCCcCC
Confidence 3457888 887644465555 99999963 2223344565
No 187
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=53.89 E-value=0.62 Score=23.30 Aligned_cols=28 Identities=29% Similarity=0.835 Sum_probs=19.1
Q ss_pred ccccccCCC-----CCeecC-CCCcccHHHHHHH
Q psy8828 22 CPICHDEFK-----TPVQLT-CCHIFCESCVTKW 49 (81)
Q Consensus 22 C~iC~~~~~-----~p~~l~-C~h~fc~~Cl~~~ 49 (81)
||-|...+. ..+.-+ |++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 886666432 123444 9999999998777
No 188
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=52.97 E-value=9.2 Score=19.98 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=22.9
Q ss_pred CCccccccccCCCC--CeecCCCCcccHHHHHHHHh
Q psy8828 18 VGCICPICHDEFKT--PVQLTCCHIFCESCVTKWFD 51 (81)
Q Consensus 18 ~~~~C~iC~~~~~~--p~~l~C~h~fc~~Cl~~~~~ 51 (81)
+-+.|..|...+.. .....=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 34788888888742 23445577888888877654
No 189
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.99 E-value=17 Score=16.59 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=4.5
Q ss_pred cccccccCCC
Q psy8828 21 ICPICHDEFK 30 (81)
Q Consensus 21 ~C~iC~~~~~ 30 (81)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 3444444443
No 190
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=51.61 E-value=14 Score=16.33 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=23.0
Q ss_pred cccccccCCCCC-eec----CCCCcccHHHHH----HHHhCCCCCCCCC
Q psy8828 21 ICPICHDEFKTP-VQL----TCCHIFCESCVT----KWFDREQTCPLCR 60 (81)
Q Consensus 21 ~C~iC~~~~~~p-~~l----~C~h~fc~~Cl~----~~~~~~~~CP~C~ 60 (81)
.|.+|...+.+. ..+ .|..-||..|+. ........||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 466787776432 122 366678888874 1112557788774
No 191
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.51 E-value=21 Score=17.47 Aligned_cols=28 Identities=18% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCCccccccccCCCC-CeecCCCCcccHH
Q psy8828 17 GVGCICPICHDEFKT-PVQLTCCHIFCES 44 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~-p~~l~C~h~fc~~ 44 (81)
.....|..|...+.- +..-.|+.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 345689999876443 4555899999963
No 192
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=51.39 E-value=5.9 Score=18.16 Aligned_cols=36 Identities=19% Similarity=0.525 Sum_probs=19.7
Q ss_pred cccccccCCC--CCeecCCCCccc--HHHHHHHHhCCCCCCCCCCCCC
Q psy8828 21 ICPICHDEFK--TPVQLTCCHIFC--ESCVTKWFDREQTCPLCRATLV 64 (81)
Q Consensus 21 ~C~iC~~~~~--~p~~l~C~h~fc--~~Cl~~~~~~~~~CP~C~~~~~ 64 (81)
.|+.|...+. +..+..-+..|| .+| ..|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCC
Confidence 4666666655 233334455555 555 34666666664
No 193
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.13 E-value=13 Score=17.33 Aligned_cols=39 Identities=18% Similarity=0.543 Sum_probs=23.8
Q ss_pred CccccccccCCC--CCeecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFK--TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~--~p~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
...|+.|.+.+. +.+...-+..||..| ..|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCC
Confidence 347888888775 333334455566555 457777777654
No 194
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=50.03 E-value=6.5 Score=15.52 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=13.3
Q ss_pred cccccccCCCCCeec-CCCCcccHHH
Q psy8828 21 ICPICHDEFKTPVQL-TCCHIFCESC 45 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l-~C~h~fc~~C 45 (81)
.|+.|.......-.+ .-|..|+..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 577777765433222 3455565555
No 195
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=49.88 E-value=16 Score=17.71 Aligned_cols=31 Identities=19% Similarity=0.696 Sum_probs=22.6
Q ss_pred CCccccccccCC-CCC--eecCCCCcccHHHHHH
Q psy8828 18 VGCICPICHDEF-KTP--VQLTCCHIFCESCVTK 48 (81)
Q Consensus 18 ~~~~C~iC~~~~-~~p--~~l~C~h~fc~~Cl~~ 48 (81)
....|.+|.+.. ..+ .-+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 357899998653 222 2458999999999986
No 196
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=49.47 E-value=24 Score=19.81 Aligned_cols=34 Identities=21% Similarity=0.623 Sum_probs=24.6
Q ss_pred CCccccccccCCCCCe-ecCCCCcccHHHHHHHHh
Q psy8828 18 VGCICPICHDEFKTPV-QLTCCHIFCESCVTKWFD 51 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~-~l~C~h~fc~~Cl~~~~~ 51 (81)
+-+.|..|...+.... ...=+..||..|..+...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 4478888988877642 334567899999987764
No 197
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.35 E-value=22 Score=17.13 Aligned_cols=44 Identities=23% Similarity=0.485 Sum_probs=27.9
Q ss_pred CCccccccccCCCCCeec-----CCCCcccHHHHHHHHh---------CCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKTPVQL-----TCCHIFCESCVTKWFD---------REQTCPLCRAT 62 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l-----~C~h~fc~~Cl~~~~~---------~~~~CP~C~~~ 62 (81)
+...| ||.........+ .|..-||..|+.--.. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45678 899874444333 4777899999842111 24678888553
No 198
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=48.07 E-value=22 Score=17.22 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=28.5
Q ss_pred cCCCCccccccccCCCCCeec----------------CCCCcccH-HHHHHHHh-----CCCCCCCCCCCCCC
Q psy8828 15 LLGVGCICPICHDEFKTPVQL----------------TCCHIFCE-SCVTKWFD-----REQTCPLCRATLVD 65 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l----------------~C~h~fc~-~Cl~~~~~-----~~~~CP~C~~~~~~ 65 (81)
.....+.|.+|...|.....+ .|+-.|-. .-+...+. ....|+.|...+..
T Consensus 13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 344568999999888652111 35555532 23333333 12578888776654
No 199
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=47.40 E-value=15 Score=25.58 Aligned_cols=32 Identities=25% Similarity=0.877 Sum_probs=23.5
Q ss_pred ccccccccCCCCC----------eecCCCCcccHHHHHHHHh
Q psy8828 20 CICPICHDEFKTP----------VQLTCCHIFCESCVTKWFD 51 (81)
Q Consensus 20 ~~C~iC~~~~~~p----------~~l~C~h~fc~~Cl~~~~~ 51 (81)
..||+|.-...+. ..++|+-.||..|.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~ 55 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYR 55 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhc
Confidence 4678887765542 2468999999999986654
No 200
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.68 E-value=5.3 Score=20.59 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q psy8828 53 EQTCPLCRATLVD 65 (81)
Q Consensus 53 ~~~CP~C~~~~~~ 65 (81)
...||+|+.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999887753
No 201
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=43.10 E-value=11 Score=19.01 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=26.0
Q ss_pred CCCccccccccCCCCCeec--CCC---CcccHHHHHHHH--hCCCCCCC-CCC
Q psy8828 17 GVGCICPICHDEFKTPVQL--TCC---HIFCESCVTKWF--DREQTCPL-CRA 61 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l--~C~---h~fc~~Cl~~~~--~~~~~CP~-C~~ 61 (81)
.+..-| ||.......++. .|. ..||..|+.--. .....||. |..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 445677 899865444332 433 578999985110 13468888 754
No 202
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.81 E-value=20 Score=17.48 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHh-----CCCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-----REQTCPLCRATLVDD 66 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~-----~~~~CP~C~~~~~~~ 66 (81)
.....|++|...|..... |.+.+. +...|+.|.+.+...
T Consensus 26 ~~~h~C~~Cgk~F~~~~~-----------L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGA-----------QERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp CTTEECTTSCCEESSHHH-----------HHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCEECCCCCCCcCcHHH-----------HhhhhhhccCCCccCCCCCCCEeCCH
Confidence 345678888777665322 222222 235799998877543
No 203
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.28 E-value=26 Score=17.49 Aligned_cols=27 Identities=26% Similarity=0.488 Sum_probs=19.7
Q ss_pred CCccccc--cccCCCCCeecC-CCCcccHH
Q psy8828 18 VGCICPI--CHDEFKTPVQLT-CCHIFCES 44 (81)
Q Consensus 18 ~~~~C~i--C~~~~~~p~~l~-C~h~fc~~ 44 (81)
....|.. |...-..|..-. |+..||.+
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 4468988 887755666665 99999963
No 204
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.17 E-value=10 Score=14.59 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q psy8828 55 TCPLCRATLVD 65 (81)
Q Consensus 55 ~CP~C~~~~~~ 65 (81)
.||+|++..+.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 58888765543
No 205
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=39.86 E-value=16 Score=16.65 Aligned_cols=39 Identities=18% Similarity=0.552 Sum_probs=24.8
Q ss_pred CccccccccCCCCC--eecCCCCcccHHHHHHHHhCCCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTP--VQLTCCHIFCESCVTKWFDREQTCPLCRATLVD 65 (81)
Q Consensus 19 ~~~C~iC~~~~~~p--~~l~C~h~fc~~Cl~~~~~~~~~CP~C~~~~~~ 65 (81)
...|+.|...+... +...-+..|+..| ..|-.|..++..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C--------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT--------SSCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC--------CcccCCCCCCCC
Confidence 34788888887743 3334555666655 357788777654
No 206
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=39.73 E-value=18 Score=18.89 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=19.0
Q ss_pred CccccccccCCCCCeecCCCCcccHH
Q psy8828 19 GCICPICHDEFKTPVQLTCCHIFCES 44 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l~C~h~fc~~ 44 (81)
...|..|...-..-+-|.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45699998765444567999999843
No 207
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.15 E-value=15 Score=16.14 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=9.0
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 34556688888753
No 208
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.76 E-value=4.5 Score=19.40 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=5.5
Q ss_pred cccccccCCC
Q psy8828 21 ICPICHDEFK 30 (81)
Q Consensus 21 ~C~iC~~~~~ 30 (81)
.|+.|.+.+.
T Consensus 9 ~C~~C~~~I~ 18 (81)
T 1a7i_A 9 KCGACGRTVY 18 (81)
T ss_dssp BCSSSCCBCS
T ss_pred cCcCcCcccc
Confidence 4555655553
No 209
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.71 E-value=7.1 Score=17.49 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=12.3
Q ss_pred CCccccccccCCCCCeec
Q psy8828 18 VGCICPICHDEFKTPVQL 35 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l 35 (81)
..+.|.+|...|.....+
T Consensus 17 ~~~~C~~C~k~f~~~~~l 34 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTL 34 (73)
T ss_dssp SEEECSSSCCEEECCCCC
T ss_pred CCeeCCcccchhCCHHHh
Confidence 347899998877655433
No 210
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.98 E-value=16 Score=18.85 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=29.0
Q ss_pred CccccccccCCCCC-eec----CCCCcccHHHHHH----H--H----hCCCCCCCCCCCC
Q psy8828 19 GCICPICHDEFKTP-VQL----TCCHIFCESCVTK----W--F----DREQTCPLCRATL 63 (81)
Q Consensus 19 ~~~C~iC~~~~~~p-~~l----~C~h~fc~~Cl~~----~--~----~~~~~CP~C~~~~ 63 (81)
...|++|...+.+. ..+ .|..-||..|+.- . + .....||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999986432 222 5777899999841 1 1 0346899996654
No 211
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=35.71 E-value=38 Score=15.89 Aligned_cols=37 Identities=16% Similarity=0.515 Sum_probs=25.9
Q ss_pred cCCCCccccccccCCCCCeec----CCCCccc-HHHHHHHHh
Q psy8828 15 LLGVGCICPICHDEFKTPVQL----TCCHIFC-ESCVTKWFD 51 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~~p~~l----~C~h~fc-~~Cl~~~~~ 51 (81)
.......|.-|...+...... ..-|.|| ..||..+..
T Consensus 16 ~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~ 57 (62)
T 2das_A 16 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSS 57 (62)
T ss_dssp SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCC
T ss_pred CCccccChhhccchhhcCceeeeecCchhheechHHHcccCC
Confidence 334577999999998875332 4668887 678877643
No 212
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=35.52 E-value=49 Score=17.17 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCccccCCCCccccccccCCCCCeec--CCC----CcccHHHHHHHHhCCCCCCCCCCCCCCC
Q psy8828 10 PTKETLLGVGCICPICHDEFKTPVQL--TCC----HIFCESCVTKWFDREQTCPLCRATLVDD 66 (81)
Q Consensus 10 ~~~~~~~~~~~~C~iC~~~~~~p~~l--~C~----h~fc~~Cl~~~~~~~~~CP~C~~~~~~~ 66 (81)
+..-.-.++.+.|||-++..++.+.+ +=+ ..|-..-+.+....+..=|+-|.++...
T Consensus 18 ~~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~s 80 (102)
T 2kkx_A 18 PERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITAS 80 (102)
T ss_dssp TTTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTT
T ss_pred hhhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHh
Confidence 33344456778999999999988766 222 2466778888877776668888887654
No 213
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.85 E-value=18 Score=16.25 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=9.7
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 34566789998764
No 214
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.10 E-value=20 Score=16.32 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=9.9
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.+...||+|...
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 45667788888764
No 215
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.37 E-value=21 Score=16.04 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=9.8
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.+...||+|...
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 45667789988763
No 216
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=32.36 E-value=30 Score=13.86 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=13.1
Q ss_pred CCccccccccCCCCCeecCCCCccc
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFC 42 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc 42 (81)
...+|++|...-.....-.|-..||
T Consensus 8 pfhecalcysitdpgerqrcidmyc 32 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQRCIDMYC 32 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTCGGGTTT
T ss_pred ccchheeEEeecCcchhhhhhhhee
Confidence 3457888877544433334444443
No 217
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=32.11 E-value=12 Score=18.02 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q psy8828 54 QTCPLCRATLV 64 (81)
Q Consensus 54 ~~CP~C~~~~~ 64 (81)
..||+|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999998874
No 218
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=31.96 E-value=5.9 Score=16.35 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.2
Q ss_pred cCCCCcccHHHHHHH
Q psy8828 35 LTCCHIFCESCVTKW 49 (81)
Q Consensus 35 l~C~h~fc~~Cl~~~ 49 (81)
.+|.|+.|..|.-+.
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 379999998876554
No 219
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=15 Score=18.08 Aligned_cols=30 Identities=20% Similarity=0.588 Sum_probs=19.5
Q ss_pred CCCccccccccCCCC----C-eecCCCCcccHHHH
Q psy8828 17 GVGCICPICHDEFKT----P-VQLTCCHIFCESCV 46 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~----p-~~l~C~h~fc~~Cl 46 (81)
.....|+.|.+.|-- . +--.|.|..|.+|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 345689999987542 1 12268888877774
No 220
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=31.14 E-value=12 Score=19.59 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=25.3
Q ss_pred ccCCCCccccccccCCCCCeec-----CCCCcccHHHHHHHHh----CCCCCCCCC
Q psy8828 14 TLLGVGCICPICHDEFKTPVQL-----TCCHIFCESCVTKWFD----REQTCPLCR 60 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~~p~~l-----~C~h~fc~~Cl~~~~~----~~~~CP~C~ 60 (81)
.....+..|.+|.+. ..++ .|-..||..|+. +. ....||.|.
T Consensus 10 ~~~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 334456679999853 2233 366788888886 33 224566554
No 221
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=30.89 E-value=30 Score=16.20 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=9.9
Q ss_pred CCCCccccccccC
Q psy8828 16 LGVGCICPICHDE 28 (81)
Q Consensus 16 ~~~~~~C~iC~~~ 28 (81)
..+...|.||...
T Consensus 6 ~~d~~~C~iC~KT 18 (62)
T 2a20_A 6 KGDAPTCGICHKT 18 (62)
T ss_dssp SSCCCCCSSSSCS
T ss_pred cCCcchhhhhccc
Confidence 3456689999986
No 222
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.72 E-value=32 Score=15.43 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHh-----CCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-----REQTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~-----~~~~CP~C~~~~~~ 65 (81)
+..+.|.+|...|.....+ ..... ....|+.|.+.+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~l-----------~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNL-----------ASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHH-----------HHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHHH-----------HHHHHHcCCCCCEECCCCCchhCC
Confidence 4567899988877754322 11111 23578999877654
No 223
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=30.58 E-value=55 Score=16.20 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=21.5
Q ss_pred CccccccccCCCCCeec------CCCCcccHHHHHHH
Q psy8828 19 GCICPICHDEFKTPVQL------TCCHIFCESCVTKW 49 (81)
Q Consensus 19 ~~~C~iC~~~~~~p~~l------~C~h~fc~~Cl~~~ 49 (81)
...|.+|.+.......+ =|+-+++.+|+...
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 35899998875542222 38888999998754
No 224
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.45 E-value=22 Score=16.14 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=9.5
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 34566788888763
No 225
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.09 E-value=13 Score=17.81 Aligned_cols=12 Identities=33% Similarity=0.980 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCC
Q psy8828 53 EQTCPLCRATLV 64 (81)
Q Consensus 53 ~~~CP~C~~~~~ 64 (81)
--.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 346777766654
No 226
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.81 E-value=25 Score=16.85 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=9.9
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 45567789888764
No 227
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=28.75 E-value=1.9 Score=16.27 Aligned_cols=10 Identities=50% Similarity=1.657 Sum_probs=5.3
Q ss_pred ccHHHHHHHH
Q psy8828 41 FCESCVTKWF 50 (81)
Q Consensus 41 fc~~Cl~~~~ 50 (81)
||..|-.+|+
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 5555555554
No 228
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.53 E-value=26 Score=11.86 Aligned_cols=10 Identities=30% Similarity=1.155 Sum_probs=4.6
Q ss_pred cccccccCCC
Q psy8828 21 ICPICHDEFK 30 (81)
Q Consensus 21 ~C~iC~~~~~ 30 (81)
.|.+|...|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 4555544443
No 229
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.32 E-value=25 Score=18.32 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=14.0
Q ss_pred CCCCcccHHHHHHHHhCCC-CCCCCCCCC
Q psy8828 36 TCCHIFCESCVTKWFDREQ-TCPLCRATL 63 (81)
Q Consensus 36 ~C~h~fc~~Cl~~~~~~~~-~CP~C~~~~ 63 (81)
.||+.|=. ..... .||.|..+.
T Consensus 78 ~CG~~~e~------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKP------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECS------CCSTTCCCSSSSSCC
T ss_pred CCCCEEeC------CCCCCCcCccccCCC
Confidence 56776543 12346 899998774
No 230
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.30 E-value=10 Score=20.92 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q psy8828 54 QTCPLCRATL 63 (81)
Q Consensus 54 ~~CP~C~~~~ 63 (81)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799998775
No 231
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=27.57 E-value=63 Score=15.95 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCccccccccCC-CCCeec---CCCCcccHHHHHHH
Q psy8828 17 GVGCICPICHDEF-KTPVQL---TCCHIFCESCVTKW 49 (81)
Q Consensus 17 ~~~~~C~iC~~~~-~~p~~l---~C~h~fc~~Cl~~~ 49 (81)
+..+.|.||.+.- -..+.- .|...|+-.|..+.
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 4567999997642 222222 58889999998754
No 232
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.34 E-value=23 Score=16.89 Aligned_cols=11 Identities=55% Similarity=1.322 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q psy8828 54 QTCPLCRATLV 64 (81)
Q Consensus 54 ~~CP~C~~~~~ 64 (81)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 46999988764
No 233
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.33 E-value=30 Score=16.43 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=12.7
Q ss_pred cccCCCCccccccccCCC
Q psy8828 13 ETLLGVGCICPICHDEFK 30 (81)
Q Consensus 13 ~~~~~~~~~C~iC~~~~~ 30 (81)
...+-+.+.||+|...+.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 344566789999988654
No 234
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.24 E-value=26 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=9.3
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 34556788888763
No 235
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=27.09 E-value=55 Score=15.23 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCC
Q psy8828 53 EQTCPLCRATLVDD 66 (81)
Q Consensus 53 ~~~CP~C~~~~~~~ 66 (81)
...||.|..++...
T Consensus 18 k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 18 KEICPKCGEKTVIP 31 (60)
T ss_dssp SSBCSSSCSBCBCC
T ss_pred cccCcCCCCcCCCC
Confidence 35688888876544
No 236
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.98 E-value=17 Score=18.91 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=21.2
Q ss_pred cccccccCCCCCeec---CCCCcccHHHHHHHHh----CCCCCCCCC
Q psy8828 21 ICPICHDEFKTPVQL---TCCHIFCESCVTKWFD----REQTCPLCR 60 (81)
Q Consensus 21 ~C~iC~~~~~~p~~l---~C~h~fc~~Cl~~~~~----~~~~CP~C~ 60 (81)
.|.+|...-....++ .|...||..|+.+-+. ....||.|.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 455666543333233 6777788888764322 123566553
No 237
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=26.46 E-value=46 Score=16.78 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred CccccccccCCCC-CeecC--CCCcccHH
Q psy8828 19 GCICPICHDEFKT-PVQLT--CCHIFCES 44 (81)
Q Consensus 19 ~~~C~iC~~~~~~-p~~l~--C~h~fc~~ 44 (81)
...|..|...-.+ -+-|. |||.+|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999854333 34567 99999954
No 238
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.83 E-value=30 Score=11.59 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCC
Q psy8828 54 QTCPLCRATLVDD 66 (81)
Q Consensus 54 ~~CP~C~~~~~~~ 66 (81)
..|+.|.+.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 4577887766543
No 239
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.22 E-value=36 Score=16.18 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=11.3
Q ss_pred cCCCCccccccccCCC
Q psy8828 15 LLGVGCICPICHDEFK 30 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~ 30 (81)
.+-+.+.||+|...+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 3456778999987654
No 240
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.15 E-value=35 Score=18.81 Aligned_cols=44 Identities=25% Similarity=0.519 Sum_probs=28.7
Q ss_pred CCccccccccCCCC-Ceec---CCCCcccHHHHHH--HH---hCCCCCCCCCCC
Q psy8828 18 VGCICPICHDEFKT-PVQL---TCCHIFCESCVTK--WF---DREQTCPLCRAT 62 (81)
Q Consensus 18 ~~~~C~iC~~~~~~-p~~l---~C~h~fc~~Cl~~--~~---~~~~~CP~C~~~ 62 (81)
+...| +|.....+ ...+ .|...||..|+.- .. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 99887542 2223 6888999999941 11 235789999653
No 241
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.81 E-value=22 Score=17.86 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q psy8828 54 QTCPLCRATLV 64 (81)
Q Consensus 54 ~~CP~C~~~~~ 64 (81)
..||+|.+++.
T Consensus 9 ~~~PlCG~~L~ 19 (95)
T 2k5c_A 9 AKCPICGSPLK 19 (95)
T ss_dssp EECSSSCCEEC
T ss_pred ccCCcCCCccC
Confidence 46999988764
No 242
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.79 E-value=35 Score=15.49 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=11.6
Q ss_pred ccCCCCccccccccCCC
Q psy8828 14 TLLGVGCICPICHDEFK 30 (81)
Q Consensus 14 ~~~~~~~~C~iC~~~~~ 30 (81)
..+-+-+.||+|...+.
T Consensus 5 ~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 5 AGLLEILACPACHAPLE 21 (56)
T ss_dssp CSCTTSCCCSSSCSCEE
T ss_pred HHHHhheeCCCCCCcce
Confidence 34556778998888643
No 243
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.48 E-value=59 Score=14.58 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCCccccccccCCCCCeecCCCCcccHHHHHHHHh-----CCCCCCCCCCCCCC
Q psy8828 17 GVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFD-----REQTCPLCRATLVD 65 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~~~~~-----~~~~CP~C~~~~~~ 65 (81)
+..+.|.+|...|.....| ...+. ....|+.|.+.+..
T Consensus 16 ~~~~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDL-----------SKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHH-----------HHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHHHH-----------HHHHHHcCCCcCeeCCCCCCccCC
Confidence 4568899998877654222 22222 22468888777654
No 244
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.10 E-value=16 Score=12.31 Aligned_cols=6 Identities=33% Similarity=1.065 Sum_probs=2.3
Q ss_pred cccccc
Q psy8828 22 CPICHD 27 (81)
Q Consensus 22 C~iC~~ 27 (81)
|.+|..
T Consensus 5 C~~C~k 10 (26)
T 2lvu_A 5 CERCGK 10 (26)
Confidence 333333
No 245
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.05 E-value=16 Score=12.66 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=2.9
Q ss_pred CCCCCCC
Q psy8828 56 CPLCRAT 62 (81)
Q Consensus 56 CP~C~~~ 62 (81)
|+.|.+.
T Consensus 6 C~~C~k~ 12 (30)
T 2lvr_A 6 CIHCQRQ 12 (30)
Confidence 4444333
No 246
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.12 E-value=39 Score=12.42 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=7.6
Q ss_pred CccccccccCCCC
Q psy8828 19 GCICPICHDEFKT 31 (81)
Q Consensus 19 ~~~C~iC~~~~~~ 31 (81)
.+.|.+|...|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4567666665543
No 247
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.11 E-value=26 Score=11.86 Aligned_cols=6 Identities=33% Similarity=1.320 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy8828 56 CPLCRA 61 (81)
Q Consensus 56 CP~C~~ 61 (81)
|+.|.+
T Consensus 6 C~~C~k 11 (28)
T 2kvf_A 6 CSVCGK 11 (28)
T ss_dssp CSSSCC
T ss_pred CCCCCc
Confidence 333433
No 248
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.95 E-value=25 Score=11.85 Aligned_cols=7 Identities=43% Similarity=1.241 Sum_probs=2.9
Q ss_pred CCCCCCC
Q psy8828 56 CPLCRAT 62 (81)
Q Consensus 56 CP~C~~~ 62 (81)
|+.|.+.
T Consensus 6 C~~C~k~ 12 (27)
T 2kvh_A 6 CSLCPQR 12 (27)
T ss_dssp CSSSSCE
T ss_pred CCCcChh
Confidence 4444333
No 249
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=39 Score=12.28 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=7.9
Q ss_pred CccccccccCCCC
Q psy8828 19 GCICPICHDEFKT 31 (81)
Q Consensus 19 ~~~C~iC~~~~~~ 31 (81)
.+.|.+|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4567777666554
No 250
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.50 E-value=65 Score=15.59 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q psy8828 52 REQTCPLCRAT 62 (81)
Q Consensus 52 ~~~~CP~C~~~ 62 (81)
....||.|.+.
T Consensus 25 ~ky~C~fCgk~ 35 (72)
T 3jyw_9 25 ARYDCSFCGKK 35 (72)
T ss_dssp SCBCCSSCCSS
T ss_pred cCccCCCCCCc
Confidence 45678888665
No 251
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.39 E-value=33 Score=11.34 Aligned_cols=7 Identities=43% Similarity=1.269 Sum_probs=2.7
Q ss_pred CCCCCCC
Q psy8828 56 CPLCRAT 62 (81)
Q Consensus 56 CP~C~~~ 62 (81)
|+.|.+.
T Consensus 4 C~~C~k~ 10 (27)
T 1znf_A 4 CGLCERS 10 (27)
T ss_dssp CSSSCCB
T ss_pred CCCCCCc
Confidence 3344333
No 252
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.31 E-value=31 Score=13.73 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=10.6
Q ss_pred CCccccccccCCCCC
Q psy8828 18 VGCICPICHDEFKTP 32 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p 32 (81)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 11 KPYECDVCRKAFSHH 25 (46)
T ss_dssp SSCBCTTTCCBCSSS
T ss_pred CCcCCCCcCchhCCH
Confidence 357888888777654
No 253
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.13 E-value=47 Score=12.63 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=8.7
Q ss_pred CccccccccCCCC
Q psy8828 19 GCICPICHDEFKT 31 (81)
Q Consensus 19 ~~~C~iC~~~~~~ 31 (81)
.+.|.+|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4677777776654
No 254
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.06 E-value=71 Score=15.90 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q psy8828 52 REQTCPLCRAT 62 (81)
Q Consensus 52 ~~~~CP~C~~~ 62 (81)
....||.|.+.
T Consensus 34 ~ky~CpfCGk~ 44 (83)
T 3j21_i 34 QKHTCPVCGRK 44 (83)
T ss_dssp SCBCCSSSCSS
T ss_pred cccCCCCCCCc
Confidence 45689999765
No 255
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.84 E-value=38 Score=17.02 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.5
Q ss_pred cCCCCccccccccC
Q psy8828 15 LLGVGCICPICHDE 28 (81)
Q Consensus 15 ~~~~~~~C~iC~~~ 28 (81)
.+.++..||+|...
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 44566788888753
No 256
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.68 E-value=31 Score=19.88 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy8828 54 QTCPLCRAT 62 (81)
Q Consensus 54 ~~CP~C~~~ 62 (81)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999765
No 257
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=74 Score=14.66 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=19.5
Q ss_pred ccccccccCCCCCeec---CCC-CcccHHHHHH
Q psy8828 20 CICPICHDEFKTPVQL---TCC-HIFCESCVTK 48 (81)
Q Consensus 20 ~~C~iC~~~~~~p~~l---~C~-h~fc~~Cl~~ 48 (81)
..|..|........+. .|. ..+|..|...
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 7899999764434443 453 4689999864
No 258
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.15 E-value=20 Score=12.40 Aligned_cols=9 Identities=33% Similarity=1.032 Sum_probs=3.8
Q ss_pred cccccccCC
Q psy8828 21 ICPICHDEF 29 (81)
Q Consensus 21 ~C~iC~~~~ 29 (81)
.|.+|...|
T Consensus 4 ~C~~C~k~f 12 (29)
T 2lvt_A 4 QCVMCGKAF 12 (29)
Confidence 344444433
No 259
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.47 E-value=31 Score=11.68 Aligned_cols=7 Identities=29% Similarity=0.857 Sum_probs=2.7
Q ss_pred ccccccc
Q psy8828 21 ICPICHD 27 (81)
Q Consensus 21 ~C~iC~~ 27 (81)
.|.+|..
T Consensus 5 ~C~~C~~ 11 (30)
T 2m0d_A 5 QCDYCGR 11 (30)
T ss_dssp ECTTTCC
T ss_pred cCCCCCc
Confidence 3443333
No 260
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=21.37 E-value=21 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=19.5
Q ss_pred CCccccccccCCCCCeecCCCCcccHHHHH
Q psy8828 18 VGCICPICHDEFKTPVQLTCCHIFCESCVT 47 (81)
Q Consensus 18 ~~~~C~iC~~~~~~p~~l~C~h~fc~~Cl~ 47 (81)
....|++|.+.+-+. |-..|..|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 556899999987665 7788888863
No 261
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.10 E-value=40 Score=16.09 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=11.3
Q ss_pred cCCCCccccccccCCC
Q psy8828 15 LLGVGCICPICHDEFK 30 (81)
Q Consensus 15 ~~~~~~~C~iC~~~~~ 30 (81)
.+-+.+.||+|...+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3456778999988654
No 262
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.70 E-value=38 Score=11.39 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=6.9
Q ss_pred CCCCCCCCCCC
Q psy8828 55 TCPLCRATLVD 65 (81)
Q Consensus 55 ~CP~C~~~~~~ 65 (81)
.|+.|...+..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 1rik_A 4 ACPECPKRFMR 14 (29)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 47777666544
No 263
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=20.54 E-value=24 Score=17.23 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=0.0
Q ss_pred hCCCCCCCCCCCCC
Q psy8828 51 DREQTCPLCRATLV 64 (81)
Q Consensus 51 ~~~~~CP~C~~~~~ 64 (81)
.....||+|...+.
T Consensus 6 ~r~k~C~fc~~~~~ 19 (75)
T 3i1m_R 6 RRRKFCRFTAEGVQ 19 (75)
T ss_dssp --------------
T ss_pred CCCCCCCcccCCCC
Confidence 34567888876553
No 264
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.21 E-value=43 Score=16.69 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q psy8828 53 EQTCPLCRAT 62 (81)
Q Consensus 53 ~~~CP~C~~~ 62 (81)
.+.||+|...
T Consensus 23 ~F~CPfCnh~ 32 (85)
T 1wii_A 23 QFTCPFCNHE 32 (85)
T ss_dssp CCCCTTTCCS
T ss_pred eEcCCCCCCC
Confidence 3567777665
No 265
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.13 E-value=44 Score=13.43 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=10.6
Q ss_pred CCCccccccccCCCCC
Q psy8828 17 GVGCICPICHDEFKTP 32 (81)
Q Consensus 17 ~~~~~C~iC~~~~~~p 32 (81)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 10 RKQVACEICGKIFRDV 25 (48)
T ss_dssp CCSEEETTTTEEESSH
T ss_pred CcCeeCCCCCcccCCH
Confidence 3457888887766653
No 266
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.08 E-value=42 Score=11.24 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCC
Q psy8828 54 QTCPLCRATLVDD 66 (81)
Q Consensus 54 ~~CP~C~~~~~~~ 66 (81)
..|+.|...+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4577787766543
Done!