RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8828
(81 letters)
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 65.8 bits (160), Expect = 1e-15
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 67
C IC + F V L C H FC C+ +W R+ CP+CR +
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 61.8 bits (150), Expect = 7e-15
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
C IC PV L C H+FC CV + C LCR + +D
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 62.2 bits (151), Expect = 7e-15
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRA 61
C IC F+ PV C H FCESC + F C +C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQ 57
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 61.3 bits (149), Expect = 1e-14
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 4 GQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
G G S + L C IC D + L C H FC+ C+ KW DR + CP+CR +
Sbjct: 1 GSSGSSGRVKQL-TDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
Query: 64 VDD 66
Sbjct: 59 TGA 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 62.1 bits (150), Expect = 3e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATL 63
C IC + K C H+ C SC+T W + E Q CP CR +
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 57.1 bits (138), Expect = 1e-12
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
C IC + F + + C H +C C+ K+ + CP C T+
Sbjct: 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 56.1 bits (135), Expect = 3e-12
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 22 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQ-TCPLCRATL 63
C IC ++ + C + C SC+ +W ++ CP CRA L
Sbjct: 25 CFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 56.9 bits (137), Expect = 3e-12
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATLVDDPA 68
C C + PV C H C+ C+ + F + +CP CR L +
Sbjct: 81 CVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 128
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 54.8 bits (132), Expect = 4e-12
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
+C IC +T C H FC+SC+ + F CP C +
Sbjct: 17 LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 54.7 bits (132), Expect = 4e-12
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 22 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRA 61
CPIC ++ C H FC C+T+W + TCPLC+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 55.6 bits (134), Expect = 5e-12
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
+C +C F + C H FC++C+ ++ + + CP+C +
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 54.1 bits (130), Expect = 6e-12
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTP-------VQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + V C H+FC C+ TCP CR +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 54.0 bits (130), Expect = 9e-12
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 22 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQ--TCPLCRATLVDDPA 68
C IC D V + CC + +C+ C+ TCP C V A
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 55.0 bits (132), Expect = 1e-11
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFD-REQTCPLCRATLVDDPAWR 70
C C + P+ C H C+ C+ + F + +CP CR L A +
Sbjct: 55 CICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ 104
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 52.5 bits (126), Expect = 3e-11
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 51.7 bits (124), Expect = 6e-11
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 52.0 bits (125), Expect = 1e-10
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ---TCPLCRAT 62
CPIC + K PV C HIFC+ C+ K ++++ CPLC+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 52.1 bits (125), Expect = 1e-10
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDDPAWRD 71
CPIC + VQ C H FC++C+ K D CP+ L+++ + D
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 50.5 bits (121), Expect = 2e-10
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 13 ETLLGVGCICPICHDEFK---TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68
E +G G CP+C +++ + QL C H+F +SC+ W ++ +CP+CR +L
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 49.8 bits (119), Expect = 4e-10
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWF-DREQTCPLCRATLVDD 66
C CH +P Q C H FCESC+ C C+ ++V D
Sbjct: 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 50.1 bits (120), Expect = 4e-10
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 22 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDR--EQTCPLCRATLVDDP 67
C IC D V + CC + +C+ C+ E TCP C V
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 64
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 50.3 bits (120), Expect = 7e-10
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 22 CPICHDEFKTPVQLT-CCHIFCESCVTKWFDREQTCPLCRAT 62
C C + + PV L C HIFC +CV+ CP+C
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG--CPVCYTP 64
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 49.3 bits (118), Expect = 1e-09
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 22 CPICHDEFK---TPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC E+ +L C H F + CV+ W + TCP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 49.7 bits (118), Expect = 1e-09
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDP 67
+C C + + P Q C H +C C+ Q C C + +
Sbjct: 33 LCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 49.1 bits (117), Expect = 2e-09
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 20 CICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQ-TCPLCRATL 63
C C IC + PV L C H C+ C ++ CP CR +
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 48.8 bits (116), Expect = 3e-09
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATL 63
C IC PV+ +C H+FC C+ + CP CR
Sbjct: 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 47.4 bits (113), Expect = 4e-09
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT------CPLCRAT 62
CPIC + K PV C H FC +C+T ++ + CP+CR
Sbjct: 21 TCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 47.3 bits (113), Expect = 4e-09
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT-------CPLCRAT 62
CPIC + P+ L C H C +C+T T CP+C +
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 49.2 bits (117), Expect = 4e-09
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTK-WFDREQTCPLCRATLV 64
+CPIC D K + C H FC C+ + CP CR LV
Sbjct: 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 47.0 bits (112), Expect = 5e-09
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT---CPLCRAT 62
ICPIC D + PV + C H FC C+T+ + CPLC+ +
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 46.7 bits (111), Expect = 7e-09
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 22 CPICHDEFK---TPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 67
C +C ++FK C H F C+ KW + + CPLC ++
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 46.5 bits (111), Expect = 1e-08
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT------CPLCRAT 62
CPIC + P+ L C H FC++C+T + CP+CR +
Sbjct: 21 TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 48.6 bits (115), Expect = 1e-08
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCE-SCVTKWFDREQTCPLCRATLVDD 66
+ P+ + K PV L + + S + + T P R L +
Sbjct: 893 LDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 44.9 bits (107), Expect = 2e-08
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 22 CPICHDEFKTP----VQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC ++ T L C H+ +C + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 48.0 bits (113), Expect = 2e-08
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQT--CPL--CRATL 63
CPI ++ P+ C H+F + + T CP C +
Sbjct: 183 TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 44.7 bits (106), Expect = 2e-08
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 22 CPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRA 61
C C E K P L C H C C+ CP+C+A
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQA 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 46.2 bits (109), Expect = 5e-08
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDDPAWRD 71
CPIC + VQ C H FC++C+ K CP+ L+++ + D
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 44.3 bits (105), Expect = 9e-08
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
P+ PV+L I S + + T P R TL +
Sbjct: 31 RDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 43.2 bits (102), Expect = 2e-07
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 22 CPICHDEFK----TPVQLTCCHIFCESCVTKWFDREQ---TCPLCR 60
CPIC + F P L C H C C+ K CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 43.1 bits (102), Expect = 2e-07
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
P+ PV+L + S + + T P R L +
Sbjct: 16 RDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 42.7 bits (101), Expect = 2e-07
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 22 CPICHDEFKTPV---QLTCCHIFCESCVTKWFDREQTCPLCRATLVDDP 67
C IC + +L C H+F + CV +W + CP+CR +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 42.3 bits (100), Expect = 2e-07
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFD---REQTCPLC 59
C +C + K PV + C H FC++C+T+W++ R+ CP+C
Sbjct: 17 SCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 42.3 bits (100), Expect = 3e-07
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 22 CPICHDEFKTPV---QLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPA 68
C +C +F++ L C H F CV KW +TCP+CRA
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSSG 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 42.0 bits (99), Expect = 4e-07
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQT---CPLC 59
ICPIC D + PV + C H FC C+T+ + CPLC
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 41.6 bits (98), Expect = 6e-07
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
+C I + PV IF +S + ++ P+ L
Sbjct: 5 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 41.8 bits (98), Expect = 7e-07
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 22 CPICHDEFKT----PVQLTCCHIFCESCVTKWFDREQTCPLCRATLV 64
C C E K V C H F C++ W + CPLC+ V
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 41.5 bits (97), Expect = 9e-07
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 22 CPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQ--TCPLCRATLVDD 66
C ICH TC CV K+F CP C +
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 41.7 bits (97), Expect = 2e-06
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 22 CPICHDEFK-------TPVQLTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + V C H+FC C+ TCP CR +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 37.5 bits (86), Expect = 8e-05
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 20 CICPICHDEFKTPVQ-------LTCCHIFCESCVTKWFDREQTCPLCRATL 63
CPIC D + VQ C H+FC C+ TCP CR +
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme,
KIAA0126, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.2
Length = 98
Score = 40.1 bits (94), Expect = 3e-06
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 21 ICPICHDEFKTPVQL-TCCHIFCESCVTKWFDREQTCPLCRATLVDD 66
+ PI PV L + S + + +QT P R+ L D
Sbjct: 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 39.1 bits (92), Expect = 4e-06
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 22 CPICHDEFKTPVQL----TCCHIFCESCVTKWFDREQTCPLCRATLV 64
C +C E + + C H F CV W TCPLCR T+V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 39.2 bits (91), Expect = 1e-05
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 21 ICPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQ------TCP--------LCRATLVD 65
CPI +E K PV+ C H + E + + + Q CP + ++ L+
Sbjct: 9 TCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68
Query: 66 DPA 68
D A
Sbjct: 69 DEA 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 40.1 bits (93), Expect = 1e-05
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 20 CICPICHDEFKTPVQ-LTCCHIFCESCVTKWFDR--EQTCPLCRATLVDD 66
IC ICH TC CV K+F E CP C +
Sbjct: 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 36.8 bits (84), Expect = 1e-04
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 25 CHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
E T C H F C+++W Q CPL
Sbjct: 72 ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 35.7 bits (82), Expect = 1e-04
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 22 CPICHDEFKTPVQL-----TCCHIFCESCVTKWFDREQ-TCPLCRATL 63
CP C L C H CESCV F R CP C L
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 37.1 bits (85), Expect = 2e-04
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 19/61 (31%)
Query: 22 CPICHDEF--------KTPVQLTCCHIFCESCVTKWFDREQ-----------TCPLCRAT 62
C IC + C C+ +WF CP C+A
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370
Query: 63 L 63
L
Sbjct: 371 L 371
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 35.6 bits (81), Expect = 2e-04
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 25 CHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCR 60
E T C H F C+++W Q CPL
Sbjct: 61 ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 34.3 bits (78), Expect = 5e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 22 CPICHDEF----KTPVQLTCCHIFCESCVTKWFDREQT-CPLCRATLVDDPA 68
CP+C + TC + C C + E CP CR +DPA
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 34.1 bits (79), Expect = 5e-04
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDR-EQTCPLCRATLVDD 66
CPI + K PV ++ + S + KW D +TCP + TL+
Sbjct: 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 34.4 bits (78), Expect = 8e-04
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 23/64 (35%)
Query: 22 CPICHDEFKTP------------------VQLTCCHIFCESCVTKWFDREQ-----TCPL 58
C IC ++ C H F C+ + CP
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87
Query: 59 CRAT 62
C+
Sbjct: 88 CKTI 91
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 33.4 bits (76), Expect = 0.003
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATLVDD 66
I + + P + + + R P+ R+ L D
Sbjct: 108 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 31.7 bits (71), Expect = 0.006
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 21 ICPICHDEFKTPVQLT-CCHIFCESCVTKWFDR-EQTCPLCRATLVD 65
C C K ++ C H+FC C + ++ CP C +
Sbjct: 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 31.5 bits (70), Expect = 0.016
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 13 ETLLGVGCICPICHDEFKTPVQ-LTCCHIFC---ESCVTKWFDREQ-TCPLCRATL 63
T L V +CP+ P + +TC H+ C + + CP+C
Sbjct: 209 TTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 31.0 bits (70), Expect = 0.025
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDRE-QTCPLCRATL 63
I + + P + + + R P+ R+ L
Sbjct: 210 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 29.4 bits (66), Expect = 0.032
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 22 CPICHDEFKTP--VQLTCCHIF-CESCVTKWFDREQTCPLCRA 61
C +C + + H+ C C + +CP+C+
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKK 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 28.2 bits (63), Expect = 0.074
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 22 CPICHDEFKTPVQL--TCCHIF-CESCVTKWFDREQTCPLCRA 61
C IC K + H+ C +C K R + CP+CR
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQ 53
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.5 bits (65), Expect = 0.089
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 21 ICPICHDEFKTPVQ-LTCCHIFC---ESCVTKWFDREQ-TCPLCRATL 63
CPI + K P + + C H+ C + CP+C+ +
Sbjct: 251 QCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 28.2 bits (63), Expect = 0.12
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 21 ICPICHDEFKTPVQLTCCHIF-CESCVTKWFDREQTCPLCRAT 62
+C +C +E C H CESC + Q+CP+CR+
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCA----AQLQSCPVCRSR 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 27.8 bits (62), Expect = 0.13
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 21 ICPICHDEFKTPVQLTCCHIF-CESCVTKWFDREQTCPLCRAT 62
+C IC D V + C H+ C+ C + CP+C
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCA----EAVDKCPMCYTV 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 27.9 bits (62), Expect = 0.15
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 22 CPICHDEF---KTPVQLTCCHIFCESCVTKWF 50
C +C E+ + C IFC C+ ++
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 28.8 bits (62), Expect = 0.15
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 20 CICPICHDEFKTPVQLTCCH-IFCESCVTKWFDREQTCPLCRAT 62
C +C D+ + V + C H + C+ C + CP+CR
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVCQECA----PSLRKCPICRGI 335
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 27.1 bits (60), Expect = 0.21
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 9 SPTKETLLGVGCICPICHDEFKTPVQLTCCH-IFCESCVTKWFDREQTCPLCRA 61
S E C +C + V L C H C+ C Q CP+CR
Sbjct: 5 SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGC----VKYFQQCPMCRQ 54
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 26.7 bits (58), Expect = 0.50
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 22 CPICHDEFKTPVQLTCC-HIFCESCVTKWFDREQTCPLCRATL 63
C C E K V C H C +C+T CP+C+ L
Sbjct: 31 CKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPL 71
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 26.5 bits (58), Expect = 0.53
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQ 79
CP C + H C SC ++ + + CP C L A GA YF Q
Sbjct: 34 HCPQCQ----HVLDQDNGHARCRSC-GEFIEMKALCPDCHQPLQVLKAC--GAVDYFCQ 85
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target
13955A1BCT15P1, dioxygenase, PSI-2, protein structure
initiative; 1.50A {Salmonella enterica subsp} PDB:
3hnq_A
Length = 152
Score = 26.9 bits (59), Expect = 0.63
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 28 EFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQIF 81
E K C T D ++V+ P R GAT + I+
Sbjct: 76 EPKASRPTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIY 129
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 26.3 bits (57), Expect = 0.66
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 21 ICPICHDEFKTPVQLTCC----HIFCESCVTKWFDR-----EQTCPLCRATLVDD 66
C ICH+ + + C H FC C + E CP +
Sbjct: 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVG 71
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 25.7 bits (57), Expect = 1.8
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 52 REQTCPLCRATLVD-DPAW 69
R+ PL R TL D AW
Sbjct: 34 RDTPGPLHRVTLYDGRQAW 52
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein,
structural genomics, PSI-2, protein structure
initiative; NMR {Salmonella typhimurium LT2}
Length = 81
Score = 24.9 bits (54), Expect = 2.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 21 ICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYFVQ 79
CP+CH ++ CE+C K F + CP CR L A GA YF Q
Sbjct: 4 TCPVCH----HALERNGDTAHCETC-AKDFSLQALCPDCRQPLQVLKAC--GAVDYFCQ 55
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 25.4 bits (54), Expect = 2.6
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 18 VGCICPICHDEFKTPVQLTCCHIFCESCVTKWFDREQTC 56
G + +C DE + C + VT ++ C
Sbjct: 751 DGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKAC 789
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 25.1 bits (55), Expect = 2.7
Identities = 6/24 (25%), Positives = 7/24 (29%), Gaps = 6/24 (25%)
Query: 22 CPICHDEFKTPV------QLTCCH 39
C C E+ P Q C
Sbjct: 164 CEKCSREYHDPHDRRFHAQPVACF 187
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain;
oxidoreductase, allosteric regulation, substrate
specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB:
1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Length = 605
Score = 25.0 bits (54), Expect = 3.2
Identities = 6/49 (12%), Positives = 12/49 (24%)
Query: 29 FKTPVQLTCCHIFCESCVTKWFDREQTCPLCRATLVDDPAWRDGATSYF 77
F + + C + + C +C T +Y
Sbjct: 534 FGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYL 582
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR
{Achromobacter cycloclastes} SCOP: d.357.1.1 PDB:
2hq3_A
Length = 175
Score = 24.6 bits (53), Expect = 3.5
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 50 FDREQTCPLCRATLVDDPAWR 70
E C+ L++ P +
Sbjct: 15 MTPETLGHYCQMNLLEHPGPK 35
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 23.9 bits (52), Expect = 3.5
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 21 ICPICHDEFKTPVQLTC-----CHIFCESCVTKWFD--REQTCPLCRAT 62
+C IC++E C SC++ W R C +C
Sbjct: 8 VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday
junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4}
SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A
2qnf_A*
Length = 157
Score = 24.4 bits (52), Expect = 5.0
Identities = 13/48 (27%), Positives = 13/48 (27%), Gaps = 5/48 (10%)
Query: 19 GCICPICHDEFKTPVQLTC---CHIFCESCVTKWFDREQTCPLCRATL 63
C IC E VQ H K R C LC A
Sbjct: 20 NGKCLICQRELNPDVQANHLDHDHELNGPKAGK--VRGLLCNLCDAAE 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 23.3 bits (50), Expect = 7.0
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 21 ICPICHDEFKTPVQLTC-------CHIFCESCVTKWFD--REQTCPLCRAT 62
IC ICH E L H ++C+ +W + C LC+
Sbjct: 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 23.9 bits (51), Expect = 8.9
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 18/72 (25%)
Query: 4 GQLGVSPTKETLLGVGCICPICHDEFKTPVQLTCCH---IFCESCVTKWF-------DRE 53
++ P+ IC IC D + H CE C K F D
Sbjct: 122 LKVPAHPSGNMASFTKHICAICGDR------SSGKHYGVYSCEGC--KGFFKRTVRKDLT 173
Query: 54 QTCPLCRATLVD 65
TC + L+D
Sbjct: 174 YTCRDNKDCLID 185
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 23.7 bits (50), Expect = 9.1
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 19 GCICPICHDEFKTPVQLTCCHIFC 42
G C C + LT I C
Sbjct: 215 GWKCSKCDMRENLWLNLTDGSILC 238
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 23.5 bits (50), Expect = 9.3
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 51 DREQTCPLCR---ATLVDDPA 68
+ TCP C+ +V+ +
Sbjct: 19 NIVLTCPECKVYPPKIVERFS 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.143 0.517
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,254,675
Number of extensions: 57363
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 140
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.2 bits)